Psyllid ID: psy18191

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MNRVVQAKARLESFVENSSQRCIKINLPKASHSPSSRPDQNYLRVSGFADLTQPPARGGFYPKPICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTATDCSFK
Secondary Structure (PSIPRED)
ccccEEEcccccEEEEccccEEEEEccccccccccccccccEEEEccEEcccccccccccccccEEEEEEccEEcccccEEEEEEccccccccccEEEEEccccccccccEEccccccccccccccccccccEEEcccccEEEcccccEEEEEEEEcccccEEEEEEccEEEcccccccEEEcccccEEEEEEEccccccccEEEEEEEEEccccEEEEEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHcccccEEEEcccccccccccccccEEEEcccEEEccccccccccccccHHHHHHHHcccccccEEEEccccccccccccEEEEcccccccccccccccccccccccccccccccccEEEEccccEEEEcccEEEEEEEcccccccEEEEEEcccEEEccccccEEEEcccEEEEEEEEccccccccEEEEEEEEccccEEEEccEEEEEEccccccccEEEc
Coil and Loop (DISEMBL)
MNRVVQAKARLESFVENSSQRcikinlpkashspssrpdqnylrvsgfadltqpparggfypkpiclrfqdllpqskqglmylvgsqaspdypnrfslcnnktwqkglplkkyhppslplfpgvhgdgyrvpritehpasavvprhepttlnckadgypepriewykdgslvsaeigshrillpagSLFFLSLvhgkkdtdsgVYWCVARNelgfarsknatldvagkistatdcsfk
Flexible Loop (DISEMBL)
MNRVVQAKARLESFVENSSQRCIKinlpkashspssrpDQNYLRVSGFADLTQPPARGGFYPKPICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITehpasavvprhepttlnckadgypEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELgfarsknatldvagkistatdcsfk
Low Complexity Region (SEG)
MNRVVQAKARLESFVENSSQRCIKINLPKASHSPSSRPDQNYLRVSGFADLTQPPARGGFYPKPICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTATDCSFK
Disordered region (IsUnstruct)
******************************************LRVSGFADLTQPPARGGFYPKPICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG***********
Disordered Region (DISOPRED)
******AKARLESFVENSSQRCIKINL**************YLRVSGFADLTQPPARGGFYPKPICLRFQDLLPQSKQGLMYLV***********FSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG**RILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIS********
Disordered Region (DISEMBL)
MNRVVQAKARLESFVENSSQRCIKINLPK**********QNYLRVSGFADLTQPPARGGFYPKPICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTATDCSFK
Disordered Region (DISPRO)
*****QAKARLESFVENSSQRCIKINLPKA********DQNYLRVSGFADLTQPPARGGFYPKPICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTATDCSFK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNRVVQAKARLESFVENSSQRCIKINLPKASHSPSSRPDQNYLRVSGFADLTQPPARGGFYPKPICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTATDCSFK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	238	2.2.26 [Sep-21-2011]
Q9HCK4	1378	Roundabout homolog 2 OS=H	yes	N/A	0.432	0.074	0.557	5e-27
Q7TPD3	1470	Roundabout homolog 2 OS=M	yes	N/A	0.432	0.070	0.548	6e-27
O89026	1612	Roundabout homolog 1 OS=M	no	N/A	0.399	0.058	0.595	8e-26
O55005	1651	Roundabout homolog 1 OS=R	yes	N/A	0.399	0.057	0.595	8e-26
Q9Y6N7	1651	Roundabout homolog 1 OS=H	no	N/A	0.399	0.057	0.595	9e-26
Q9Z2I4	1366	Roundabout homolog 3 OS=M	no	N/A	0.403	0.070	0.54	6e-23
Q96MS0	1386	Roundabout homolog 3 OS=H	no	N/A	0.403	0.069	0.53	2e-22
G5EBF1	1273	Protein sax-3 OS=Caenorha	yes	N/A	0.399	0.074	0.465	5e-16
P97798	1493	Neogenin OS=Mus musculus	no	N/A	0.382	0.060	0.430	1e-11
Q92859	1461	Neogenin OS=Homo sapiens	no	N/A	0.382	0.062	0.430	7e-11

>sp|Q9HCK4|ROBO2_HUMAN Roundabout homolog 2 OS=Homo sapiens GN=ROBO2 PE=1 SV=2

 Score =  121 bits (303), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 77/113 (68%), Gaps = 10/113 (8%)

Query: 124 VHGDGYRV------PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG 177
           V  DG R+      PRI EHP+  +V + EPTTLNCKA+G P P IEWYKDG  V  +  
Sbjct: 17  VRVDGSRLRQEDFPPRIVEHPSDVIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKD 76

Query: 178 ---SHRILLPAGSLFFLSLVHGKKDT-DSGVYWCVARNELGFARSKNATLDVA 226
              SHR+LLP+GSLFFL +VHG++   D G Y CVARN LG A S+NA+L+VA
Sbjct: 77  DPRSHRMLLPSGSLFFLRIVHGRRSKPDEGSYVCVARNYLGEAVSRNASLEVA 129

Receptor for SLIT2, and probably SLIT1, which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development.
Homo sapiens (taxid: 9606)

>sp|Q7TPD3|ROBO2_MOUSE Roundabout homolog 2 OS=Mus musculus GN=Robo2 PE=2 SV=2

 Score =  121 bits (303), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 62/113 (54%), Positives = 77/113 (68%), Gaps = 10/113 (8%)

Query: 124 VHGDGYRV------PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG 177
           +  DG R+      PRI EHP+  +V + EPTTLNCKA+G P P IEWYKDG  V  +  
Sbjct: 17  IQIDGSRLRQEDFPPRIVEHPSDVIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKD 76

Query: 178 ---SHRILLPAGSLFFLSLVHGKKDT-DSGVYWCVARNELGFARSKNATLDVA 226
              SHR+LLP+GSLFFL +VHG++   D G Y CVARN LG A S+NA+L+VA
Sbjct: 77  DPRSHRMLLPSGSLFFLRIVHGRRSKPDEGSYVCVARNYLGEAVSRNASLEVA 129

Receptor for SLIT2, and probably SLIT1, which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development.

Mus musculus (taxid: 10090)

>sp|O89026|ROBO1_MOUSE Roundabout homolog 1 OS=Mus musculus GN=Robo1 PE=1 SV=1

 Score =  117 bits (292), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 59/99 (59%), Positives = 70/99 (70%), Gaps = 4/99 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---SHRILLPAGSL 188
           PRI EHP+  +V + EP TLNCKA+G P P IEWYK G  V  +     SHR+LLP+GSL
Sbjct: 29  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 88

Query: 189 FFLSLVHGKKDT-DSGVYWCVARNELGFARSKNATLDVA 226
           FFL +VHG+K   D GVY CVARN LG A S NA+L+VA
Sbjct: 89  FFLRIVHGRKSRPDEGVYICVARNYLGEAVSHNASLEVA 127

Receptor for SLIT1 and SLIT2 which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. In axon growth cones, the silencing of the attractive effect of NTN1 by SLIT2 may require the formation of a ROBO1-DCC complex (By similarity). May be required for lung development.

Mus musculus (taxid: 10090)

>sp|O55005|ROBO1_RAT Roundabout homolog 1 OS=Rattus norvegicus GN=Robo1 PE=1 SV=1

 Score =  117 bits (292), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 59/99 (59%), Positives = 70/99 (70%), Gaps = 4/99 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---SHRILLPAGSL 188
           PRI EHP+  +V + EP TLNCKA+G P P IEWYK G  V  +     SHR+LLP+GSL
Sbjct: 68  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 127

Query: 189 FFLSLVHGKKDT-DSGVYWCVARNELGFARSKNATLDVA 226
           FFL +VHG+K   D GVY CVARN LG A S NA+L+VA
Sbjct: 128 FFLRIVHGRKSRPDEGVYICVARNYLGEAVSHNASLEVA 166

Receptor for SLIT1 and SLIT2 which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. In axon growth cones, the silencing of the attractive effect of NTN1 by SLIT2 may require the formation of a ROBO1-DCC complex. May be required for lung development.

Rattus norvegicus (taxid: 10116)

>sp|Q9Y6N7|ROBO1_HUMAN Roundabout homolog 1 OS=Homo sapiens GN=ROBO1 PE=1 SV=1

 Score =  117 bits (292), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 59/99 (59%), Positives = 70/99 (70%), Gaps = 4/99 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---SHRILLPAGSL 188
           PRI EHP+  +V + EP TLNCKA+G P P IEWYK G  V  +     SHR+LLP+GSL
Sbjct: 68  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 127

Query: 189 FFLSLVHGKKDT-DSGVYWCVARNELGFARSKNATLDVA 226
           FFL +VHG+K   D GVY CVARN LG A S NA+L+VA
Sbjct: 128 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHNASLEVA 166

Receptor for SLIT1 and SLIT2 which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. In axon growth cones, the silencing of the attractive effect of NTN1 by SLIT2 may require the formation of a ROBO1-DCC complex. May be required for lung development.

Homo sapiens (taxid: 9606)

>sp|Q9Z2I4|ROBO3_MOUSE Roundabout homolog 3 OS=Mus musculus GN=Robo3 PE=1 SV=2

 Score =  107 bits (268), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 71/100 (71%), Gaps = 4/100 (4%)

Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA---EIGSHRILLPAGS 187
           +PRI E P   VV R EP TL C+A+G P P IEWYK+G+ V+    +  +HR+LLP+G+
Sbjct: 63  MPRIVEQPPDLVVSRGEPATLPCRAEGRPRPNIEWYKNGARVATAREDPRAHRLLLPSGA 122

Query: 188 LFFLSLVHGKKDT-DSGVYWCVARNELGFARSKNATLDVA 226
           LFF  +VHG++   D GVY CVARN LG A S+NA+L+VA
Sbjct: 123 LFFPRIVHGRRSRPDEGVYTCVARNYLGAAASRNASLEVA 162

Thought to be involved during neural development in axonal navigation at the ventral midline of the neural tube. In spinal chord development plays a role in guiding commissural axons probably by preventing premature sensitivity to Slit proteins thus inhibiting Slit signaling through ROBO1. Required for hindbrain axon midline crossing.

Mus musculus (taxid: 10090)

>sp|Q96MS0|ROBO3_HUMAN Roundabout homolog 3 OS=Homo sapiens GN=ROBO3 PE=1 SV=2

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/100 (53%), Positives = 71/100 (71%), Gaps = 4/100 (4%)

Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA---EIGSHRILLPAGS 187
           +PRI E P   +V R EP TL C+A+G P P IEWYK+G+ V+    +  +HR+LLP+G+
Sbjct: 63  MPRIVEQPPDLLVSRGEPATLPCRAEGRPRPNIEWYKNGARVATVREDPRAHRLLLPSGA 122

Query: 188 LFFLSLVHGKKDT-DSGVYWCVARNELGFARSKNATLDVA 226
           LFF  +VHG++   D GVY CVARN LG A S+NA+L+VA
Sbjct: 123 LFFPRIVHGRRARPDEGVYTCVARNYLGAAASRNASLEVA 162

Thought to be involved during neural development in axonal navigation at the ventral midline of the neural tube. In spinal chord development plays a role in guiding commissural axons probably by preventing premature sensitivity to Slit proteins thus inhibiting Slit signaling through ROBO1 (By similarity). Required for hindbrain axon midline crossing.

Homo sapiens (taxid: 9606)

>sp|G5EBF1|SAX3_CAEEL Protein sax-3 OS=Caenorhabditis elegans GN=sax-3 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 58/101 (57%), Gaps = 6/101 (5%)

Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLV---SAEIGSHRILLPAGS 187
            P I EHP   VV R  P TLNC A      +I WYKDG  V     ++ SHRI+L  GS
Sbjct: 30  APVIIEHPIDVVVSRGSPATLNCGAKP-STAKITWYKDGQPVITNKEQVNSHRIVLDTGS 88

Query: 188 LFFLSLVHGK--KDTDSGVYWCVARNELGFARSKNATLDVA 226
           LF L +  GK  KD+D+G Y+CVA NE G  +S   +L +A
Sbjct: 89  LFLLKVNSGKNGKDSDAGAYYCVASNEHGEVKSNEGSLKLA 129

Required to confine migrating sex myoblasts to the ventral muscle quadrants during their migration through the body and for multiple aspects of sensory, motor, and interneuron axon guidance.

Caenorhabditis elegans (taxid: 6239)

>sp|P97798|NEO1_MOUSE Neogenin OS=Mus musculus GN=Neo1 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 137 HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHG 196
            P   +  R     LNC A   P P IEW KDG+ ++ E    R LLP GSLF  ++VH 
Sbjct: 69  EPVDTLSVRGSSVILNCSAYSEPSPNIEWKKDGTFLNLESDDRRQLLPDGSLFISNVVHS 128

Query: 197 KKDT-DSGVYWCVAR-NELGFARSKNATLDVAG 227
           K +  D G Y CVA  + LG   S+ A L VAG
Sbjct: 129 KHNKPDEGFYQCVATVDNLGTIVSRTAKLTVAG 161

May be involved as a regulatory protein in the transition of undifferentiated proliferating cells to their differentiated state. May also function as a cell adhesion molecule in a broad spectrum of embryonic and adult tissues.

Mus musculus (taxid: 10090)

>sp|Q92859|NEO1_HUMAN Neogenin OS=Homo sapiens GN=NEO1 PE=1 SV=2

 Score = 67.8 bits (164), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 137 HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHG 196
            P   +  R     LNC A   P P+IEW KDG+ ++      R LLP GSLF  ++VH 
Sbjct: 58  EPVDTLSVRGSSVILNCSAYSEPSPKIEWKKDGTFLNLVSDDRRQLLPDGSLFISNVVHS 117

Query: 197 KKDT-DSGVYWCVARNE-LGFARSKNATLDVAG 227
           K +  D G Y CVA  E LG   S+ A L VAG
Sbjct: 118 KHNKPDEGYYQCVATVESLGTIISRTAKLIVAG 150

May be involved as a regulatory protein in the transition of undifferentiated proliferating cells to their differentiated state. May also function as a cell adhesion molecule in a broad spectrum of embryonic and adult tissues.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
157127854	1285	roundabout [Aedes aegypti] gi|108872774|	0.491	0.091	0.579	1e-34
345496933	1421	PREDICTED: roundabout homolog 2-like [Na	0.449	0.075	0.620	6e-33
242022885	120	roundabout 1, 2, 3, putative [Pediculus	0.415	0.825	0.656	9e-33
198475340	1442	GA18870 [Drosophila pseudoobscura pseudo	0.441	0.072	0.6	2e-32
312385539	199	hypothetical protein AND_00659 [Anophele	0.361	0.432	0.652	5e-32
194759230	1335	GF15179 [Drosophila ananassae] gi|190615	0.428	0.076	0.607	7e-32
195470471	1346	GE17528 [Drosophila yakuba] gi|194173631	0.428	0.075	0.598	8e-32
195159654	1346	GL15646 [Drosophila persimilis] gi|19411	0.428	0.075	0.607	8e-32
11907990	1342	roundabout 3 [Drosophila melanogaster]	0.428	0.076	0.598	9e-32
24580839	1342	robo3, isoform A [Drosophila melanogaste	0.428	0.076	0.598	9e-32

>gi|157127854|ref|XP_001661212.1| roundabout [Aedes aegypti] gi|108872774|gb|EAT36999.1| AAEL010961-PA [Aedes aegypti]

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/119 (57%), Positives = 86/119 (72%), Gaps = 2/119 (1%)

Query: 108 LPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK 167
           L L + + P+    P    D    P+ITEHP   +VPRH+PTTLNCKA+G P P I WYK
Sbjct: 5   LDLVRVNVPTTTRVPA--EDAMEYPKITEHPLDVIVPRHDPTTLNCKAEGIPAPTITWYK 62

Query: 168 DGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
           DG  + AE GSH+ILLPAG LFFL +VH ++++D+GVYWC ARNELG ARS+NATL V+
Sbjct: 63  DGEAIKAEQGSHKILLPAGGLFFLKVVHSRRESDAGVYWCEARNELGVARSRNATLQVS 121

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345496933|ref|XP_003427853.1| PREDICTED: roundabout homolog 2-like [Nasonia vitripennis]

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 81/108 (75%), Gaps = 1/108 (0%)

Query: 120 LFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLV-SAEIGS 178
           +F  V    YR PRITEHP+   V +HEP TLNCKA+G P+P IEWYKDG LV ++   S
Sbjct: 20  VFASVAKGQYRSPRITEHPSDITVAKHEPVTLNCKAEGKPKPEIEWYKDGELVQTSPSDS 79

Query: 179 HRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
           HR+LLP GSLFFL ++HGKK+ D GVYWCVA+N+ G A S+NATL VA
Sbjct: 80  HRVLLPTGSLFFLRVIHGKKEQDGGVYWCVAKNQAGSATSRNATLTVA 127

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022885|ref|XP_002431868.1| roundabout 1, 2, 3, putative [Pediculus humanus corporis] gi|212517202|gb|EEB19130.1| roundabout 1, 2, 3, putative [Pediculus humanus corporis]

 Score =  145 bits (367), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 76/99 (76%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
           R P ITEHP   +V ++EP TLNCKADG PEP IEWYKDG LV A+  SH++LLP G LF
Sbjct: 7   RPPNITEHPIDVLVAKNEPVTLNCKADGKPEPVIEWYKDGELVKADGKSHKVLLPTGQLF 66

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
           FL + HG+K+ D GVYWCVA+N  G ARS+NATL VAGK
Sbjct: 67  FLKVAHGRKEQDGGVYWCVAKNSAGIARSQNATLQVAGK 105

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198475340|ref|XP_001357022.2| GA18870 [Drosophila pseudoobscura pseudoobscura] gi|198138777|gb|EAL34088.2| GA18870 [Drosophila pseudoobscura pseudoobscura]

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/110 (60%), Positives = 78/110 (70%)

Query: 120 LFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSH 179
           L    H  G   PRI EHP    VPRHEP TLNCKA+G P P I+WYKDG  +    GSH
Sbjct: 11  LLKWTHAQGSHPPRIVEHPIDTTVPRHEPATLNCKAEGSPTPTIQWYKDGVPLKILPGSH 70

Query: 180 RILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKI 229
           RI LPAG LFFL +V+ +++TD+GVYWC A+NELG ARS+NATL VA K+
Sbjct: 71  RITLPAGGLFFLKVVNSRRETDAGVYWCEAKNELGVARSRNATLQVAEKL 120

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312385539|gb|EFR30014.1| hypothetical protein AND_00659 [Anopheles darlingi]

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 62/95 (65%), Positives = 75/95 (78%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P+I EHP   +VPRHEP TLNCKA+G P P I WYKDG  + AE GSH++LLPAG LFFL
Sbjct: 6   PKIMEHPLDVIVPRHEPATLNCKAEGIPTPTITWYKDGEPIKAEQGSHKMLLPAGGLFFL 65

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
            +VH ++++DSGVYWC A NELG ARS+NATL V+
Sbjct: 66  KVVHSRRESDSGVYWCEASNELGIARSRNATLQVS 100

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194759230|ref|XP_001961852.1| GF15179 [Drosophila ananassae] gi|190615549|gb|EDV31073.1| GF15179 [Drosophila ananassae]

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 76/107 (71%)

Query: 120 LFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSH 179
           L    H  G   PRI EHP    VPRHEP TLNCKA+G P P I+WYKDG  +    GSH
Sbjct: 11  LLKWTHAQGSHPPRIVEHPIDTTVPRHEPATLNCKAEGSPTPTIQWYKDGVPLKILPGSH 70

Query: 180 RILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
           RI LPAG LFFL +V+ +++TD+GVYWC A+NELG ARS+NATL VA
Sbjct: 71  RITLPAGGLFFLKVVNSRRETDAGVYWCEAKNELGVARSRNATLQVA 117

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195470471|ref|XP_002087530.1| GE17528 [Drosophila yakuba] gi|194173631|gb|EDW87242.1| GE17528 [Drosophila yakuba]

 Score =  142 bits (359), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 76/107 (71%)

Query: 120 LFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSH 179
           L    H  G   PRI EHP    VPRHEP TLNCKA+G P P I+WYKDG  +    GSH
Sbjct: 11  LLKWTHAQGSHPPRIVEHPIDTTVPRHEPATLNCKAEGSPTPTIQWYKDGVPLKILPGSH 70

Query: 180 RILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
           RI LPAG LFFL +V+ +++TD+G+YWC A+NELG ARS+NATL VA
Sbjct: 71  RITLPAGGLFFLKVVNSRRETDAGIYWCEAKNELGVARSRNATLQVA 117

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195159654|ref|XP_002020693.1| GL15646 [Drosophila persimilis] gi|194117643|gb|EDW39686.1| GL15646 [Drosophila persimilis]

 Score =  142 bits (359), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 76/107 (71%)

Query: 120 LFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSH 179
           L    H  G   PRI EHP    VPRHEP TLNCKA+G P P I+WYKDG  +    GSH
Sbjct: 11  LLKWTHAQGSHPPRIVEHPIDTTVPRHEPATLNCKAEGSPTPTIQWYKDGVPLKILPGSH 70

Query: 180 RILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
           RI LPAG LFFL +V+ +++TD+GVYWC A+NELG ARS+NATL VA
Sbjct: 71  RITLPAGGLFFLKVVNSRRETDAGVYWCEAKNELGVARSRNATLQVA 117

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|11907990|gb|AAG41426.1|AF312580_1 roundabout 3 [Drosophila melanogaster]

 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 76/107 (71%)

Query: 120 LFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSH 179
           L    H  G   PRI EHP    VPRHEP TLNCKA+G P P I+WYKDG  +    GSH
Sbjct: 11  LLKWTHAQGSHPPRIVEHPIDTTVPRHEPATLNCKAEGSPTPTIQWYKDGVPLKILPGSH 70

Query: 180 RILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
           RI LPAG LFFL +V+ +++TD+G+YWC A+NELG ARS+NATL VA
Sbjct: 71  RITLPAGGLFFLKVVNSRRETDAGIYWCEAKNELGVARSRNATLQVA 117

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24580839|ref|NP_608592.2| robo3, isoform A [Drosophila melanogaster] gi|442625170|ref|NP_001259866.1| robo3, isoform B [Drosophila melanogaster] gi|22945488|gb|AAF51387.2| robo3, isoform A [Drosophila melanogaster] gi|51092123|gb|AAT94475.1| LP22668p [Drosophila melanogaster] gi|440213124|gb|AGB92403.1| robo3, isoform B [Drosophila melanogaster]

 Score =  142 bits (359), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 76/107 (71%)

Query: 120 LFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSH 179
           L    H  G   PRI EHP    VPRHEP TLNCKA+G P P I+WYKDG  +    GSH
Sbjct: 11  LLKWTHAQGSHPPRIVEHPIDTTVPRHEPATLNCKAEGSPTPTIQWYKDGVPLKILPGSH 70

Query: 180 RILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
           RI LPAG LFFL +V+ +++TD+G+YWC A+NELG ARS+NATL VA
Sbjct: 71  RITLPAGGLFFLKVVNSRRETDAGIYWCEAKNELGVARSRNATLQVA 117

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
FB|FBgn0041097	1342	robo3 "robo3" [Drosophila mela	0.449	0.079	0.598	3.6e-31
FB|FBgn0002543	1463	lea "leak" [Drosophila melanog	0.399	0.064	0.557	1e-27
UNIPROTKB|F8WBR3	564	ROBO2 "Roundabout homolog 2" [	0.399	0.168	0.595	9.3e-26
ZFIN|ZDB-GENE-000209-4	1419	robo3 "roundabout homolog 3" [	0.445	0.074	0.543	2.8e-25
UNIPROTKB|F1NTM1	1359	ROBO2 "Uncharacterized protein	0.399	0.069	0.595	5.6e-25
UNIPROTKB|Q9HCK4	1378	ROBO2 "Roundabout homolog 2" [	0.399	0.068	0.595	5.7e-25
MGI|MGI:1890110	1470	Robo2 "roundabout homolog 2 (D	0.399	0.064	0.595	6.2e-25
FB|FBgn0005631	1429	robo "roundabout" [Drosophila	0.436	0.072	0.528	2e-24
ZFIN|ZDB-GENE-001019-1	1513	robo2 "roundabout homolog 2" [	0.399	0.062	0.575	2.2e-24
MGI|MGI:1274781	1612	Robo1 "roundabout homolog 1 (D	0.399	0.058	0.595	3.9e-24

FB|FBgn0041097 robo3 "robo3" [Drosophila melanogaster (taxid:7227)]

 Score = 356 (130.4 bits), Expect = 3.6e-31, P = 3.6e-31
 Identities = 64/107 (59%), Positives = 76/107 (71%)

Query:   120 LFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSH 179
             L    H  G   PRI EHP    VPRHEP TLNCKA+G P P I+WYKDG  +    GSH
Sbjct:    11 LLKWTHAQGSHPPRIVEHPIDTTVPRHEPATLNCKAEGSPTPTIQWYKDGVPLKILPGSH 70

Query:   180 RILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
             RI LPAG LFFL +V+ +++TD+G+YWC A+NELG ARS+NATL VA
Sbjct:    71 RITLPAGGLFFLKVVNSRRETDAGIYWCEAKNELGVARSRNATLQVA 117

GO:0007419 "ventral cord development" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP;TAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0008046 "axon guidance receptor activity" evidence=NAS

GO:0008038 "neuron recognition" evidence=IMP

GO:0048036 "central complex development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

FB|FBgn0002543 lea "leak" [Drosophila melanogaster (taxid:7227)]

 Score = 324 (119.1 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 53/95 (55%), Positives = 72/95 (75%)

Query:   132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
             PRI EHP    VP+++P T NC+A+G P P I+W+KDG  +  + GSHRI+LPAG LFFL
Sbjct:    91 PRIIEHPMDTTVPKNDPFTFNCQAEGNPTPTIQWFKDGRELKTDTGSHRIMLPAGGLFFL 150

Query:   192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
              ++H ++++D+G YWC A+NE G ARS+NATL VA
Sbjct:   151 KVIHSRRESDAGTYWCEAKNEFGVARSRNATLQVA 185

GO:0007411 "axon guidance" evidence=IGI;IMP;TAS

GO:0007419 "ventral cord development" evidence=IMP

GO:0008046 "axon guidance receptor activity" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:2000274 "regulation of epithelial cell migration, open tracheal system" evidence=IMP

GO:0004872 "receptor activity" evidence=TAS

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=TAS

GO:0001764 "neuron migration" evidence=IMP

GO:0007432 "salivary gland boundary specification" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0048036 "central complex development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0022409 "positive regulation of cell-cell adhesion" evidence=IMP

GO:0042685 "cardioblast cell fate specification" evidence=IMP

GO:0003151 "outflow tract morphogenesis" evidence=IGI

GO:0008039 "synaptic target recognition" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

UNIPROTKB|F8WBR3 ROBO2 "Roundabout homolog 2" [Homo sapiens (taxid:9606)]

 Score = 298 (110.0 bits), Expect = 9.3e-26, P = 9.3e-26
 Identities = 59/99 (59%), Positives = 72/99 (72%)

Query:   132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---SHRILLPAGSL 188
             PRI EHP+  +V + EPTTLNCKA+G P P IEWYKDG  V  +     SHR+LLP+GSL
Sbjct:    31 PRIVEHPSDVIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKDDPRSHRMLLPSGSL 90

Query:   189 FFLSLVHGKKDT-DSGVYWCVARNELGFARSKNATLDVA 226
             FFL +VHG++   D G Y CVARN LG A S+NA+L+VA
Sbjct:    91 FFLRIVHGRRSKPDEGSYVCVARNYLGEAVSRNASLEVA 129

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-000209-4 robo3 "roundabout homolog 3" [Danio rerio (taxid:7955)]

 Score = 301 (111.0 bits), Expect = 2.8e-25, P = 2.8e-25
 Identities = 62/114 (54%), Positives = 79/114 (69%)

Query:   121 FPGVHGDGYRV----PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEI 176
             F G++G   R+    PRI EHP+  +V + EP TLNCKA+G P P +EWYKDG  V  + 
Sbjct:    48 FTGLNGSRPRLEDAAPRIVEHPSDLIVSKGEPATLNCKAEGRPTPMVEWYKDGERVETDR 107

Query:   177 G---SHRILLPAGSLFFLSLVHGKKDT-DSGVYWCVARNELGFARSKNATLDVA 226
                 SHR+LLP+GSLFFL +VHG++   D GVY CVARN LG A S+NA+L+VA
Sbjct:   108 EDPRSHRMLLPSGSLFFLRIVHGRRSKPDEGVYVCVARNYLGEAVSRNASLEVA 161

GO:0005515 "protein binding" evidence=IPI

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0071679 "commissural neuron axon guidance" evidence=IMP

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0048675 "axon extension" evidence=IMP

GO:0048264 "determination of ventral identity" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0007411 "axon guidance" evidence=IGI;IMP

UNIPROTKB|F1NTM1 ROBO2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 298 (110.0 bits), Expect = 5.6e-25, P = 5.6e-25
 Identities = 59/99 (59%), Positives = 72/99 (72%)

Query:   132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---SHRILLPAGSL 188
             PRI EHP+  +V + EPTTLNCKA+G P P IEWYKDG  V  +     SHR+LLP+GSL
Sbjct:    11 PRIVEHPSDVIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKDDPRSHRMLLPSGSL 70

Query:   189 FFLSLVHGKKDT-DSGVYWCVARNELGFARSKNATLDVA 226
             FFL +VHG++   D G Y CVARN LG A S+NA+L+VA
Sbjct:    71 FFLRIVHGRRSKPDEGSYVCVARNYLGEAVSRNASLEVA 109

GO:0001656 "metanephros development" evidence=IEA

GO:0001657 "ureteric bud development" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0030673 "axolemma" evidence=IEA

GO:0032870 "cellular response to hormone stimulus" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0050772 "positive regulation of axonogenesis" evidence=IEA

GO:0050925 "negative regulation of negative chemotaxis" evidence=IEA

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEA

UNIPROTKB|Q9HCK4 ROBO2 "Roundabout homolog 2" [Homo sapiens (taxid:9606)]

 Score = 298 (110.0 bits), Expect = 5.7e-25, P = 5.7e-25
 Identities = 59/99 (59%), Positives = 72/99 (72%)

Query:   132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---SHRILLPAGSL 188
             PRI EHP+  +V + EPTTLNCKA+G P P IEWYKDG  V  +     SHR+LLP+GSL
Sbjct:    31 PRIVEHPSDVIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKDDPRSHRMLLPSGSL 90

Query:   189 FFLSLVHGKKDT-DSGVYWCVARNELGFARSKNATLDVA 226
             FFL +VHG++   D G Y CVARN LG A S+NA+L+VA
Sbjct:    91 FFLRIVHGRRSKPDEGSYVCVARNYLGEAVSRNASLEVA 129

GO:0016021 "integral to membrane" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0008046 "axon guidance receptor activity" evidence=ISS;NAS

GO:0007417 "central nervous system development" evidence=NAS

GO:0050772 "positive regulation of axonogenesis" evidence=IDA

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0007420 "brain development" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0001656 "metanephros development" evidence=ISS

GO:0007411 "axon guidance" evidence=ISS;TAS

GO:0030673 "axolemma" evidence=ISS

GO:0031290 "retinal ganglion cell axon guidance" evidence=ISS

GO:0016199 "axon midline choice point recognition" evidence=ISS

GO:0001657 "ureteric bud development" evidence=IMP

GO:0050925 "negative regulation of negative chemotaxis" evidence=IDA

GO:0021891 "olfactory bulb interneuron development" evidence=ISS

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEP

GO:0032870 "cellular response to hormone stimulus" evidence=IEP

GO:0051964 "negative regulation of synapse assembly" evidence=ISS

MGI|MGI:1890110 Robo2 "roundabout homolog 2 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 298 (110.0 bits), Expect = 6.2e-25, P = 6.2e-25
 Identities = 59/99 (59%), Positives = 72/99 (72%)

Query:   132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---SHRILLPAGSL 188
             PRI EHP+  +V + EPTTLNCKA+G P P IEWYKDG  V  +     SHR+LLP+GSL
Sbjct:    31 PRIVEHPSDVIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKDDPRSHRMLLPSGSL 90

Query:   189 FFLSLVHGKKDT-DSGVYWCVARNELGFARSKNATLDVA 226
             FFL +VHG++   D G Y CVARN LG A S+NA+L+VA
Sbjct:    91 FFLRIVHGRRSKPDEGSYVCVARNYLGEAVSRNASLEVA 129

GO:0001656 "metanephros development" evidence=IMP

GO:0001657 "ureteric bud development" evidence=ISO;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006935 "chemotaxis" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007411 "axon guidance" evidence=ISO;IMP

GO:0008046 "axon guidance receptor activity" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016199 "axon midline choice point recognition" evidence=IGI

GO:0021891 "olfactory bulb interneuron development" evidence=IMP

GO:0030154 "cell differentiation" evidence=IEA

GO:0030673 "axolemma" evidence=IDA

GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP

GO:0042802 "identical protein binding" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0050772 "positive regulation of axonogenesis" evidence=ISO

GO:0050925 "negative regulation of negative chemotaxis" evidence=ISO

FB|FBgn0005631 robo "roundabout" [Drosophila melanogaster (taxid:7227)]

 Score = 293 (108.2 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 56/106 (52%), Positives = 71/106 (66%)

Query:   122 PGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA-EIGSHR 180
             P V G  Y+ PRI EHP   VV ++EP TLNCK +G PEP IEW+KDG  VS  E  SHR
Sbjct:    81 PAVRGQ-YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHR 139

Query:   181 ILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
             +    G+LFF   + GKK+ D G YWCVA+N +G A S++A+L +A
Sbjct:   140 VQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA 185

GO:0007411 "axon guidance" evidence=IMP;TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0035385 "Roundabout signaling pathway" evidence=IGI

GO:0044295 "axonal growth cone" evidence=IDA

GO:0016199 "axon midline choice point recognition" evidence=IMP;TAS

GO:0031982 "vesicle" evidence=IDA

GO:2000274 "regulation of epithelial cell migration, open tracheal system" evidence=IMP

GO:0008038 "neuron recognition" evidence=IMP

GO:0070983 "dendrite guidance" evidence=IMP

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030424 "axon" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0048813 "dendrite morphogenesis" evidence=IMP;TAS

GO:0004872 "receptor activity" evidence=TAS

GO:0007427 "epithelial cell migration, open tracheal system" evidence=TAS

GO:0007432 "salivary gland boundary specification" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0022409 "positive regulation of cell-cell adhesion" evidence=IMP

GO:0071666 "Slit-Robo signaling complex" evidence=IDA

GO:0008201 "heparin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009649 "entrainment of circadian clock" evidence=IDA

GO:0003151 "outflow tract morphogenesis" evidence=IGI

GO:0001964 "startle response" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IGI

GO:0043234 "protein complex" evidence=IPI

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0046716 "muscle cell homeostasis" evidence=IGI

GO:0072499 "photoreceptor cell axon guidance" evidence=IMP

ZFIN|ZDB-GENE-001019-1 robo2 "roundabout homolog 2" [Danio rerio (taxid:7955)]

 Score = 293 (108.2 bits), Expect = 2.2e-24, P = 2.2e-24
 Identities = 57/99 (57%), Positives = 71/99 (71%)

Query:   132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---SHRILLPAGSL 188
             PRI EHP+  +V + EP TLNCKA+G P P +EWYKDG  V  +     SHR+LLP+GSL
Sbjct:    30 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTVEWYKDGERVETDKDDPRSHRMLLPSGSL 89

Query:   189 FFLSLVHGKKDT-DSGVYWCVARNELGFARSKNATLDVA 226
             FFL +VHG++   D G Y CVARN LG A S+NA+L+VA
Sbjct:    90 FFLRIVHGRRSKPDEGAYVCVARNYLGEAVSRNASLEVA 128

GO:0007411 "axon guidance" evidence=IMP

GO:0033564 "anterior/posterior axon guidance" evidence=IGI;IMP

GO:0031290 "retinal ganglion cell axon guidance" evidence=IGI;IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048843 "negative regulation of axon extension involved in axon guidance" evidence=IMP

GO:0016199 "axon midline choice point recognition" evidence=IGI

MGI|MGI:1274781 Robo1 "roundabout homolog 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 291 (107.5 bits), Expect = 3.9e-24, P = 3.9e-24
 Identities = 59/99 (59%), Positives = 70/99 (70%)

Query:   132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---SHRILLPAGSL 188
             PRI EHP+  +V + EP TLNCKA+G P P IEWYK G  V  +     SHR+LLP+GSL
Sbjct:    29 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 88

Query:   189 FFLSLVHGKKDT-DSGVYWCVARNELGFARSKNATLDVA 226
             FFL +VHG+K   D GVY CVARN LG A S NA+L+VA
Sbjct:    89 FFLRIVHGRKSRPDEGVYICVARNYLGEAVSHNASLEVA 127

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO

GO:0006935 "chemotaxis" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007411 "axon guidance" evidence=ISO;IGI;IMP

GO:0008046 "axon guidance receptor activity" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016199 "axon midline choice point recognition" evidence=IGI

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=ISO

GO:0021891 "olfactory bulb interneuron development" evidence=IGI

GO:0030154 "cell differentiation" evidence=IEA

GO:0030275 "LRR domain binding" evidence=ISO

GO:0030424 "axon" evidence=ISO

GO:0030673 "axolemma" evidence=IDA

GO:0033600 "negative regulation of mammary gland epithelial cell proliferation" evidence=ISO

GO:0035385 "Roundabout signaling pathway" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0048814 "regulation of dendrite morphogenesis" evidence=ISO

GO:0050772 "positive regulation of axonogenesis" evidence=ISO

GO:0050925 "negative regulation of negative chemotaxis" evidence=ISO

GO:0060763 "mammary duct terminal end bud growth" evidence=IMP

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7TPD3	ROBO2_MOUSE	No assigned EC number	0.5486	0.4327	0.0700	yes	N/A
Q9HCK4	ROBO2_HUMAN	No assigned EC number	0.5575	0.4327	0.0747	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	238
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	2e-40
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	1e-15
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	3e-14
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	7e-13
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	4e-11
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	5e-11
cd00096	74	cd00096, Ig, Immunoglobulin domain	6e-11
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-10
smart00409	85	smart00409, IG, Immunoglobulin	1e-10
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	2e-09
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	4e-08
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	7e-08
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	1e-07
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	1e-07
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	3e-07
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	5e-07
cd05874	77	cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like	7e-07
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	7e-07
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	8e-07
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	8e-07
cd05850	94	cd05850, Ig1_Contactin-2, First Ig domain of conta	1e-06
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	1e-06
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	2e-06
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	4e-06
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	5e-06
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	7e-06
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	8e-06
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	9e-06
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	1e-05
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	1e-05
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	1e-05
cd05759	82	cd05759, Ig2_KIRREL3-like, Second immunoglobulin (	4e-05
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	6e-05
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	1e-04
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	2e-04
pfam00047	62	pfam00047, ig, Immunoglobulin domain	2e-04
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	3e-04
cd05868	76	cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-lik	4e-04
cd05749	81	cd05749, Ig2_Tyro3_like, Second immunoglobulin (Ig	4e-04
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	6e-04
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	0.002
cd05863	67	cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-l	0.003
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	0.003
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	0.003

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score =  133 bits (337), Expect = 2e-40
 Identities = 54/99 (54%), Positives = 71/99 (71%), Gaps = 4/99 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEI---GSHRILLPAGSL 188
           PRI EHP+  +V + +P TLNCKA+G P P I+W K+G  +  +     SHRI+LP+GSL
Sbjct: 2   PRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSL 61

Query: 189 FFLSLVHGKK-DTDSGVYWCVARNELGFARSKNATLDVA 226
           FFL +VHG+K  +D GVY CVA N LG A S+NA+L+VA
Sbjct: 62  FFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEVA 100

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 69.8 bits (171), Expect = 1e-15
 Identities = 41/95 (43%), Positives = 51/95 (53%), Gaps = 2/95 (2%)

Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLS 192
                P+  V  R  P  LNC A+G P P+IEW KDG L++      R  LP GSL   S
Sbjct: 1   WFLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITS 60

Query: 193 LVHGKKD-TDSGVYWCVARNE-LGFARSKNATLDV 225
           +VH K +  D G Y CVA+N+ LG   S+ A L V
Sbjct: 61  VVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV 95

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 65.7 bits (161), Expect = 3e-14
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 8/96 (8%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAG--SLF 189
           P+ T+ P    V   E     C   G P+P + W+KDG  +       ++    G  +L 
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLR-SSDRFKVTYEGGTYTLT 59

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             ++   + D D G Y CVA N  G     +A L V
Sbjct: 60  ISNV---QPD-DEGKYTCVATNSAG-EAEASAELTV 90

Length = 90

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 61.3 bits (149), Expect = 7e-13
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 7/68 (10%)

Query: 147 EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYW 206
           +  TL C A+G P P I W KDG      +      + +GS   L++     + DSG+Y 
Sbjct: 3   QSVTLTCPAEGNPVPNITWLKDGK----PLPESNRFVASGS--TLTIKSVSLE-DSGLYT 55

Query: 207 CVARNELG 214
           CVA N  G
Sbjct: 56  CVAENSAG 63

Length = 63

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 57.1 bits (138), Expect = 4e-11
 Identities = 35/94 (37%), Positives = 40/94 (42%), Gaps = 15/94 (15%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P +T  P+  VV   E  TL C A G P P   WYKDG  +S           + + FF 
Sbjct: 2   PVLT--PSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLS----------SSQNGFFT 49

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             V      DSG Y CVA N  G   S   TL V
Sbjct: 50  PNVS---AEDSGTYTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 57.0 bits (138), Expect = 5e-11
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 136 EHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLV 194
             P+   V   E   L C    G+PEP + W KDG  +         ++  G+L    L+
Sbjct: 1   VEPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPL-NLDNERVRIVDDGNL----LI 55

Query: 195 HGKKDTDSGVYWCVARNELGFARSKNATLDV 225
              + +D G Y CVA N +G   S  A L V
Sbjct: 56  AEARKSDEGTYKCVATNMVGERESAAARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 56.3 bits (135), Expect = 6e-11
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 150 TLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSL-VHGKKDTDSGVYWCV 208
           TL C A G P P I W K+G  + + + +        S    +L +      DSG Y CV
Sbjct: 2   TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCV 61

Query: 209 ARNELGFARSK 219
           A N  G   + 
Sbjct: 62  ASNSAGTVSAS 72

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 56.0 bits (135), Expect = 1e-10
 Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGK 197
           P S  V   E  TL+C+A G P P + WYK G  + AE G   +   +GS   L++ +  
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSV-SRSGSTSTLTISNVT 59

Query: 198 KDTDSGVYWCVARNELGFARSKNATLDV 225
            + DSG Y C A N  G A S   TL V
Sbjct: 60  PE-DSGTYTCAATNSSGSASS-GTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 56.0 bits (135), Expect = 1e-10
 Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGK 197
           P S  V   E  TL+C+A G P P + WYK G  + AE G   +   +GS   L++ +  
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSV-SRSGSTSTLTISNVT 59

Query: 198 KDTDSGVYWCVARNELGFARSKNATLDV 225
            + DSG Y C A N  G A S   TL V
Sbjct: 60  PE-DSGTYTCAATNSSGSASS-GTTLTV 85

Length = 85

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 5/76 (6%)

Query: 151 LNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFFLSLVHGKKDTDSGVYWCVA 209
           L C A G+P P+I W KDG          R+ ++P   +FF+  V   K  D+GVY C A
Sbjct: 3   LECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDV---KIEDTGVYSCTA 59

Query: 210 RNELGFARSKNATLDV 225
           +N  G   S NATL V
Sbjct: 60  QNTAGSI-SANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 48.9 bits (116), Expect = 4e-08
 Identities = 33/81 (40%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYP-EPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           P IT  P S  V      TL C A+G P  P I WY++GS      G    L  +GS   
Sbjct: 2   PVITVSP-SPSVTSGGGVTLTCSAEGGPPPPTISWYRNGS----ISGGSGGLGSSGSTLT 56

Query: 191 LSLVHGKKDTDSGVYWCVARN 211
           LS V      DSG Y CVA N
Sbjct: 57  LSSV---TSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 48.4 bits (115), Expect = 7e-08
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 150 TLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA 209
           +L C A+G P PR+ W K+G  ++ ++     L+  GS   +S V  +   D+G Y C+A
Sbjct: 2   SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYE---DTGAYTCIA 58

Query: 210 RNELGFAR 217
           +NE G   
Sbjct: 59  KNEAGVDE 66

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 48.0 bits (114), Expect = 1e-07
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 7/62 (11%)

Query: 153 CKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE 212
           CKA G P P   W K+G  +++E   +RI + AG L    L      +DSG+Y CVA N+
Sbjct: 21  CKASGNPRPAYRWLKNGQPLASE---NRIEVEAGDLRITKLSL----SDSGMYQCVAENK 73

Query: 213 LG 214
            G
Sbjct: 74  HG 75

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 132 PRITEHPASAVVPRHEP---TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
           P   E P   + P        +LNC+A G P P   W  +G+ +  E  S   L+  G+L
Sbjct: 2   PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV-GGNL 60

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNAT 222
              +    K   D+G Y C+A N +G   S+ AT
Sbjct: 61  VISNPSKAK---DAGRYQCLASNIVGTVLSREAT 91

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 46.4 bits (110), Expect = 3e-07
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 150 TLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA 209
           TL C  DG+P P  +W++DG+ +S   G++ +     +L     +      DSG+Y+C A
Sbjct: 2   TLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTL----TLRSAGPDDSGLYYCCA 57

Query: 210 RNELGFA-RSKNATLDVA 226
            N  G    S+N TL + 
Sbjct: 58  HNAFGSVCSSQNFTLSII 75

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 45.9 bits (109), Expect = 5e-07
 Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 9/74 (12%)

Query: 153 CKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFFLSLVHGKKDTDSGVYWCVARN 211
           CK    P+P I W K   L++    S RI + P GSL  L++      +D G Y C A N
Sbjct: 8   CKPKAAPKPTISWSKGTELLTN---SSRICIWPDGSLEILNV----TKSDEGKYTCFAEN 60

Query: 212 ELGFARSKNATLDV 225
             G A S   +L V
Sbjct: 61  FFGKANS-TGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143282 cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

 Score = 45.3 bits (107), Expect = 7e-07
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 151 LNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLP-AGSLFFLSLVHGKKDTDSGVYWCVA 209
           + C+A G P P   W ++G+    +      + P  G+L    +   K +   GVY C A
Sbjct: 3   IQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTA 62

Query: 210 RNELGFARSKN 220
           RNE G A S N
Sbjct: 63  RNERGAAVSNN 73

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 77

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 45.3 bits (107), Expect = 7e-07
 Identities = 28/68 (41%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 151 LNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR 210
           + C A G PEP I W KDG  V+ E G   I  P G L     +      D G Y CVAR
Sbjct: 3   IPCSAQGDPEPTITWNKDGVQVT-ESGKFHI-SPEGYL----AIRDVGVADQGRYECVAR 56

Query: 211 NELGFARS 218
           N +G+A  
Sbjct: 57  NTIGYASV 64

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 45.0 bits (106), Expect = 8e-07
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 8/79 (10%)

Query: 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSH-RI-LLPAGSLFFLSLVHGKKDTDSGVYW 206
            T+ C A G P+P I W+KD   +  +  S+ RI  L +G+L     +   +++D G Y 
Sbjct: 1   ATMLCAASGNPDPEITWFKD--FLPVDTTSNGRIKQLRSGALQ----IENSEESDQGKYE 54

Query: 207 CVARNELGFARSKNATLDV 225
           CVA N  G   S  A L V
Sbjct: 55  CVATNSAGTRYSAPANLYV 73

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 45.1 bits (107), Expect = 8e-07
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 147 EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYW 206
           E   L+C+A+G P+P I W  +G  +       R  +  G+L   ++       D+ VY 
Sbjct: 2   ETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPN----DTAVYQ 57

Query: 207 CVARNELGFARSKNATLDV 225
           C A N  G+  + NA + V
Sbjct: 58  CNASNVHGYLLA-NAFVHV 75

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 132 PRITEHPASAVVPR---HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
           P   E P+S + P     E  TL C+A   P     W  +G+ +     S   L+ AG+L
Sbjct: 2   PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV-AGNL 60

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL 223
              +    +   D+G Y C+A N  G   S+ A L
Sbjct: 61  VINNPQKAR---DAGSYQCLAINRCGTVVSREANL 92

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 26/75 (34%), Positives = 29/75 (38%), Gaps = 20/75 (26%)

Query: 150 TLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGK-------KDTDS 202
            L C A+G P P I W K G       G     LPA    F +    K        + D 
Sbjct: 2   LLECIAEGLPTPEISWIKIG-------GE----LPADRTKFEN--FNKTLKIDNVSEEDD 48

Query: 203 GVYWCVARNELGFAR 217
           G Y C A N LG AR
Sbjct: 49  GEYRCTASNSLGSAR 63

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 9/77 (11%)

Query: 151 LNCKADGYPEPRIEWYKDGSLVSAE--IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV 208
           L C A G P P I W KDG     E  IG +++     +L   S+V      DSG Y C+
Sbjct: 14  LKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPS----DSGKYTCI 69

Query: 209 ARNELGFARSKNATLDV 225
             N+ G   S N T  V
Sbjct: 70  VENKYG---SINHTYKV 83

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 10/82 (12%)

Query: 150 TLNCKADGYPEPRIEW-YKDGSLV-----SAEIGSHRILLPAGSLFFLSLVHGKKDTDSG 203
           TLNC A+GYP P I W +  G        +  +     LL  GSL    L+    + DSG
Sbjct: 2   TLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSL----LIKHVLEEDSG 57

Query: 204 VYWCVARNELGFARSKNATLDV 225
            Y C   N++G   SK+  L V
Sbjct: 58  YYLCKVSNDVGADASKSMVLTV 79

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 43.4 bits (102), Expect = 5e-06
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 132 PRITEHPASAVVP---RHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
           P   + P  A+ P     +   LNC+A G P P   W ++G+ +  E   +R  L  G+L
Sbjct: 2   PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTE-SDYRYSLIDGNL 60

Query: 189 FFLSLVHGKKDT-DSGVYWCVARNELGFARSKNATL 223
               ++    +  DSG Y C+A N +G   S+ A L
Sbjct: 61  ----IISNPSEVKDSGRYQCLATNSIGSILSREALL 92

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 42.5 bits (100), Expect = 7e-06
 Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 7/71 (9%)

Query: 147 EPTTLNCKADGYPEPRIEW-YKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVY 205
           +  TL CKA G PEP I W   DG L+S    S  ++   G+L    L+   KDT  G +
Sbjct: 2   QRATLRCKARGDPEPAIHWISPDGKLISNS--SRTLVYDNGTLDI--LITTVKDT--GSF 55

Query: 206 WCVARNELGFA 216
            C+A N  G A
Sbjct: 56  TCIASNAAGEA 66

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 43.0 bits (101), Expect = 8e-06
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 132 PRITEHPASAVVPRHE---PTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
           P   E P   + P        ++NC+A   P P  +W K+   +  ++ + R  +  G+L
Sbjct: 2   PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDI--DLTNDRYSMVGGNL 59

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLD 224
               + +  K  D+G Y C+  N  G  RS+ ATL 
Sbjct: 60  V---INNPDKYKDAGRYVCIVSNIYGKVRSREATLS 92

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 42.4 bits (100), Expect = 9e-06
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 150 TLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTD-SGVYWCV 208
            + C+A G P P   W ++G+    E      + P      +  ++G +  D  G Y C 
Sbjct: 2   VIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCY 61

Query: 209 ARNELGFARSKNATL 223
           A NELG A S    L
Sbjct: 62  ASNELGTAISNEIHL 76

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 147 EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYW 206
           +  TL C ADG+PEP + W KDG  + +    +        +  L +       D   Y 
Sbjct: 19  QSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDV----DKLDEAEYT 74

Query: 207 CVARNELG 214
           C+A N+ G
Sbjct: 75  CIAENKAG 82

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 31/87 (35%), Positives = 38/87 (43%), Gaps = 11/87 (12%)

Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRILLPAGSLFFLSLVHGKKDT 200
           VP        C A G P P + W K+G     E  IG +++     SL   S+V     +
Sbjct: 6   VPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV----PS 61

Query: 201 DSGVYWCVARNELGFARSKNAT--LDV 225
           D G Y CV  NE G   S N T  LDV
Sbjct: 62  DKGNYTCVVENEYG---SINHTYHLDV 85

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 30/76 (39%), Positives = 33/76 (43%), Gaps = 10/76 (13%)

Query: 151 LNCKADGYPEPRIEWYKDGS-LVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA 209
           L C A G P P I W KD   L   EIG  R        + LSL + K + DSG Y C  
Sbjct: 14  LKCVASGNPRPDITWLKDNKPLTPTEIGESR-----KKKWTLSLKNLKPE-DSGKYTCHV 67

Query: 210 RNELGFARSKNATLDV 225
            N  G     NAT  V
Sbjct: 68  SNRAG---EINATYKV 80

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143236 cd05759, Ig2_KIRREL3-like, Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 14/87 (16%)

Query: 148 PTTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRILLPAG------SLFFLSLVHGKKDT 200
           P  L C+A G  P   I W++DG ++       + LL  G      S   ++      D 
Sbjct: 1   PYNLTCRARGAKPAAEIIWFRDGEVLDGAT-YSKELLKDGKRETTVSTLPIT----PSDH 55

Query: 201 DSG-VYWCVARNE-LGFARSKNATLDV 225
           D+G  + C ARNE L   +  + TLDV
Sbjct: 56  DTGRTFTCRARNEALPTGKETSVTLDV 82

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Length = 82

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 39.8 bits (93), Expect = 6e-05
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 151 LNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFFLSLVHGKKDTDSGVYWCVA 209
           L C+    P P+I W K+  ++     + RI L          L+      D+G Y   A
Sbjct: 3   LECRVSAIPPPQIFWKKNNEML--TYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSA 60

Query: 210 RNELGFARSKNATLDV 225
            NE G   S NA LDV
Sbjct: 61  VNEAGVV-SCNARLDV 75

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 8/93 (8%)

Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAG-SLFFLS 192
             + P + VV      T+ C A+G P P++EW   G +V     +    L     ++ L 
Sbjct: 3   PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQ---TRTDTLETTVDIYNLQ 59

Query: 193 LVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           L +   +T + V  C A N +G     N ++ V
Sbjct: 60  LSNITSETQTTVT-CTAENPVG---QANVSVQV 88

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 147 EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYW 206
           E   L+C+ +G P P I W  +G+ +       R  + +G+L    +    + +D+ VY 
Sbjct: 2   ETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDV----QPSDTAVYQ 57

Query: 207 CVARNELG 214
           C ARN  G
Sbjct: 58  CEARNRHG 65

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 147 EPTTLNCKADGYPEPRIEWYKDGSLV--SAEIGSHRILLPAGSLFFLSLVHGKKDTDSGV 204
              TL C   G P+  + W+K+G  +  S  +G+    + + +L   ++     + DSG 
Sbjct: 2   SSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNV---TPE-DSGT 57

Query: 205 YWCVA 209
           Y CV 
Sbjct: 58  YTCVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 10/89 (11%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE---IGSHRILLPAGSL 188
           P+IT       +   E  TL C+A G P P I W      +S+E   +  H ++     +
Sbjct: 3   PKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARV 62

Query: 189 FFLSLVHGKKD---TDSGVYWCVARNELG 214
             L+L    K    TD+G Y C A N +G
Sbjct: 63  SSLTL----KYIQYTDAGEYLCTASNTIG 87

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143276 cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 12/73 (16%)

Query: 147 EPTTLNCKADGYPEPRIEWYKDGSLVSAEIG----SHRILLPAGSLFFLSLVHGKKDTDS 202
           E  TL C+A+G P+P I W  +G  V  EI     S ++    G     S V   ++  S
Sbjct: 2   EDGTLICRANGNPKPSISWLTNG--VPIEIAPTDPSRKV---DGDTIIFSKV---QERSS 53

Query: 203 GVYWCVARNELGF 215
            VY C A NE G+
Sbjct: 54  AVYQCNASNEYGY 66

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 76

>gnl|CDD|143226 cd05749, Ig2_Tyro3_like, Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query: 135 TEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSL 193
           T  P    V  + P  L C+A G PEP  I W++ GS +           PA S    S+
Sbjct: 2   TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--------PAPS---PSV 50

Query: 194 VHGKKDTDSGVYWCVARNELGFARSKNATL 223
           ++     ++  + C A N  G   S+  T+
Sbjct: 51  LNVPGLNETSKFSCEAHNAKGVTTSRTGTV 80

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and cell proliferation. Length = 81

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 37.2 bits (86), Expect = 6e-04
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 8/67 (11%)

Query: 153 CKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFFLSLVHGKKDTDSGVYWCVARN 211
           C+  G P P ++W K+G +V   I S    ++   +L  L LV     +D G Y C+A N
Sbjct: 6   CEVTGKPTPTVKWVKNGDMV---IPSDYFKIVKEHNLQVLGLVK----SDEGFYQCIAEN 58

Query: 212 ELGFARS 218
           ++G  ++
Sbjct: 59  DVGNVQA 65

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 8/66 (12%)

Query: 153 CKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSL-VHGKKDTDSGVYWCVARN 211
           C+A GYP+P I W K GS +S +     ++L +G+L    + +H     D G Y C A N
Sbjct: 9   CEAQGYPQPVIAWTKGGSQLSVD--RRHLVLSSGTLRISRVALH-----DQGQYECQAVN 61

Query: 212 ELGFAR 217
            +G  R
Sbjct: 62  IVGSQR 67

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143271 cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

 Score = 34.9 bits (80), Expect = 0.003
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 151 LNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL 183
           L  K   YP P  +WYKDG L+S +   H + +
Sbjct: 3   LPVKVAAYPPPEFQWYKDGKLISGKHSQHSLQI 35

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. Length = 67

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPA---GSLF 189
            I   P S  V   E    +C  DG P P + W ++G ++ +   S R  + +    S F
Sbjct: 5   TILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVS---SQRHQITSTEYKSTF 61

Query: 190 FLSLVHGKKDTDSGVYWCVARNELG 214
            +S V     +D G Y  V  N  G
Sbjct: 62  EISKVQM---SDEGNYTVVVENSEG 83

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 34.7 bits (80), Expect = 0.003
 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 10/77 (12%)

Query: 150 TLNCKADGYPEPRIEWYK-DGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV 208
              C+  G P P + W K DG L     G   I L   SL     +      D G Y C 
Sbjct: 2   EFQCEVGGDPVPTVLWRKEDGEL---PKGRAEI-LDDKSL----KIRNVTAGDEGSYTCE 53

Query: 209 ARNELGFARSKNATLDV 225
           A N +G   +  A+L V
Sbjct: 54  AENMVGKIEAS-ASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	238
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.82
KOG3513|consensus	1051		99.81
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.79
KOG3513|consensus	1051		99.76
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.75
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.72
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.72
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.72
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.72
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.71
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.71
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.71
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.71
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.7
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.7
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.7
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.7
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.7
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.69
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.69
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.69
KOG4221|consensus	1381		99.69
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.69
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.69
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.69
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.68
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.67
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.67
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.67
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.67
KOG4194|consensus	873		99.66
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.66
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.66
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.66
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.65
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.65
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.65
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.65
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.64
KOG4221|consensus	1381		99.64
KOG4194|consensus	873		99.64
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.63
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.63
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.63
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.63
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.62
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.61
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.61
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.61
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.61
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.61
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.61
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.59
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.59
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.59
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.59
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.59
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.58
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.58
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.58
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.58
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.57
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.57
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.57
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.56
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.56
PHA02785	326	IL-beta-binding protein; Provisional	99.56
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.55
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.55
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.55
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.54
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.54
KOG4222|consensus	1281		99.54
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.54
KOG4222|consensus	1281		99.54
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.53
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.53
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.53
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.53
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.52
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.52
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.5
PHA02826	227	IL-1 receptor-like protein; Provisional	99.49
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.48
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.48
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.45
PHA02785	326	IL-beta-binding protein; Provisional	99.44
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.43
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.42
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.4
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.38
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.37
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.36
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.34
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.31
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.31
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.31
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.29
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.27
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.26
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.25
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.21
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.19
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.13
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.11
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.05
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.05
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.03
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.02
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.0
smart00409	86	IG Immunoglobulin.	99.0
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.98
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.95
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.89
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.88
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.87
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.85
PHA02826	227	IL-1 receptor-like protein; Provisional	98.83
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.83
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.82
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.7
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.64
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.59
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.55
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.53
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.53
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.5
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.49
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.48
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.46
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.42
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.42
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.39
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.38
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.36
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.34
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.33
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.3
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.28
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.27
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.26
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.22
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.22
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.18
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.16
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.16
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.09
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.06
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.05
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.04
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.03
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.02
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.01
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.99
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.95
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.89
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.88
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.86
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.86
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.83
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.82
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	97.77
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.75
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	97.74
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.72
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	97.69
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.68
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.67
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.62
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	97.61
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.61
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	97.6
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.59
KOG3515|consensus	741		97.58
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	97.57
smart00407	75	IGc1 Immunoglobulin C-Type.	97.56
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.54
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.51
KOG3515|consensus	741		97.44
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.41
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.38
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	97.35
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	97.34
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	97.33
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.33
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	97.32
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.31
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.3
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	97.29
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.28
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	97.26
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.24
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	97.23
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.22
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	97.18
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	97.17
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.15
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.11
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	97.09
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.03
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	97.02
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.02
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	96.98
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	96.95
smart00406	81	IGv Immunoglobulin V-Type.	96.93
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	96.93
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	96.92
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	96.88
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	96.87
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	96.86
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	96.86
KOG1480|consensus	909		96.85
PHA03376	221	BARF1; Provisional	96.84
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	96.84
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	96.8
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	96.8
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	96.77
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	96.76
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	96.76
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	96.74
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	96.73
PHA03376	221	BARF1; Provisional	96.67
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	96.65
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	96.65
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	96.61
PHA02633	63	hypothetical protein; Provisional	96.6
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	96.6
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	96.59
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	96.55
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	96.55
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	96.55
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	96.54
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.54
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	96.53
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	96.5
KOG4597|consensus	560		96.36
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	96.31
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	96.31
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	96.29
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	96.27
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	96.26
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	96.19
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	96.13
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	96.11
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	96.07
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	96.07
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	96.0
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	96.0
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	95.97
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	95.97
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	95.93
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	95.92
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	95.9
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	95.84
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	95.84
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	95.81
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	95.8
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	95.77
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	95.65
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	95.57
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	95.53
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	95.51
PHA03042	286	CD47-like protein; Provisional	95.48
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	95.47
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	95.31
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	95.24
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	95.16
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	95.04
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	94.89
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	94.83
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	94.82
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	94.73
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	94.6
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	94.59
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	94.59
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	94.48
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	94.27
smart00408	63	IGc2 Immunoglobulin C-2 Type.	94.2
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	94.16
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	94.02
PF00047	64	ig: Immunoglobulin domain The Prosite family only	93.91
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	93.82
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	93.32
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	93.31
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	92.99
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	92.96
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	92.88
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	92.79
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	92.75
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	92.58
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	92.43
PHA03052	69	Hypothetical protein; Provisional	92.3
PHA03269	566	envelope glycoprotein C; Provisional	92.1
PHA02865	338	MHC-like TNF binding protein; Provisional	91.79
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	91.65
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	90.9
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	90.58
PHA03270	466	envelope glycoprotein C; Provisional	90.53
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	90.35
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	89.77
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	89.39
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	89.1
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	88.66
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	87.8
PHA03273	486	envelope glycoprotein C; Provisional	87.27
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	87.15
PHA02982	251	hypothetical protein; Provisional	86.35
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	85.32
PHA03271	490	envelope glycoprotein C; Provisional	84.36
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	84.03
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	82.25
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	82.05
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	81.52

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.82  E-value=6.9e-19  Score=121.47  Aligned_cols=97  Identities=22%  Similarity=0.277  Sum_probs=79.4

Q ss_pred             CEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       132 P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      |.|...+.++.+..|+.+.|.|.+.|.|+|.+.|+|+|..|... ....+........  +.|..+..+|+|.|+|.|.|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~-~~~~~~~~~~~s~--L~I~~~~~~D~G~Ytc~a~N   77 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEG-EGIKIENTENSSK--LTITEGQQEHCGCYTLEVEN   77 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCC-CcEEEEecCCeeE--EEECCCChhhCEEEEEEEEc
Confidence            67888889999999999999999999999999999999998743 2222222222222  23778899999999999999


Q ss_pred             CCCceeEEEEEEEEccCCCCC
Q psy18191        212 ELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       212 ~~G~~~s~~~~L~V~~~~~~~  232 (238)
                      .+|... ..+.|.|.++|++|
T Consensus        78 ~~G~~~-~~~~l~V~~~P~pP   97 (98)
T cd05762          78 KLGSRQ-AQVNLTVVDKPDPP   97 (98)
T ss_pred             CCCcee-EEEEEEEecCCCCC
Confidence            999997 59999999999887

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>KOG3513|consensus

Probab=99.81  E-value=2.1e-18  Score=156.86  Aligned_cols=150  Identities=23%  Similarity=0.355  Sum_probs=120.1

Q ss_pred             CCCccEEEecccc-ccccce-----EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEE
Q psy18191         61 YPKPICLRFQDLL-PQSKQG-----LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRI  134 (238)
Q Consensus        61 ~~~~~~~w~~~~~-~~~~~g-----~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i  134 (238)
                      .|.|++.|.|.+. +....-     -.-|.|.++..+|+|.|.|.+.|.+.  .           ........+.++|.+
T Consensus       268 ~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G--~-----------~~~~~~v~v~a~P~w  334 (1051)
T KOG3513|consen  268 NPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRG--S-----------ATHSGHVTVYAPPYW  334 (1051)
T ss_pred             CCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccc--c-----------ceeeEEEEEecCchh
Confidence            4588999999877 443221     23577788999999999988877533  1           111222336689999


Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      +..+++..+..|+++.|.|.+.|.|.|.|+|++||.++.......+..+..|.|.+..+    +..|+|.|+|.|+|.+|
T Consensus       335 ~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v----~~~dsg~YQC~A~Nk~G  410 (1051)
T KOG3513|consen  335 LQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNV----QESDSGVYQCIAENKYG  410 (1051)
T ss_pred             hcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEec----ccccCeEEEeeeecccc
Confidence            99999999999999999999999999999999999999865334456778899986666    99999999999999999


Q ss_pred             ceeEEEEEEEEccC
Q psy18191        215 FARSKNATLDVAGK  228 (238)
Q Consensus       215 ~~~s~~~~L~V~~~  228 (238)
                      ... ..+.|.|...
T Consensus       411 ~i~-anA~L~V~a~  423 (1051)
T KOG3513|consen  411 TIY-ANAELKVLAS  423 (1051)
T ss_pred             eEe-eeeEEEEEcc
Confidence            997 4999999876

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.79  E-value=2.3e-18  Score=116.59  Aligned_cols=88  Identities=26%  Similarity=0.336  Sum_probs=73.6

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      +|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|++++..+..   ..++...++.|.    |..+..+|+|.|+|.|.
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~---~~~~~~~~~~L~----I~~v~~~D~G~Y~C~A~   73 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPA---TAEISMSGAVLK----IFNIQPEDEGTYECEAE   73 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCC---CCEEecCCCEEE----ECcCChhhCEEEEEEEE
Confidence            57888888899999999999999999999999999999987753   233444455565    45559999999999999


Q ss_pred             eCCCceeEEEEEEEEc
Q psy18191        211 NELGFARSKNATLDVA  226 (238)
Q Consensus       211 N~~G~~~s~~~~L~V~  226 (238)
                      |..|... ..+.|.|+
T Consensus        74 N~~G~~~-~~~~l~V~   88 (88)
T cd05851          74 NIKGKDK-HQARVYVQ   88 (88)
T ss_pred             cCCCceE-EEEEEEEC
Confidence            9999996 59999884

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>KOG3513|consensus

Probab=99.76  E-value=1e-17  Score=152.37  Aligned_cols=193  Identities=19%  Similarity=0.280  Sum_probs=135.1

Q ss_pred             hhhcccceeEEeecCCCCCCCCCCCCcceeeeeccccccCCC--------------cccccCCCccEEEeccccccccc-
Q psy18191         14 FVENSSQRCIKINLPKASHSPSSRPDQNYLRVSGFADLTQPP--------------ARGGFYPKPICLRFQDLLPQSKQ-   78 (238)
Q Consensus        14 ~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~v~~~~~~~~pp--------------~~~~~~~~~~~~w~~~~~~~~~~-   78 (238)
                      +.+.+-|.|++.|.-.....      ..++.+...+.-...|              +..-..|.|++.|++++.++... 
T Consensus       303 ~~D~G~Y~C~AeN~~G~~~~------~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~  376 (1051)
T KOG3513|consen  303 YEDAGEYECIAENSRGSATH------SGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAE  376 (1051)
T ss_pred             cCCCeEEEEEEeccccccee------eEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccC
Confidence            56788999999998774432      2344444333222222              22224568999999999876532 


Q ss_pred             e-------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCc-cCCEEEeCCCc--eEEeCCCc
Q psy18191         79 G-------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGY-RVPRITEHPAS--AVVPRHEP  148 (238)
Q Consensus        79 g-------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~-~~P~i~~~~~~--~~~~~G~~  148 (238)
                      .       .--|++.++...|+|.|.|.+.|.+.      .++       ..+.+.|. .+|.|...+..  ..+..|.+
T Consensus       377 r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G------~i~-------anA~L~V~a~~P~f~~~p~~~~~~a~~g~~  443 (1051)
T KOG3513|consen  377 RDPRYKIDDGTLIISNVQESDSGVYQCIAENKYG------TIY-------ANAELKVLASAPVFPLNPVERKVMAVVGGT  443 (1051)
T ss_pred             CCcceEEeCCEEEEEecccccCeEEEeeeecccc------eEe-------eeeEEEEEccCCCCCCCccceEEEEEeCCe
Confidence            1       13566778888999999988877533      221       11112122 34666665443  46688999


Q ss_pred             EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccC
Q psy18191        149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~  228 (238)
                      +.+.|.+.+.|.|.++|++++..+..  +++.....+|+|.|..+    +.+|+|.|+|.|.|.+|.+.+ .+.|.|..+
T Consensus       444 v~i~C~~~asP~p~~~W~k~~~~~~~--~~r~~i~edGtL~I~n~----t~~DaG~YtC~A~N~~G~a~~-~~~L~Vkd~  516 (1051)
T KOG3513|consen  444 VTIDCKPFASPKPKVSWLKGGEKLLQ--SGRIRILEDGTLEISNV----TRSDAGKYTCVAENKLGKAES-TGNLIVKDA  516 (1051)
T ss_pred             EEEeeccCCCCcceEEEEcCCccccc--CceEEECCCCcEEeccc----CcccCcEEEEEEEcccCccce-EEEEEEecC
Confidence            99999999999999999999984443  45555668999985555    999999999999999999985 999999877


Q ss_pred             CCCC
Q psy18191        229 ISTA  232 (238)
Q Consensus       229 ~~~~  232 (238)
                      +.+.
T Consensus       517 tri~  520 (1051)
T KOG3513|consen  517 TRIT  520 (1051)
T ss_pred             ceEE
Confidence            6543

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.75  E-value=3.8e-17  Score=113.03  Aligned_cols=95  Identities=55%  Similarity=0.981  Sum_probs=75.9

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeecc---CCccEEEecCCcEEEEEeec-CCCCCCCeEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE---IGSHRILLPAGSLFFLSLVH-GKKDTDSGVYW  206 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~---~~~~~~~~~~~~l~~~~vi~-~v~~~d~G~Y~  206 (238)
                      +|.|...|.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+...   .........++.+.+..++. .+..+|+|.|+
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            588888899999999999999999999999999999999988752   12233445566665544432 23789999999


Q ss_pred             EEEEeCCCceeEEEEEEEE
Q psy18191        207 CVARNELGFARSKNATLDV  225 (238)
Q Consensus       207 C~a~N~~G~~~s~~~~L~V  225 (238)
                      |.|.|.+|...+..+.|.|
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            9999999996667888877

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.72  E-value=6.1e-17  Score=105.98  Aligned_cols=74  Identities=35%  Similarity=0.619  Sum_probs=61.0

Q ss_pred             CCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEE
Q psy18191        145 RHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLD  224 (238)
Q Consensus       145 ~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~  224 (238)
                      +|+++.|.|.+.|.|.|.+.|+|++..+...  .......++.|.+..+    ..+|+|.|+|.|.|.+|... ..+.|.
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~--~~~~~~~~~~L~I~~v----~~~D~G~Y~C~A~N~~G~~~-~~~~L~   73 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVD--RRHLVLSSGTLRISRV----ALHDQGQYECQAVNIVGSQR-TVAQLT   73 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCC--CCeEEccCCeEEEeeC----CHHhCEEEEEEEEeCCCcee-EEEEEe
Confidence            5899999999999999999999999987642  2333445667765554    99999999999999999997 488887


Q ss_pred             E
Q psy18191        225 V  225 (238)
Q Consensus       225 V  225 (238)
                      |
T Consensus        74 V   74 (74)
T cd05745          74 V   74 (74)
T ss_pred             C
Confidence            5

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.72  E-value=1.5e-16  Score=108.99  Aligned_cols=87  Identities=33%  Similarity=0.626  Sum_probs=67.2

Q ss_pred             CEEEeCCCceEEe---CCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCC-CCCCeEEEE
Q psy18191        132 PRITEHPASAVVP---RHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKK-DTDSGVYWC  207 (238)
Q Consensus       132 P~i~~~~~~~~~~---~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~-~~d~G~Y~C  207 (238)
                      |.|+..|.++.+.   +|+++.|.|.+.|.|.|.++|+++|..+... ...++...++.|.+.    .+. .+|+|.|+|
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~-~~~~~~~~~g~L~i~----~~~~~~D~G~Y~C   76 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTE-SDYRYSLIDGNLIIS----NPSEVKDSGRYQC   76 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccC-CCceEEeeCCeEEEc----cCCccCcCEEEEE
Confidence            6777777776654   4789999999999999999999999988643 233445556776543    334 689999999


Q ss_pred             EEEeCCCceeEEEEEE
Q psy18191        208 VARNELGFARSKNATL  223 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L  223 (238)
                      .|.|.+|...+..+.|
T Consensus        77 ~A~N~~G~~~S~~~~l   92 (94)
T cd05848          77 LATNSIGSILSREALL   92 (94)
T ss_pred             EEEcCCCeEEeccEEE
Confidence            9999999997655554

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.72  E-value=1.8e-16  Score=107.32  Aligned_cols=88  Identities=25%  Similarity=0.363  Sum_probs=71.0

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      ||.+...|.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...   ......++.|.    |..++.+|+|.|+|.|.
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~---~~~~~~~~~L~----i~~v~~~D~G~Y~C~a~   73 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSS---AEISMSGAVLK----IPNIQFEDEGTYECEAE   73 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCc---cEEEEeCCEEE----ECCCCcccCEEEEEEEE
Confidence            456667788889999999999999999999999999988766532   22224456665    55569999999999999


Q ss_pred             eCCCceeEEEEEEEEc
Q psy18191        211 NELGFARSKNATLDVA  226 (238)
Q Consensus       211 N~~G~~~s~~~~L~V~  226 (238)
                      |..|... ..+.|.|+
T Consensus        74 N~~G~~~-~~~~l~V~   88 (88)
T cd04968          74 NIKGKDT-HQGRIYVQ   88 (88)
T ss_pred             ECCCcEE-EEEEEEEC
Confidence            9999996 59998874

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.72  E-value=2.5e-16  Score=106.53  Aligned_cols=86  Identities=20%  Similarity=0.311  Sum_probs=66.3

Q ss_pred             CCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEe-cCCc-EEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEE
Q psy18191        146 HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL-PAGS-LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL  223 (238)
Q Consensus       146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~-l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L  223 (238)
                      |+.+.|.|.+.|.|+|.+.|++++..+........+.. ..+. ....+.|..+..+|+|.|+|.|.|.+|... ..+.|
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~-~~~~L   79 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDR-GIIQL   79 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcce-EEEEE
Confidence            78999999999999999999999988764321111221 1222 222334777899999999999999999997 59999


Q ss_pred             EEccCCCCC
Q psy18191        224 DVAGKISTA  232 (238)
Q Consensus       224 ~V~~~~~~~  232 (238)
                      .|..+|++|
T Consensus        80 ~V~~~P~~P   88 (88)
T cd05735          80 TVQEPPDPP   88 (88)
T ss_pred             EEeCCCCCC
Confidence            999988765

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.71  E-value=2.6e-16  Score=107.83  Aligned_cols=89  Identities=33%  Similarity=0.547  Sum_probs=69.0

Q ss_pred             CEEEeCCCceEEeCC---CcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        132 PRITEHPASAVVPRH---EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       132 P~i~~~~~~~~~~~G---~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      |.|...|.++.+.+|   +++.|.|.+.|+|.|.++|+++|..+... ...++...++.|.+..+   +...|+|.|+|.
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~g~L~I~~~---~~~~D~G~Y~C~   77 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFA-PESRYTLVAGNLVINNP---QKARDAGSYQCL   77 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccC-CCceEEEECCeEEEccC---CccCcCEEEEEE
Confidence            677777888877666   57999999999999999999999988643 22344445677765432   246899999999


Q ss_pred             EEeCCCceeEEEEEEE
Q psy18191        209 ARNELGFARSKNATLD  224 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~  224 (238)
                      |.|..|...+..+.|.
T Consensus        78 A~N~~G~~~s~~a~l~   93 (94)
T cd05850          78 AINRCGTVVSREANLR   93 (94)
T ss_pred             EEcCcCcEEEEEEEEe
Confidence            9999999977666664

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.71  E-value=3.2e-16  Score=108.02  Aligned_cols=95  Identities=27%  Similarity=0.393  Sum_probs=69.8

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccC--CccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEI--GSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~--~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      ++|+|...+....+..|+.+.|.|.+.|.|.|.++|++++..+....  ...++..........+.|+.++.+|+|.|+|
T Consensus         1 ~~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C   80 (97)
T cd05869           1 AKPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLC   80 (97)
T ss_pred             CCceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEE
Confidence            36888877776667778999999999999999999999987765321  1112222221111223367779999999999


Q ss_pred             EEEeCCCceeEEEEEEEE
Q psy18191        208 VARNELGFARSKNATLDV  225 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V  225 (238)
                      .|.|.+|... .+++|.|
T Consensus        81 ~A~N~~G~~~-~~~~l~v   97 (97)
T cd05869          81 TASNTIGQDS-QSMYLEV   97 (97)
T ss_pred             EEecCCCCee-EEEEEEC
Confidence            9999999996 5888875

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.71  E-value=1.4e-16  Score=104.81  Aligned_cols=75  Identities=31%  Similarity=0.582  Sum_probs=61.8

Q ss_pred             CCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        146 HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      |+++.|.|.+.|.|.|.++|+++|..+.......+....++.|.    |..+..+|+|.|+|.|.|..|...+ .++|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~----I~~~~~~D~G~Y~C~a~N~~G~~~~-~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALI----LTDVQPSDTAVYQCEARNRHGNLLA-NAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEE----ECCCChhhCEEEEEEEECCCCeEEE-EEEEEE
Confidence            78899999999999999999999998865322334445566665    5566999999999999999999974 899887

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.71  E-value=1.7e-16  Score=106.72  Aligned_cols=83  Identities=33%  Similarity=0.519  Sum_probs=69.0

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      ...|.+..+..|+++.|.|.+.|.|.|.+.|++++..+..   ..++...++.|.+..+    ..+|+|.|+|.|.|..|
T Consensus         3 ~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~---~~~~~~~~~~L~i~~~----~~~D~G~Y~C~a~N~~G   75 (85)
T cd05728           3 LKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLAS---ENRIEVEAGDLRITKL----SLSDSGMYQCVAENKHG   75 (85)
T ss_pred             cccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCC---CCeEEEeCCEEEEeeC----CHHHCEEEEEEEECCCC
Confidence            4457788999999999999999999999999999998763   2344456677775554    99999999999999999


Q ss_pred             ceeEEEEEEEE
Q psy18191        215 FARSKNATLDV  225 (238)
Q Consensus       215 ~~~s~~~~L~V  225 (238)
                      ... .++.|.|
T Consensus        76 ~~~-~~~~l~V   85 (85)
T cd05728          76 TIY-ASAELAV   85 (85)
T ss_pred             eEE-EEEEEEC
Confidence            996 4888865

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.70  E-value=4.2e-16  Score=104.93  Aligned_cols=83  Identities=20%  Similarity=0.331  Sum_probs=63.9

Q ss_pred             ceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEE
Q psy18191        140 SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSK  219 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~  219 (238)
                      .+.+..|+.+.|.|.+.|.|.|.+.|++++.++........+.....  ...+.|..+..+|+|.|+|.|.|.+|+.. .
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~--~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~-~   80 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKD--LSSFVIEGAEREDEGVYTITVTNPVGEDH-A   80 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCC--eEEEEECCCccCcCEEEEEEEEeCCCcEE-E
Confidence            56788999999999999999999999999998875311122222222  11223778899999999999999999996 5


Q ss_pred             EEEEEE
Q psy18191        220 NATLDV  225 (238)
Q Consensus       220 ~~~L~V  225 (238)
                      .+.|.|
T Consensus        81 ~~~l~V   86 (86)
T cd05894          81 SLFVKV   86 (86)
T ss_pred             EEEEEC
Confidence            888765

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.70  E-value=3.3e-16  Score=106.89  Aligned_cols=90  Identities=22%  Similarity=0.382  Sum_probs=69.8

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .||.|...|.+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+...  ........+.. ....|..+..+|+|.|+|.|
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~--~~~~~~~~~~~-~~L~i~~~~~~D~G~Y~C~a   78 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSS--QRHQITSTEYK-STFEISKVQMSDEGNYTVVV   78 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCC--CcEEEEEcCCe-eEEEECCCCcccCEeEEEEE
Confidence            4788888899999999999999999999999999999999887642  22222222111 11126777999999999999


Q ss_pred             EeCCCceeEEEEEE
Q psy18191        210 RNELGFARSKNATL  223 (238)
Q Consensus       210 ~N~~G~~~s~~~~L  223 (238)
                      .|.+|... ..+.|
T Consensus        79 ~N~~G~~~-~~~~l   91 (92)
T cd05747          79 ENSEGKQE-AQFTL   91 (92)
T ss_pred             EcCCCCEe-EEEEe
Confidence            99999986 47765

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.70  E-value=1.2e-16  Score=104.11  Aligned_cols=73  Identities=30%  Similarity=0.503  Sum_probs=60.1

Q ss_pred             CCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        146 HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      |+++.|.|.+.|.|.|.+.|+|++..+..  ..+.....++.|.    |..++.+|+|.|+|.|.|..|+..+ ++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~--~~r~~~~~~g~L~----I~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVN--NSRISIWDDGSLE----ILNITKLDEGSYTCFAENNRGKANS-TGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEeccc--CCCEEEcCCCEEE----ECcCChhHCEEEEEEEECCCCceeE-EEEEEC
Confidence            68899999999999999999999987754  2333344667776    4555999999999999999999974 888875

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.70  E-value=5e-16  Score=106.66  Aligned_cols=92  Identities=43%  Similarity=0.750  Sum_probs=71.6

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecC-CCCCCCeEEEEEEEeC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHG-KKDTDSGVYWCVARNE  212 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~-v~~~d~G~Y~C~a~N~  212 (238)
                      |...|.+..+.+|+++.|.|.+.|.|.|.+.|+|+|..+............++.+.+..+... ....|.|.|+|.|.|.
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~   81 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQND   81 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECC
Confidence            345677888889999999999999999999999999988754232334455677766554211 1588999999999999


Q ss_pred             -CCceeEEEEEEEE
Q psy18191        213 -LGFARSKNATLDV  225 (238)
Q Consensus       213 -~G~~~s~~~~L~V  225 (238)
                       .|...+..+.|.|
T Consensus        82 ~~G~~~s~~~~l~v   95 (95)
T cd05722          82 SLGSIVSRTARLTV   95 (95)
T ss_pred             ccCcEEEeeeEEeC
Confidence             9998777888765

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.70  E-value=2.2e-16  Score=103.80  Aligned_cols=75  Identities=29%  Similarity=0.540  Sum_probs=59.7

Q ss_pred             CCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        146 HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      |+++.|.|.+.|.|.|.|+|+++|.++............++.|.    |..++..|.|.|+|.|.|..|...+ ++.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~----i~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTII----FSKVQERSSAVYQCNASNEYGYLLA-NAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEE----ECCCCHhhCEEEEEEEEcCCCEEEE-EEEEEe
Confidence            68899999999999999999999998864322222233344444    5566999999999999999999974 999887

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.69  E-value=3.7e-16  Score=106.72  Aligned_cols=88  Identities=28%  Similarity=0.538  Sum_probs=67.3

Q ss_pred             CCEEEeCCCceEEeCC---CcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCC-CCCCeEEE
Q psy18191        131 VPRITEHPASAVVPRH---EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKK-DTDSGVYW  206 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G---~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~-~~d~G~Y~  206 (238)
                      +|.|...|....+.++   +.+.|.|.+.|.|.|.++|++++..+...  ..+....++.|.+    ..+. .+|+|.|+
T Consensus         1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~--~~~~~~~~g~L~I----~~~~~~~D~G~Y~   74 (93)
T cd05849           1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLT--NDRYSMVGGNLVI----NNPDKYKDAGRYV   74 (93)
T ss_pred             CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCC--CCeEEEECCEEEE----CcCCcCCCCEEEE
Confidence            3677777777666554   47999999999999999999999887532  2344455677764    4444 58999999


Q ss_pred             EEEEeCCCceeEEEEEEE
Q psy18191        207 CVARNELGFARSKNATLD  224 (238)
Q Consensus       207 C~a~N~~G~~~s~~~~L~  224 (238)
                      |.|.|.+|...+..++|.
T Consensus        75 C~A~N~~G~~~s~~a~l~   92 (93)
T cd05849          75 CIVSNIYGKVRSREATLS   92 (93)
T ss_pred             EEEEeCcceEEEccEEEe
Confidence            999999999977666664

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.69  E-value=3.6e-16  Score=107.39  Aligned_cols=91  Identities=27%  Similarity=0.499  Sum_probs=69.2

Q ss_pred             CCEEEeCC--CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCC-cEEEEEeecCCCCCCCeEEEE
Q psy18191        131 VPRITEHP--ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAG-SLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       131 ~P~i~~~~--~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~-~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      ||.|...+  .+..+..|+++.|.|.+.|.|.|.+.|+++|..+... .........+ .|.    |..++.+|+|.|+|
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~-~~~~~~~~~~~~L~----I~~v~~~D~G~Y~C   75 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESG-EEKYSFNEDGSEMT----ILDVDKLDEAEYTC   75 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCC-CCEEEEeCCCCEEE----ECCCChhhCEEEEE
Confidence            45554432  4567899999999999999999999999999988643 1222222222 344    56669999999999


Q ss_pred             EEEeCCCceeEEEEEEEEcc
Q psy18191        208 VARNELGFARSKNATLDVAG  227 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~~  227 (238)
                      .|.|.+|... ..+.|.|..
T Consensus        76 ~a~N~~G~~~-~~~~L~V~~   94 (95)
T cd05730          76 IAENKAGEQE-AEIHLKVFA   94 (95)
T ss_pred             EEEcCCCeEE-EEEEEEEEe
Confidence            9999999997 599999864

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.69  E-value=3.1e-16  Score=102.57  Aligned_cols=74  Identities=28%  Similarity=0.510  Sum_probs=55.8

Q ss_pred             EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEec-CCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLP-AGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~-~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      +.|.|.+.|.|.|.+.|+|++..+..+.....+... .+..  .+.|+.+..+|+|.|+|.|.|.+|...+ .+.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~--~L~I~~~~~~D~G~Y~C~A~N~~G~~~~-~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRV--TLLIKNVNKKDAGWYTVSAVNEAGVATC-HARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcE--EEEECCCChhhCEEEEEEEEcCcCeEEE-EEEEeC
Confidence            479999999999999999999988743221122222 2321  1236777999999999999999999975 888875

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>KOG4221|consensus

Probab=99.69  E-value=1.2e-16  Score=145.65  Aligned_cols=193  Identities=22%  Similarity=0.285  Sum_probs=138.7

Q ss_pred             hcccceeEEeecCCCCCCCCCCCCcce----eeeeccccccCCCc-----------ccccCCCccEEEeccccccccce-
Q psy18191         16 ENSSQRCIKINLPKASHSPSSRPDQNY----LRVSGFADLTQPPA-----------RGGFYPKPICLRFQDLLPQSKQG-   79 (238)
Q Consensus        16 ~~~~~~~i~~~~~~~~~~~~~r~~~~~----~~v~~~~~~~~pp~-----------~~~~~~~~~~~w~~~~~~~~~~g-   79 (238)
                      +.+.|||+..+...-..|..++.....    .+-..|.+.+.+-.           .....++|++.|.+++..+...+ 
T Consensus       204 d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~  283 (1381)
T KOG4221|consen  204 DTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSY  283 (1381)
T ss_pred             CCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecce
Confidence            357899999888776666655433220    00001222222211           11234589999999988665542 


Q ss_pred             ------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEE
Q psy18191         80 ------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNC  153 (238)
Q Consensus        80 ------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C  153 (238)
                            ...|.+.+++.+|+|.|+|.+++..+.+.        ..     ....|..+|.|+..|.++.+.++.++.|.|
T Consensus       284 rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~id--------as-----aev~V~a~P~~~~~p~~l~A~e~~die~ec  350 (1381)
T KOG4221|consen  284 RIVLVGGSSLLISNATDDDSGKYTCRATNTNDSID--------AS-----AEVTVLAPPGFTKAPTTLVAHESMDIEFEC  350 (1381)
T ss_pred             EEEEecccceEEeccccccCceEEEEecCCCcccc--------cc-----eEEEEEcCCCCCCCCcceeeeeccceeEeC
Confidence                  34677889999999999998888544221        11     122367899999999999999999999999


Q ss_pred             EEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccC
Q psy18191        154 KADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       154 ~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~  228 (238)
                      .+.|.|.|.+.|+|+|..+..  ..++....++.+.++.+    -..|.|.|+|.|+|..|... ..+.|.|...
T Consensus       351 ~~~g~p~p~v~w~kNgd~~ip--sdy~ki~~~~~lrIlgi----~~sdeg~yQcvaen~~G~a~-a~a~l~vv~~  418 (1381)
T KOG4221|consen  351 PVSGKPIPTVRWYKNGDRIIP--SDYFKIVGGGNLRILGI----VKSDEGFYQCVAENDAGSAQ-AAAQLEVVPQ  418 (1381)
T ss_pred             CCCCCCcceEEEEecCcccCc--ccceEecCCCCcEEEEE----ecccchhhhhhhccCccccc-chhhheeccC
Confidence            999999999999999998886  34444455555888777    88999999999999999997 5888866544

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.69  E-value=4.7e-16  Score=105.76  Aligned_cols=88  Identities=27%  Similarity=0.439  Sum_probs=68.5

Q ss_pred             CEEEeC--CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        132 PRITEH--PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       132 P~i~~~--~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      |.|...  +.++.+.+|+++.|.|.+.|. .|.+.|++++..+...  .......++.|.    |..++.+|+|.|+|.|
T Consensus         2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~--~~~~~~~~~~L~----I~~v~~~D~G~Y~C~a   74 (91)
T cd05740           2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP--RLQLSNDNRTLT----FNNVTRSDTGHYQCEA   74 (91)
T ss_pred             CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC--CEEEeCCCCEEE----ECcCChhhCEEEEEEE
Confidence            566433  456789999999999999999 9999999999887632  111122334555    5556999999999999


Q ss_pred             EeCCCceeEEEEEEEEc
Q psy18191        210 RNELGFARSKNATLDVA  226 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V~  226 (238)
                      .|.+|...+..+.|.|.
T Consensus        75 ~N~~G~~~S~~~~L~V~   91 (91)
T cd05740          75 SNEVSNMTSDPYILNVN   91 (91)
T ss_pred             EcCCCCEEeeeEEEEeC
Confidence            99999988888888874

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.69  E-value=8.4e-16  Score=104.91  Aligned_cols=85  Identities=22%  Similarity=0.425  Sum_probs=65.7

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      |..+.+.+|+++.|.|.+.|.|.|.+.|++++..+... ....+....+... .+.|..+..+|+|.|+|.|.|.+|...
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~-~~~~~~~~~~~~~-~L~I~~v~~~D~G~Y~C~a~N~~G~~~   85 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALS-DHYNVKVEQGKYA-SLTIKGVSSEDSGKYGIVVKNKYGGET   85 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccC-CCEEEEEcCCCEE-EEEEccCChhhCEEEEEEEEECCCcce
Confidence            55688899999999999999999999999999988653 2223333323221 223677799999999999999999996


Q ss_pred             EEEEEEEE
Q psy18191        218 SKNATLDV  225 (238)
Q Consensus       218 s~~~~L~V  225 (238)
                       ..+.|.|
T Consensus        86 -~~~~v~v   92 (92)
T cd05737          86 -VDVTVSV   92 (92)
T ss_pred             -EEEEEeC
Confidence             4777764

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.69  E-value=5.2e-16  Score=100.66  Aligned_cols=71  Identities=27%  Similarity=0.578  Sum_probs=57.6

Q ss_pred             cEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        148 PTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       148 ~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      ++.|.|.+.|.|.|.++|+|+|..+...  .......++.+.+..    +..+|+|.|+|.|.|..|+.. .++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~--~~~~~~~~~~l~i~~----v~~~D~G~Y~C~A~N~~G~~~-~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPS--DYFKIVKEHNLQVLG----LVKSDEGFYQCIAENDVGNVQ-ASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCC--CCEEEEecCCEEEEc----CCcccCEEEEEEEEcCCCEEE-EEEEEEC
Confidence            4789999999999999999999887642  333334566776554    499999999999999999997 4888875

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.68  E-value=5.3e-16  Score=101.57  Aligned_cols=74  Identities=30%  Similarity=0.597  Sum_probs=55.9

Q ss_pred             EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEe-cCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      +.|.|.+.|.|.|.+.|+|++..+...  ..++.. .++.-...+.|..+..+|+|.|+|.|.|.+|+..+ ++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHN--TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSC-TARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCC--CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE-EEEEeC
Confidence            479999999999999999999988753  223322 22211111236777999999999999999999974 888875

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.67  E-value=1.4e-15  Score=103.43  Aligned_cols=86  Identities=22%  Similarity=0.381  Sum_probs=64.5

Q ss_pred             eCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCc
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGF  215 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~  215 (238)
                      ..|.+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+... ............  ...|..+..+|.|.|+|.|.|..|.
T Consensus         5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~-~~~~~~~~~~~~--~L~I~~v~~~D~g~Y~C~A~N~~G~   81 (90)
T cd04972           5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQT-RTDTLETTVDIY--NLQLSNITSETQTTVTCTAENPVGQ   81 (90)
T ss_pred             cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCC-ccEEEEecCCEE--EEEEecCCcccCEEEEEEEECCCCc
Confidence            4566777999999999999999999999999999887542 111111111111  1226677999999999999999999


Q ss_pred             eeEEEEEEEE
Q psy18191        216 ARSKNATLDV  225 (238)
Q Consensus       216 ~~s~~~~L~V  225 (238)
                      .. ..+.|.|
T Consensus        82 ~~-~~~~L~v   90 (90)
T cd04972          82 AN-VSVQVTV   90 (90)
T ss_pred             ee-EEEEEeC
Confidence            96 4888864

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.67  E-value=7.4e-16  Score=106.63  Aligned_cols=86  Identities=17%  Similarity=0.169  Sum_probs=65.2

Q ss_pred             CceEEeCCCcEEEEEEEee-eCCCEEEEEeCCEEeeccCCccEEEecC---CcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        139 ASAVVPRHEPTTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRILLPA---GSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~---~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      ..+.+.+|+++.|.|.+.| .|+|.+.|+|||.+|... ....+...+   ......+.|..+..+|+|.|+|.|.|..|
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G   89 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNK-LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA   89 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCC-cceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence            4678899999999999999 899999999999998743 121221111   11122223566699999999999999999


Q ss_pred             ceeEEEEEEEEc
Q psy18191        215 FARSKNATLDVA  226 (238)
Q Consensus       215 ~~~s~~~~L~V~  226 (238)
                      ... .++.|.|.
T Consensus        90 ~~~-~t~~L~V~  100 (101)
T cd04975          90 SKS-LTFELYVN  100 (101)
T ss_pred             cEE-EEEEEEEE
Confidence            996 59999885

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.67  E-value=1.7e-15  Score=102.76  Aligned_cols=90  Identities=32%  Similarity=0.581  Sum_probs=73.6

Q ss_pred             CEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       132 P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      |.|...+.++.+.+|+++.|.|.+.|.|.|.+.|++++..+..+ ....+....+...+.  |..+..+|+|.|+|.|.|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~L~--I~~v~~~D~G~Y~C~~~n   77 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSS-QRYQIESDGGSSSLT--IKNVTREDAGTYTCVASN   77 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESS-SSEEEEEETTEEEEE--ESSESGGGSEEEEEEEEE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeee-eeeeeecccceeEEc--cCCCChhhCEEEEEEEEE
Confidence            67888889999999999999999999999999999999999863 233333333333332  678899999999999999


Q ss_pred             CCCceeEEEEEEEE
Q psy18191        212 ELGFARSKNATLDV  225 (238)
Q Consensus       212 ~~G~~~s~~~~L~V  225 (238)
                      ..|... ..+.|.|
T Consensus        78 ~~g~~~-~~~~l~V   90 (90)
T PF07679_consen   78 SSGEAT-ASVNLTV   90 (90)
T ss_dssp             TTEEEE-EEEEEEE
T ss_pred             CCCEEE-EEEEEEC
Confidence            999997 5888876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.67  E-value=1.8e-15  Score=104.09  Aligned_cols=93  Identities=28%  Similarity=0.378  Sum_probs=68.4

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccC--CccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEI--GSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~--~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      +|.|.. +.+..+.+|+++.|.|.+.|.|.|.+.|++++..+....  ...++..........+.|..+..+|+|.|+|.
T Consensus         2 ~P~i~~-~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   80 (96)
T cd05732           2 QPKITY-LENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE   80 (96)
T ss_pred             Ccccee-cCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence            677754 567888999999999999999999999999986654321  01122222211112233777899999999999


Q ss_pred             EEeCCCceeEEEEEEEE
Q psy18191        209 ARNELGFARSKNATLDV  225 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V  225 (238)
                      |.|.+|... .++.|.|
T Consensus        81 a~N~~G~~~-~s~~l~v   96 (96)
T cd05732          81 ASNRIGGDQ-QSMYLEV   96 (96)
T ss_pred             EEeCCCCcE-EEEEEeC
Confidence            999999996 5888865

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>KOG4194|consensus

Probab=99.66  E-value=8e-16  Score=132.06  Aligned_cols=193  Identities=19%  Similarity=0.281  Sum_probs=130.3

Q ss_pred             hhhhcccceeEEeecCCCCCCCCCCCCcceeeeeccccccC-----------CCcccccCCCccEEEecccc-ccccceE
Q psy18191         13 SFVENSSQRCIKINLPKASHSPSSRPDQNYLRVSGFADLTQ-----------PPARGGFYPKPICLRFQDLL-PQSKQGL   80 (238)
Q Consensus        13 ~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~v~~~~~~~~-----------pp~~~~~~~~~~~~w~~~~~-~~~~~g~   80 (238)
                      .|++.|.|.||..|--....+..++....-.  -.|...+.           --......|.|.+.|.|++- +..+...
T Consensus       582 t~td~grYQCVvtN~FGStysqk~KltV~~~--PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~e  659 (873)
T KOG4194|consen  582 TFTDEGRYQCVVTNHFGSTYSQKAKLTVNQA--PSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARE  659 (873)
T ss_pred             ecccCceEEEEEecccCcchhheeEEEeecc--CccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhh
Confidence            4788999999999999888887666443221  00111110           01111235689999999987 4666432


Q ss_pred             ---------EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEE
Q psy18191         81 ---------MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTL  151 (238)
Q Consensus        81 ---------~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L  151 (238)
                               --++|.++.++|.|.|+|.+.+.  +|.           ......+.|...|.+..+.....+..|+++.|
T Consensus       660 RRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~--AG~-----------isanAtL~V~e~p~f~~PL~~~~V~~get~vl  726 (873)
T KOG4194|consen  660 RRLHVMPEDDVFFITNVKIEDQGIYTCTAQNV--AGQ-----------ISANATLTVLETPSFSIPLEDQLVVVGETLVL  726 (873)
T ss_pred             heeeecCCCCEEEEecccccccceeEEeeecc--ccc-----------eeeceEEEEecCCcccccccceEEEecceEEE
Confidence                     23456688888888888777663  231           11111222556788888888899999999999


Q ss_pred             EEEEeeeCC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191        152 NCKADGYPE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA  226 (238)
Q Consensus       152 ~C~~~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~  226 (238)
                      .|.+.|.|. |.+.|+|+++++...   .+....++.-.+  +++.+..+|+|.|+|...|..|.... -+.+.+.
T Consensus       727 qC~a~~~~a~pr~~W~k~d~pil~t---~rh~f~d~dQll--vv~~~~~~daG~yTcem~~~~~~~~~-~i~l~~~  796 (873)
T KOG4194|consen  727 QCLAEGAPADPRLEWFKEDKPILIT---ERHTFPDGDQLL--VVKENLVEDAGIYTCEMSNTLGTERI-HICLLVY  796 (873)
T ss_pred             EEecCCCCCCccccccCCCCceEEe---ecccCCCCCeEE--EEEehhhhhcceEEEEEEeeccceee-EEEEEEe
Confidence            999999998 999999999988753   233333333222  24556899999999999999999864 5555443

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.66  E-value=3.1e-15  Score=105.20  Aligned_cols=101  Identities=18%  Similarity=0.259  Sum_probs=70.3

Q ss_pred             ccCCEEEeCCCceE-E---eCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEE-ecCCc-EEEEEeecCCC-CCC
Q psy18191        129 YRVPRITEHPASAV-V---PRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRIL-LPAGS-LFFLSLVHGKK-DTD  201 (238)
Q Consensus       129 ~~~P~i~~~~~~~~-~---~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~~~-l~~~~vi~~v~-~~d  201 (238)
                      .++|.|...+.... +   ..|+++.|.|.+.|.|.|.++|+++|..+.......... ...+. ....+.|..+. .+|
T Consensus         2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D   81 (109)
T cd05773           2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD   81 (109)
T ss_pred             ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence            46777766654222 2   246789999999999999999999999886431111111 11111 11122356666 589


Q ss_pred             CeEEEEEEEeCCCceeEEEEEEEEccCCC
Q psy18191        202 SGVYWCVARNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       202 ~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      .|.|+|.|.|.+|.+. ..+.|.|..+|+
T Consensus        82 ~G~Y~C~A~N~~G~~~-~~i~L~~~~~p~  109 (109)
T cd05773          82 YALFTCTAHNSLGEDS-LDIQLVSTSRPD  109 (109)
T ss_pred             CEEEEEEEEeCCccCc-EEEEEEecCCCC
Confidence            9999999999999996 599999988774

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.66  E-value=1.9e-15  Score=101.68  Aligned_cols=84  Identities=32%  Similarity=0.598  Sum_probs=67.0

Q ss_pred             CCCceEEeCCCcEEEEEEE-eeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCc
Q psy18191        137 HPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGF  215 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~  215 (238)
                      .|.+..+.+|+++.|.|.+ .|.|.|.+.|++++..+... ........++.|.+..+    +.+|+|.|+|.|.|..|.
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~-~~~~~~~~~~~L~I~~~----~~~D~G~Y~C~a~N~~G~   76 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD-NERVRIVDDGNLLIAEA----RKSDEGTYKCVATNMVGE   76 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC-CCCEEEccCCEEEEeEC----CcccCEEEEEEEEeccCc
Confidence            3567888999999999998 79999999999999988753 22333344567765554    999999999999999999


Q ss_pred             eeEEEEEEEE
Q psy18191        216 ARSKNATLDV  225 (238)
Q Consensus       216 ~~s~~~~L~V  225 (238)
                      ..+..+.|.|
T Consensus        77 ~~s~~~~l~V   86 (86)
T cd05724          77 RESAAARLSV   86 (86)
T ss_pred             eeeeeEEEEC
Confidence            8766777654

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.66  E-value=2.6e-15  Score=103.71  Aligned_cols=90  Identities=32%  Similarity=0.497  Sum_probs=66.5

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEEeecc--CCccEEEec----CCcEEEEEeecCCCCCC
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSLVSAE--IGSHRILLP----AGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~l~~~--~~~~~~~~~----~~~l~~~~vi~~v~~~d  201 (238)
                      ++|.|.. +.+..+.+|+++.|.|.+.|.|.|.+.|+++  +..+...  ....++...    ...|.    |..++.+|
T Consensus         1 ~~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~----I~~v~~~D   75 (98)
T cd05870           1 VQPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLH----IKDVKLSD   75 (98)
T ss_pred             CCCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEE----EeeCCcCC
Confidence            3678765 5689999999999999999999999999994  4444311  011233222    12343    56669999


Q ss_pred             CeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        202 SGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       202 ~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      +|.|+|.|.|.+|... .++.|.|
T Consensus        76 ~G~Y~C~A~N~~G~~~-~~~~l~~   98 (98)
T cd05870          76 SGRYDCEAASRIGGHQ-KSMYLDI   98 (98)
T ss_pred             CEEEEEEEeccCCcce-eEEEEeC
Confidence            9999999999999986 5888865

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.65  E-value=1.4e-15  Score=99.97  Aligned_cols=75  Identities=31%  Similarity=0.550  Sum_probs=60.5

Q ss_pred             CCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        146 HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      |+++.|.|.+.|.|.|.+.|+++|..+............++.|.    |..++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~----i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLI----LSNVQPNDTAVYQCNASNVHGYLL-ANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEE----ECCCChhhCEEEEEEEEccCCeEE-EeEEEEE
Confidence            78899999999999999999999998865422223334456655    556699999999999999999997 4888887

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.65  E-value=1.3e-15  Score=99.66  Aligned_cols=74  Identities=35%  Similarity=0.566  Sum_probs=58.6

Q ss_pred             EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191        149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA  226 (238)
Q Consensus       149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~  226 (238)
                      +.|.|.+.|.|.|.+.|++++..+............++.|.    |..++.+|+|.|+|.|.|..|...+..+.|.|.
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~----i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~   74 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQ----IENSEESDQGKYECVATNSAGTRYSAPANLYVR   74 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEE----ECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence            47999999999999999999988764323333444455554    566699999999999999999976678888873

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.65  E-value=4e-15  Score=102.07  Aligned_cols=89  Identities=17%  Similarity=0.341  Sum_probs=63.3

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCC-CEEEEEe-CCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPE-PRIEWYK-DGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~-p~i~W~~-~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      ...|....+..|+++.|.|.+.|.|. |.++|++ ++..+... ..+......+.....+.|..++.+|+|.|+|.|.|.
T Consensus         4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~-~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   82 (96)
T cd05865           4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPN-QQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNE   82 (96)
T ss_pred             EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCcccc-CCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcC
Confidence            34566778999999999999999995 7999998 78766542 112222222111111225666999999999999999


Q ss_pred             C-CceeEEEEEEEE
Q psy18191        213 L-GFARSKNATLDV  225 (238)
Q Consensus       213 ~-G~~~s~~~~L~V  225 (238)
                      + |... .++.|.|
T Consensus        83 ~~g~~~-~s~~l~v   95 (96)
T cd05865          83 DEGESE-ATVNVKI   95 (96)
T ss_pred             CCCcEE-EEEEEEE
Confidence            7 7775 5888876

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.65  E-value=2.4e-15  Score=98.55  Aligned_cols=75  Identities=28%  Similarity=0.455  Sum_probs=55.5

Q ss_pred             EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      +.|.|.+.|.|.|.+.|+|++..+... ..+......+.-...+.|..+..+|+|.|+|.|.|.+|+..+ .+.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~-~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~-~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYN-TDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSC-NARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCC-CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEE-EEEEeC
Confidence            479999999999999999999988743 222222222211111237777999999999999999999975 888865

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.64  E-value=1.8e-15  Score=98.67  Aligned_cols=73  Identities=33%  Similarity=0.572  Sum_probs=59.8

Q ss_pred             CCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        146 HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      |+++.|.|.+.|.|.|.++|++++..+..  ........++.|.    |..+..+|+|.|+|.|.|.+|...+ ++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~--~~~~~~~~~~~L~----i~~v~~~D~G~Y~C~a~N~~G~~~~-~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTN--SSRICIWPDGSLE----ILNVTKSDEGKYTCFAENFFGKANS-TGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEccc--CCCEEECCCCeEE----EccCChhHCEEEEEEEECCCCceEE-EEEEEC
Confidence            68899999999999999999999998764  2333344556666    5555999999999999999999974 888875

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>KOG4221|consensus

Probab=99.64  E-value=7.3e-15  Score=134.13  Aligned_cols=159  Identities=21%  Similarity=0.309  Sum_probs=111.1

Q ss_pred             CCCccEEEeccccccccce-E-----EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecce-ecCCccCCE
Q psy18191         61 YPKPICLRFQDLLPQSKQG-L-----MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGV-HGDGYRVPR  133 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g-~-----~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~-~~~v~~~P~  133 (238)
                      .+.|++.|.++..++...+ +     --|.|.++.+.|.|.|.|...+.-.++.       .+...+.+. ...+...-.
T Consensus       167 e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~-------S~~a~ltv~s~~~~~~~~~  239 (1381)
T KOG4221|consen  167 EPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRT-------SNEAELTVLSDPGALNKLV  239 (1381)
T ss_pred             ccCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCc-------cceeEEEecCCccccccee
Confidence            4467899999888655433 1     1356678899999999987766433221       111111110 111222334


Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEE-ecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRIL-LPAGSLFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      |...|.+..+.+|+++.|.|.+.|.|.|.|.|++||..|..+  +.++. ...+.|.+..+    +..|+|.|+|+|.|.
T Consensus       240 fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~d--s~rivl~g~~slliS~a----~~~dSg~YtC~Atn~  313 (1381)
T KOG4221|consen  240 FLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVD--SYRIVLVGGSSLLISNA----TDDDSGKYTCRATNT  313 (1381)
T ss_pred             eecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeec--ceEEEEecccceEEecc----ccccCceEEEEecCC
Confidence            667788899999999999999999999999999999999875  24444 44666765554    999999999999996


Q ss_pred             CCceeEEEEEEEEccCCCCCC
Q psy18191        213 LGFARSKNATLDVAGKISTAT  233 (238)
Q Consensus       213 ~G~~~s~~~~L~V~~~~~~~~  233 (238)
                      ..... ..+.|.|..+|..+.
T Consensus       314 ~D~id-asaev~V~a~P~~~~  333 (1381)
T KOG4221|consen  314 NDSID-ASAEVTVLAPPGFTK  333 (1381)
T ss_pred             Ccccc-cceEEEEEcCCCCCC
Confidence            66654 377888888776554

>KOG4194|consensus

Probab=99.64  E-value=1.2e-15  Score=130.92  Aligned_cols=131  Identities=25%  Similarity=0.359  Sum_probs=95.0

Q ss_pred             EEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceec-ceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC
Q psy18191         83 LVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFP-GVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP  161 (238)
Q Consensus        83 l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~-~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p  161 (238)
                      +...++.-.|.|+|.|...|.             .+...+ .+...+...|.|+..|.++++..|+.+.|.|.|.|.|.|
T Consensus       576 L~L~nVt~td~grYQCVvtN~-------------FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~P  642 (873)
T KOG4194|consen  576 LHLDNVTFTDEGRYQCVVTNH-------------FGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRP  642 (873)
T ss_pred             eeeeeeecccCceEEEEEecc-------------cCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCc
Confidence            334455555666666554443             222222 344447788999999999999999999999999999999


Q ss_pred             EEEEEeCCEE-eeccCCccEEEec-CCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCCCC
Q psy18191        162 RIEWYKDGSL-VSAEIGSHRILLP-AGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST  231 (238)
Q Consensus       162 ~i~W~~~g~~-l~~~~~~~~~~~~-~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~  231 (238)
                      +|.|.|+|.. .+.-...+.+.+. ++.+.+    .+|+.+|.|.|+|.|.|.+|+.. ..++|.|.+.|+.
T Consensus       643 eIawqkdggtdFPAA~eRRl~Vmpedd~f~I----tnvk~eD~GiYtC~A~n~AG~is-anAtL~V~e~p~f  709 (873)
T KOG4194|consen  643 EIAWQKDGGTDFPAARERRLHVMPEDDVFFI----TNVKIEDQGIYTCTAQNVAGQIS-ANATLTVLETPSF  709 (873)
T ss_pred             ceeehhcCCCCCchhhhheeeecCCCCEEEE----ecccccccceeEEeeecccccee-eceEEEEecCCcc
Confidence            9999998754 3332223333344 444554    45599999999999999999996 6999999887653

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.63  E-value=3.1e-15  Score=100.46  Aligned_cols=78  Identities=26%  Similarity=0.368  Sum_probs=60.0

Q ss_pred             CcEEEEEEEeeeCCC--EEEEEeCCEEeeccCCccEE---Ee--cCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEE
Q psy18191        147 EPTTLNCKADGYPEP--RIEWYKDGSLVSAEIGSHRI---LL--PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSK  219 (238)
Q Consensus       147 ~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~~~~---~~--~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~  219 (238)
                      +.+.|.|.+.|.|.|  .+.|+++|..+.......++   ..  ..+.|.    |..++..|+|.|+|.|.|.+|... .
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~----I~~v~~~D~G~YtC~A~n~~g~~~-~   75 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLV----IVNAQLSHAGTYTCTAQTVVDSAS-A   75 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEE----EccCChhhCeEEEEEEecCCCCEE-E
Confidence            468999999999988  58999999988653222221   11  224454    566699999999999999999997 5


Q ss_pred             EEEEEEccCC
Q psy18191        220 NATLDVAGKI  229 (238)
Q Consensus       220 ~~~L~V~~~~  229 (238)
                      ++.|.|.++|
T Consensus        76 ~~~L~V~~~P   85 (85)
T cd05854          76 SATLVVRGPP   85 (85)
T ss_pred             EEEEEEECCC
Confidence            9999998865

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.63  E-value=2.3e-15  Score=99.86  Aligned_cols=78  Identities=28%  Similarity=0.471  Sum_probs=60.4

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCC-EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~  213 (238)
                      ...|.++.+.+|+++.|.|.+.|.|.| .|.|+++|.++...     .....+.|.+.      ...|+|.|+|.|.|.+
T Consensus         2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~-----~~~~~s~L~i~------~~~d~g~Y~C~A~N~~   70 (81)
T cd05749           2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP-----PAPSPSVLNVP------GLNETSKFSCEAHNAK   70 (81)
T ss_pred             cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC-----CCCCCCEEEEc------cccCCeEEEEEEEecc
Confidence            345778899999999999999999999 79999999987531     11223444433      3358899999999999


Q ss_pred             CceeEEEEEE
Q psy18191        214 GFARSKNATL  223 (238)
Q Consensus       214 G~~~s~~~~L  223 (238)
                      |...+..++|
T Consensus        71 G~~~s~~a~~   80 (81)
T cd05749          71 GVTTSRTGTV   80 (81)
T ss_pred             CcEEeeeEEe
Confidence            9987666665

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.63  E-value=4.9e-15  Score=99.51  Aligned_cols=80  Identities=30%  Similarity=0.498  Sum_probs=61.5

Q ss_pred             eEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEe--cCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeE
Q psy18191        141 AVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL--PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARS  218 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~--~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s  218 (238)
                      ..+.+|+.+.|.|.+.|.|.|.+.|+++|..+...........  ....|.    |..+..+|+|.|+|.|.|.+|+.. 
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~----i~~~~~~D~G~Y~C~a~N~~G~~~-   78 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI----MESVVPSDKGNYTCVVENEYGSIN-   78 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEE----EccCCcccCEEEEEEEEeCCCEEE-
Confidence            4578899999999999999999999999998865311111111  122333    566699999999999999999997 


Q ss_pred             EEEEEEE
Q psy18191        219 KNATLDV  225 (238)
Q Consensus       219 ~~~~L~V  225 (238)
                      .++.|.|
T Consensus        79 ~~~~l~v   85 (85)
T cd05857          79 HTYHLDV   85 (85)
T ss_pred             EEEEEEC
Confidence            5888875

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.63  E-value=5.6e-15  Score=102.32  Aligned_cols=80  Identities=25%  Similarity=0.402  Sum_probs=63.8

Q ss_pred             ceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEec---------CCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        140 SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLP---------AGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~---------~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      ...+..|+.+.|.|.+.|.|+|.+.|+|+|.+|..+  .......         ...|.    |..+..+|+|.|+|.|.
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~--~~~~~~~~~~~~~~~~~s~L~----I~~v~~~D~G~Ytc~A~   85 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIEN--LTEITTSEHNVQETRYVSKLK----LIRAKEEDSGLYTALAQ   85 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCC--cceEEeccccccceeeccEEE----EeeCCHHHCEEEEEEEE
Confidence            567788999999999999999999999999998753  2121111         12344    55669999999999999


Q ss_pred             eCCCceeEEEEEEEEc
Q psy18191        211 NELGFARSKNATLDVA  226 (238)
Q Consensus       211 N~~G~~~s~~~~L~V~  226 (238)
                      |..|... .++.|.|+
T Consensus        86 N~~g~~~-~t~~l~V~  100 (101)
T cd05859          86 NEDAVKS-YTFALQIQ  100 (101)
T ss_pred             cCCceEE-EEEEEEEE
Confidence            9999996 59999885

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.62  E-value=1.4e-14  Score=98.74  Aligned_cols=86  Identities=22%  Similarity=0.402  Sum_probs=66.0

Q ss_pred             CCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        137 HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      .|..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+... .........+.. ..+.|..++.+|+|.|+|.|.|.+|..
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~-~~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~N~~G~~   84 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELS-EHYSVKLEQGKY-ASLTIKGVTSEDSGKYSINVKNKYGGE   84 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCC-CCEEEEEcCCCE-EEEEECCCChhhCEEEEEEEEeCCCce
Confidence            356788999999999999999999999999999887643 222232333322 123377889999999999999999999


Q ss_pred             eEEEEEEEE
Q psy18191        217 RSKNATLDV  225 (238)
Q Consensus       217 ~s~~~~L~V  225 (238)
                      . ..+.|.|
T Consensus        85 ~-~~~~v~~   92 (92)
T cd05891          85 T-VDVTVSV   92 (92)
T ss_pred             e-eEEEEEC
Confidence            6 4777764

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.61  E-value=4.1e-15  Score=96.42  Aligned_cols=71  Identities=30%  Similarity=0.522  Sum_probs=55.8

Q ss_pred             EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191        149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA  226 (238)
Q Consensus       149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~  226 (238)
                      +.|.|.+.|.|.|.+.|++++..+...  .......++.|.+    ..++.+|+|.|+|.|.|..|... .++.|.|.
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~--~~~~~~~~~~L~I----~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~Ve   71 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPN--RTKKLNNNKTLQL----DNVLESDDGEYVCTAENSEGSAR-HHYTVTVE   71 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCC--ceeEEcCCCEEEE----cccCHHhCEEEEEEEEcCCCeEE-EEEEEEEC
Confidence            468999999999999999999876532  2223334566664    45599999999999999999996 58888873

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.61  E-value=3.9e-15  Score=94.92  Aligned_cols=65  Identities=31%  Similarity=0.552  Sum_probs=52.1

Q ss_pred             EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      +.|.|.+.|.|.|.++|+|||..+...       ...+.|.    |..+..+|+|.|+|.|.|..|... +++.|.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~-------~~~~~L~----i~~v~~~D~G~YtC~a~N~~g~~~-~~~~~~l   65 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK-------HSQHSLQ----IKDVTEASAGTYTLVLWNSAAGLE-KRISLEL   65 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc-------CCcCEEE----ECCCCHHHCEEEEEEEEECCccEE-EEEEEEE
Confidence            479999999999999999999988632       1234454    566699999999999999999875 4666665

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.61  E-value=6.5e-15  Score=97.04  Aligned_cols=74  Identities=34%  Similarity=0.663  Sum_probs=54.3

Q ss_pred             EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeE-EEEEEEEc
Q psy18191        149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARS-KNATLDVA  226 (238)
Q Consensus       149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s-~~~~L~V~  226 (238)
                      +.|.|.+.|.|.|.+.|+|+|.++.............+.|.    |..+..+|+|.|+|.|.|.+|...+ ..++|.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~----I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLT----LRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEE----EeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            47999999999999999999998865321122222334555    4555999999999999999998742 35666653

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.61  E-value=1.4e-14  Score=94.64  Aligned_cols=74  Identities=22%  Similarity=0.353  Sum_probs=55.4

Q ss_pred             cEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        148 PTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       148 ~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      .+.|.|.+.|.|.|.+.|+++|..+...  ........+... .+.|..+..+|+|.|+|.|.|.+|... .++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~--~~~~~~~~~~~~-~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLS--GRVQIETTASST-SLVIKNAERSDSGKYTLTLKNPAGEKS-ATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCC--CeEEEEECCCeE-EEEECCCCcCcCEEEEEEEECCCccEE-EEEEEEC
Confidence            3789999999999999999999988532  222222222111 123678899999999999999999996 5888865

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.61  E-value=7.2e-15  Score=98.06  Aligned_cols=78  Identities=21%  Similarity=0.326  Sum_probs=61.3

Q ss_pred             CcEEEEEEEee--eCCCEEEEEeCCEEeeccCCccEEEe-----cCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEE
Q psy18191        147 EPTTLNCKADG--YPEPRIEWYKDGSLVSAEIGSHRILL-----PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSK  219 (238)
Q Consensus       147 ~~~~L~C~~~g--~P~p~i~W~~~g~~l~~~~~~~~~~~-----~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~  219 (238)
                      +++.|.|.+.+  .+.+.+.|++||..|.......++..     ..+.|.|.    +++.+|+|.|+|.|.|.+++.. .
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~----nv~~~dsG~YtC~a~n~~~~~~-a   75 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIR----SIQLKHAGKYVCMVQTSVDKLS-A   75 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEe----cCCHHHCEEEEEEEEcccCceE-E
Confidence            46899999976  55789999999999974323333332     34667654    5599999999999999999996 6


Q ss_pred             EEEEEEccCC
Q psy18191        220 NATLDVAGKI  229 (238)
Q Consensus       220 ~~~L~V~~~~  229 (238)
                      ++.|.|.++|
T Consensus        76 ~a~L~V~~pP   85 (85)
T cd05853          76 AADLIVRGPP   85 (85)
T ss_pred             EEEEEEecCC
Confidence            9999999876

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.61  E-value=2.1e-14  Score=97.64  Aligned_cols=83  Identities=23%  Similarity=0.479  Sum_probs=63.8

Q ss_pred             eCCCceEEeCCCcEEEEEEEeeeCCCEEEEEe-CCEEeeccCCccEEEecCC---cEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGYPEPRIEWYK-DGSLVSAEIGSHRILLPAG---SLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~-~g~~l~~~~~~~~~~~~~~---~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      ..+.+..+.+|+++.|.|.+.|.|. .+.|++ ++..+..  ..+.....++   .|.    |..+..+|+|.|+|.|.|
T Consensus         5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~--~~r~~~~~~g~~~~L~----I~~v~~~D~G~Y~C~A~N   77 (92)
T cd05866           5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVS--SQRVVVQKEGVRSRLT----IYNANIEDAGIYRCQATD   77 (92)
T ss_pred             EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecC--CCCEEEEeCCCeeEEE----EecCChHHCEEEEEEEEc
Confidence            4467788999999999999999998 899998 4666643  2333333344   344    566699999999999999


Q ss_pred             CCCceeEEEEEEEE
Q psy18191        212 ELGFARSKNATLDV  225 (238)
Q Consensus       212 ~~G~~~s~~~~L~V  225 (238)
                      ..|....+++.|.|
T Consensus        78 ~~G~~~~~~i~l~~   91 (92)
T cd05866          78 AKGQTQEATVVLEI   91 (92)
T ss_pred             CCCcEEEEEEEEEE
Confidence            99998656877765

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.59  E-value=1.4e-14  Score=93.20  Aligned_cols=68  Identities=28%  Similarity=0.474  Sum_probs=51.5

Q ss_pred             CCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEE
Q psy18191        146 HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL  223 (238)
Q Consensus       146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L  223 (238)
                      |+.+.|.|.+.|.|.|.|+|+|++..+...   .+.......|.+    ..  ..|+|.|+|.|.|..|... .++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~---~~~~~~~~~L~i----~~--~~d~G~Y~C~A~N~~G~~~-~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKE---DEMPVGRNVLEL----TN--IYESANYTCVAISSLGMIE-ATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCc---cceecCccEEEE----ec--cccCeeEEEEEEeCCCEEE-EEEEE
Confidence            678999999999999999999999887532   222222333433    33  3589999999999999986 47766

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.59  E-value=9.8e-15  Score=94.60  Aligned_cols=69  Identities=32%  Similarity=0.555  Sum_probs=55.1

Q ss_pred             EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      +.|.|.+.|.|.|.+.|+|+|..+...   .+....++.|.    |..+..+|+|.|+|.|.|..|... ..+.+.|
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~---~~~~~~~~~L~----I~~v~~~D~G~YtC~a~N~~g~~~-~~~~~~~   69 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEK---NRTKKSGHSLT----IKDVTEEDAGNYTVVLTNKQAKLE-KRLTFTL   69 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCC---CEEEcCCCEEE----ECcCCHHHCEEEEEEEEcCCccEE-EEEEEEE
Confidence            468999999999999999999988743   33444555555    555699999999999999999875 4776665

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.59  E-value=1.1e-14  Score=97.81  Aligned_cols=78  Identities=24%  Similarity=0.387  Sum_probs=60.2

Q ss_pred             CcEEEEEEEeeeCCC--EEEEEeCCEEeeccCCcc---EE--EecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEE
Q psy18191        147 EPTTLNCKADGYPEP--RIEWYKDGSLVSAEIGSH---RI--LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSK  219 (238)
Q Consensus       147 ~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~~---~~--~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~  219 (238)
                      +++.|.|.+.|.|.|  .+.|+++|..+.......   +.  ....+.|.    |..++..|+|.|+|.|.|.+|... .
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~----I~~v~~~D~G~Y~C~a~n~~g~~~-~   75 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLM----IRNAQLKHAGKYTCTAQTVVDSLS-A   75 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEE----EccCCHHhCeeeEEEEecCCCcEE-E
Confidence            468999999999988  679999999886532211   11  12345565    555599999999999999999996 5


Q ss_pred             EEEEEEccCC
Q psy18191        220 NATLDVAGKI  229 (238)
Q Consensus       220 ~~~L~V~~~~  229 (238)
                      .+.|.|.++|
T Consensus        76 ~~~l~V~~pP   85 (85)
T cd04970          76 SADLIVRGPP   85 (85)
T ss_pred             EEEEEEECCC
Confidence            9999998865

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.59  E-value=6.1e-15  Score=95.05  Aligned_cols=68  Identities=38%  Similarity=0.686  Sum_probs=54.0

Q ss_pred             EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEE
Q psy18191        149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL  223 (238)
Q Consensus       149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L  223 (238)
                      +.|.|.+.|.|.|.+.|+|+|..+...  .......++.|.    |..+..+|+|.|+|.|.|.+|... .++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~--~~~~~~~~~~L~----I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTES--GKFHISPEGYLA----IRDVGVADQGRYECVARNTIGYAS-VSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCC--CCEEECCCCEEE----ECcCChhhCEEEEEEEECCCCcEE-EEEEe
Confidence            479999999999999999999887642  233333456665    556699999999999999999996 47766

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.59  E-value=2.3e-14  Score=97.57  Aligned_cols=83  Identities=31%  Similarity=0.630  Sum_probs=62.3

Q ss_pred             CEEEeCCCceEEeCC---CcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCC-CCCCeEEEE
Q psy18191        132 PRITEHPASAVVPRH---EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKK-DTDSGVYWC  207 (238)
Q Consensus       132 P~i~~~~~~~~~~~G---~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~-~~d~G~Y~C  207 (238)
                      |.|...|.+..+..+   +.+.|.|.+.|+|.|.++|++++..+... ...+....++.|.+..    +. .+|+|.|+|
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~-~~~~~~~~~~~L~i~~----~~~~~d~G~Y~C   76 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDE-PDSRYSLVGGNLVISN----PSKAKDAGRYQC   76 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCC-CCCCEEEECCEEEEec----CCccCCCEEEEE
Confidence            667777777665443   57999999999999999999999988532 2233444566665433    35 589999999


Q ss_pred             EEEeCCCceeEE
Q psy18191        208 VARNELGFARSK  219 (238)
Q Consensus       208 ~a~N~~G~~~s~  219 (238)
                      .|+|.+|...|.
T Consensus        77 ~a~N~~G~~~S~   88 (91)
T cd04967          77 LASNIVGTVLSR   88 (91)
T ss_pred             EEEcCCCEEEec
Confidence            999999998653

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.58  E-value=2.1e-14  Score=93.87  Aligned_cols=73  Identities=37%  Similarity=0.652  Sum_probs=57.8

Q ss_pred             CCcEEEEEEEeeeCCCEEEEEe-CCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEE
Q psy18191        146 HEPTTLNCKADGYPEPRIEWYK-DGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLD  224 (238)
Q Consensus       146 G~~~~L~C~~~g~P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~  224 (238)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+..  ........++.|.+..+    ..+|+|.|+|.|.|..|... ..+.|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~--~~~~~~~~~~~L~i~~~----~~~D~G~Y~C~a~N~~G~~~-~~~~l~   73 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISN--SSRTLVYDNGTLDILIT----TVKDTGSFTCIASNAAGEAT-ATVELH   73 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecC--CCeEEEecCCEEEEEEC----ChhhCEEEEEEEECCCCeEE-EEEEEE
Confidence            6889999999999999999997 5665543  23333445677775554    99999999999999999986 588886


Q ss_pred             E
Q psy18191        225 V  225 (238)
Q Consensus       225 V  225 (238)
                      |
T Consensus        74 v   74 (74)
T cd05764          74 I   74 (74)
T ss_pred             C
Confidence            5

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.58  E-value=5.2e-14  Score=95.97  Aligned_cols=88  Identities=18%  Similarity=0.368  Sum_probs=62.5

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEe-CCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK-DGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~  213 (238)
                      ...|.+..+..|+++.|.|.+.|.| +.+.|++ ++..+...  ........+.....+.|..++.+|+|.|+|.|.|.+
T Consensus         4 ~v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   80 (92)
T cd04977           4 DIVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQ--QQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAK   80 (92)
T ss_pred             EEecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccC--CCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCC
Confidence            3456778899999999999999997 5999997 66655532  222222233222223367779999999999999998


Q ss_pred             CceeEEEEEEEE
Q psy18191        214 GFARSKNATLDV  225 (238)
Q Consensus       214 G~~~s~~~~L~V  225 (238)
                      |.....++.|.|
T Consensus        81 g~~~~~sv~l~~   92 (92)
T cd04977          81 GTESEATVNLKI   92 (92)
T ss_pred             CCcceeEEEEEC
Confidence            765445777754

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.58  E-value=9.1e-15  Score=94.24  Aligned_cols=69  Identities=28%  Similarity=0.496  Sum_probs=54.7

Q ss_pred             EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      +.|.|.+.|.|.|.+.|++++..+..   .......++.|.    |..+..+|+|.|+|.|.|..|... ..+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~---~~~~~~~~~~L~----I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPK---GRAEILDDKSLK----IRNVTAGDEGSYTCEAENMVGKIE-ASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCC---CcEEEeeCCEEE----ECcCChhHCEEEEEEEEcCCCcEE-EEEEEEC
Confidence            47999999999999999999876642   233334556665    555599999999999999999996 4888865

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.58  E-value=2.4e-14  Score=97.25  Aligned_cols=81  Identities=30%  Similarity=0.454  Sum_probs=61.7

Q ss_pred             CCcEEEEEEEeeeCCCEEEEEeCCEEeec------cCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEE
Q psy18191        146 HEPTTLNCKADGYPEPRIEWYKDGSLVSA------EIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSK  219 (238)
Q Consensus       146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~------~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~  219 (238)
                      |+.+.|.|.+.|.|.|.+.|+++|..+..      ....+.....++.|.|.    .++.+|+|.|+|.|.|.+|... .
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~----~v~~~D~G~Y~C~a~N~~G~~~-~   75 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTIT----NVQRSDVGYYICQTLNVAGSIL-T   75 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEe----eCChhhCEEEEEEEEcCCCceE-E
Confidence            68899999999999999999998865321      01122223345666644    4499999999999999999997 5


Q ss_pred             EEEEEEccCCCC
Q psy18191        220 NATLDVAGKIST  231 (238)
Q Consensus       220 ~~~L~V~~~~~~  231 (238)
                      .+.|.|.+...-
T Consensus        76 ~~~l~V~~~~~~   87 (90)
T cd05726          76 KAYLEVTDVIAD   87 (90)
T ss_pred             EEEEEEeecccC
Confidence            999999876543

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.57  E-value=9.9e-14  Score=95.75  Aligned_cols=91  Identities=20%  Similarity=0.297  Sum_probs=65.6

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCC-EEEEEeCCEEeeccCCccEEEecC---CcEEEEEeecCCCCCC-CeEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPA---GSLFFLSLVHGKKDTD-SGVY  205 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~---~~l~~~~vi~~v~~~d-~G~Y  205 (238)
                      ||.|.. +....+.+|+.+.|.|.+.|.|.| .+.|++++..+......+......   +.....+.|..+..+| .|.|
T Consensus         2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            677754 556778999999999999999999 699999998886532222222111   1222223467778855 8999


Q ss_pred             EEEEEeCCCceeEEEEEE
Q psy18191        206 WCVARNELGFARSKNATL  223 (238)
Q Consensus       206 ~C~a~N~~G~~~s~~~~L  223 (238)
                      .|.|.|.+|.+. ..+.|
T Consensus        81 ~C~A~N~~G~~~-~~~~L   97 (98)
T cd05758          81 NCTAWNSFGSGT-AIISL   97 (98)
T ss_pred             EEEEEcCCCccc-EEEEe
Confidence            999999999986 47665

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.57  E-value=2e-14  Score=95.19  Aligned_cols=79  Identities=22%  Similarity=0.359  Sum_probs=61.9

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      |.+..+.+|+.+.|.|.+.|. .|.+.|+|+|.++...   .+....++.|.    |..+..+|+|.|+|.|.|..|...
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~---~~~~~~~~~L~----I~~~~~~DsG~Y~C~a~n~~g~~~   72 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGEN---NRTRITGEEVQ----IKDAVPRDSGLYACVTSSPSGSDT   72 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCC---ceEEEeCCEEE----ECCCChhhCEEEEEEEeCCCCccc
Confidence            456788999999999999986 5789999999888642   23334455554    566699999999999999999985


Q ss_pred             EEEEEEEE
Q psy18191        218 SKNATLDV  225 (238)
Q Consensus       218 s~~~~L~V  225 (238)
                       ..+.|.|
T Consensus        73 -~~~~v~V   79 (79)
T cd04973          73 -TYFSVNV   79 (79)
T ss_pred             -EEEEEeC
Confidence             4666654

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.57  E-value=1.7e-14  Score=92.95  Aligned_cols=68  Identities=26%  Similarity=0.514  Sum_probs=51.9

Q ss_pred             EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      +.|.|.+.|.|.|.++|+|+|.++...   ..+ ..+..|.    |..+..+|+|.|+|.|.|.+|... ...++.+
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~---~~~-~~~~~L~----I~~v~~~D~G~YtC~a~N~~G~~~-~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLN---HTF-KRGVHLT----IYEVTEKDAGNYTVVLTNPITKEE-QRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCC---CEE-ccCCEEE----ECcCCHHHCEEEEEEEEECCCcee-eEEEEEE
Confidence            368999999999999999999998642   222 2233454    566699999999999999999775 3555443

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.56  E-value=2.5e-14  Score=93.77  Aligned_cols=72  Identities=38%  Similarity=0.601  Sum_probs=53.5

Q ss_pred             EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEE--ecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRIL--LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~--~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      +.|.|.+.|.|.|.++|+|++..........++.  ..++.|.    |..+..+|+|.|+|.|.|..|... ..+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~----I~~~~~~D~G~Y~C~A~N~~G~~~-~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFF----IVDVKIEDTGVYSCTAQNTAGSIS-ANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEE----EeeCCcccCEEEEEEEEcCCCEEE-eeEEEEE
Confidence            4799999999999999999986432211222222  2334454    455599999999999999999996 5999987

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.56  E-value=2.8e-14  Score=96.90  Aligned_cols=79  Identities=24%  Similarity=0.331  Sum_probs=54.7

Q ss_pred             CCcEEEEEEEeeeCCCEEEEEeCC----EEeeccCCccEEEec-------CCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        146 HEPTTLNCKADGYPEPRIEWYKDG----SLVSAEIGSHRILLP-------AGSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       146 G~~~~L~C~~~g~P~p~i~W~~~g----~~l~~~~~~~~~~~~-------~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      |+.+.|.|.+.|.|.|.|+|+|++    ..+............       .+.+.++ .|..++.+|+|.|+|.|.|..|
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVL-YLRNVSFDDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceE-EEeccccccCcEEEEEeecccC
Confidence            678999999999999999999963    333221111111000       1112122 2566799999999999999999


Q ss_pred             ceeEEEEEEEEc
Q psy18191        215 FARSKNATLDVA  226 (238)
Q Consensus       215 ~~~s~~~~L~V~  226 (238)
                      ... .++.|.|.
T Consensus        80 ~~~-~sa~L~V~   90 (90)
T cd04974          80 PSH-HSAWLTVL   90 (90)
T ss_pred             ccc-CCEEEEeC
Confidence            996 59999884

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.56  E-value=1.4e-13  Score=114.99  Aligned_cols=149  Identities=11%  Similarity=0.126  Sum_probs=92.8

Q ss_pred             CCCccEEEeccccccccce-----EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEE
Q psy18191         61 YPKPICLRFQDLLPQSKQG-----LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRIT  135 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g-----~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~  135 (238)
                      .+.+.+.|+++.. .....     ...|.+.++..+|.|.|+|.+.+....-.|.-    .....+. + .....||.+ 
T Consensus       153 ~~~~~i~W~k~~~-~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~----t~~v~l~-V-~~~~~pp~~-  224 (326)
T PHA02785        153 NVNADIIWSGHRR-LRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNV----TRIVKLE-V-RDRIIPPTM-  224 (326)
T ss_pred             CCCceEEEccCCc-cCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeE----EEEEEEE-E-eccCCCcee-
Confidence            4578899998653 11111     13577889999999999987766422111100    0000011 1 112245655 


Q ss_pred             eCCCceEEeCCCcEEEEEEEeeeCCC---EEEEEeCCEEeeccC--CccEEEecC------Cc--EEEEEeecCCCCCCC
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGYPEP---RIEWYKDGSLVSAEI--GSHRILLPA------GS--LFFLSLVHGKKDTDS  202 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~P~p---~i~W~~~g~~l~~~~--~~~~~~~~~------~~--l~~~~vi~~v~~~d~  202 (238)
                      ..|....+..|+.+.|.|.+.|.|.|   .+.|++||..+....  ...++...+      +.  ....+.|..++.+|+
T Consensus       225 ~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~  304 (326)
T PHA02785        225 QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDA  304 (326)
T ss_pred             cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcC
Confidence            44577888889999999999998874   899999999885421  111222111      11  122234778899999


Q ss_pred             eEEEEEEEeCCCcee
Q psy18191        203 GVYWCVARNELGFAR  217 (238)
Q Consensus       203 G~Y~C~a~N~~G~~~  217 (238)
                      |.|+|.|.|..|...
T Consensus       305 G~Y~C~A~n~~~~~~  319 (326)
T PHA02785        305 TTFTCMAFTIPSISK  319 (326)
T ss_pred             eeeEEEEEeccCceE
Confidence            999999999997664

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.55  E-value=2.9e-14  Score=93.92  Aligned_cols=74  Identities=30%  Similarity=0.577  Sum_probs=52.6

Q ss_pred             EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEE-EecCCcEEEEEeecC-CCCCCCeEEEEEEEeCCCceeEEEEEE
Q psy18191        149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFFLSLVHG-KKDTDSGVYWCVARNELGFARSKNATL  223 (238)
Q Consensus       149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~-~~~~~~l~~~~vi~~-v~~~d~G~Y~C~a~N~~G~~~s~~~~L  223 (238)
                      +.|.|.+.|.|.|.++|+|+|..+......... ...++.|.+..+ .. ...+|+|.|+|.|.|.+|...++.+.|
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~-~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l   76 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNM-NGGRAEDYEGEYQCYASNELGTAISNEIHL   76 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEecc-CCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence            479999999999999999999988643222222 234577765433 10 023689999999999999987655554

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.55  E-value=7e-14  Score=92.32  Aligned_cols=75  Identities=25%  Similarity=0.337  Sum_probs=55.0

Q ss_pred             CCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEE
Q psy18191        146 HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLD  224 (238)
Q Consensus       146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~  224 (238)
                      |+++.|.|.+.|.|.|.+.|++++..+... ....+....+...  +.|..+..+|+|.|+|.|.|..|...+ .+.+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~-~~~~~~~~~~~~~--L~I~~v~~~D~G~Y~C~a~N~~G~~~~-~~~~~   75 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDS-ARVSITSEGGYGT--LTIRDVKESDQGAYTCEAINTRGMVFG-IPDGI   75 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCC-CCEEEEECCCEEE--EEECCCChHHCEEEEEEEEecCCEEEe-cccEE
Confidence            688999999999999999999998877542 1112222222222  236777999999999999999999864 54443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.55  E-value=5.9e-14  Score=92.37  Aligned_cols=75  Identities=29%  Similarity=0.530  Sum_probs=52.0

Q ss_pred             EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEE-EecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEE
Q psy18191        149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL  223 (238)
Q Consensus       149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~-~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L  223 (238)
                      +.|.|.+.|.|.|+++|+++|..+......... ...++.|.+..+-......|.|.|+|.|.|.+|...+..+.|
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI   76 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence            469999999999999999999987433222222 234566665433111113478999999999999987655554

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.54  E-value=6.3e-14  Score=95.17  Aligned_cols=79  Identities=27%  Similarity=0.404  Sum_probs=55.1

Q ss_pred             CCcEEEEEEEeeeCCCEEEEEeC----CEEeeccCCccEEEec-CCc-----EEEEEeecCCCCCCCeEEEEEEEeCCCc
Q psy18191        146 HEPTTLNCKADGYPEPRIEWYKD----GSLVSAEIGSHRILLP-AGS-----LFFLSLVHGKKDTDSGVYWCVARNELGF  215 (238)
Q Consensus       146 G~~~~L~C~~~g~P~p~i~W~~~----g~~l~~~~~~~~~~~~-~~~-----l~~~~vi~~v~~~d~G~Y~C~a~N~~G~  215 (238)
                      |+++.|.|.+.|.|.|.++|+++    |..+............ .+.     ....+.|+.++.+|+|.|+|.|.|.+|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            67899999999999999999984    4444322111111111 110     0012236777999999999999999999


Q ss_pred             eeEEEEEEEE
Q psy18191        216 ARSKNATLDV  225 (238)
Q Consensus       216 ~~s~~~~L~V  225 (238)
                      .. .++.|.|
T Consensus        81 ~~-~~a~L~V   89 (90)
T cd05858          81 SH-HSAWLTV   89 (90)
T ss_pred             cc-ceEEEEE
Confidence            96 5999987

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.54  E-value=3.9e-14  Score=91.70  Aligned_cols=71  Identities=32%  Similarity=0.576  Sum_probs=54.7

Q ss_pred             EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191        149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA  226 (238)
Q Consensus       149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~  226 (238)
                      +.|.|.+.|.|.|.+.|++++..+...  ........+.|.    |..+..+|+|.|+|.|.|..|... ..+.|.|.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~--~~~~~~~~~~L~----i~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~   71 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPAD--RTKFENFNKTLK----IDNVSEEDDGEYRCTASNSLGSAR-HTISVTVE   71 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCC--ceeEecCCCEEE----ECCCCHHHCEEEEEEEEeCCceEE-EEEEEEEC
Confidence            469999999999999999998876532  112222234454    566699999999999999999996 58888873

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>KOG4222|consensus

Probab=99.54  E-value=2.3e-14  Score=130.29  Aligned_cols=193  Identities=21%  Similarity=0.210  Sum_probs=143.6

Q ss_pred             hcccceeEEeecCCCCCCCCCCCCcceeeeeccc---------------cccCCCcccccCCCccEEEeccccccc--cc
Q psy18191         16 ENSSQRCIKINLPKASHSPSSRPDQNYLRVSGFA---------------DLTQPPARGGFYPKPICLRFQDLLPQS--KQ   78 (238)
Q Consensus        16 ~~~~~~~i~~~~~~~~~~~~~r~~~~~~~v~~~~---------------~~~~pp~~~~~~~~~~~~w~~~~~~~~--~~   78 (238)
                      .-+.|.|.+.|-.....+.+.+.+...++- +|.               ....||.   ..+.+++.|-|++.++.  ..
T Consensus       103 d~G~y~cvasn~~g~avSr~a~L~vavlrd-dfrv~prd~~~a~ge~avlEcgpP~---ghpeptvSw~Kdg~pl~~~~~  178 (1281)
T KOG4222|consen  103 DHGVYSCVASNRLGEAVSRGASLIVAVLRD-DFRVSPRDVQAAVGEEAVLECGPPR---GHPEPTVSWVKDGKPLDHYDV  178 (1281)
T ss_pred             CCceeEeeecCccceeeecCceEEEEEech-hcccCcccccccccceeEEeccCCC---CCCCCcceeecCCCccccccc
Confidence            568899999999998888888776555421 111               1233332   35689999999998654  22


Q ss_pred             -eE-----EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEE
Q psy18191         79 -GL-----MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLN  152 (238)
Q Consensus        79 -g~-----~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~  152 (238)
                       ++     -.|+|.++...|.|.|.|.++|...  .          .......+.+..+|.+...+.++.+..|..+.+.
T Consensus       179 ~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG--~----------ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~  246 (1281)
T KOG4222|consen  179 PIIALISGGNLLISNVRKSDEGTYACVATNMVG--E----------RESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFD  246 (1281)
T ss_pred             eeEEEecCCcEEEeccccCCCceeeeeeccccc--c----------cccccceeeeccCCccccccccceeecccccccc
Confidence             22     2567788999999999987777422  1          0111223337789999999999999999999999


Q ss_pred             EEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCCCC
Q psy18191        153 CKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST  231 (238)
Q Consensus       153 C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~  231 (238)
                      |.+.|+|.|.++|.+++..+..  ....+.....++.+.    .++..|.|.|.|.|.|.+|... ..+.|.|+++++.
T Consensus       247 c~v~GdP~P~Vrwkk~~~~~P~--~ry~i~~d~qtl~i~----r~tp~deg~y~C~a~n~vG~l~-asa~ltV~apP~f  318 (1281)
T KOG4222|consen  247 CRVGGDPQPTVRWKKDDPSLPR--SRYSILDDTQTLRID----RVTPTDEGTYVCPAENLVGGLE-ASATLTVQAPPSF  318 (1281)
T ss_pred             cccCCCCCCceeeeccCCCCCc--cceeeeecccccccc----ccCCCcccceeeeccccccccc-cccceEEecCccc
Confidence            9999999999999998877764  234444555677644    4499999999999999999997 5999999988764

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.54  E-value=3.8e-14  Score=94.33  Aligned_cols=79  Identities=28%  Similarity=0.404  Sum_probs=59.0

Q ss_pred             eEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEE
Q psy18191        141 AVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKN  220 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~  220 (238)
                      +....|+++.|.|.+.|.|.|.+.|++++..+.... ..........|.    |..+..+|+|.|+|.|.|..|... ..
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~-~~~~~~~~~~L~----i~~v~~~D~G~Y~C~a~N~~G~~~-~~   77 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTE-IGESRKKKWTLS----LKNLKPEDSGKYTCHVSNRAGEIN-AT   77 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCc-cceecCceEEEE----EccCChhhCEEEEEEEEcCCccEE-EE
Confidence            446779999999999999999999999998775421 111111112333    566699999999999999999986 47


Q ss_pred             EEEEE
Q psy18191        221 ATLDV  225 (238)
Q Consensus       221 ~~L~V  225 (238)
                      +.|.|
T Consensus        78 ~~v~v   82 (82)
T cd05856          78 YKVDV   82 (82)
T ss_pred             EEEeC
Confidence            77764

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>KOG4222|consensus

Probab=99.54  E-value=5.2e-14  Score=128.00  Aligned_cols=158  Identities=23%  Similarity=0.264  Sum_probs=111.2

Q ss_pred             CCCccEEEeccccc-ccc----------ce-EEEEEc--CCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceec
Q psy18191         61 YPKPICLRFQDLLP-QSK----------QG-LMYLVG--SQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHG  126 (238)
Q Consensus        61 ~~~~~~~w~~~~~~-~~~----------~g-~~~l~~--~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~  126 (238)
                      .|.|+++|||+|.. ...          .| +..+..  +.....|.|.|+|.+.|.+.    .|.+....   +.++.+
T Consensus        58 ~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g----~avSr~a~---L~vavl  130 (1281)
T KOG4222|consen   58 DPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVASNRLG----EAVSRGAS---LIVAVL  130 (1281)
T ss_pred             CCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEeeecCccc----eeeecCce---EEEEEe
Confidence            45789999999952 211          11 111221  12222378888877777544    33333332   221111


Q ss_pred             CCccCCEEEeCCCceEEeCCCcEEEEEE-EeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEE
Q psy18191        127 DGYRVPRITEHPASAVVPRHEPTTLNCK-ADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       127 ~v~~~P~i~~~~~~~~~~~G~~~~L~C~-~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                          +-.|...|..+.+..|+.+.|.|. -.|.|.|.+.|.|+|+++.......+..+++|.|.|..+    ...|.|.|
T Consensus       131 ----rddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnv----rksD~GtY  202 (1281)
T KOG4222|consen  131 ----RDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNV----RKSDEGTY  202 (1281)
T ss_pred             ----chhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEecc----ccCCCcee
Confidence                223445566778889999999998 579999999999999999855445666788999986655    99999999


Q ss_pred             EEEEEeCCCceeEEEEEEEEccCCCCCC
Q psy18191        206 WCVARNELGFARSKNATLDVAGKISTAT  233 (238)
Q Consensus       206 ~C~a~N~~G~~~s~~~~L~V~~~~~~~~  233 (238)
                      .|+|+|.+|..++..++|.|++++..-.
T Consensus       203 ~CVatNmvG~ReS~~A~lsv~e~P~f~~  230 (1281)
T KOG4222|consen  203 ACVATNMVGERESIPARLSVQEKPWFWK  230 (1281)
T ss_pred             eeeecccccccccccceeeeccCCcccc
Confidence            9999999999998999999999886543

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.53  E-value=1.3e-13  Score=90.67  Aligned_cols=73  Identities=21%  Similarity=0.439  Sum_probs=52.1

Q ss_pred             EEEEEeeeCCCEEEEEeCCEEeeccCCcc-EE-EecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEE
Q psy18191        151 LNCKADGYPEPRIEWYKDGSLVSAEIGSH-RI-LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLD  224 (238)
Q Consensus       151 L~C~~~g~P~p~i~W~~~g~~l~~~~~~~-~~-~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~  224 (238)
                      +.|.+.|+|.|.++|+|+|..|..+.... .+ ..........+.|..+..+|+|.|+|.|+|.+|+.. .++.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~-~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDE-KNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccc-eEEEee
Confidence            67999999999999999999997531100 11 111111222334777799999999999999999986 476654

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.53  E-value=1.4e-13  Score=91.38  Aligned_cols=73  Identities=19%  Similarity=0.329  Sum_probs=52.5

Q ss_pred             EEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecC-----CcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEE
Q psy18191        150 TLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPA-----GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLD  224 (238)
Q Consensus       150 ~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~-----~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~  224 (238)
                      .+.|.+.|.|.|.++|+|+|..+.... ........     ......++|..+..+|+|.|+|.|.|.+|...+ .+.|.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~-~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESD-YIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSK-SISAH   79 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCC-ceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeee-EEEee
Confidence            368999999999999999999997542 11111111     111222347778999999999999999999964 66664

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.53  E-value=9.6e-14  Score=91.18  Aligned_cols=73  Identities=32%  Similarity=0.685  Sum_probs=57.0

Q ss_pred             EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCC-cEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191        149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAG-SLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA  226 (238)
Q Consensus       149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~-~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~  226 (238)
                      +.|.|.+.|.|.|.+.|+|++..+............++ .|.    |..+..+|+|.|+|.|.|..|... .++.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~----I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELH----ISNVRYEDTGAYTCIAKNEAGVDE-DISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEE----ECcCCcccCEEEEEEEEcCCCCcc-eEEEEEEE
Confidence            46899999999999999999998865422222223333 243    566699999999999999999997 59999886

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.53  E-value=1.6e-13  Score=90.27  Aligned_cols=74  Identities=28%  Similarity=0.545  Sum_probs=52.1

Q ss_pred             EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEE-ecCCcEEEEEeecCCC-CCCCeEEEEEEEeCCCceeEEEEEE
Q psy18191        149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRIL-LPAGSLFFLSLVHGKK-DTDSGVYWCVARNELGFARSKNATL  223 (238)
Q Consensus       149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~~~l~~~~vi~~v~-~~d~G~Y~C~a~N~~G~~~s~~~~L  223 (238)
                      +.|.|.+.|.|.|.++|+|+|..+.......... ..++.|.+..+ .... .+|+|.|+|.|.|.+|...+..+.|
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~-~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFS-GGGRPEDYEGEYQCFARNNLGTALSNKILL   76 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEecc-CCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence            4699999999999999999998764322222222 34566665432 1112 2469999999999999997666554

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.52  E-value=6.6e-14  Score=92.70  Aligned_cols=73  Identities=37%  Similarity=0.661  Sum_probs=53.2

Q ss_pred             EEEEEEEeeeCCCEEEEEeCCEEeecc------CCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEE
Q psy18191        149 TTLNCKADGYPEPRIEWYKDGSLVSAE------IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNAT  222 (238)
Q Consensus       149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~------~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~  222 (238)
                      +.|.|.+.|.|.|.+.|++++......      ...+.....++.|.    |..+..+|+|.|.|.|.|..|...++.+.
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~----I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~   76 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLL----IKHVLEEDSGYYLCKVSNDVGADASKSMV   76 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEE----ECcCCcccCEEEEEEEEeCCCCCCceEEE
Confidence            479999999999999999964321110      11222234456666    45559999999999999999998777888


Q ss_pred             EEE
Q psy18191        223 LDV  225 (238)
Q Consensus       223 L~V  225 (238)
                      |.|
T Consensus        77 l~~   79 (79)
T cd05734          77 LTV   79 (79)
T ss_pred             EeC
Confidence            765

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.52  E-value=7.1e-14  Score=90.35  Aligned_cols=70  Identities=23%  Similarity=0.343  Sum_probs=51.5

Q ss_pred             EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCc-eeEEEEEEE
Q psy18191        149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGF-ARSKNATLD  224 (238)
Q Consensus       149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~-~~s~~~~L~  224 (238)
                      +.|.|.+.|.|.|++.|+|+|.++...  ..+....++.|.    |..+..+|+|.|+|.|.|.... .....++|.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--~~~~~~~~~~L~----I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~~   71 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEK--CSRYHVDGYSLV----IKDVTEEDAGIYTILLGIKQYNLFKNLTITLI   71 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCC--CcEEEeCCCEEE----ECcCCHHHCEEEEEEEEccccceEeeEEEEEE
Confidence            368999999999999999999988642  233444445555    5666999999999999998644 333344443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.50  E-value=1.2e-13  Score=94.39  Aligned_cols=82  Identities=24%  Similarity=0.369  Sum_probs=62.5

Q ss_pred             CceEEeCCCcEEEEEEEee-----eCCCEEEEEeCCEEeeccC-CccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        139 ASAVVPRHEPTTLNCKADG-----YPEPRIEWYKDGSLVSAEI-GSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g-----~P~p~i~W~~~g~~l~~~~-~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      .+..+.+|+.+.|.|.+.|     .|.|.+.|+|++..+.... ...++...++.|.    |..+..+|+|.|+|.+.|.
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~----I~~~~~~DsG~Y~C~~~N~   82 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLW----FLPAALEDSGLYTCVVRNS   82 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEE----EccCCcccCeEEEEEEcCC
Confidence            3566789999999999998     6899999999987643211 1233333456665    4555999999999999999


Q ss_pred             CCceeEEEEEEEE
Q psy18191        213 LGFARSKNATLDV  225 (238)
Q Consensus       213 ~G~~~s~~~~L~V  225 (238)
                      .|..+. .+.|.|
T Consensus        83 ~g~~~~-~~~L~v   94 (94)
T cd05756          83 TYCMKV-SISLTV   94 (94)
T ss_pred             CccEEE-EEEEEC
Confidence            999974 888865

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.49  E-value=1.2e-12  Score=103.50  Aligned_cols=107  Identities=15%  Similarity=0.152  Sum_probs=68.7

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEe-----
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKAD-----  156 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~-----  156 (238)
                      .|.+.++..+|+|.|+|.+.+..  |           .....+.+.+      ...+.+..+.+|+.+.|.|.+.     
T Consensus        99 ~L~I~~v~~~DsG~Y~C~a~N~~--~-----------~~~~~i~L~V------~~~~~~~~~~~G~~v~L~C~~~~~~~~  159 (227)
T PHA02826         99 NLWIGNVINIDEGIYICTISSGN--I-----------CEESTIRLTF------DSGTINYQFNSGKDSKLHCYGTDGISS  159 (227)
T ss_pred             eEEECCCChHHCEEEEEEEEECC--c-----------ceEEEEEEEE------ecCCccceEecCCCEEEEeeCCCCccc
Confidence            45666777777777776665522  1           1111111111      1122345678899999999985     


Q ss_pred             eeCCCEEEEEeCCEEeeccCCccEEEe-cCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191        157 GYPEPRIEWYKDGSLVSAEIGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       157 g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~  213 (238)
                      |.|.|+++|+|+|.++...  .+.... .++.|.    |..++.+|+|.|+|.|....
T Consensus       160 ~~p~p~I~WyKng~~l~~~--~r~~~~~~~~~L~----I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        160 TFKDYTLTWYKNGNIVLYT--DRIQLRNNNSTLV----IKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             cCCCceEEEEECCEECCCC--CCEEEeCCCCEEE----ECcCCHHhCEEEEEEEEEeE
Confidence            3467999999999998742  222222 233455    56669999999999999875

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.48  E-value=3.2e-13  Score=89.68  Aligned_cols=75  Identities=29%  Similarity=0.541  Sum_probs=54.0

Q ss_pred             CCcEEEEEEEeeeCCCEEEEEeCCE---EeeccCCc---cEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEE
Q psy18191        146 HEPTTLNCKADGYPEPRIEWYKDGS---LVSAEIGS---HRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSK  219 (238)
Q Consensus       146 G~~~~L~C~~~g~P~p~i~W~~~g~---~l~~~~~~---~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~  219 (238)
                      |+.+.|.|.+.|.|.|.+.|+|++.   .+......   .......+.|.    |..+..+|+|.|.|.|.|..|... .
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~----I~~~~~~D~G~Y~C~a~N~~G~~~-~   75 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLV----IYNAQPQDAGLYTCTARNSGGLLR-A   75 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEE----EccCCcccCEEEEEEEecCCceEE-E
Confidence            7889999999999999999999742   11111011   11112234454    556699999999999999999996 5


Q ss_pred             EEEEEE
Q psy18191        220 NATLDV  225 (238)
Q Consensus       220 ~~~L~V  225 (238)
                      .+.|.|
T Consensus        76 ~~~l~v   81 (81)
T cd05765          76 NFPLSV   81 (81)
T ss_pred             EEEEeC
Confidence            888875

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.48  E-value=3.9e-13  Score=87.94  Aligned_cols=73  Identities=30%  Similarity=0.473  Sum_probs=51.4

Q ss_pred             EEEEEEEee-eCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEE
Q psy18191        149 TTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNAT  222 (238)
Q Consensus       149 ~~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~  222 (238)
                      +.|.|.+.| .|.|.+.|+++|..+...................+.|..+..+|+|.|+|.|.|.+|.... ++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~-~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTV-TAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeE-EEe
Confidence            369999999 9999999999999887542222111111111122236777999999999999999999853 543

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.45  E-value=4.7e-13  Score=88.18  Aligned_cols=77  Identities=26%  Similarity=0.515  Sum_probs=59.3

Q ss_pred             CEEEeCCCceEEeCCCcEEEEEEEeeeCC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        132 PRITEHPASAVVPRHEPTTLNCKADGYPE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       132 P~i~~~~~~~~~~~G~~~~L~C~~~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      |.+...|....+.+|++++|.|.+.+.|. +.+.|++||..+..         .++.+.    |..+ .+|+|.|+|.|.
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~---------~~~~l~----i~~~-~~dsG~Y~C~a~   66 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET---------TTNSYR----IRAA-NNDSGEYRCQTQ   66 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec---------cCCeEE----Eeec-ccCCEEeEEECC
Confidence            56777788899999999999999999886 46999999987742         134443    5556 899999999999


Q ss_pred             eCCCceeEEEEEEEE
Q psy18191        211 NELGFARSKNATLDV  225 (238)
Q Consensus       211 N~~G~~~s~~~~L~V  225 (238)
                      |.   ..|..++|.|
T Consensus        67 ~~---~~S~~v~l~V   78 (78)
T cd05752          67 GS---SLSDPVHLEV   78 (78)
T ss_pred             CC---cCCCCEEEeC
Confidence            86   2235666654

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.44  E-value=2.1e-12  Score=107.96  Aligned_cols=148  Identities=12%  Similarity=0.116  Sum_probs=90.1

Q ss_pred             CCCccEEEecccccccc-----ceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEE
Q psy18191         61 YPKPICLRFQDLLPQSK-----QGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRIT  135 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~-----~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~  135 (238)
                      .+.+++.|+|++.....     .|. .+.+..+..+|+|.|+|.+.|..  |.....      ..+....   ..+|.+.
T Consensus        58 ~p~~~i~W~K~g~~~~~~~~~~~g~-~l~i~~~~~~DsG~Y~C~a~N~~--g~~~~s------~~L~V~~---~~~~~~~  125 (326)
T PHA02785         58 YNILDILWEKRGADNDRIIPIDNGS-NMLILNPTQSDSGIYICITKNET--YCDMMS------LNLTIVS---VSESNID  125 (326)
T ss_pred             CCCceEEEEECCCccceEEEccCCc-eEEEcccCcccCeEEEEEEECCC--cceEEE------EEEEEEe---cCCCccc
Confidence            45788999998742111     122 23456777899999998877642  211111      1111111   1223332


Q ss_pred             eCCCceEEeCCCcEEEEEE-----EeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        136 EHPASAVVPRHEPTTLNCK-----ADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~-----~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      ..+.+..+.+|+.+.|.|.     ..+.|.|.++|+++.. +.   ..+.....++.|.+..+    +.+|.|.|+|.|.
T Consensus       126 ~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~---~~r~~~~~~~~L~i~~v----~~~d~G~Y~C~~~  197 (326)
T PHA02785        126 LISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LR---NKRLKQRTPGIITIEDV----RKNDAGYYTCVLK  197 (326)
T ss_pred             eeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cC---CcceEecCCCeEEEeec----ChhhCeEEEEEEE
Confidence            2233455678999999997     2467999999988652 22   22233334566765554    9999999999999


Q ss_pred             eCCCceeE---EEEEEEEccC
Q psy18191        211 NELGFARS---KNATLDVAGK  228 (238)
Q Consensus       211 N~~G~~~s---~~~~L~V~~~  228 (238)
                      |..|....   ..+.|.|..+
T Consensus       198 n~~g~~~~~~t~~v~l~V~~~  218 (326)
T PHA02785        198 YIYGDKTYNVTRIVKLEVRDR  218 (326)
T ss_pred             eccCCEEEeEEEEEEEEEecc
Confidence            99987532   2456767543

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.43  E-value=2e-12  Score=86.60  Aligned_cols=70  Identities=23%  Similarity=0.473  Sum_probs=56.7

Q ss_pred             CCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191        137 HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~  213 (238)
                      .|.+..+..|+++.|.|.+.+ |.|.+.|+++|.++..+  ..++.+.++.|.|    .+++.+|+|.|+|.|.+..
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~--~~r~~~~~~~L~I----~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPE--SAKYLLYRDGLLI----FNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCC--CceEEEECCcEEE----eCCCHHHCEEEEEEEEecc
Confidence            366788999999999999864 77899999999998754  2345556777764    5559999999999999874

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.42  E-value=5.1e-12  Score=86.54  Aligned_cols=91  Identities=18%  Similarity=0.278  Sum_probs=65.6

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCE-EEEEeCCEEeeccCCccE-EEe--cCCcEEEEEeecCCCCCC-CeEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPR-IEWYKDGSLVSAEIGSHR-ILL--PAGSLFFLSLVHGKKDTD-SGVY  205 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~-i~W~~~g~~l~~~~~~~~-~~~--~~~~l~~~~vi~~v~~~d-~G~Y  205 (238)
                      ||.| .......+.+|+++.|.|.+.+.|+|. |.|.+++..|......+. +..  ..+.....+.|..+...| .|.|
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            6777 445678889999999999999988874 799998877765322222 221  122333444578877767 7999


Q ss_pred             EEEEEeCCCceeEEEEEE
Q psy18191        206 WCVARNELGFARSKNATL  223 (238)
Q Consensus       206 ~C~a~N~~G~~~s~~~~L  223 (238)
                      .|.|.|.+|++. ..+.|
T Consensus        81 ~C~a~N~~G~d~-~~i~L   97 (98)
T cd05898          81 NCTAWNSFGSGT-AIIQL   97 (98)
T ss_pred             EEEEEeCCccce-EEEEe
Confidence            999999999996 47665

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.40  E-value=2.9e-12  Score=86.77  Aligned_cols=85  Identities=18%  Similarity=0.291  Sum_probs=63.4

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      |..+.+.+|+++.|.|.+.+ |.+.+.|++++..+..... ..+.....+.|.    |..++.+|+|.|.|.|.|..+..
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~----I~~~~~~D~G~Y~C~a~~~~~~~   77 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLL----IRSVSPADAGVYTCQSVEHGFKQ   77 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEE----EccCCHHHCEEEEEEEecCccce
Confidence            45577889999999999977 8899999999987764311 123334445555    45559999999999999877665


Q ss_pred             eEEEEEEEEcc
Q psy18191        217 RSKNATLDVAG  227 (238)
Q Consensus       217 ~s~~~~L~V~~  227 (238)
                      ...++.|.|..
T Consensus        78 ~~~~~~l~V~~   88 (89)
T cd04979          78 TLATYSLNVLE   88 (89)
T ss_pred             eEeEEEEEEec
Confidence            55688888754

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.38  E-value=3e-12  Score=85.89  Aligned_cols=78  Identities=27%  Similarity=0.430  Sum_probs=60.8

Q ss_pred             eCCCceEEeCCCcEEEEEEEee-eCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        136 EHPASAVVPRHEPTTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      ..|....+.+|++++|.|.+.+ .|.|.+.|++++..+..     .....++.|.    |..++.+|+|.|.|.|.|..|
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~-----~~~~~~~~L~----I~~v~~~DsG~Y~C~a~n~~g   76 (85)
T cd05754           6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS-----RAMDFNGILT----IRNVQLSDAGTYVCTGSNMLD   76 (85)
T ss_pred             cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC-----cccccCCEEE----ECCCCHHHCEEEEEEEeccCC
Confidence            3466788899999999999864 78899999999866532     1122345555    566699999999999999999


Q ss_pred             ceeEEEEEE
Q psy18191        215 FARSKNATL  223 (238)
Q Consensus       215 ~~~s~~~~L  223 (238)
                      .... .+.|
T Consensus        77 ~~~~-~~~l   84 (85)
T cd05754          77 TDEA-TATL   84 (85)
T ss_pred             eEeE-EEEE
Confidence            9974 7766

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.37  E-value=1.1e-11  Score=82.87  Aligned_cols=80  Identities=30%  Similarity=0.512  Sum_probs=58.8

Q ss_pred             eEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecC--CcEEEEEeecCCCCCCCeEEEEEEEeCCCceeE
Q psy18191        141 AVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPA--GSLFFLSLVHGKKDTDSGVYWCVARNELGFARS  218 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~--~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s  218 (238)
                      ..+..|+.+.|.|.+.+.|.|.+.|++++..+.............  ..|.    |..+..+|+|.|.|.|.|..|... 
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~----i~~~~~~d~g~Y~C~~~n~~g~~~-   78 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLI----LESVVPSDSGKYTCIVENKYGSIN-   78 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEE----EeECCcccCEEEEEEEEECCceEE-
Confidence            456789999999999999999999999998876421111111111  1233    455699999999999999999986 


Q ss_pred             EEEEEEE
Q psy18191        219 KNATLDV  225 (238)
Q Consensus       219 ~~~~L~V  225 (238)
                      .++.|.|
T Consensus        79 ~~~~l~v   85 (85)
T cd05729          79 HTYKVDV   85 (85)
T ss_pred             EEEEEeC
Confidence            4887764

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.36  E-value=6.8e-12  Score=83.98  Aligned_cols=79  Identities=19%  Similarity=0.214  Sum_probs=55.8

Q ss_pred             CCcEEEEEEEeee--CCCEEEEEeCCEEeeccCC-c-cEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEE
Q psy18191        146 HEPTTLNCKADGY--PEPRIEWYKDGSLVSAEIG-S-HRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNA  221 (238)
Q Consensus       146 G~~~~L~C~~~g~--P~p~i~W~~~g~~l~~~~~-~-~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~  221 (238)
                      |+.+.|.|.+.|.  |.|.+.|++++..+..... . .............+.|..++.+|+|.|.|.|.|..|... .++
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~-~s~   79 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQK-EST   79 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceE-EEE
Confidence            7899999999999  8899999987765432100 0 111111112223334788899999999999999999986 588


Q ss_pred             EEEE
Q psy18191        222 TLDV  225 (238)
Q Consensus       222 ~L~V  225 (238)
                      .|.|
T Consensus        80 ~v~v   83 (84)
T cd05742          80 KVNI   83 (84)
T ss_pred             EEEE
Confidence            8876

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.34  E-value=5.3e-12  Score=85.86  Aligned_cols=74  Identities=18%  Similarity=0.308  Sum_probs=57.6

Q ss_pred             CceEEeCCCcEEEEEEE-eeeCCCEEEEEeCCEEeeccCCccEEEe-cCCcEEEEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        139 ASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      ....+.+|+.+.|.|.. .|.|.|.+.|++++.++....+.+++.. .+|+|.+..+    +.+|+|.|+|.|+|.+...
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v----~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKV----EASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeec----CHhhCceeEEEEEecccCC
Confidence            34678899999999975 7899999999999876432213334444 4799987766    9999999999999988554

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.31  E-value=1.8e-11  Score=80.24  Aligned_cols=72  Identities=24%  Similarity=0.453  Sum_probs=49.2

Q ss_pred             EEEEEEEee-eCCCEEEEEeCCEEeeccCC-ccEEEecC-CcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEE
Q psy18191        149 TTLNCKADG-YPEPRIEWYKDGSLVSAEIG-SHRILLPA-GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNAT  222 (238)
Q Consensus       149 ~~L~C~~~g-~P~p~i~W~~~g~~l~~~~~-~~~~~~~~-~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~  222 (238)
                      +.|.|.+.+ .|.|.+.|+++|..+..... ..++.... +.. ..+.|..+..+|+|.|+|.|.|..|... .++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~-~~L~I~~~~~~DsG~Y~C~a~N~~g~~~-~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKS-SELQISKASLADNGEYKCMVSSKLGNDS-VTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcE-EEEEECcCCcccCEEEEEEEEeCCCcee-EEEe
Confidence            469999874 68899999999998864321 12222211 111 1123677799999999999999999985 3543

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.31  E-value=5.9e-11  Score=79.39  Aligned_cols=80  Identities=25%  Similarity=0.323  Sum_probs=55.0

Q ss_pred             CCcEEEEEEEeeeCCCEEEEEeCCEEeeccC-CccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC--ceeEEEEE
Q psy18191        146 HEPTTLNCKADGYPEPRIEWYKDGSLVSAEI-GSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG--FARSKNAT  222 (238)
Q Consensus       146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~-~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G--~~~s~~~~  222 (238)
                      |+++.|.|.+.|.|.|.+.|++.+....... ...............+.|..++.+|+|.|.|.|.|..+  .. ++++.
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~-~~sv~   79 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKA-FKKVN   79 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcce-eEEEE
Confidence            7899999999999999999998765432100 00011122222233334778899999999999999876  44 46888


Q ss_pred             EEEc
Q psy18191        223 LDVA  226 (238)
Q Consensus       223 L~V~  226 (238)
                      |+|.
T Consensus        80 i~V~   83 (84)
T cd05861          80 ITVH   83 (84)
T ss_pred             EEEe
Confidence            8875

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.31  E-value=1.1e-11  Score=82.67  Aligned_cols=75  Identities=25%  Similarity=0.329  Sum_probs=58.1

Q ss_pred             ceEEeCCCcEEEEEEEe-eeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeE
Q psy18191        140 SAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARS  218 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s  218 (238)
                      ...+.+|+.++|.|.+. +.+.+.+.|+|+|..+...       .....+.    |..++.+|+|.|.|.|.|..|...|
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~-------~~~~~l~----I~~~~~~dsG~Y~C~~~~~~~~~~s   76 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS-------HSNSNLS----IPQATLSDSGSYHCSGIIGSYDYSS   76 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc-------CCCceEE----ECccCHHHCEEEEEEEEeCCceecC
Confidence            45688999999999985 4667889999999766421       1133444    5556999999999999999998877


Q ss_pred             EEEEEEE
Q psy18191        219 KNATLDV  225 (238)
Q Consensus       219 ~~~~L~V  225 (238)
                      ..+.|+|
T Consensus        77 ~~~~i~~   83 (83)
T cd05753          77 EPVSITV   83 (83)
T ss_pred             CCEEEEC
Confidence            7777765

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.29  E-value=7.4e-11  Score=80.64  Aligned_cols=85  Identities=16%  Similarity=0.185  Sum_probs=56.6

Q ss_pred             CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCC-----ccEEE-ecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG-----SHRIL-LPAGSLFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~-----~~~~~-~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      .+..+.+|+++.|.|.+.|.|.|.+.|++++..+...+.     ..++. .........+.|.++..+|.|.|+|.+...
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~   84 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM   84 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence            578899999999999999999999999998764321100     11221 111111122237888999999999999983


Q ss_pred             CCceeEEEEEEEE
Q psy18191        213 LGFARSKNATLDV  225 (238)
Q Consensus       213 ~G~~~s~~~~L~V  225 (238)
                      ....  ..++|.|
T Consensus        85 ~~~~--~~~~~~v   95 (95)
T cd05882          85 PVRT--AKATVTV   95 (95)
T ss_pred             cccc--EEEEEEC
Confidence            3222  3556554

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.27  E-value=3.7e-11  Score=81.61  Aligned_cols=78  Identities=19%  Similarity=0.378  Sum_probs=57.7

Q ss_pred             ceEEeCCCcEEEEEEEee-----eCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        140 SAVVPRHEPTTLNCKADG-----YPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g-----~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      ...+.+|++..|.|...+     .|.|.+.|+|++.++...  ..++ ..++.|.+    +.+..+|+|.|+|.|.|..|
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~--~~~~-~~~~~L~I----~~v~~~DsG~YtC~~~n~~~   76 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD--RKRF-VKGSKLLI----QNVTEEDAGNYTCKLTFTHN   76 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCC--ccEE-ecCCEEEE----eeCChhhCEEEEEEEEecCC
Confidence            356778999999998643     367899999999988742  2222 25666764    44599999999999999998


Q ss_pred             ceeEEEEEEEE
Q psy18191        215 FARSKNATLDV  225 (238)
Q Consensus       215 ~~~s~~~~L~V  225 (238)
                      ... ..+++.+
T Consensus        77 ~~~-~~~t~t~   86 (92)
T cd05757          77 GKQ-YNVTRTI   86 (92)
T ss_pred             CEE-EEEEEEE
Confidence            874 3554443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.26  E-value=6.5e-11  Score=77.95  Aligned_cols=80  Identities=33%  Similarity=0.652  Sum_probs=60.7

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      +|.+...+  ..+.+|+.+.|.|.+.+.|.+.+.|++++..+...         .+.+.    +..+..+|+|.|.|.|.
T Consensus         1 kP~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~---------~~~~~----~~~~~~~~~g~y~C~~~   65 (80)
T PF13895_consen    1 KPVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS---------QNGLF----IPNVSPEDSGNYTCRAS   65 (80)
T ss_dssp             --EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE---------SSEEE----ESSEEGGGTEEEEEEEE
T ss_pred             CcEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee---------eeeee----eeeeccccCEEEEEEEE
Confidence            46666544  66889999999999999999999999999777632         11132    34558999999999999


Q ss_pred             eCCCceeEEEEEEEE
Q psy18191        211 NELGFARSKNATLDV  225 (238)
Q Consensus       211 N~~G~~~s~~~~L~V  225 (238)
                      |..|...+.++.|.|
T Consensus        66 ~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   66 NGSGSNTSTSVNVTV   80 (80)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCCeEeeeEEeeC
Confidence            987766566777776

...

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.25  E-value=3e-11  Score=82.02  Aligned_cols=74  Identities=20%  Similarity=0.281  Sum_probs=59.0

Q ss_pred             CCceEEeCCCcEEEEEE-EeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCe-EEEEEEEeCCCc
Q psy18191        138 PASAVVPRHEPTTLNCK-ADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSG-VYWCVARNELGF  215 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~-~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G-~Y~C~a~N~~G~  215 (238)
                      ...+.+.+|+.+.|.|. ..|.|.|.|.|++++..+... ..+.....+|+|.+..+    ..+|+| .|.|.|.|....
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~-~~Ri~~~~~GnL~fs~v----~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQ-DERVSMGQNGNLYFANV----EEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccc-cccEEECCCceEEEEEE----ehhhCCCCeEEEEEccccc
Confidence            45688999999999997 699999999999877554432 34444456799997777    999999 799999998744


Q ss_pred             e
Q psy18191        216 A  216 (238)
Q Consensus       216 ~  216 (238)
                      .
T Consensus        85 ~   85 (95)
T cd05845          85 T   85 (95)
T ss_pred             c
Confidence            3

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.21  E-value=2.3e-10  Score=78.28  Aligned_cols=84  Identities=17%  Similarity=0.190  Sum_probs=56.6

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeec-c-----CCccEEEec--CCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA-E-----IGSHRILLP--AGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~-~-----~~~~~~~~~--~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      +.++.+.+|+++.|.|.+.+.|.|.+.|++.+..+.. .     ...+.....  .+...  +.|..++.+|+|.|.|.+
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~s--L~I~~v~~~DsG~Y~C~~   81 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELS--ISISDVSLSDEGQYTCSL   81 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEE--EEECcCCcccCEEEEEEe
Confidence            4678899999999999999999999999863322111 0     011221111  12222  237788999999999999


Q ss_pred             EeCCCceeEEEEEEEE
Q psy18191        210 RNELGFARSKNATLDV  225 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V  225 (238)
                      .+..+..  ..++|.|
T Consensus        82 ~t~~~~~--~~~~l~v   95 (95)
T cd07701          82 FTMPVKT--SKAYLTV   95 (95)
T ss_pred             EeecCcc--EEEEEEC
Confidence            9965443  4777765

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.19  E-value=2e-10  Score=71.56  Aligned_cols=63  Identities=38%  Similarity=0.646  Sum_probs=49.0

Q ss_pred             CCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        145 RHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       145 ~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      +|+++.|.|.+.+.|.+.+.|++++..+.   ...........|.+.    .+...|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~---~~~~~~~~~~~L~i~----~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP---ESNRLSASGSTLTIK----SVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC---CCCEEecCCcEEEEe----eCCcccCEEEEEEEecCCC
Confidence            48899999999899999999999988776   122233334556544    4499999999999999876

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.13  E-value=7.3e-10  Score=75.16  Aligned_cols=81  Identities=22%  Similarity=0.356  Sum_probs=56.7

Q ss_pred             eEEeCCCcEEEEEEEeeeCCCEEEEEeCCE--Eeecc-CCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE-eCCCce
Q psy18191        141 AVVPRHEPTTLNCKADGYPEPRIEWYKDGS--LVSAE-IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR-NELGFA  216 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~--~l~~~-~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~-N~~G~~  216 (238)
                      +...+|+.+.|.|.. +.|.|.+.|++.+.  ..... ....+....++.|.|..    +..+|+|.|+|.|. |..+..
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~----~~~~DsG~Y~C~a~~~~~~~~   80 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRS----LQRSDAGVYTCTAVEHSFSQT   80 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEee----CChhHCEEEEEEEEccCCeEE
Confidence            557889999999996 58999999998432  21110 01233344556666544    49999999999998 566766


Q ss_pred             eEEEEEEEEcc
Q psy18191        217 RSKNATLDVAG  227 (238)
Q Consensus       217 ~s~~~~L~V~~  227 (238)
                      . ..++|.|..
T Consensus        81 ~-~~~~l~v~~   90 (91)
T cd05871          81 L-AKYTLHVIE   90 (91)
T ss_pred             E-EEEEEEEec
Confidence            5 588888864

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.11  E-value=8.7e-10  Score=74.01  Aligned_cols=81  Identities=21%  Similarity=0.211  Sum_probs=53.7

Q ss_pred             CCcEEEEEEEeeeCC--CEEEEEeCCEEeeccC--Cc-cEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEE
Q psy18191        146 HEPTTLNCKADGYPE--PRIEWYKDGSLVSAEI--GS-HRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKN  220 (238)
Q Consensus       146 G~~~~L~C~~~g~P~--p~i~W~~~g~~l~~~~--~~-~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~  220 (238)
                      |+++.|.|.+.+.|.  ..+.|...+..+....  .. .............+.|..++.+|+|.|+|.|.|..|... ..
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~-~~   79 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAK-NS   79 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEec-cc
Confidence            789999999988664  4789988765432100  00 111111111222333677799999999999999999886 48


Q ss_pred             EEEEEcc
Q psy18191        221 ATLDVAG  227 (238)
Q Consensus       221 ~~L~V~~  227 (238)
                      +.|.|.+
T Consensus        80 t~~~V~~   86 (86)
T cd05862          80 TIVIVHE   86 (86)
T ss_pred             EEEEEeC
Confidence            8998864

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.05  E-value=3.9e-09  Score=72.00  Aligned_cols=86  Identities=16%  Similarity=0.173  Sum_probs=63.9

Q ss_pred             CceEEeCCCcEEEEEEEeeeCCCE-EEEEeCCEEeeccCCccEEEecC---CcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEPR-IEWYKDGSLVSAEIGSHRILLPA---GSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~---~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      ..+.+..|+.+.|.|.+++.|+|+ +.|.+++..+...... .....+   ......+.|..++.+|.|.|+|.|.|..+
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~-~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~   89 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDH-YVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA   89 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccc-eeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence            357789999999999999999998 9999998776543222 222111   11222223556699999999999999999


Q ss_pred             ceeEEEEEEEEc
Q psy18191        215 FARSKNATLDVA  226 (238)
Q Consensus       215 ~~~s~~~~L~V~  226 (238)
                      ... .++.|.|+
T Consensus        90 ~~s-~tF~l~v~  100 (101)
T cd05860          90 SAS-VTFNVYVN  100 (101)
T ss_pred             eEE-EEEEEEEe
Confidence            996 69998875

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.05  E-value=1.7e-09  Score=73.61  Aligned_cols=80  Identities=18%  Similarity=0.313  Sum_probs=54.6

Q ss_pred             eEEeCCCcEEEEEEE-e----eeCCCEEEEEeCCEEeeccCCccEEEe--cCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191        141 AVVPRHEPTTLNCKA-D----GYPEPRIEWYKDGSLVSAEIGSHRILL--PAGSLFFLSLVHGKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~-~----g~P~p~i~W~~~g~~l~~~~~~~~~~~--~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~  213 (238)
                      ..+..|.+..|.|.- .    ..+.|.++|+||+.++...  ..+...  ....|.    |..|..+|+|.|+|.|.|..
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~--~~~~~~~~~~~~L~----I~~v~~~D~G~YtC~~~~~~   78 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKD--NEKFYSLKGSTYLH----IIDVSLNDSGYYTCKLQFTH   78 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCC--CcceEecCCCCEEE----EEEcChhhCEEEEEEEEEee
Confidence            456778999999972 2    3467899999999988743  222222  223454    45559999999999999997


Q ss_pred             Cce---eEEEEEEEEc
Q psy18191        214 GFA---RSKNATLDVA  226 (238)
Q Consensus       214 G~~---~s~~~~L~V~  226 (238)
                      |..   .++.+.|.|.
T Consensus        79 ~g~~y~vtr~~~l~v~   94 (95)
T cd05897          79 EGKKYNITRIIKLRIV   94 (95)
T ss_pred             CCEEEEEEEEEEEEEc
Confidence            654   2234555553

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.03  E-value=5.2e-09  Score=76.82  Aligned_cols=120  Identities=17%  Similarity=0.122  Sum_probs=73.5

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee-CC
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY-PE  160 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~  160 (238)
                      .|.+.+++..|+|.|.|...+..  |.           ....+.+.+..+|.+...+......+|+.+.|.|.+.|. |.
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~--~~-----------~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~   68 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPP--HQ-----------AQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPL   68 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccC--cc-----------eeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCC
Confidence            36778899999999997765421  11           111122235578888776666655588999999999986 54


Q ss_pred             -CEEEEEeCCEEeec-----cC--CccEEEecCCcEEEEEeecCC--CCCCCeEEEEEEEeCCC
Q psy18191        161 -PRIEWYKDGSLVSA-----EI--GSHRILLPAGSLFFLSLVHGK--KDTDSGVYWCVARNELG  214 (238)
Q Consensus       161 -p~i~W~~~g~~l~~-----~~--~~~~~~~~~~~l~~~~vi~~v--~~~d~G~Y~C~a~N~~G  214 (238)
                       +.|.|+++|.....     ..  ........+|++.+...+...  ...+...|+|.+.+..-
T Consensus        69 ~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l  132 (139)
T cd05771          69 DVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL  132 (139)
T ss_pred             CeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence             48999999854221     10  011122345666554443322  22235589999987543

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.02  E-value=5.6e-09  Score=71.43  Aligned_cols=85  Identities=18%  Similarity=0.207  Sum_probs=54.5

Q ss_pred             CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEe-eccC----CccEEEe-cCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLV-SAEI----GSHRILL-PAGSLFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l-~~~~----~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      .++.+.+|+++.|.|.+.+.|.+.+.|++.+..+ ....    ...++.. ....-...+.|..++.+|+|.|.|.+.+.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   84 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM   84 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence            5678899999999999998899999998632211 1000    1112221 11111112237778999999999999987


Q ss_pred             CCceeEEEEEEEE
Q psy18191        213 LGFARSKNATLDV  225 (238)
Q Consensus       213 ~G~~~s~~~~L~V  225 (238)
                      ....  ..+.|.|
T Consensus        85 ~~~~--~~~~~~v   95 (95)
T cd05717          85 PVQT--AKATVTV   95 (95)
T ss_pred             CCce--EEEEEEC
Confidence            6443  3666654

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>smart00410 IG_like Immunoglobulin like

Probab=99.00  E-value=1.9e-08  Score=66.27  Aligned_cols=83  Identities=35%  Similarity=0.561  Sum_probs=60.0

Q ss_pred             CceEEeCCCcEEEEEEEeeeCCCEEEEEeC-CEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEPRIEWYKD-GSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      ..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+...  ........+. .....|..+...|+|.|.|.+.|..+...
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~--~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~   78 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAES--GRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSAS   78 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCC--CcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence            456778999999999999888899999998 7766521  2222222211 11222556699999999999999999886


Q ss_pred             EEEEEEEE
Q psy18191        218 SKNATLDV  225 (238)
Q Consensus       218 s~~~~L~V  225 (238)
                      . .+.|.|
T Consensus        79 ~-~~~l~V   85 (86)
T smart00410       79 S-TTTLTV   85 (86)
T ss_pred             E-EEEEEE
Confidence            4 577776

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=99.00  E-value=1.9e-08  Score=66.27  Aligned_cols=83  Identities=35%  Similarity=0.561  Sum_probs=60.0

Q ss_pred             CceEEeCCCcEEEEEEEeeeCCCEEEEEeC-CEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEPRIEWYKD-GSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      ..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+...  ........+. .....|..+...|+|.|.|.+.|..+...
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~--~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~   78 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAES--GRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSAS   78 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCC--CcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence            456778999999999999888899999998 7766521  2222222211 11222556699999999999999999886


Q ss_pred             EEEEEEEE
Q psy18191        218 SKNATLDV  225 (238)
Q Consensus       218 s~~~~L~V  225 (238)
                      . .+.|.|
T Consensus        79 ~-~~~l~V   85 (86)
T smart00409       79 S-TTTLTV   85 (86)
T ss_pred             E-EEEEEE
Confidence            4 577776

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.98  E-value=3.3e-09  Score=72.20  Aligned_cols=75  Identities=17%  Similarity=0.256  Sum_probs=51.9

Q ss_pred             eEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccE---------------E-EecCCcEEEEEeecCCCCCCCeE
Q psy18191        141 AVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHR---------------I-LLPAGSLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~---------------~-~~~~~~l~~~~vi~~v~~~d~G~  204 (238)
                      +.+.+|++++|.|.+.+.+.+.+.|++++...........               . ...++.  ..+.|..++.+|+|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~--~~L~I~~l~~sDsgt   79 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGS--FPLIIKNLKIEDSDT   79 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCe--EEEEECCCCHHHCEE
Confidence            4567899999999999999999999977633211100000               0 012222  223478889999999


Q ss_pred             EEEEEEeCCCcee
Q psy18191        205 YWCVARNELGFAR  217 (238)
Q Consensus       205 Y~C~a~N~~G~~~  217 (238)
                      |.|.+.|..++.+
T Consensus        80 Y~C~v~~~~~~~~   92 (94)
T cd07690          80 YICEVEDKKEEVE   92 (94)
T ss_pred             EEEEECCccceEE
Confidence            9999999988764

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.95  E-value=5.7e-09  Score=68.54  Aligned_cols=65  Identities=17%  Similarity=0.390  Sum_probs=44.2

Q ss_pred             cEEEEEEE-eeeCCCEEEEEeCCEEeeccCC---ccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        148 PTTLNCKA-DGYPEPRIEWYKDGSLVSAEIG---SHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       148 ~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~---~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      .+.|.|.+ .|.|+++|+||+++.+|.....   ........+.|.+    ......|.+.|+|.|.|.++..
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~----~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRF----PVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEE----EeeeccCCcEEEEEEEChhhCC
Confidence            36899996 6789999999999999864210   0000011123333    3347778889999999998764

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.89  E-value=2.8e-09  Score=69.00  Aligned_cols=74  Identities=31%  Similarity=0.571  Sum_probs=48.1

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeC-CCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYP-EPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P-~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      ||.|...+.......+. +.|.|.+.+.| .+.++|+ +....... .........+.|.    |..+..+|.|.|+|.|
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~-~~~~~~~~~~~L~----i~~v~~~~~g~y~C~a   73 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNS-NSRGSSSSNSTLT----ISNVTRSDNGTYTCIA   73 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEE-EEEEEEEEEEEEE----ESSCCGGGTEEEEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceee-eeeeccceeeEEE----EccCCHHhCcEEEEEE
Confidence            57777776666655555 99999998887 8899999 22111110 0011111223333    5677999999999999


Q ss_pred             Ee
Q psy18191        210 RN  211 (238)
Q Consensus       210 ~N  211 (238)
                      .|
T Consensus        74 ~N   75 (75)
T PF13927_consen   74 SN   75 (75)
T ss_dssp             EE
T ss_pred             EC
Confidence            98

...

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.88  E-value=8.8e-09  Score=64.87  Aligned_cols=62  Identities=24%  Similarity=0.377  Sum_probs=43.1

Q ss_pred             CCcEEEEEEE-eeeCCCEEEEEeCCEEeeccCCccEEEecCCcEE-EEEeecCCCCCCCeEEEEEE
Q psy18191        146 HEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF-FLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       146 G~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~-~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      |+.+.|.|.+ .+.+.+.+.|++++..+...  ........+... ..+.|..++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEG--STTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEE--EEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCc--ceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 78888999999998765432  111112222211 11337888999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.87  E-value=2.7e-08  Score=66.23  Aligned_cols=65  Identities=18%  Similarity=0.345  Sum_probs=49.9

Q ss_pred             CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      .+.++..|+++.|.|...+. .+.+.|+++|..+..+   .++......+.+..+    ..+|+|.|.|.+.-
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~---~r~~~~~~GLlI~~~----~~~dsG~Y~C~s~E   68 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQ---FSYRVGTDGLLILVT----SPEHSGTYRCYSEE   68 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCC---cceEEeCCCCEEEEC----CHhhCEEEEEEEec
Confidence            45788999999999998775 6699999999988642   334444444554444    99999999999883

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.85  E-value=2.4e-08  Score=68.36  Aligned_cols=81  Identities=26%  Similarity=0.389  Sum_probs=57.9

Q ss_pred             ceEEeCCCcEEEEEEE-e----------eeCCCEEEEEeCCEEeeccC----CccEEEecCCcEEEEEeecCCCCCCCeE
Q psy18191        140 SAVVPRHEPTTLNCKA-D----------GYPEPRIEWYKDGSLVSAEI----GSHRILLPAGSLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~-~----------g~P~p~i~W~~~g~~l~~~~----~~~~~~~~~~~l~~~~vi~~v~~~d~G~  204 (238)
                      ...+.+|+.+.|.|.. .          ..+...+.|+|++..+....    ...++...++.|.+..+    ..+|+|.
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa----~~eDSG~   84 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPA----ELQDSGL   84 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeC----ChhhCeE
Confidence            4677899999999985 1          12234799999975554321    12366667788886666    9999999


Q ss_pred             EEEEEEeCCCceeEEEEEEEE
Q psy18191        205 YWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       205 Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      |+|.+.|.-.-.. ..+.|.|
T Consensus        85 Y~C~~rN~t~C~~-~~i~l~V  104 (104)
T cd05896          85 YTCVLRNSTYCMK-VSMSLTV  104 (104)
T ss_pred             EEEEECCCCcceE-EEEEEEC
Confidence            9999999886665 3665554

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.83  E-value=2e-08  Score=79.53  Aligned_cols=85  Identities=18%  Similarity=0.291  Sum_probs=60.1

Q ss_pred             CceEEeCCCcEEEEEEEeeeCC-----------CEEEEEeCCEEeeccCC-c---------cEEEecCCcEEEEEeecCC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPE-----------PRIEWYKDGSLVSAEIG-S---------HRILLPAGSLFFLSLVHGK  197 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~-----------p~i~W~~~g~~l~~~~~-~---------~~~~~~~~~l~~~~vi~~v  197 (238)
                      ..+.+.+|+++.|.|.+.+.|.           +.+.|+|++........ .         ......++.|.    |..+
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~----I~~v  105 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLW----IGNV  105 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEE----ECCC
Confidence            4577889999999999877554           48999998864311100 0         11111234555    5666


Q ss_pred             CCCCCeEEEEEEEeCCCceeEEEEEEEEccC
Q psy18191        198 KDTDSGVYWCVARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~  228 (238)
                      +.+|+|.|+|.|.|..|... ..+.|.|...
T Consensus       106 ~~~DsG~Y~C~a~N~~~~~~-~~i~L~V~~~  135 (227)
T PHA02826        106 INIDEGIYICTISSGNICEE-STIRLTFDSG  135 (227)
T ss_pred             ChHHCEEEEEEEEECCcceE-EEEEEEEecC
Confidence            99999999999999998876 5888888543

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.83  E-value=4.9e-08  Score=64.81  Aligned_cols=76  Identities=28%  Similarity=0.469  Sum_probs=46.5

Q ss_pred             cEEEEEEEee-eCCCEEEEEeCCEEeeccCCccEEEecCCcE-E--EEEeecCCCCCCCeEEEEEEEeCCCcee-EEEEE
Q psy18191        148 PTTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRILLPAGSL-F--FLSLVHGKKDTDSGVYWCVARNELGFAR-SKNAT  222 (238)
Q Consensus       148 ~~~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l-~--~~~vi~~v~~~d~G~Y~C~a~N~~G~~~-s~~~~  222 (238)
                      .+.|.|.+.| .|.|.++|+++|..+... ........++.. .  ....+......|.|.|+|.|.|...... ..+++
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~   79 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGA-TYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVT   79 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCc-eeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence            3689999987 688999999999987642 111122223321 1  1112344456678899999999764432 13445


Q ss_pred             EE
Q psy18191        223 LD  224 (238)
Q Consensus       223 L~  224 (238)
                      |.
T Consensus        80 l~   81 (82)
T cd05759          80 LD   81 (82)
T ss_pred             Ec
Confidence            44

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.82  E-value=3.8e-08  Score=66.72  Aligned_cols=87  Identities=25%  Similarity=0.400  Sum_probs=57.9

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      +|.+...|. ..+..|+.++|.|... .+...+.|+++|......    ..  ......-...|..|+.+|+|.|+|.+.
T Consensus         2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~----~~--~~~~~~~~f~i~~v~~~~~G~Y~C~~~   73 (91)
T cd05751           2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK----KP--PEPQNKAKFFIPSMKREHAGRYRCYYR   73 (91)
T ss_pred             CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc----cc--CCCceeEEEEccCCChhHCEEEEEEEE
Confidence            466666654 5678999999999885 667889999998754321    11  111111112266779999999999999


Q ss_pred             eCC-C-ceeEEEEEEEE
Q psy18191        211 NEL-G-FARSKNATLDV  225 (238)
Q Consensus       211 N~~-G-~~~s~~~~L~V  225 (238)
                      |.. + +..|..+.|.|
T Consensus        74 ~~~~~~S~~Sd~lel~V   90 (91)
T cd05751          74 SGVALWSEPSDPLELVV   90 (91)
T ss_pred             CCCCccCCCCCcEEEEe
Confidence            862 2 33445666665

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.70  E-value=2.7e-07  Score=64.12  Aligned_cols=84  Identities=19%  Similarity=0.218  Sum_probs=54.7

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCE-----Eeecc------------CCccEEEecCCcEEEEEeecCCCCC
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGS-----LVSAE------------IGSHRILLPAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~-----~l~~~------------~~~~~~~~~~~~l~~~~vi~~v~~~  200 (238)
                      +.+..+.+|+++.|.|.....+...+.|+|...     .+...            -.++.....+|+|.+.    .++.+
T Consensus         5 ~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~----~v~~~   80 (105)
T cd05774           5 LVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQ----NVTQK   80 (105)
T ss_pred             ccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEe----cCCcc
Confidence            445667889999999875433444899999621     22110            0123334556777754    45999


Q ss_pred             CCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        201 DSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       201 d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      |+|.|+|.+.|.-+......+.|.|
T Consensus        81 D~G~Y~~~v~~~~~~~~~~~v~l~V  105 (105)
T cd05774          81 DTGFYTLQTITTNFQVEQATVHLQV  105 (105)
T ss_pred             cCEEEEEEEEeCCccEEEEEEEEEC
Confidence            9999999999988544334666654

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.64  E-value=1.1e-06  Score=59.91  Aligned_cols=73  Identities=14%  Similarity=0.191  Sum_probs=49.5

Q ss_pred             CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeecc------CCccEEEec-CCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE------IGSHRILLP-AGSLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~------~~~~~~~~~-~~~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      .++++.+|+++.|.|.+.+.....+.|++-+..+...      .+.+..... ++. .....|+.++.+|+|.|.|.+..
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~-~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSN-ELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCC-EEEEEECcCCcccCEEEEEEEEc
Confidence            5688999999999999988777778888765433210      122222222 222 22233788899999999999876


Q ss_pred             C
Q psy18191        212 E  212 (238)
Q Consensus       212 ~  212 (238)
                      .
T Consensus        84 ~   84 (95)
T cd05881          84 D   84 (95)
T ss_pred             c
Confidence            3

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.59  E-value=1.2e-06  Score=61.07  Aligned_cols=80  Identities=29%  Similarity=0.439  Sum_probs=52.7

Q ss_pred             CCCcEEEEEEEeeeC------CCEEEEEeCC-----E-EeeccCCc---------cEEEe---cCCcEEEEEeecCCCCC
Q psy18191        145 RHEPTTLNCKADGYP------EPRIEWYKDG-----S-LVSAEIGS---------HRILL---PAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       145 ~G~~~~L~C~~~g~P------~p~i~W~~~g-----~-~l~~~~~~---------~~~~~---~~~~l~~~~vi~~v~~~  200 (238)
                      .|++++|.|.....+      .+.+.|++..     . .+......         .+...   ..+...+  .|..++.+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL--~I~~v~~s   78 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASL--VITDLRLE   78 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceE--EECCCCHH
Confidence            489999999987653      4689999862     1 11110011         11111   1122222  37788999


Q ss_pred             CCeEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191        201 DSGVYWCVARNELGFARSKNATLDVAG  227 (238)
Q Consensus       201 d~G~Y~C~a~N~~G~~~s~~~~L~V~~  227 (238)
                      |+|.|.|.+.|..+... +.+.|.|.+
T Consensus        79 D~G~Y~C~v~~~~~~~~-~~v~L~V~~  104 (106)
T cd05714          79 DSGRYRCEVIDGIEDEQ-DTVELEVRG  104 (106)
T ss_pred             HCEEEEEEEEcCCCceE-EEEEEEEEE
Confidence            99999999999888775 699999875

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.55  E-value=1.5e-06  Score=60.47  Aligned_cols=82  Identities=26%  Similarity=0.268  Sum_probs=52.5

Q ss_pred             CCCcEEEEEEEeeeC------CCEEEEEeCCE------E-eeccC--------CccEEEec-CCcEEEEEeecCCCCCCC
Q psy18191        145 RHEPTTLNCKADGYP------EPRIEWYKDGS------L-VSAEI--------GSHRILLP-AGSLFFLSLVHGKKDTDS  202 (238)
Q Consensus       145 ~G~~~~L~C~~~g~P------~p~i~W~~~g~------~-l~~~~--------~~~~~~~~-~~~l~~~~vi~~v~~~d~  202 (238)
                      .|++++|.|.....|      ...|.|+|...      . +....        ...+.... .......+.|..++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            489999999986653      35699998531      1 11100        01122221 101011223777799999


Q ss_pred             eEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191        203 GVYWCVARNELGFARSKNATLDVAG  227 (238)
Q Consensus       203 G~Y~C~a~N~~G~~~s~~~~L~V~~  227 (238)
                      |.|.|.+.+..+... ..+.|.|.+
T Consensus        81 G~Y~C~v~~~~~~~~-~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDES-VVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceE-EEEEEEEEE
Confidence            999999999999886 599999865

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.53  E-value=8.3e-07  Score=62.09  Aligned_cols=75  Identities=23%  Similarity=0.247  Sum_probs=50.3

Q ss_pred             CCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCE---E--eecc------CCccEEE-e-c--CCcEEEEEeecCCCCCC
Q psy18191        137 HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGS---L--VSAE------IGSHRIL-L-P--AGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~---~--l~~~------~~~~~~~-~-~--~~~l~~~~vi~~v~~~d  201 (238)
                      .|..+.+.+|+++.|.|.+.+.+.+.+.|++...   +  +...      ....++. . .  .+...  ..|..++.+|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~--L~I~~~~~~D   81 (109)
T cd04983           4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSS--LHISAAQLSD   81 (109)
T ss_pred             cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEE--EEECCCCHHH
Confidence            4567889999999999999887888999998531   0  0000      0111221 1 1  12222  2378889999


Q ss_pred             CeEEEEEEEeCC
Q psy18191        202 SGVYWCVARNEL  213 (238)
Q Consensus       202 ~G~Y~C~a~N~~  213 (238)
                      +|.|.|.+.+..
T Consensus        82 sG~Y~C~~~~~~   93 (109)
T cd04983          82 SAVYFCALSESG   93 (109)
T ss_pred             CEEEEEEEecCC
Confidence            999999999764

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.53  E-value=6.4e-07  Score=60.60  Aligned_cols=76  Identities=24%  Similarity=0.309  Sum_probs=50.6

Q ss_pred             CCcEEEEEEEeeeCCCEEEEEeCCEEeec--------c--------CCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        146 HEPTTLNCKADGYPEPRIEWYKDGSLVSA--------E--------IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~--------~--------~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      |++++|.|.....+...+.|+++......        .        ..++.....+++|.    |..++.+|+|.|.|..
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~----I~~l~~~DsG~Y~c~v   76 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLL----IQNLTKEDSGTYTLQI   76 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEE----EccCCchhcEEEEEEE
Confidence            78999999987766778999986522110        0        01112223445555    5555999999999999


Q ss_pred             EeCCCceeEEEEEEEE
Q psy18191        210 RNELGFARSKNATLDV  225 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V  225 (238)
                      .+..|......+.|.|
T Consensus        77 ~~~~~~~~~~~~~l~v   92 (92)
T cd05741          77 ISTNGVTENAKFFLRV   92 (92)
T ss_pred             EcCCCcEEEEEEEEEC
Confidence            9988776545666553

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.50  E-value=2e-06  Score=56.68  Aligned_cols=77  Identities=17%  Similarity=0.244  Sum_probs=46.0

Q ss_pred             cEEEEEEEe-eeCCCEEEEEeCCEEeeccCCccEEEecCCcEE-EEEeecCCCCCCCe-EEEEEEEeCCCceeEEEEEEE
Q psy18191        148 PTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF-FLSLVHGKKDTDSG-VYWCVARNELGFARSKNATLD  224 (238)
Q Consensus       148 ~~~L~C~~~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~-~~~vi~~v~~~d~G-~Y~C~a~N~~G~~~s~~~~L~  224 (238)
                      .+.|.|.+. +.|.+.|+|++++..+... .........+... ....+ ..+.+|-| .|+|.|.|..-........|.
T Consensus         1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~-~~~~~~~~~~~t~~S~L~~-~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~   78 (82)
T cd05883           1 EIELNCTAMASKPAATIRWFKGNKELTGK-STVEETWSRMFTVTSQLML-KVTKEDDGVPVICLVDHPAVKDLQTQRYLE   78 (82)
T ss_pred             CEEEEEEecCCCCCCEEEEEECCEECcCc-ccceeccCCCcEEEEEEEE-ECchhhCCCEEEEEEcCcccCCceeeEEEE
Confidence            368999975 5688999999999998742 1101111122111 11112 23555555 899999997633323477777


Q ss_pred             Ec
Q psy18191        225 VA  226 (238)
Q Consensus       225 V~  226 (238)
                      |.
T Consensus        79 V~   80 (82)
T cd05883          79 VQ   80 (82)
T ss_pred             EE
Confidence            75

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.49  E-value=1.3e-06  Score=61.24  Aligned_cols=77  Identities=17%  Similarity=0.248  Sum_probs=49.6

Q ss_pred             eCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCE--Eee---c----------cCCccEEEe-cCCcEEEEEeecCCCC
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGS--LVS---A----------EIGSHRILL-PAGSLFFLSLVHGKKD  199 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~--~l~---~----------~~~~~~~~~-~~~~l~~~~vi~~v~~  199 (238)
                      ..|..+.+.+|++++|.|.+.+ +.+.+.|+|...  .+.   .          .....++.. ..+.....+.|..++.
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~   81 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP   81 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence            3466788999999999999987 778899998531  111   0          000112221 1111122233778899


Q ss_pred             CCCeEEEEEEEeCC
Q psy18191        200 TDSGVYWCVARNEL  213 (238)
Q Consensus       200 ~d~G~Y~C~a~N~~  213 (238)
                      +|+|.|.|.+.+..
T Consensus        82 ~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          82 EDSAVYLCASSLGG   95 (110)
T ss_pred             hhCEEEEEEeeCCC
Confidence            99999999998753

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.48  E-value=1.5e-06  Score=59.58  Aligned_cols=78  Identities=23%  Similarity=0.231  Sum_probs=52.9

Q ss_pred             eCCCcEEEEEEEee-eCCCEEEEEeCCEEeeccCC--------------ccEEEecC--CcEEEEEeecCCCCCCCeEEE
Q psy18191        144 PRHEPTTLNCKADG-YPEPRIEWYKDGSLVSAEIG--------------SHRILLPA--GSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       144 ~~G~~~~L~C~~~g-~P~p~i~W~~~g~~l~~~~~--------------~~~~~~~~--~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      ..|++++|.|.... .....+.|++....+.....              ..+..+..  .+|.    |..++.+|+|.|.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~----I~~~~~~DsG~Y~   77 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQ----ISNLKMEDAGSYR   77 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEE----ECCCchHHCEEEE
Confidence            36999999998744 44567999986533321110              11222322  3343    6777999999999


Q ss_pred             EEEEeCCCceeEEEEEEEE
Q psy18191        207 CVARNELGFARSKNATLDV  225 (238)
Q Consensus       207 C~a~N~~G~~~s~~~~L~V  225 (238)
                      |...+..|......+.|.|
T Consensus        78 c~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          78 AEINTKNGVTITKEFTLHI   96 (97)
T ss_pred             EEEEcCCCCeEEEEEEEEe
Confidence            9999998888666777776

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.46  E-value=7.3e-07  Score=60.69  Aligned_cols=72  Identities=21%  Similarity=0.336  Sum_probs=48.9

Q ss_pred             eCCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeec--CCCCCCCeEEEEEEEeCCCc
Q psy18191        144 PRHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVH--GKKDTDSGVYWCVARNELGF  215 (238)
Q Consensus       144 ~~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~--~v~~~d~G~Y~C~a~N~~G~  215 (238)
                      ..|+.+.|.|.+.|. |. +.++|+++|..+..... .......+++......+.  .....|.+.|+|.+.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            468899999999998 53 68999999998875321 122223456555443322  22334899999999997653

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.42  E-value=5.2e-06  Score=58.78  Aligned_cols=85  Identities=20%  Similarity=0.215  Sum_probs=50.3

Q ss_pred             CceEEeCCCcEEEEEEEeee----CCCEEEEEe---------------CCEEeecc--CCccEEEec----CCcEEEEEe
Q psy18191        139 ASAVVPRHEPTTLNCKADGY----PEPRIEWYK---------------DGSLVSAE--IGSHRILLP----AGSLFFLSL  193 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~----P~p~i~W~~---------------~g~~l~~~--~~~~~~~~~----~~~l~~~~v  193 (238)
                      ..+.+..|+++.|.|.....    +...+.|..               +|......  ....|..+.    .+...+  .
T Consensus         6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI--~   83 (116)
T cd05879           6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSI--V   83 (116)
T ss_pred             ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEE--E
Confidence            45678899999999998653    346899943               22222100  001122211    122222  2


Q ss_pred             ecCCCCCCCeEEEEEEEeCCCce-eEEEEEEEE
Q psy18191        194 VHGKKDTDSGVYWCVARNELGFA-RSKNATLDV  225 (238)
Q Consensus       194 i~~v~~~d~G~Y~C~a~N~~G~~-~s~~~~L~V  225 (238)
                      |.+++.+|.|.|+|...|.-+.. ....+.|.|
T Consensus        84 I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v  116 (116)
T cd05879          84 IHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLYV  116 (116)
T ss_pred             EccCCcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence            67779999999999999976533 113555553

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.42  E-value=5.9e-06  Score=58.07  Aligned_cols=78  Identities=22%  Similarity=0.309  Sum_probs=50.9

Q ss_pred             CCCcEEEEEEEeeeC------------CCEEEEEeCC-----EEeecc--------CCccEEEe-------cCCcEEEEE
Q psy18191        145 RHEPTTLNCKADGYP------------EPRIEWYKDG-----SLVSAE--------IGSHRILL-------PAGSLFFLS  192 (238)
Q Consensus       145 ~G~~~~L~C~~~g~P------------~p~i~W~~~g-----~~l~~~--------~~~~~~~~-------~~~~l~~~~  192 (238)
                      .|++++|.|......            .+.|.|+|..     ..+...        .-..|..+       .+.+|.   
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~---   77 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLE---   77 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEE---
Confidence            489999999986432            4689999842     111111        01113322       123444   


Q ss_pred             eecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191        193 LVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG  227 (238)
Q Consensus       193 vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~  227 (238)
                       |.+++.+|+|.|.|...+.+.... ..+.|.|.+
T Consensus        78 -I~nl~~sDsG~Y~C~V~~g~~~~~-~~v~l~v~g  110 (112)
T cd05900          78 -ITELRSNDSGTYRCEVMHGIEDNY-DTVEVQVKG  110 (112)
T ss_pred             -EeecccccCEEEEEEEecCCCCce-eEEEEEEEe
Confidence             555699999999999998887775 688888865

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.39  E-value=3.3e-06  Score=58.80  Aligned_cols=78  Identities=23%  Similarity=0.383  Sum_probs=49.1

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeC-CCEEEEEeCC-----EEeeccC------CccEEEecCCcEEEEEeecCCCCCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYP-EPRIEWYKDG-----SLVSAEI------GSHRILLPAGSLFFLSLVHGKKDTDS  202 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P-~p~i~W~~~g-----~~l~~~~------~~~~~~~~~~~l~~~~vi~~v~~~d~  202 (238)
                      ...|..+.+.+|+++.|.|.+.+.. ...+.|++..     ..+....      ...++......-...+.|..++.+|+
T Consensus         4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds   83 (106)
T cd04980           4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA   83 (106)
T ss_pred             EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence            3456678899999999999987665 5779999742     1111100      01122211111112234788899999


Q ss_pred             eEEEEEEEeC
Q psy18191        203 GVYWCVARNE  212 (238)
Q Consensus       203 G~Y~C~a~N~  212 (238)
                      |.|.|.+.+.
T Consensus        84 g~Y~Ca~~~~   93 (106)
T cd04980          84 AVYYCQQYGT   93 (106)
T ss_pred             EEEEEEEeCC
Confidence            9999998764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.38  E-value=4.7e-06  Score=55.23  Aligned_cols=66  Identities=15%  Similarity=0.245  Sum_probs=41.4

Q ss_pred             EEEEEEEee-eCCCEEEEEeCCEEeeccCCccEEEe-cCCcEEEEEeec-CCCCCC-CeEEEEEEEeCCCce
Q psy18191        149 TTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRILL-PAGSLFFLSLVH-GKKDTD-SGVYWCVARNELGFA  216 (238)
Q Consensus       149 ~~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~l~~~~vi~-~v~~~d-~G~Y~C~a~N~~G~~  216 (238)
                      +.|.|.+.| .|.+.+.|++++..+...  ...... .++...+...+. .....| .+.|+|.|.|.....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~   71 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGV--KLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS   71 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCc--eeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence            689999865 588999999999988632  111111 233333332221 123344 569999999987553

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.36  E-value=4.7e-06  Score=57.15  Aligned_cols=79  Identities=15%  Similarity=0.168  Sum_probs=48.8

Q ss_pred             eCCCceEEeCCCcEEEEEEEee-eCCCE--EEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCe-EEEEEEEe
Q psy18191        136 EHPASAVVPRHEPTTLNCKADG-YPEPR--IEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSG-VYWCVARN  211 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g-~P~p~--i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G-~Y~C~a~N  211 (238)
                      ..+.+..+.+|+.++|.|.+.| .|.+.  |.||+++..+........ ............+ .+..+|.| .|+|.|.+
T Consensus         6 l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~-~~~~~~~~stlt~-~~~r~D~g~~~sC~A~l   83 (100)
T cd05755           6 LSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDN-TKSPVNAPATITI-TVDREDHGANFSCETEL   83 (100)
T ss_pred             EecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccc-cCCCceeEEEEEE-ecchhhCCcEEEEEEEe
Confidence            3344555689999999999865 67776  799999998864210000 0000101111112 23667766 89999999


Q ss_pred             CCCce
Q psy18191        212 ELGFA  216 (238)
Q Consensus       212 ~~G~~  216 (238)
                      .++..
T Consensus        84 ~l~~~   88 (100)
T cd05755          84 DLRPE   88 (100)
T ss_pred             ccCcc
Confidence            88664

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.34  E-value=5.9e-06  Score=56.27  Aligned_cols=75  Identities=28%  Similarity=0.380  Sum_probs=48.6

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      +|.+...| ...+.+|++++|.|.... +.-.+.|+|+|......   .......+.......|..++.+|+|.|.|...
T Consensus         1 kP~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~---~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           1 KPFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVL---HLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CCEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCce---ecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            35665544 566789999999998754 45679999998653311   00001112222233477889999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.33  E-value=7.2e-06  Score=54.48  Aligned_cols=67  Identities=18%  Similarity=0.276  Sum_probs=42.1

Q ss_pred             EEEEEEEeee-CCCEEEEEeCCEEeeccCCccEEEecC-CcEEEEEeec--CCCCCCCeEEEEEEEeCCCce
Q psy18191        149 TTLNCKADGY-PEPRIEWYKDGSLVSAEIGSHRILLPA-GSLFFLSLVH--GKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       149 ~~L~C~~~g~-P~p~i~W~~~g~~l~~~~~~~~~~~~~-~~l~~~~vi~--~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      +.|.|.+.|. |.+.|+|+++|..+... ........+ ++..+...+.  .....|...|+|.|.+.....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~-~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~   72 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGA-PTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD   72 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCc-ceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence            6799998764 98999999999987642 111122223 3444333222  223445569999999987443

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.30  E-value=1.1e-05  Score=55.21  Aligned_cols=78  Identities=22%  Similarity=0.207  Sum_probs=47.4

Q ss_pred             CcEEEEEEEeeeC---CCEEEEEeCCEE----eec----------cCCccEEEecCCc-EEEEEeecCCCCCCCeEEEEE
Q psy18191        147 EPTTLNCKADGYP---EPRIEWYKDGSL----VSA----------EIGSHRILLPAGS-LFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       147 ~~~~L~C~~~g~P---~p~i~W~~~g~~----l~~----------~~~~~~~~~~~~~-l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      +++.|.|.....+   ...|.|+|....    +..          .....+..+.... -.....|..++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4789999986654   447999985421    100          0001122222110 111223777799999999999


Q ss_pred             EEe-CCCceeEEEEEEEE
Q psy18191        209 ARN-ELGFARSKNATLDV  225 (238)
Q Consensus       209 a~N-~~G~~~s~~~~L~V  225 (238)
                      +.+ ..|... +.+.|.|
T Consensus        81 v~~~~~g~~~-~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQ-KVTTLTV   97 (98)
T ss_pred             EEeCCCCcEE-EEEEEEe
Confidence            875 668876 5888877

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.28  E-value=5.1e-06  Score=57.52  Aligned_cols=73  Identities=25%  Similarity=0.328  Sum_probs=47.4

Q ss_pred             EEeCCCcEEEEEEEeee-CCCEEEEEeCCE-----Eeecc---------CCccEEEe--cCCcEEEEEeecCCCCCCCeE
Q psy18191        142 VVPRHEPTTLNCKADGY-PEPRIEWYKDGS-----LVSAE---------IGSHRILL--PAGSLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       142 ~~~~G~~~~L~C~~~g~-P~p~i~W~~~g~-----~l~~~---------~~~~~~~~--~~~~l~~~~vi~~v~~~d~G~  204 (238)
                      .+.+|+++.|.|.+.+. +...+.|++...     .+...         ....++..  ....-.....|..++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            56789999999999876 677899998432     11100         01112221  111122233478889999999


Q ss_pred             EEEEEEeCCC
Q psy18191        205 YWCVARNELG  214 (238)
Q Consensus       205 Y~C~a~N~~G  214 (238)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999998775

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.27  E-value=1.2e-05  Score=56.42  Aligned_cols=80  Identities=29%  Similarity=0.427  Sum_probs=51.3

Q ss_pred             CCCcEEEEEEEeeeC----------CCEEEEEeC--CEEee---cc--------CCccEEEec-----CCcEEEEEeecC
Q psy18191        145 RHEPTTLNCKADGYP----------EPRIEWYKD--GSLVS---AE--------IGSHRILLP-----AGSLFFLSLVHG  196 (238)
Q Consensus       145 ~G~~~~L~C~~~g~P----------~p~i~W~~~--g~~l~---~~--------~~~~~~~~~-----~~~l~~~~vi~~  196 (238)
                      .|+++.|.|.....+          ...+.|++.  +..+.   ..        .-..|....     .+...  ..|.+
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~as--L~I~~   78 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDAS--LEISR   78 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEE--EEECC
Confidence            388999999986544          256999985  21111   00        011132221     12222  23777


Q ss_pred             CCCCCCeEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191        197 KKDTDSGVYWCVARNELGFARSKNATLDVAG  227 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~  227 (238)
                      ++.+|+|.|.|......+..+ ..+.|.|.+
T Consensus        79 l~~sD~G~Y~C~v~~~~~~~~-~~v~l~V~g  108 (110)
T cd05878          79 LRSSDSGVYRCEVMHGIEDEQ-DTVPLEVTG  108 (110)
T ss_pred             CChhhCEEEEEEEEeCCCcce-EEEEEEEEE
Confidence            899999999999998776666 588998875

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.26  E-value=1.6e-05  Score=54.64  Aligned_cols=31  Identities=23%  Similarity=0.513  Sum_probs=26.6

Q ss_pred             ecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        194 VHGKKDTDSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       194 i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      |..++.+|+|.|.|.+.|.-+..+ ..+.|.|
T Consensus        69 I~~v~~~D~G~Y~C~v~~~~~~~~-~~i~l~v   99 (100)
T cd05713          69 IHNVRASDEGLYTCFFQSDGFYEE-ATVELKV   99 (100)
T ss_pred             EEcCChhhCEEEEEEEecCCcEEE-EEEEEEE
Confidence            677799999999999999888765 5888877

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.22  E-value=2e-05  Score=53.50  Aligned_cols=68  Identities=19%  Similarity=0.378  Sum_probs=42.9

Q ss_pred             CCcEEEEEEEeee-CCC-EEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        146 HEPTTLNCKADGY-PEP-RIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       146 G~~~~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      ++.+.|.|.+.|. |.+ .++|+++|..+..... .......+++......+ .+...+...|+|.+.+..-
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l-~v~~~~~~~ytC~V~H~~~   84 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTL-EVPPEDKARYSCRVEHSGL   84 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEE-EECCCCCCEEEEEEEeCCC
Confidence            7789999999996 443 7999999964332211 12222334554443322 2255678899999987654

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.22  E-value=1.9e-05  Score=55.97  Aligned_cols=87  Identities=15%  Similarity=0.204  Sum_probs=49.2

Q ss_pred             CCceEEeCCCcEEEEEEEeeeC----CCEEEEEeCCE------Eee-ccC-------C---ccEEEecCC--cEEEEEee
Q psy18191        138 PASAVVPRHEPTTLNCKADGYP----EPRIEWYKDGS------LVS-AEI-------G---SHRILLPAG--SLFFLSLV  194 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P----~p~i~W~~~g~------~l~-~~~-------~---~~~~~~~~~--~l~~~~vi  194 (238)
                      |..+.+.+|++++|.|......    ...+.|++...      .+. ...       .   ..|..+...  .-.....|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            4567788999999999875432    25699986321      111 000       0   011111110  00112236


Q ss_pred             cCCCCCCCeEEEEEEEeCCCcee-EEEEEEE
Q psy18191        195 HGKKDTDSGVYWCVARNELGFAR-SKNATLD  224 (238)
Q Consensus       195 ~~v~~~d~G~Y~C~a~N~~G~~~-s~~~~L~  224 (238)
                      ..++.+|+|.|.|.+.|.-+... +..+.|.
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~  115 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPDIVGKPGEIRLR  115 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCCCCCCccEEEEe
Confidence            67799999999999998765432 2245554

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.18  E-value=2.3e-05  Score=54.67  Aligned_cols=89  Identities=19%  Similarity=0.325  Sum_probs=54.4

Q ss_pred             CCCceEEeCCCcEEEEEEEe-eeCCCEEEEEeCCE-----Eee-cc-----------CCccEE-EecCCcEEEEEeecCC
Q psy18191        137 HPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGS-----LVS-AE-----------IGSHRI-LLPAGSLFFLSLVHGK  197 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~-g~P~p~i~W~~~g~-----~l~-~~-----------~~~~~~-~~~~~~l~~~~vi~~v  197 (238)
                      .|..+.+.+|+++.|.|... ......+.|++...     .+. ..           ...+.. ............|.++
T Consensus         7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l   86 (114)
T PF07686_consen    7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL   86 (114)
T ss_dssp             EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred             eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence            35668889999999999988 55667899998321     111 00           001111 1111111122337788


Q ss_pred             CCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        198 KDTDSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      +.+|+|.|.|.....-.......+.|.|
T Consensus        87 ~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   87 QPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             SGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             CcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            9999999999999873333234666655

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.16  E-value=1.2e-05  Score=56.95  Aligned_cols=74  Identities=19%  Similarity=0.400  Sum_probs=47.1

Q ss_pred             CCceEEeCCCcEEEEEEEee--eCCCEEEEEeC--CEEe---e-cc----------CCccEEEe--cCCcEEEEEeecCC
Q psy18191        138 PASAVVPRHEPTTLNCKADG--YPEPRIEWYKD--GSLV---S-AE----------IGSHRILL--PAGSLFFLSLVHGK  197 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g--~P~p~i~W~~~--g~~l---~-~~----------~~~~~~~~--~~~~l~~~~vi~~v  197 (238)
                      |..+.+.+|++++|.|.+.+  .+.+.+.|++.  +..+   . ..          ....++..  ..++....+.|..+
T Consensus         5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~   84 (116)
T cd04982           5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL   84 (116)
T ss_pred             CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence            55678899999999999877  67888999984  2111   0 00          00112221  12112223336777


Q ss_pred             CCCCCeEEEEEEEe
Q psy18191        198 KDTDSGVYWCVARN  211 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N  211 (238)
                      +.+|+|.|.|.+..
T Consensus        85 ~~~Dsg~Y~C~~~~   98 (116)
T cd04982          85 EKEDSATYYCAYWE   98 (116)
T ss_pred             CHHHCEEEEEEEec
Confidence            99999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.16  E-value=2.6e-05  Score=55.16  Aligned_cols=85  Identities=18%  Similarity=0.210  Sum_probs=49.5

Q ss_pred             CCceEEeCCCcEEEEEEEeeeC----CCEEEEEeC----CEE--ee-ccC------C---ccEEEec----CCcEEEEEe
Q psy18191        138 PASAVVPRHEPTTLNCKADGYP----EPRIEWYKD----GSL--VS-AEI------G---SHRILLP----AGSLFFLSL  193 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P----~p~i~W~~~----g~~--l~-~~~------~---~~~~~~~----~~~l~~~~v  193 (238)
                      +..+.+.+|+++.|.|.....+    ...+.|++.    +..  +. ...      .   ..+..+.    .+...  ..
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~s--L~   82 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDAS--IL   82 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceE--EE
Confidence            4567889999999999975433    246999741    211  11 000      0   0121111    11222  23


Q ss_pred             ecCCCCCCCeEEEEEEEeCCCce-eEEEEEEE
Q psy18191        194 VHGKKDTDSGVYWCVARNELGFA-RSKNATLD  224 (238)
Q Consensus       194 i~~v~~~d~G~Y~C~a~N~~G~~-~s~~~~L~  224 (238)
                      |..++.+|+|.|.|.+.|.-+.. ....+.|.
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~  114 (115)
T cd05880          83 IWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLR  114 (115)
T ss_pred             EeeCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence            67779999999999999976642 12355554

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.09  E-value=2.6e-05  Score=53.47  Aligned_cols=70  Identities=19%  Similarity=0.328  Sum_probs=43.4

Q ss_pred             EEeCCCcEEEEEEEeee--CCCEEEEEeCCE--E---eecc------CCccEEEe-cCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        142 VVPRHEPTTLNCKADGY--PEPRIEWYKDGS--L---VSAE------IGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       142 ~~~~G~~~~L~C~~~g~--P~p~i~W~~~g~--~---l~~~------~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      .+.+|+++.|.|...+.  ....+.|++...  .   +...      ....++.. .++. ...+.|..++.+|+|.|.|
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~-~~~L~I~~~~~~Dsg~Y~C   80 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGN-TASLTISGAQTEDEADYYC   80 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCC-EEEEEECCCChhhCEEEEE
Confidence            46789999999998665  456799997421  1   1100      00112221 1222 2223478889999999999


Q ss_pred             EEEeC
Q psy18191        208 VARNE  212 (238)
Q Consensus       208 ~a~N~  212 (238)
                      .+.+.
T Consensus        81 ~~~~~   85 (98)
T cd04984          81 QVWDS   85 (98)
T ss_pred             EEccC
Confidence            98763

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.06  E-value=5.7e-05  Score=51.67  Aligned_cols=80  Identities=19%  Similarity=0.157  Sum_probs=46.2

Q ss_pred             CCcEEEEEEEeeeCC-CEEEEEeCCE----Eee-cc---------CCccEEEe-cCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        146 HEPTTLNCKADGYPE-PRIEWYKDGS----LVS-AE---------IGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       146 G~~~~L~C~~~g~P~-p~i~W~~~g~----~l~-~~---------~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      |++++|.|....... -.+.|+|...    .+. ..         ....+... ..+.......|++++.+|+|.|.|..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            789999998644332 3699998421    111 00         00111111 11111112236777999999999997


Q ss_pred             Ee-CCCceeEEEEEEEEc
Q psy18191        210 RN-ELGFARSKNATLDVA  226 (238)
Q Consensus       210 ~N-~~G~~~s~~~~L~V~  226 (238)
                      .+ +.|... ..+.|.|.
T Consensus        81 ~~~p~g~~~-~~~~L~v~   97 (97)
T cd05846          81 NTFPDGSKS-GTMCLTVY   97 (97)
T ss_pred             EeCCCCCee-eEEEEEEC
Confidence            74 557765 58888873

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.05  E-value=8.8e-05  Score=51.94  Aligned_cols=79  Identities=24%  Similarity=0.325  Sum_probs=49.6

Q ss_pred             CCcEEEEEEEeeeC-------CCEEEEEeC-----CEEee--c-cC--------CccEEEecC-----CcEEEEEeecCC
Q psy18191        146 HEPTTLNCKADGYP-------EPRIEWYKD-----GSLVS--A-EI--------GSHRILLPA-----GSLFFLSLVHGK  197 (238)
Q Consensus       146 G~~~~L~C~~~g~P-------~p~i~W~~~-----g~~l~--~-~~--------~~~~~~~~~-----~~l~~~~vi~~v  197 (238)
                      |+.+.|.|...-.|       .+.|.|.+.     ...+.  . ..        -..|..+..     +...  ..|.++
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~as--L~i~nv   79 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNAS--LVLSRL   79 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEE--EEECCC
Confidence            78899999965322       478999874     11111  0 00        011222211     2222  237788


Q ss_pred             CCCCCeEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191        198 KDTDSGVYWCVARNELGFARSKNATLDVAG  227 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~  227 (238)
                      +.+|+|.|.|.........+ ..+.|.|.+
T Consensus        80 ~~~D~G~Y~C~v~~g~~~~~-~~v~L~V~g  108 (110)
T cd05902          80 RYSDSGTYRCEVVLGINDEQ-DTVPLEVTG  108 (110)
T ss_pred             CHHHCEEEEEEEEECCcccE-EEEEEEEEE
Confidence            99999999999999775565 588998865

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.04  E-value=2.8e-05  Score=52.18  Aligned_cols=71  Identities=27%  Similarity=0.397  Sum_probs=42.4

Q ss_pred             CCcEEEEEEE-eeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeec-CCCCC-CCeEEEEEEEeCCCce
Q psy18191        146 HEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVH-GKKDT-DSGVYWCVARNELGFA  216 (238)
Q Consensus       146 G~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~-~v~~~-d~G~Y~C~a~N~~G~~  216 (238)
                      |+.+.|.|.+ .|.|.|.|+|+.++..+............++.....+.|. .++.. +...++|.|.|..-..
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~   87 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ   87 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence            7899999976 6789999999999987721101111222334333322221 22333 4568999999987543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.03  E-value=6.9e-05  Score=56.55  Aligned_cols=91  Identities=15%  Similarity=0.195  Sum_probs=57.0

Q ss_pred             CceEEeCCCcEEEEEEEe-eeCCCEEEEEeCCEEeeccC---------CccEEEe-cCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        139 ASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEI---------GSHRILL-PAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~-g~P~p~i~W~~~g~~l~~~~---------~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      ..+.+.+|+++.|.|... +...+.+.|+|....+....         -..++.. ..+.......|+.++.+|+|.|.|
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C  102 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC  102 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence            357789999999999974 66678999998643222110         0113322 111111122267779999999999


Q ss_pred             EEEe-CCCceeEEEEEEEEccCC
Q psy18191        208 VARN-ELGFARSKNATLDVAGKI  229 (238)
Q Consensus       208 ~a~N-~~G~~~s~~~~L~V~~~~  229 (238)
                      ...- +.|...+.++.|.|....
T Consensus       103 ~F~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987        103 IFNTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             EEEecCCCCCceeEEEEEEEchh
Confidence            8764 346233468888887654

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.02  E-value=4.2e-05  Score=50.76  Aligned_cols=66  Identities=18%  Similarity=0.245  Sum_probs=39.7

Q ss_pred             EEEEEEEee-eCCCEEEEEeCCEEeeccCCccEEE-ecCCcEEEEEeecC-CC-CCCCeEEEEEEEeCCCc
Q psy18191        149 TTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRIL-LPAGSLFFLSLVHG-KK-DTDSGVYWCVARNELGF  215 (238)
Q Consensus       149 ~~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~-~~~~~l~~~~vi~~-v~-~~d~G~Y~C~a~N~~G~  215 (238)
                      +.|.|.+.| .|...++|+++|..+... ...... ..+++......+.- .+ ..+...|+|.+.+..-.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~-~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDV-KYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCc-eeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            679999976 678899999999987532 111111 12333333222221 13 33455899999987644

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.01  E-value=0.00011  Score=50.55  Aligned_cols=31  Identities=23%  Similarity=0.331  Sum_probs=26.2

Q ss_pred             ecCCCCCCCeEEEEEEEe-CCCceeEEEEEEEE
Q psy18191        194 VHGKKDTDSGVYWCVARN-ELGFARSKNATLDV  225 (238)
Q Consensus       194 i~~v~~~d~G~Y~C~a~N-~~G~~~s~~~~L~V  225 (238)
                      |++++.+|+|.|.|...+ +.|..+ ..+.|.|
T Consensus        68 I~nv~~sD~GtY~C~v~~~p~g~~~-~~~~L~V   99 (100)
T cd05888          68 LRNAVQADEGKYKCRVITFPAGNFE-AELVLTV   99 (100)
T ss_pred             EecCccccceEEEEEEEeCCCCCee-eEEEEEe
Confidence            677799999999999998 667765 5888887

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.99  E-value=0.00018  Score=49.40  Aligned_cols=31  Identities=26%  Similarity=0.353  Sum_probs=26.7

Q ss_pred             ecCCCCCCCeEEEEEEEe-CCCceeEEEEEEEE
Q psy18191        194 VHGKKDTDSGVYWCVARN-ELGFARSKNATLDV  225 (238)
Q Consensus       194 i~~v~~~d~G~Y~C~a~N-~~G~~~s~~~~L~V  225 (238)
                      |++++.+|.|.|+|...| +.|..+ ..+.|.|
T Consensus        67 i~nl~~~D~G~Y~C~v~t~P~g~~~-~~~~L~V   98 (99)
T cd05886          67 LSRLELEDEGVYICEFATFPTGNRE-SQLNLTV   98 (99)
T ss_pred             EcCCccccCEEEEEEEEeCCCCCeE-EEEEEEE
Confidence            667799999999999999 678775 5888887

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.95  E-value=7.1e-05  Score=52.18  Aligned_cols=70  Identities=21%  Similarity=0.384  Sum_probs=42.0

Q ss_pred             EEeCCCcEEEEEEEeeeC-CCEEEEEeCCEE---------eeccCC----------ccEEE--ecCCcEEEEEeecCCCC
Q psy18191        142 VVPRHEPTTLNCKADGYP-EPRIEWYKDGSL---------VSAEIG----------SHRIL--LPAGSLFFLSLVHGKKD  199 (238)
Q Consensus       142 ~~~~G~~~~L~C~~~g~P-~p~i~W~~~g~~---------l~~~~~----------~~~~~--~~~~~l~~~~vi~~v~~  199 (238)
                      .+.+|++++|.|.+.+.. ...+.|++....         +.....          ..+..  .........+.|..++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            578999999999986643 457999974221         100000          11111  11111122234788899


Q ss_pred             CCCeEEEEEEEe
Q psy18191        200 TDSGVYWCVARN  211 (238)
Q Consensus       200 ~d~G~Y~C~a~N  211 (238)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999864

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.89  E-value=0.00022  Score=48.63  Aligned_cols=74  Identities=22%  Similarity=0.320  Sum_probs=46.3

Q ss_pred             CcEEEEEEEeee-CCCEEEEEeCC----EEeecc----------CCccEEEec-----CCcEEEEEeecCCCCCCCeEEE
Q psy18191        147 EPTTLNCKADGY-PEPRIEWYKDG----SLVSAE----------IGSHRILLP-----AGSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       147 ~~~~L~C~~~g~-P~p~i~W~~~g----~~l~~~----------~~~~~~~~~-----~~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      ++++|.|..... ...+++|.|..    ..+...          .-..+..+.     +.+|.    |++++.+|+|.|.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~----i~nv~~~D~G~Y~   76 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIM----LENVGFSDIGVYI   76 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEE----EeCCCccccEEEE
Confidence            368899997532 33579998742    122211          001122221     23343    6677999999999


Q ss_pred             EEEE-eCCCceeEEEEEEEE
Q psy18191        207 CVAR-NELGFARSKNATLDV  225 (238)
Q Consensus       207 C~a~-N~~G~~~s~~~~L~V  225 (238)
                      |... .+.|+.+ .++.|.|
T Consensus        77 C~v~tfP~G~~~-~~~~l~~   95 (96)
T cd05887          77 CKAVTFPLGNTQ-SSTTVTV   95 (96)
T ss_pred             EEEEeCCCCCee-EEEEEEE
Confidence            9964 5778886 5888887

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.88  E-value=0.00024  Score=50.19  Aligned_cols=75  Identities=21%  Similarity=0.300  Sum_probs=47.2

Q ss_pred             eCCCceEEeCCCcEEEEEEEeee-CCCEEEEEeC--CEE---eecc------CCccEEEec---CCcEEEEEeecCCCCC
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGY-PEPRIEWYKD--GSL---VSAE------IGSHRILLP---AGSLFFLSLVHGKKDT  200 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~-P~p~i~W~~~--g~~---l~~~------~~~~~~~~~---~~~l~~~~vi~~v~~~  200 (238)
                      ..|..+.+.+|+++.|.|..... ....+.|++.  +..   +...      ....++...   ... ...+.|..++.+
T Consensus         4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~-~~sL~I~~~~~~   82 (116)
T cd07706           4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQK-SISLTISALQLE   82 (116)
T ss_pred             EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCC-EEEEEECCCCHH
Confidence            34567889999999999997653 4567999983  211   1100      011233221   111 222337888999


Q ss_pred             CCeEEEEEEEe
Q psy18191        201 DSGVYWCVARN  211 (238)
Q Consensus       201 d~G~Y~C~a~N  211 (238)
                      |+|.|.|...+
T Consensus        83 Dsg~Y~C~~~~   93 (116)
T cd07706          83 DSAKYFCALST   93 (116)
T ss_pred             HCEEEEEEEEC
Confidence            99999999985

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.86  E-value=0.00011  Score=50.01  Aligned_cols=66  Identities=18%  Similarity=0.215  Sum_probs=39.6

Q ss_pred             CcEEEEEEE-eeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeec-CCCCCCCe-EEEEEEEeCCCc
Q psy18191        147 EPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVH-GKKDTDSG-VYWCVARNELGF  215 (238)
Q Consensus       147 ~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~-~v~~~d~G-~Y~C~a~N~~G~  215 (238)
                      ....+.|.+ .|.|.+.|+|+++.....   ........+|.....+.+. ....+|.| .|+|.+.|..-.
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~---~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~   84 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTLGGEA---ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ   84 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCCCCcc---eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            456789997 689999999999721110   0111122345444433332 22556666 899999997733

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.86  E-value=0.00037  Score=49.14  Aligned_cols=33  Identities=27%  Similarity=0.548  Sum_probs=28.9

Q ss_pred             ecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191        194 VHGKKDTDSGVYWCVARNELGFARSKNATLDVAG  227 (238)
Q Consensus       194 i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~  227 (238)
                      |..++.+|+|.|.|...+...... ..+.|.|.+
T Consensus        83 i~~v~~sD~G~Y~C~V~~g~~~~~-~~v~L~V~G  115 (117)
T cd05901          83 IVKLRASDAGVYRCEVMHGIEDTQ-DTVSLDVSG  115 (117)
T ss_pred             EcccccccCEEEEEEEEECCcccE-EEEEEEEEE
Confidence            667799999999999999998886 699999875

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.83  E-value=0.00019  Score=49.04  Aligned_cols=73  Identities=18%  Similarity=0.287  Sum_probs=44.3

Q ss_pred             eEEeCCCcEEEEEEEee-eCCCEEEEEeCCE-----Eeec------cCCccEEEe-cCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        141 AVVPRHEPTTLNCKADG-YPEPRIEWYKDGS-----LVSA------EIGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~~g-~P~p~i~W~~~g~-----~l~~------~~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      +.+.+|++++|.|.... .....+.|++...     .+..      ...++.... ......+...|..++.+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            45788999999998754 3556799998531     1110      001112211 111112223378889999999999


Q ss_pred             EEEeCC
Q psy18191        208 VARNEL  213 (238)
Q Consensus       208 ~a~N~~  213 (238)
                      .+.+..
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            887654

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.82  E-value=0.00019  Score=50.35  Aligned_cols=72  Identities=21%  Similarity=0.318  Sum_probs=44.0

Q ss_pred             eEEeCCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccCCccEEEecC-CcEEEEEeec-CCCCCCCe-EEEEEEEeCC
Q psy18191        141 AVVPRHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEIGSHRILLPA-GSLFFLSLVH-GKKDTDSG-VYWCVARNEL  213 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~-~~l~~~~vi~-~v~~~d~G-~Y~C~a~N~~  213 (238)
                      .....|+.++|.|.+.|. |. ..++|++||..+... ........+ ++..+...+. .....|.| .|+|.+....
T Consensus        16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~-~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          16 GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAE-QPNITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccc-ccceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCC
Confidence            344578889999999875 53 479999999998642 111111123 2444333221 12444544 5999999865

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=97.77  E-value=5e-05  Score=50.16  Aligned_cols=45  Identities=11%  Similarity=0.102  Sum_probs=34.9

Q ss_pred             cCCCccEEEeccccccccce----------------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         60 FYPKPICLRFQDLLPQSKQG----------------LMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~g----------------~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      ..|.|.+.|||++.++....                ...|.+.++...|+|.|+|.+.|.+
T Consensus         9 G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~   69 (81)
T cd04971           9 GNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEY   69 (81)
T ss_pred             eeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCC
Confidence            46899999999998664332                1257888999999999998888853

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.75  E-value=0.00031  Score=47.59  Aligned_cols=67  Identities=22%  Similarity=0.431  Sum_probs=44.5

Q ss_pred             eCCCcEEEEEEEeeeCCC--EEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        144 PRHEPTTLNCKADGYPEP--RIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       144 ~~G~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      ..|+...|.|.|.|.-++  .++|++||..+. ... .......+++..+...+ .+...+...|+|.+.-.
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l-~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKST-EFTPTKGDEYACRVRHN   82 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEE-EECCCCCCeEEEEEEEC
Confidence            446777999999996444  579999999876 311 22233446666654433 22566777899999864

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=97.74  E-value=3.7e-05  Score=50.45  Aligned_cols=46  Identities=13%  Similarity=0.073  Sum_probs=35.2

Q ss_pred             ccCCCccEEEeccccccccce--------------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         59 GFYPKPICLRFQDLLPQSKQG--------------LMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        59 ~~~~~~~~~w~~~~~~~~~~g--------------~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      ...|.|++.||+++.++....              ..-|.+..+...|+|.|+|.+.|..
T Consensus         8 ~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~   67 (79)
T cd05855           8 KGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEY   67 (79)
T ss_pred             eEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCC
Confidence            357899999999998664322              1257788899999999998888753

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.72  E-value=0.00011  Score=50.53  Aligned_cols=82  Identities=24%  Similarity=0.391  Sum_probs=48.9

Q ss_pred             CEEEeC-CCceEEeCCCcEEEEEEEeee-C-CCEEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeecCCCC--CCCeEE
Q psy18191        132 PRITEH-PASAVVPRHEPTTLNCKADGY-P-EPRIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVHGKKD--TDSGVY  205 (238)
Q Consensus       132 P~i~~~-~~~~~~~~G~~~~L~C~~~g~-P-~p~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~--~d~G~Y  205 (238)
                      |.+... |.......++.+.|.|.+.|. | .-.+.|++||..+..... .......+|+..+...+.....  .+...|
T Consensus         2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~   81 (100)
T cd07699           2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVY   81 (100)
T ss_pred             CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence            444433 333334467889999999885 4 346899999998853211 1112233666665554432221  235689


Q ss_pred             EEEEEeCC
Q psy18191        206 WCVARNEL  213 (238)
Q Consensus       206 ~C~a~N~~  213 (238)
                      +|.+....
T Consensus        82 sC~V~H~~   89 (100)
T cd07699          82 TCEVTHEG   89 (100)
T ss_pred             EEEEEecC
Confidence            99998754

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=97.69  E-value=2.8e-05  Score=49.34  Aligned_cols=44  Identities=16%  Similarity=0.130  Sum_probs=35.8

Q ss_pred             cCCCccEEEeccccccccc-eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLPQSKQ-GLMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~-g~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..|.|.+.|||++.++... ....|.+.++..+|+|.|+|.+.|.
T Consensus         9 g~P~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~   53 (67)
T cd05863           9 AYPPPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNS   53 (67)
T ss_pred             EeCCCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEEC
Confidence            4678899999999877532 3457889999999999999888764

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd00096 Ig Immunoglobulin domain

Probab=97.68  E-value=0.00011  Score=45.57  Aligned_cols=68  Identities=32%  Similarity=0.453  Sum_probs=42.2

Q ss_pred             EEEEEEEeeeCCCEEEEEeCCEEeeccCCc-cEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGS-HRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~-~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      +.|.|.+.+.+.+.+.|++++......... ...............|..+...|.|.|.|.+.+..+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~   69 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGTV   69 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcCcE
Confidence            368999988788899999988765432100 00000111111222256668899999999998876433

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.67  E-value=0.00054  Score=46.54  Aligned_cols=71  Identities=18%  Similarity=0.372  Sum_probs=46.1

Q ss_pred             eCCCcEEEEEEEeee-CCC-EEEEEeCCEEeeccC-CccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCc
Q psy18191        144 PRHEPTTLNCKADGY-PEP-RIEWYKDGSLVSAEI-GSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGF  215 (238)
Q Consensus       144 ~~G~~~~L~C~~~g~-P~p-~i~W~~~g~~l~~~~-~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~  215 (238)
                      ..|+.+.|.|.+.|. |.. .++|++||..+.... ........+++..+...+.. ...+...|+|.+.-....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~-~~~~~~~ysC~V~H~~l~   85 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET-TPSRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE-cCCCCCEEEEEEEeCCCC
Confidence            357889999999986 443 689999999876431 12222234556665544432 445566899999875533

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.62  E-value=0.00083  Score=44.47  Aligned_cols=64  Identities=20%  Similarity=0.260  Sum_probs=42.8

Q ss_pred             ceEEeCCCcEEEEEEEeeeCC--CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPE--PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      +..+..|++++|.|.....+.  +.++|+--+.....     .......+|.+..+    ...|+|..+|...-.
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-----~~~~~~ktL~~~qv----~~qdSG~WtC~V~~~   73 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-----ILNQDKKTLNLVQL----GPNDSGTWDCIVSVN   73 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-----eccCCccEEEecee----CcccCCEEEEEEEEC
Confidence            345678999999999865444  49999864433221     01122345555544    999999999999744

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=97.61  E-value=5.4e-05  Score=48.49  Aligned_cols=45  Identities=9%  Similarity=0.037  Sum_probs=35.6

Q ss_pred             cCCCccEEEeccccccccce----EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         60 FYPKPICLRFQDLLPQSKQG----LMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~g----~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      ..|.|.+.|||++.++....    ...|.+.++.++|+|.|+|.+.|..
T Consensus         9 G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~   57 (70)
T cd05864           9 GYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPI   57 (70)
T ss_pred             EeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECC
Confidence            46889999999998765432    1357888999999999999888754

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.61  E-value=0.00038  Score=47.35  Aligned_cols=66  Identities=17%  Similarity=0.166  Sum_probs=39.7

Q ss_pred             CcEEEEEEE-eeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecC-CCCCCCe-EEEEEEEeCCCc
Q psy18191        147 EPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHG-KKDTDSG-VYWCVARNELGF  215 (238)
Q Consensus       147 ~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~-v~~~d~G-~Y~C~a~N~~G~  215 (238)
                      ..+.+.|.+ .|.|.+.|+|+++.....   ........+++..+.+.+.. ...+|.| .|+|.+.|..-.
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~---~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~   84 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNA---NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ   84 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCe---eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            357789986 588999999998732111   11112223455444333322 2555655 899999997633

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=97.60  E-value=0.0001  Score=47.87  Aligned_cols=45  Identities=11%  Similarity=0.158  Sum_probs=34.4

Q ss_pred             cCCCccEEEeccccccccc-----------eEEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         60 FYPKPICLRFQDLLPQSKQ-----------GLMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~-----------g~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      ..|.|.+.|+|++.++...           +...|.|.++.++|+|.|+|.+.|..
T Consensus         9 G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   64 (75)
T cd05893           9 GVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEA   64 (75)
T ss_pred             EecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCC
Confidence            4678899999998754321           12358889999999999999888853

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.59  E-value=0.00064  Score=46.18  Aligned_cols=67  Identities=21%  Similarity=0.358  Sum_probs=41.7

Q ss_pred             CCCcEEEEEEEeeeCC--CEEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        145 RHEPTTLNCKADGYPE--PRIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       145 ~G~~~~L~C~~~g~P~--p~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      .++..+|.|.+.|.-+  -.++|++||..+..... .......+++..+...|. +...+...|+|.+.-.
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~-v~~~~~~~ytC~V~H~   83 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLN-FTPEEGDIYSCIVEHW   83 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEE-EECCCCCeEEEEEEeC
Confidence            4566899999999644  35899999998754211 111223355555433332 2445566899998764

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>KOG3515|consensus

Probab=97.58  E-value=0.0012  Score=60.09  Aligned_cols=147  Identities=15%  Similarity=0.099  Sum_probs=82.2

Q ss_pred             ccccCCCcccccCCCccEEEeccccccccce--E-E-EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCccee-cc
Q psy18191         49 ADLTQPPARGGFYPKPICLRFQDLLPQSKQG--L-M-YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLF-PG  123 (238)
Q Consensus        49 ~~~~~pp~~~~~~~~~~~~w~~~~~~~~~~g--~-~-~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~-~~  123 (238)
                      +++.-|-...+.+|.+.++||.........+  + . -+.......+..+.|.|.+.++             ..... ..
T Consensus        23 ~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns-------------~~~~~~~~   89 (741)
T KOG3515|consen   23 EDVPLPCRVNSNPPEIDVEWYHSTSGEHGRYATIADPTLVTTGDVRDTVAELNCRAFNS-------------VGMPSRCP   89 (741)
T ss_pred             CcceeeeecCCCCCCcceEEEecCcccccccccccCCceeeecchhhhhhhhhhhhccc-------------ccCceecc
Confidence            6666676677777788999999876333111  1 0 0011111222334445444432             11111 12


Q ss_pred             eecCCccCCEEEeCCCceEEeCCCcEEEEEEE--eeeCCCEEEEEeCCEEeeccCCc-cEEE--------ecCCcEEEEE
Q psy18191        124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKA--DGYPEPRIEWYKDGSLVSAEIGS-HRIL--------LPAGSLFFLS  192 (238)
Q Consensus       124 ~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~--~g~P~p~i~W~~~g~~l~~~~~~-~~~~--------~~~~~l~~~~  192 (238)
                      ....+..+|.-...........+..+.+.|.+  .+.|.+.+.|..++......... ..+.        .....+.+..
T Consensus        90 ~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v  169 (741)
T KOG3515|consen   90 MILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTV  169 (741)
T ss_pred             eeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEE
Confidence            33446666665544445566778889999954  56788999999887655432110 0000        1122233333


Q ss_pred             eecCCCCCCCeEEEEEEEeC
Q psy18191        193 LVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       193 vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      +    ...+.|.|+|.|.|.
T Consensus       170 ~----Rka~~g~~tC~A~nr  185 (741)
T KOG3515|consen  170 S----RKADNGNYTCPANNR  185 (741)
T ss_pred             E----EecCCceeEcccccc
Confidence            3    788899999999995

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=97.57  E-value=0.00012  Score=47.54  Aligned_cols=50  Identities=8%  Similarity=0.036  Sum_probs=36.3

Q ss_pred             cCCCccEEEeccccccccc--e---------EEEEEcCCCCCCCCCceEEEeCCCcccCCceE
Q psy18191         60 FYPKPICLRFQDLLPQSKQ--G---------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLK  111 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~--g---------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c  111 (238)
                      ..|.|.+.|+|++..+...  .         ...|.|.++..+|+|.|+|.+.|.  .|.-.|
T Consensus         9 G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~--~G~~~~   69 (75)
T cd05892           9 AIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNE--AGVATC   69 (75)
T ss_pred             ecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcC--cCeEEE
Confidence            4688999999998765421  1         125788899999999999888874  454444

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.56  E-value=0.0013  Score=42.55  Aligned_cols=66  Identities=21%  Similarity=0.474  Sum_probs=39.8

Q ss_pred             cEEEEEEEeee-CC-CEEEEEeCCEEeeccCCc-cEEEecCCcEEEEEeec--CCCCCCCeEEEEEEEeCC
Q psy18191        148 PTTLNCKADGY-PE-PRIEWYKDGSLVSAEIGS-HRILLPAGSLFFLSLVH--GKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       148 ~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~-~~~~~~~~~l~~~~vi~--~v~~~d~G~Y~C~a~N~~  213 (238)
                      .+.|.|.+.|. |. ..+.|+++|..+...... ......+|.......|.  .....+...|+|.+....
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            36899999886 54 589999999875432111 11122456655544332  123345569999997653

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.54  E-value=0.00034  Score=48.49  Aligned_cols=70  Identities=14%  Similarity=0.182  Sum_probs=42.0

Q ss_pred             EEeCCCcEEEEEEEeeeCCCEEEEEeCCEE-------eecc-CC-----------ccEEEecCCcEEEEEeecCCCCCCC
Q psy18191        142 VVPRHEPTTLNCKADGYPEPRIEWYKDGSL-------VSAE-IG-----------SHRILLPAGSLFFLSLVHGKKDTDS  202 (238)
Q Consensus       142 ~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~-------l~~~-~~-----------~~~~~~~~~~l~~~~vi~~v~~~d~  202 (238)
                      .+.+|++++|.|.........+.|++....       |... ..           ..++......-...+.|..++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            357899999999986554567999984321       1100 00           1122211111222334788899999


Q ss_pred             eEEEEEEEe
Q psy18191        203 GVYWCVARN  211 (238)
Q Consensus       203 G~Y~C~a~N  211 (238)
                      |.|.|...+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999998753

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.51  E-value=0.00053  Score=46.75  Aligned_cols=69  Identities=9%  Similarity=0.150  Sum_probs=39.9

Q ss_pred             EEeCCCcEEEEEEEeeeCCC--EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCe-EEEEEEEe
Q psy18191        142 VVPRHEPTTLNCKADGYPEP--RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSG-VYWCVARN  211 (238)
Q Consensus       142 ~~~~G~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G-~Y~C~a~N  211 (238)
                      ....+..++|.|.|.|.-++  .++|++||..+............+++..+...|. +...+.| .|+|.+.-
T Consensus        12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~-vt~~~~~~~ysC~V~H   83 (96)
T cd07697          12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLT-VTKDSLGKKFRCIYKH   83 (96)
T ss_pred             HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEE-ECchhCCCeEEEEEEE
Confidence            33446778999999996444  4799999988653211111122233444333332 2443334 59999986

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>KOG3515|consensus

Probab=97.44  E-value=0.00015  Score=65.75  Aligned_cols=91  Identities=20%  Similarity=0.235  Sum_probs=65.1

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .|.....+.+..+..|+++.|.|.+.++|+ +.+.|++.++.+.    .++..+.+..+....+    .....+.|.|.|
T Consensus         7 ~pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~~~c~a   78 (741)
T KOG3515|consen    7 VPVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH----GRYATIADPTLVTTGD----VRDTVAELNCRA   78 (741)
T ss_pred             CccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccc----cccccccCCceeeecc----hhhhhhhhhhhh
Confidence            344444444457899999999999987765 6799999887665    3344455666765554    566678999999


Q ss_pred             EeCCCceeEEEEEEEEccCC
Q psy18191        210 RNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V~~~~  229 (238)
                      .|..|......+.+.|..++
T Consensus        79 ~ns~~~~~~~~~~l~v~~~p   98 (741)
T KOG3515|consen   79 FNSVGMPSRCPMILDVDYPP   98 (741)
T ss_pred             cccccCceecceeeccccCc
Confidence            99988775567777776654

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.41  E-value=0.0016  Score=44.26  Aligned_cols=72  Identities=18%  Similarity=0.258  Sum_probs=42.9

Q ss_pred             CCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccC-CccEEEecCCcEEEEEeecCCC--CCCCeEEEEEEEeCCCce
Q psy18191        145 RHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEI-GSHRILLPAGSLFFLSLVHGKK--DTDSGVYWCVARNELGFA  216 (238)
Q Consensus       145 ~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~-~~~~~~~~~~~l~~~~vi~~v~--~~d~G~Y~C~a~N~~G~~  216 (238)
                      ..+.+.|.|.+.|. |. -.++|+++|..+.... ........+++..+...|....  ..+...|+|.+.......
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~   89 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTF   89 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeee
Confidence            45668999999986 43 4689999998864321 1111223355555444332221  124568999998765443

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.38  E-value=0.00073  Score=46.66  Aligned_cols=71  Identities=21%  Similarity=0.391  Sum_probs=42.5

Q ss_pred             EEeCCCcEEEEEEEeeeCCC--EEEEEeCCEEeeccCC-c-cEEEe--cCCcEEEEEeecCCCC---CCCeEEEEEEEeC
Q psy18191        142 VVPRHEPTTLNCKADGYPEP--RIEWYKDGSLVSAEIG-S-HRILL--PAGSLFFLSLVHGKKD---TDSGVYWCVARNE  212 (238)
Q Consensus       142 ~~~~G~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~~-~-~~~~~--~~~~l~~~~vi~~v~~---~d~G~Y~C~a~N~  212 (238)
                      .+..|+.++|.|.+.|..++  .++|+++|..+..... . .....  .+|+..+...+.. ..   .+...|+|.+.-.
T Consensus        12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v-~~~~w~~~~~ytC~V~H~   90 (102)
T cd05768          12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTV-SAEDWNAGDVFTCVVGHE   90 (102)
T ss_pred             HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEE-cHHHhcCCCcEEEEeEeC
Confidence            33457889999999996544  4799999988753210 0 11111  1366655444322 33   2345799998764


Q ss_pred             C
Q psy18191        213 L  213 (238)
Q Consensus       213 ~  213 (238)
                      .
T Consensus        91 ~   91 (102)
T cd05768          91 A   91 (102)
T ss_pred             C
Confidence            4

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=97.35  E-value=0.00034  Score=45.55  Aligned_cols=44  Identities=25%  Similarity=0.371  Sum_probs=33.3

Q ss_pred             CCCccEEEeccccccccce--------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQG--------LMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g--------~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .|.|.+.|+|++.++....        ..+|.+.++.++|+|.|.|.+.|..
T Consensus        10 ~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   61 (77)
T cd05760          10 HPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAF   61 (77)
T ss_pred             cCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCC
Confidence            5678999999988654321        1367888899999999998887753

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=97.34  E-value=0.00052  Score=44.47  Aligned_cols=44  Identities=11%  Similarity=0.129  Sum_probs=33.4

Q ss_pred             cCCCccEEEeccccccccc-----------eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLPQSKQ-----------GLMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~-----------g~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..|.|.+.|+|++..+...           +...|.+.++..+|+|.|+|.+.|.
T Consensus         9 G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   63 (75)
T cd05744           9 AIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNE   63 (75)
T ss_pred             ecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcC
Confidence            3677899999998755421           1235888899999999999888874

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=97.33  E-value=0.00026  Score=48.81  Aligned_cols=46  Identities=9%  Similarity=0.005  Sum_probs=33.8

Q ss_pred             ccCCCccEEEeccccccccce--------------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         59 GFYPKPICLRFQDLLPQSKQG--------------LMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        59 ~~~~~~~~~w~~~~~~~~~~g--------------~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      ++.|.|.+.|+|++.++....              ...|.+..+.++|+|.|+|.+.|.+
T Consensus        29 g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~   88 (101)
T cd04975          29 AYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSD   88 (101)
T ss_pred             ecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCC
Confidence            336788999999998765321              1346677888888899988887753

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.33  E-value=0.0018  Score=45.87  Aligned_cols=75  Identities=17%  Similarity=0.391  Sum_probs=45.1

Q ss_pred             CCCceEEeCCCcEEEEEEEeeeC--CCEEEEEeCC--E-E--ee-cc----------CCccEEEe--cCCcEEEEEeecC
Q psy18191        137 HPASAVVPRHEPTTLNCKADGYP--EPRIEWYKDG--S-L--VS-AE----------IGSHRILL--PAGSLFFLSLVHG  196 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~g--~-~--l~-~~----------~~~~~~~~--~~~~l~~~~vi~~  196 (238)
                      .|....+.+|++++|.|...+.-  ...+.|++..  . +  |. ..          ....++..  ....-.+.+.|..
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS   82 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence            35678889999999999875433  4569999732  1 1  10 00          00112211  1111112234788


Q ss_pred             CCCCCCeEEEEEEEe
Q psy18191        197 KKDTDSGVYWCVARN  211 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N  211 (238)
                      +..+|+|.|.|-+..
T Consensus        83 ~~~~Dsa~YyCa~~~   97 (117)
T cd04981          83 LTPEDTAVYYCARGL   97 (117)
T ss_pred             CCHHHCEEEEEEEEc
Confidence            899999999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=97.32  E-value=0.00045  Score=44.49  Aligned_cols=45  Identities=18%  Similarity=0.102  Sum_probs=34.7

Q ss_pred             cCCCccEEEeccccccccc---------eEEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         60 FYPKPICLRFQDLLPQSKQ---------GLMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~---------g~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      ..|.|.+.|++++..+...         +...|.+.++.++|+|.|+|.+.|..
T Consensus        10 G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   63 (74)
T cd05748          10 GRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPA   63 (74)
T ss_pred             eeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCC
Confidence            4678899999998755321         13468888999999999999888853

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.31  E-value=0.0037  Score=42.59  Aligned_cols=67  Identities=19%  Similarity=0.243  Sum_probs=39.5

Q ss_pred             CcEEEEEEEee-eCCCEEEEEeCCE----Eeecc----------CCccEEEec-----CCcEEEEEeecCCCCCCCeEEE
Q psy18191        147 EPTTLNCKADG-YPEPRIEWYKDGS----LVSAE----------IGSHRILLP-----AGSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       147 ~~~~L~C~~~g-~P~p~i~W~~~g~----~l~~~----------~~~~~~~~~-----~~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      +.++|.|.... ....+++|.|...    .+...          .-..|..+.     +.+|.    |++++.+|+|.|+
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~----i~nvt~~D~G~Y~   76 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLS----FNNATEEDVGLYC   76 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEE----EcCCCcccCEEEE
Confidence            46789998642 2456788987421    22110          001222222     23333    6777999999999


Q ss_pred             EEEEeC-CCcee
Q psy18191        207 CVARNE-LGFAR  217 (238)
Q Consensus       207 C~a~N~-~G~~~  217 (238)
                      |..... .|..+
T Consensus        77 C~~~t~P~g~~~   88 (96)
T cd05889          77 CSLVTYPQGSWE   88 (96)
T ss_pred             EEEEeCCCCCeE
Confidence            999764 56664

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.30  E-value=0.0025  Score=45.24  Aligned_cols=75  Identities=21%  Similarity=0.216  Sum_probs=43.7

Q ss_pred             CCceEEeCCCcEEEEEEEeeeC------CCEEEEEeCCE-----E-ee-cc-------CCccEEEe--cCCcEEEEEeec
Q psy18191        138 PASAVVPRHEPTTLNCKADGYP------EPRIEWYKDGS-----L-VS-AE-------IGSHRILL--PAGSLFFLSLVH  195 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P------~p~i~W~~~g~-----~-l~-~~-------~~~~~~~~--~~~~l~~~~vi~  195 (238)
                      |..+.+.+|+.++|.|.....+      ...+.|++...     . +. ..       ....+...  ....-...+.|.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~   85 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS   85 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence            5667889999999999864221      24589998531     1 11 00       00112222  111111222377


Q ss_pred             CCCCCCCeEEEEEEEeC
Q psy18191        196 GKKDTDSGVYWCVARNE  212 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~N~  212 (238)
                      .++.+|+|.|.|.....
T Consensus        86 ~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          86 DAQPEDSGKYFFRVELG  102 (119)
T ss_pred             cCChhhCeEEEEEEEcC
Confidence            88999999999987653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=97.29  E-value=0.00028  Score=44.85  Aligned_cols=44  Identities=18%  Similarity=0.191  Sum_probs=33.8

Q ss_pred             CCCccEEEeccccccccce------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQG------LMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g------~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .|.|.+.|++++.++...+      ..+|.+.++..+|+|.|+|.+.|.+
T Consensus        10 ~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   59 (69)
T cd05746          10 DPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTI   59 (69)
T ss_pred             eCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCC
Confidence            5678899999987654322      2368888999999999998888754

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.28  E-value=0.002  Score=45.45  Aligned_cols=85  Identities=20%  Similarity=0.395  Sum_probs=48.4

Q ss_pred             CCEEEeC-CCceEEeCCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccCCcc-EEEec-CCcEEEEEeecCCCCC---C-
Q psy18191        131 VPRITEH-PASAVVPRHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEIGSH-RILLP-AGSLFFLSLVHGKKDT---D-  201 (238)
Q Consensus       131 ~P~i~~~-~~~~~~~~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~-~~~~~-~~~l~~~~vi~~v~~~---d-  201 (238)
                      +|.+... |....+..++.+.|.|.+.|. |. -.++|++||..+....... ..... +++......|.. ...   + 
T Consensus         2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v-~~~~w~~~   80 (115)
T cd05769           2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRV-SATEWFNP   80 (115)
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEE-ChHHhccC
Confidence            3444433 333344456789999999986 44 3789999998876431111 11122 245544433322 332   3 


Q ss_pred             CeEEEEEEEeCCCce
Q psy18191        202 SGVYWCVARNELGFA  216 (238)
Q Consensus       202 ~G~Y~C~a~N~~G~~  216 (238)
                      ...|+|.+.-.....
T Consensus        81 ~~~ytC~V~H~g~~~   95 (115)
T cd05769          81 RNTFTCIVQFYGGTD   95 (115)
T ss_pred             CCeEEEEEEEeCCcc
Confidence            458999998765444

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=97.26  E-value=0.00027  Score=45.28  Aligned_cols=44  Identities=11%  Similarity=0.140  Sum_probs=33.7

Q ss_pred             cCCCccEEEeccccccccce-----EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLPQSKQG-----LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~g-----~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..|.|.+.|+|++.++....     ...|.+.++.++|+|.|+|.+.|.
T Consensus         9 g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~   57 (71)
T cd04976           9 AYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNK   57 (71)
T ss_pred             EeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcC
Confidence            35778999999988664322     235778899999999999888774

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.24  E-value=0.00049  Score=42.84  Aligned_cols=51  Identities=25%  Similarity=0.465  Sum_probs=33.3

Q ss_pred             eCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        144 PRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       144 ~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      ..|.+|+|.|...+.   .+.|.+++..+..+         +..+.+...    . +++|.|.|.+.+
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~---------~~~~~~~~~----~-e~~G~Y~C~~~~   55 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGS---------DEKYLSLNH----F-SSSGYYHCTADN   55 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCCC---------CceEEeecc----C-CCCceEEEEeCC
Confidence            468999999965422   29999998554421         122222222    4 789999999964

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=97.23  E-value=0.0002  Score=46.06  Aligned_cols=44  Identities=16%  Similarity=0.271  Sum_probs=33.3

Q ss_pred             cCCCccEEEeccccccccc-e-----EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLPQSKQ-G-----LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~-g-----~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..|.|++.|+|++.++... .     -..|.+.++..+|+|.|+|.+.+.
T Consensus         9 g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~   58 (72)
T cd07702           9 AFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIK   58 (72)
T ss_pred             EcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEcc
Confidence            4678899999999865432 1     125778899999999999877763

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.22  E-value=0.0018  Score=42.70  Aligned_cols=70  Identities=20%  Similarity=0.303  Sum_probs=45.4

Q ss_pred             CCCcEEEEEEEeee-CCC-EEEEEeCCEEeeccCCccEEE-ecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCc
Q psy18191        145 RHEPTTLNCKADGY-PEP-RIEWYKDGSLVSAEIGSHRIL-LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGF  215 (238)
Q Consensus       145 ~G~~~~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~~~~~~-~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~  215 (238)
                      .++.+.|.|.+.|. |.. .|.|+++|..+.......... ..+|+..+...+.. ...+...|+|.+......
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v-~~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTV-TWNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEE-ETTTTGGEEEEEEETTSS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEe-cCCCCCEEEEEEEECCCC
Confidence            37889999999886 444 599999999876431111122 35666655544322 355556899999876543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=97.18  E-value=0.00094  Score=44.52  Aligned_cols=44  Identities=11%  Similarity=0.032  Sum_probs=35.0

Q ss_pred             cCCCccEEEeccccccccc--e--------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLPQSKQ--G--------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~--g--------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..|.|.+.|++++.++...  .        ...|.+.++.++|+|.|+|.+.|.
T Consensus        21 G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~   74 (86)
T cd05894          21 GEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNP   74 (86)
T ss_pred             ecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeC
Confidence            3678899999998866432  1        257889999999999999988874

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=97.17  E-value=0.0003  Score=48.47  Aligned_cols=44  Identities=14%  Similarity=0.092  Sum_probs=32.5

Q ss_pred             cCCCccEEEeccccccccce---------------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLPQSKQG---------------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~g---------------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..|.|.+.|+|++.++....               ...|.+..+..+|+|.|+|.+.|.
T Consensus        29 g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~   87 (101)
T cd05859          29 AYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNE   87 (101)
T ss_pred             EeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcC
Confidence            46788999999998765332               124677788888888888877774

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.15  E-value=0.0014  Score=44.69  Aligned_cols=72  Identities=13%  Similarity=0.131  Sum_probs=43.2

Q ss_pred             eEEeCCCcEEEEEEEeee--CC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCC--CC-eEEEEEEEeCC
Q psy18191        141 AVVPRHEPTTLNCKADGY--PE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDT--DS-GVYWCVARNEL  213 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~~g~--P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~--d~-G~Y~C~a~N~~  213 (238)
                      ..+..|+.+.|.|.+.|.  |. -.++|++++...............+|+..+...+.. ..+  +. -.|+|.+.-..
T Consensus         9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v-~~~~w~~g~~ysC~V~H~~   86 (96)
T cd07696           9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNV-STDDWISGDTFQCKVTHPD   86 (96)
T ss_pred             HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEe-CHHHccCCCcEEEEEECCC
Confidence            345568999999999998  43 358999987433211111222344666666554322 232  23 37999998754

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.11  E-value=0.0033  Score=42.79  Aligned_cols=71  Identities=24%  Similarity=0.270  Sum_probs=45.1

Q ss_pred             eEEeCCCcEEE-EEEE-eeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCC-CCCCCe-EEEEEEEeCCC
Q psy18191        141 AVVPRHEPTTL-NCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGK-KDTDSG-VYWCVARNELG  214 (238)
Q Consensus       141 ~~~~~G~~~~L-~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v-~~~d~G-~Y~C~a~N~~G  214 (238)
                      ..+.+|+.+.+ .|.+ .|.|.++|+|+.+.....   ........+|+.+....++.. .++|.| .++|.+....-
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~---~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS---ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             eEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc---ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            45678888888 8985 788999999998743221   111122345666555443322 445555 89999998753

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=97.09  E-value=0.00098  Score=45.62  Aligned_cols=45  Identities=7%  Similarity=-0.048  Sum_probs=34.6

Q ss_pred             CCCccEEEeccccccccce---------EEEEEcCCCCCCCCCceEEEeCCCcc
Q psy18191         61 YPKPICLRFQDLLPQSKQG---------LMYLVGSQASPDYPNRFSLCNNKTWQ  105 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g---------~~~l~~~~~~~~~~g~y~~~~~~~~~  105 (238)
                      .|.+++.|+|++.++....         ...|.+.++...|+|.|+|.+.|.+.
T Consensus        27 ~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G   80 (98)
T cd05762          27 TQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG   80 (98)
T ss_pred             cCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence            5678899999998664321         34678889999999999998888533

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.03  E-value=0.0037  Score=42.51  Aligned_cols=67  Identities=15%  Similarity=0.330  Sum_probs=40.1

Q ss_pred             CCCcEEEEEEEeeeCC--CEEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeecCCCCCC---CeEEEEEEEeCC
Q psy18191        145 RHEPTTLNCKADGYPE--PRIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVHGKKDTD---SGVYWCVARNEL  213 (238)
Q Consensus       145 ~G~~~~L~C~~~g~P~--p~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~~d---~G~Y~C~a~N~~  213 (238)
                      .++.+.|.|.+.|.-+  -.++|++||.. ..... .......+|+......|. +...|   ...|+|.+.-..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~-v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLT-VPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEE-EeHHHcCCCCcEEEEEEeCC
Confidence            4667999999999644  35799999987 32100 111222256555443332 24443   457999988654

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=97.02  E-value=0.00088  Score=43.04  Aligned_cols=44  Identities=14%  Similarity=0.088  Sum_probs=32.9

Q ss_pred             CCCccEEEeccccccccce------------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQG------------LMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g------------~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .|.|.+.|++++.++....            ...|.+..+.++|+|.|+|.+.|..
T Consensus        11 ~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   66 (75)
T cd05750          11 YPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENIL   66 (75)
T ss_pred             CCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcC
Confidence            5678999999987554321            2357788899999999998887753

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.02  E-value=0.0012  Score=41.44  Aligned_cols=49  Identities=20%  Similarity=0.375  Sum_probs=32.1

Q ss_pred             CCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        146 HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      .+.+.|.|.+    .-.|.|++ |..+...        ...++.+.    .....-.|.|.|.+.|
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~--------~~~tlnLG----s~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-GKEILEV--------SNTLLDLG----SRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC----CCcEEEec-Ccccccc--------cccEEecc----CcccCCCcceEecCcc
Confidence            4578999976    24599999 6555421        12333333    3366779999999988

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=96.98  E-value=0.00082  Score=43.33  Aligned_cols=45  Identities=9%  Similarity=-0.060  Sum_probs=33.0

Q ss_pred             CCCccEEEeccccccccce-E-----EEEEcCCCCCCCCCceEEEeCCCcc
Q psy18191         61 YPKPICLRFQDLLPQSKQG-L-----MYLVGSQASPDYPNRFSLCNNKTWQ  105 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g-~-----~~l~~~~~~~~~~g~y~~~~~~~~~  105 (238)
                      .|.|++.|+|++..+...+ +     ..|.+.++..+|.|.|+|.+.|...
T Consensus        13 ~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G   63 (73)
T cd05852          13 APKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRG   63 (73)
T ss_pred             eCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCC
Confidence            5678999999887443221 1     3677888999999999988887543

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=96.95  E-value=0.00065  Score=43.78  Aligned_cols=45  Identities=13%  Similarity=-0.009  Sum_probs=33.0

Q ss_pred             cCCCccEEEeccccccccce------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         60 FYPKPICLRFQDLLPQSKQG------LMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~g------~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      ..|.|.+.|++++.++....      ...|.+.++..+|.|.|+|.+.|..
T Consensus        13 g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   63 (74)
T cd05745          13 GYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIV   63 (74)
T ss_pred             EecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCC
Confidence            46788999999987543321      1357788888899999998887753

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>smart00406 IGv Immunoglobulin V-Type

Probab=96.93  E-value=0.0051  Score=39.82  Aligned_cols=61  Identities=20%  Similarity=0.394  Sum_probs=33.9

Q ss_pred             cEEEEEEEeeeCCC--EEEEEeCCE-----Eeecc----------CCccEEEe-cCC-cEEEEEeecCCCCCCCeEEEEE
Q psy18191        148 PTTLNCKADGYPEP--RIEWYKDGS-----LVSAE----------IGSHRILL-PAG-SLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       148 ~~~L~C~~~g~P~p--~i~W~~~g~-----~l~~~----------~~~~~~~~-~~~-~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      ++.|.|.......+  .+.|++...     .+...          ....++.. ... .......|..++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            47899988665543  789987431     11110          01112221 110 1122233788899999999995

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=96.93  E-value=0.0016  Score=43.94  Aligned_cols=44  Identities=9%  Similarity=0.134  Sum_probs=33.3

Q ss_pred             CCCccEEEeccccccccc----------eEEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQ----------GLMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~----------g~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .|.|.+.|++++.++...          +...|.+.++..+|+|.|+|.+.|..
T Consensus        28 ~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   81 (92)
T cd05737          28 DPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKY   81 (92)
T ss_pred             cCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECC
Confidence            567889999998755321          12357888999999999999888743

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=96.92  E-value=0.0013  Score=42.55  Aligned_cols=43  Identities=12%  Similarity=0.054  Sum_probs=32.4

Q ss_pred             CCCccEEEeccccccccce--------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQG--------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g--------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.|.+.|++++.++....        ...|.+.++.++|+|.|+|.+.|.
T Consensus        13 ~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   63 (76)
T cd05867          13 IPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNR   63 (76)
T ss_pred             eCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECC
Confidence            4678999999987553311        135778889999999999888774

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=96.88  E-value=0.0012  Score=42.25  Aligned_cols=45  Identities=11%  Similarity=-0.108  Sum_probs=33.0

Q ss_pred             cCCCccEEEeccccccccce------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         60 FYPKPICLRFQDLLPQSKQG------LMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~g------~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      ..|.|.+.|++++.+.....      ...|.+.++.++|+|.|+|.+.|..
T Consensus         9 G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   59 (71)
T cd05876           9 GLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSE   59 (71)
T ss_pred             EecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCC
Confidence            36788999999876443221      2367788888999999998887753

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=96.87  E-value=0.0013  Score=44.50  Aligned_cols=43  Identities=9%  Similarity=-0.002  Sum_probs=32.7

Q ss_pred             CCccEEEeccccccccceE-----EEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         62 PKPICLRFQDLLPQSKQGL-----MYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~g~-----~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      +.|.+.|||++.++.....     ..|.+.++..+|+|.|+|.+.+..
T Consensus        28 ~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~   75 (92)
T cd05757          28 TLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTH   75 (92)
T ss_pred             CCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecC
Confidence            6789999999986654321     356778899999999998877653

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=96.86  E-value=0.0022  Score=42.61  Aligned_cols=44  Identities=7%  Similarity=-0.115  Sum_probs=30.8

Q ss_pred             CCccEEEeccccccc--cceEE-----------EEEcCCCCCCCCCceEEEeCCCcc
Q psy18191         62 PKPICLRFQDLLPQS--KQGLM-----------YLVGSQASPDYPNRFSLCNNKTWQ  105 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~--~~g~~-----------~l~~~~~~~~~~g~y~~~~~~~~~  105 (238)
                      +.+++.|++++.++.  ..+.+           .|+|.+++..|+|+|+|.+.+...
T Consensus        15 l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~   71 (85)
T cd05853          15 LDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVD   71 (85)
T ss_pred             CCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccC
Confidence            456799999998664  22211           477778888888888877776543

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=96.86  E-value=0.00056  Score=46.52  Aligned_cols=43  Identities=16%  Similarity=0.058  Sum_probs=32.3

Q ss_pred             CCCccEEEeccccccccc--------eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQ--------GLMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~--------g~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ...+.+.|||++.++...        +...|.+.++.++|+|.|+|.+.+.
T Consensus        27 ~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~   77 (95)
T cd05897          27 RTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFT   77 (95)
T ss_pred             CCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEe
Confidence            356799999999866432        2236788899999999999876654

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>KOG1480|consensus

Probab=96.85  E-value=0.00036  Score=62.79  Aligned_cols=86  Identities=26%  Similarity=0.476  Sum_probs=64.3

Q ss_pred             EEeCCCceEEeCCCcEEEEEE-EeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCK-ADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~-~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      +...|....+.++..+.|.|. ..+.|...+.|++++..+..  ....+......+.+    ..+...|.|+|+|.|.|.
T Consensus       132 f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p--d~n~~~~~d~~li~----~~arlsd~~nytc~a~ni  205 (909)
T KOG1480|consen  132 FEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP--DANVIRASDHNLII----SQARLSDSGNYTCEATNI  205 (909)
T ss_pred             hccChhhheecccccccccccCcccchhhhhhccccCCCCCc--cccchhhhcCCccc----cchhhhhcccceeeeehh
Confidence            444566677888999999998 47999999999999987775  23333344566654    444899999999999999


Q ss_pred             CCceeEEEEEEEE
Q psy18191        213 LGFARSKNATLDV  225 (238)
Q Consensus       213 ~G~~~s~~~~L~V  225 (238)
                      ++...+.++.+.|
T Consensus       206 ~~~r~~~~~~v~v  218 (909)
T KOG1480|consen  206 VAKRKSDPATVQV  218 (909)
T ss_pred             hccccccceEEEE
Confidence            9987655554443

>PHA03376 BARF1; Provisional

Probab=96.84  E-value=0.014  Score=44.33  Aligned_cols=72  Identities=19%  Similarity=0.272  Sum_probs=44.3

Q ss_pred             ceEEeCCCcEEEEEEEe---eeCCCEEEEEeCC----EEeeccC----------CccEEEe--cCCcEEEEEeecCCCCC
Q psy18191        140 SAVVPRHEPTTLNCKAD---GYPEPRIEWYKDG----SLVSAEI----------GSHRILL--PAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~---g~P~p~i~W~~~g----~~l~~~~----------~~~~~~~--~~~~l~~~~vi~~v~~~  200 (238)
                      .+.+..|+++.|.|.-.   ..+.-.|+|+|.+    ..+..-.          ...+..+  +.|++.+  +|..++.+
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsL--vI~~l~lS   97 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFL--VVTAANIS   97 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEE--EEEeeeec
Confidence            46678899999999743   2245679999942    2221110          0111111  2344433  36777999


Q ss_pred             CCeEEEEEEEeCC
Q psy18191        201 DSGVYWCVARNEL  213 (238)
Q Consensus       201 d~G~Y~C~a~N~~  213 (238)
                      |.|.|+|..+-..
T Consensus        98 DdGtY~C~fQkge  110 (221)
T PHA03376         98 HDGNYLCRMKLGE  110 (221)
T ss_pred             CCceEEEEEEcCC
Confidence            9999999998654

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=96.84  E-value=0.0021  Score=42.46  Aligned_cols=44  Identities=9%  Similarity=0.145  Sum_probs=32.1

Q ss_pred             CCCccEEEeccccccccce----------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQG----------LMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g----------~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .|.|.+.||+++..+....          ...|.+..+.++|+|.|+|.+.|..
T Consensus        21 ~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~   74 (85)
T cd05857          21 NPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEY   74 (85)
T ss_pred             CCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCC
Confidence            4677899999987554321          1246777888999999998887753

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=96.80  E-value=0.0021  Score=41.02  Aligned_cols=44  Identities=7%  Similarity=-0.097  Sum_probs=30.5

Q ss_pred             CCCccEEEeccccccccce-E-----EEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQG-L-----MYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g-~-----~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .|.|.+.|++++..+.... .     ..+.+.++.++|+|.|+|.+.|..
T Consensus        11 ~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~   60 (71)
T cd05723          11 KPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDV   60 (71)
T ss_pred             eCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCC
Confidence            5788999999987543322 1     134455778888888888877743

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=96.80  E-value=0.0017  Score=41.80  Aligned_cols=43  Identities=19%  Similarity=0.309  Sum_probs=31.2

Q ss_pred             CCCccEEEecccccccc--ce------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSK--QG------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~--~g------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.|.+.||+++.++..  .+      ...|.+.++..+|+|.|+|.+.|.
T Consensus        10 ~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~   60 (74)
T cd05738          10 NPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNS   60 (74)
T ss_pred             ecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECC
Confidence            57889999999875542  11      125677788888999999877764

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=96.77  E-value=0.0024  Score=42.73  Aligned_cols=45  Identities=13%  Similarity=0.071  Sum_probs=33.0

Q ss_pred             cCCCccEEEeccccccccce-E----EEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         60 FYPKPICLRFQDLLPQSKQG-L----MYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~g-~----~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      ..|.|.+.|++++.++.... +    ..|.+.++.++|+|.|+|.+.|..
T Consensus        27 G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   76 (88)
T cd05851          27 GNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIK   76 (88)
T ss_pred             ccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCC
Confidence            35778999999887543321 1    257788889999999998888753

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=96.76  E-value=0.0029  Score=40.88  Aligned_cols=44  Identities=16%  Similarity=0.033  Sum_probs=31.9

Q ss_pred             CCCccEEEeccccccccc-------------eEEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQ-------------GLMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~-------------g~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .|.+.+.||+++.++...             ....|.|..+.+.|+|.|+|.+.+..
T Consensus        11 ~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~   67 (76)
T cd05895          11 YPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKL   67 (76)
T ss_pred             CCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCC
Confidence            456789999998755321             12457788888999999998877743

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=96.76  E-value=0.0025  Score=41.63  Aligned_cols=41  Identities=7%  Similarity=-0.042  Sum_probs=31.0

Q ss_pred             CccEEEeccccccccce-E----EEEEcCCCCCCCCCceEEEeCCC
Q psy18191         63 KPICLRFQDLLPQSKQG-L----MYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        63 ~~~~~w~~~~~~~~~~g-~----~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .+.+.|+|++.++.... .    ..|.|..+.++|+|.|+|.+.+.
T Consensus        22 ~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~   67 (79)
T cd04973          22 VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSP   67 (79)
T ss_pred             CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCC
Confidence            34799999998765432 1    25778899999999999888764

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=96.74  E-value=0.0016  Score=41.36  Aligned_cols=44  Identities=9%  Similarity=-0.034  Sum_probs=32.3

Q ss_pred             CCCccEEEeccccccccce------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQG------LMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g------~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .|.|.+.|++++.++....      ...|.+.++..+|+|.|+|.+.|..
T Consensus        10 ~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   59 (71)
T cd05731          10 LPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSL   59 (71)
T ss_pred             ecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCC
Confidence            5678899999876543321      1367788888999999998887753

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=96.73  E-value=0.0019  Score=40.83  Aligned_cols=43  Identities=12%  Similarity=-0.018  Sum_probs=31.7

Q ss_pred             CCCccEEEeccccccccce-----EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQG-----LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g-----~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.|.+.|++++.......     ...|.+.++.++|+|.|+|.+.|.
T Consensus        10 ~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   57 (69)
T cd05725          10 DPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENM   57 (69)
T ss_pred             CCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcC
Confidence            5677899999875443221     235788889999999999888774

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>PHA03376 BARF1; Provisional

Probab=96.67  E-value=0.0074  Score=45.78  Aligned_cols=70  Identities=19%  Similarity=0.266  Sum_probs=40.0

Q ss_pred             CCcEEEEEEEeeeCCCEEEEEeCCEE-eecc-CCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        146 HEPTTLNCKADGYPEPRIEWYKDGSL-VSAE-IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       146 G~~~~L~C~~~g~P~p~i~W~~~g~~-l~~~-~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      -+..++.|.+.|.|.|.++|+.+... .... ..+......+|+|...--+..-++ -.-..+|...|...+.
T Consensus       139 ~~~~~i~C~sggfP~P~~~Wle~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  210 (221)
T PHA03376        139 FSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKP-WHLPVTCVGKNDKEEA  210 (221)
T ss_pred             CCeeEEEEecCCcCCchheeccccCCCCCCccccCceeecCCCcEEEEEEeecCCC-ccCceEEeccCchhhh
Confidence            56678899999999999999975321 1111 112233344566654322211122 2335789988876555

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=96.65  E-value=0.0028  Score=46.26  Aligned_cols=37  Identities=22%  Similarity=0.275  Sum_probs=31.4

Q ss_pred             ecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCCCC
Q psy18191        194 VHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST  231 (238)
Q Consensus       194 i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~  231 (238)
                      |..++.+|+|.|.|.+.|..|... ..++|.|..+|..
T Consensus         5 i~~v~~~D~G~Y~C~~~~~~~~~~-~~~~l~v~~~P~v   41 (139)
T cd05771           5 LPGLTVHDEGTYICSVSTPPHQAQ-QIIQLSVSEPPRV   41 (139)
T ss_pred             ECCCCHHHCEEEEEEEEccCccee-eEEEEEEecCCce
Confidence            667799999999999999988886 6899999876644

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=96.65  E-value=0.0019  Score=41.90  Aligned_cols=43  Identities=12%  Similarity=0.065  Sum_probs=31.2

Q ss_pred             CCCccEEEeccccccccc---e-----EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQ---G-----LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~---g-----~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.|++.|++++.++...   .     -..+.+..+.+.|+|.|+|.+.|.
T Consensus        13 ~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~   63 (76)
T cd05868          13 NPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNE   63 (76)
T ss_pred             eCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcC
Confidence            578899999998865321   1     124667788888899999887774

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=96.61  E-value=0.0053  Score=41.29  Aligned_cols=45  Identities=7%  Similarity=-0.058  Sum_probs=33.3

Q ss_pred             cCCCccEEEeccccccccce---------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         60 FYPKPICLRFQDLLPQSKQG---------LMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~g---------~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      ..|.|.+.|++++..+....         ...|.+.++..+|+|.|+|.+.|..
T Consensus        29 g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~   82 (92)
T cd05747          29 GEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSE   82 (92)
T ss_pred             ecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCC
Confidence            45678899999987543221         1357788999999999999888753

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>PHA02633 hypothetical protein; Provisional

Probab=96.60  E-value=0.0076  Score=36.95  Aligned_cols=41  Identities=24%  Similarity=0.451  Sum_probs=31.2

Q ss_pred             CCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCCC
Q psy18191        185 AGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       185 ~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      ++.|-++..    ..+|+|.|.|...|.--... .++.|.|....+
T Consensus        17 ~~nLwilpa----~~sDSGiYiC~~rn~t~c~~-~si~l~V~~~~~   57 (63)
T PHA02633         17 CNNMLILNP----TQSDSGIYMCITKNETYSDM-MKFDLCICLRIE   57 (63)
T ss_pred             cccEEEecc----ccccCcEEEEEEcCCCeeEE-EEEEEEEeeccc
Confidence            445554444    89999999999999877776 488899876653

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=96.60  E-value=0.0029  Score=41.20  Aligned_cols=44  Identities=14%  Similarity=0.021  Sum_probs=32.5

Q ss_pred             CCCccEEEeccccccccc---------eEEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQ---------GLMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~---------g~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .|.|.+.|++++..+...         +...|.+.++..+|.|.|+|.+.|.+
T Consensus        13 ~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   65 (78)
T cd05743          13 VPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTR   65 (78)
T ss_pred             ecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecC
Confidence            567899999987644321         13578888999999999998877743

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=96.59  E-value=0.004  Score=41.71  Aligned_cols=45  Identities=11%  Similarity=-0.002  Sum_probs=34.3

Q ss_pred             CCCccEEEeccccccccce---------EEEEEcCCCCCCCCCceEEEeCCCcc
Q psy18191         61 YPKPICLRFQDLLPQSKQG---------LMYLVGSQASPDYPNRFSLCNNKTWQ  105 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g---------~~~l~~~~~~~~~~g~y~~~~~~~~~  105 (238)
                      .|.|.+.|++++..+...+         ...|.+.++...|.|.|+|.+.|.+.
T Consensus        27 ~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G   80 (90)
T cd04972          27 SPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVG   80 (90)
T ss_pred             cCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCC
Confidence            6788999999987443211         24788889999999999998887543

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=96.55  E-value=0.0029  Score=41.91  Aligned_cols=39  Identities=10%  Similarity=-0.000  Sum_probs=25.9

Q ss_pred             cEEEeccccccccc--e-----------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         65 ICLRFQDLLPQSKQ--G-----------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        65 ~~~w~~~~~~~~~~--g-----------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .+.|++++.++...  +           ...|.|.++...|+|.|+|.+.+.
T Consensus        18 ~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   69 (85)
T cd04970          18 TFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTV   69 (85)
T ss_pred             EEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecC
Confidence            67999998754321  1           124677777778888888776663

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=96.55  E-value=0.0036  Score=40.77  Aligned_cols=44  Identities=14%  Similarity=0.164  Sum_probs=32.8

Q ss_pred             CCCccEEEeccccccccc-------eEEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQ-------GLMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~-------g~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .|.|.+.|++++..+...       +...|.+.++.++|+|.|+|.+.+..
T Consensus        21 ~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   71 (82)
T cd05856          21 NPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRA   71 (82)
T ss_pred             eCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCC
Confidence            456789999998754321       12467888999999999998887743

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=96.55  E-value=0.0031  Score=40.57  Aligned_cols=43  Identities=14%  Similarity=0.114  Sum_probs=31.9

Q ss_pred             CCCccEEEeccccccccce--------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQG--------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g--------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.|++.|++++..+....        -..|.+.++..+|+|.|+|.+.|.
T Consensus        13 ~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~   63 (76)
T cd04978          13 IPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNV   63 (76)
T ss_pred             eCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEcc
Confidence            5778999999887543221        135677888889999999887774

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=96.54  E-value=0.0022  Score=42.56  Aligned_cols=40  Identities=15%  Similarity=0.057  Sum_probs=27.1

Q ss_pred             ccEEEeccccccccc---e----------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         64 PICLRFQDLLPQSKQ---G----------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        64 ~~~~w~~~~~~~~~~---g----------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      +.+.|++++.++...   +          ...|.+.+++..|+|.|+|.+.+.
T Consensus        17 ~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~   69 (85)
T cd05854          17 LTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTV   69 (85)
T ss_pred             eEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecC
Confidence            368999998754321   1          125667788888888888777664

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.54  E-value=0.012  Score=39.95  Aligned_cols=69  Identities=23%  Similarity=0.294  Sum_probs=40.0

Q ss_pred             EeCCCcEEEEEEEee-eCC--CEEEEEeCCEEeeccCCccEEE-ec--CCcEEEEEeecCCCCCCCe-EEEEEEEeCCC
Q psy18191        143 VPRHEPTTLNCKADG-YPE--PRIEWYKDGSLVSAEIGSHRIL-LP--AGSLFFLSLVHGKKDTDSG-VYWCVARNELG  214 (238)
Q Consensus       143 ~~~G~~~~L~C~~~g-~P~--p~i~W~~~g~~l~~~~~~~~~~-~~--~~~l~~~~vi~~v~~~d~G-~Y~C~a~N~~G  214 (238)
                      +.+|+.+++.|.+.+ .|.  ..+.|+++...+.......... .+  .....+...   .+.+|.| +|+|.|.=.++
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtft---ptreD~g~~fsC~A~L~l~   87 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFT---PTIEDIGKVLVCRAKLHID   87 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEe---cchhhCCcEEEEEEEEeec
Confidence            478999999999864 454  5699998776655321100000 00  111222211   1578887 89998875443

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=96.53  E-value=0.0032  Score=40.53  Aligned_cols=44  Identities=11%  Similarity=-0.030  Sum_probs=30.1

Q ss_pred             cCCCccEEEeccccc---cccce-------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLP---QSKQG-------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~---~~~~g-------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..|.|.+.|++++..   .....       ...|.+.++.++|+|.|+|.+.|.
T Consensus         9 G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~   62 (75)
T cd05763           9 GHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNT   62 (75)
T ss_pred             cccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcC
Confidence            367889999998752   11111       125677788888999999887764

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=96.50  E-value=0.0028  Score=40.64  Aligned_cols=44  Identities=9%  Similarity=0.000  Sum_probs=32.5

Q ss_pred             CCCccEEEeccccccccce------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQG------LMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g------~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .|.|.+.|++++..+....      ...|.+.++..+|+|.|+|.+.|.+
T Consensus        13 ~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   62 (73)
T cd04969          13 APKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFF   62 (73)
T ss_pred             cCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCC
Confidence            4678899999987543321      1257788889999999998887753

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>KOG4597|consensus

Probab=96.36  E-value=0.0073  Score=51.78  Aligned_cols=88  Identities=19%  Similarity=0.256  Sum_probs=58.7

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCCEEEEEe---CCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEPRIEWYK---DGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~---~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      |....+..+++..+.|-+.|.|.+.|+|.+   |+..+... .........-+.+-.++|-+....|+|+|+|.|.|..|
T Consensus       203 pa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~-~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g  281 (560)
T KOG4597|consen  203 PAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMR-PNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAG  281 (560)
T ss_pred             cchhhcccchhhcccccccCCcCceeeeehhhccccceeec-CccccCCcceeeeeeEEEcchhhcCCCceeeccccccc
Confidence            444566788999999999999999999975   33333321 11111100011122334666799999999999999999


Q ss_pred             ceeEEEEEEEEcc
Q psy18191        215 FARSKNATLDVAG  227 (238)
Q Consensus       215 ~~~s~~~~L~V~~  227 (238)
                      ... ..+.+.+..
T Consensus       282 ~~~-rdv~c~s~~  293 (560)
T KOG4597|consen  282 FLR-RDVPCSSVK  293 (560)
T ss_pred             eee-ccceeeeec
Confidence            986 577777643

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=96.31  E-value=0.0062  Score=40.84  Aligned_cols=24  Identities=13%  Similarity=0.038  Sum_probs=18.9

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcc
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQ  105 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~  105 (238)
                      .|.+.++..+|+|.|+|.+.|.+.
T Consensus        56 ~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd04974          56 VLYLRNVSFDDAGEYTCLAGNSIG   79 (90)
T ss_pred             eEEEeccccccCcEEEEEeecccC
Confidence            566778888999999988888544

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=96.31  E-value=0.0094  Score=38.38  Aligned_cols=45  Identities=9%  Similarity=-0.015  Sum_probs=32.1

Q ss_pred             CCCccEEEeccccccccc---e------EEEEEcCCCCCCCCCceEEEeCCCcc
Q psy18191         61 YPKPICLRFQDLLPQSKQ---G------LMYLVGSQASPDYPNRFSLCNNKTWQ  105 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~---g------~~~l~~~~~~~~~~g~y~~~~~~~~~  105 (238)
                      .|.|.+.|++++..+...   .      ...|.+..+..+|.|.|+|.+.+...
T Consensus        10 ~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G   63 (76)
T cd05736          10 IPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAG   63 (76)
T ss_pred             cCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCC
Confidence            467789999988754321   1      13467778889999999988887543

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=96.29  E-value=0.011  Score=39.51  Aligned_cols=44  Identities=9%  Similarity=-0.108  Sum_probs=32.0

Q ss_pred             CCCccEEEeccccccccc--e------------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQ--G------------LMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~--g------------~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .|.+.+.|++++..+...  .            ...|.|.++..+|.|.|+|.+.|..
T Consensus        13 ~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~   70 (88)
T cd05735          13 EKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSY   70 (88)
T ss_pred             CCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCC
Confidence            356789999988644221  1            1468888899999999998888854

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=96.27  E-value=0.0051  Score=41.56  Aligned_cols=44  Identities=9%  Similarity=0.011  Sum_probs=32.2

Q ss_pred             CCCccEEEeccccccccc--e------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQ--G------LMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~--g------~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .|.|.+.|++++..+...  .      ...|.+.++..+|.|.|+|.+.|..
T Consensus        30 ~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   81 (95)
T cd05730          30 FPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKA   81 (95)
T ss_pred             eCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCC
Confidence            568899999998755432  1      1247778888889999998887753

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=96.26  E-value=0.014  Score=40.02  Aligned_cols=46  Identities=28%  Similarity=0.394  Sum_probs=33.6

Q ss_pred             cEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191        179 HRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA  226 (238)
Q Consensus       179 ~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~  226 (238)
                      .++.+..+.+.+.  |+.++..|+|.|.-..+|..|....+.+.+.|.
T Consensus        62 ~r~~F~~enlaLl--IkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   62 NRFNFTSENLALL--IKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             HHEEEETTTTEEE--ESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             ceEeeeccCceEE--EeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            3444445555544  888899999999999999999997677777764

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=96.19  E-value=0.0041  Score=41.20  Aligned_cols=44  Identities=11%  Similarity=0.134  Sum_probs=32.1

Q ss_pred             CCCccEEEeccccccccce-E----EEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQG-L----MYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g-~----~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .|.|.+.|++++.++...+ +    ..|.+.++..+|+|.|+|.+.|.+
T Consensus        26 ~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~   74 (85)
T cd05728          26 NPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKH   74 (85)
T ss_pred             eCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCC
Confidence            5678899999988654322 1    256667888889999998887753

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=96.13  E-value=0.0085  Score=40.79  Aligned_cols=41  Identities=10%  Similarity=-0.088  Sum_probs=29.8

Q ss_pred             CccEEEec-cccccccce-----------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         63 KPICLRFQ-DLLPQSKQG-----------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        63 ~~~~~w~~-~~~~~~~~g-----------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.+.|++ ++..+...+           ...|.|.++.++|+|.|+|.+.|.
T Consensus        30 ~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   82 (96)
T cd05865          30 DKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNE   82 (96)
T ss_pred             CCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcC
Confidence            46899998 665433211           246788899999999999888874

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=96.11  E-value=0.01  Score=40.38  Aligned_cols=43  Identities=14%  Similarity=0.019  Sum_probs=30.8

Q ss_pred             CCCccEEEeccccccccc-----e---------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQ-----G---------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~-----g---------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.|.+.|++++..+...     +         ...|.+.++..+|+|.|+|.+.|.
T Consensus        29 ~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~   85 (97)
T cd05869          29 DPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNT   85 (97)
T ss_pred             eCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecC
Confidence            467899999977543211     1         236778888889999999888774

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=96.07  E-value=0.011  Score=37.54  Aligned_cols=43  Identities=9%  Similarity=-0.045  Sum_probs=27.7

Q ss_pred             cCCCccEEEeccccccccce-----EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         60 FYPKPICLRFQDLLPQSKQG-----LMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~g-----~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      ..|.|++.|++++.++....     ...|.+.++  .|+|.|+|.+.|.+
T Consensus        12 G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~   59 (69)
T cd05739          12 GAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAISSL   59 (69)
T ss_pred             ecCCCEEEEEECCEECCCccceecCccEEEEecc--ccCeeEEEEEEeCC
Confidence            36788999999987554321     123555554  36788887777743

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=96.07  E-value=0.021  Score=38.56  Aligned_cols=44  Identities=11%  Similarity=0.086  Sum_probs=28.0

Q ss_pred             cCCCccEEEeccccccccc-eEE------EEEcCCC-CCCCCCceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLPQSKQ-GLM------YLVGSQA-SPDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~-g~~------~l~~~~~-~~~~~g~y~~~~~~~  103 (238)
                      ..|.|.+.|++++.++... ...      .|.+.++ .+.|.|.|.|.+.|.
T Consensus        30 G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~   81 (94)
T cd05848          30 GNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNS   81 (94)
T ss_pred             ecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcC
Confidence            3578899999998866432 111      3344454 357778888777664

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=96.00  E-value=0.0065  Score=40.68  Aligned_cols=24  Identities=4%  Similarity=-0.013  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .+|.+.++..+|+|.|+|.+.|..
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~   78 (90)
T cd05858          55 EVLYLRNVTFEDAGEYTCLAGNSI   78 (90)
T ss_pred             eEEEEccCCHHHCEEEEEEEEeCC
Confidence            468888999999999998887753

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=96.00  E-value=0.011  Score=39.89  Aligned_cols=43  Identities=12%  Similarity=0.173  Sum_probs=31.1

Q ss_pred             CCCccEEEeccccccccce----------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQG----------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g----------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.|.+.||+++..+...+          ...|.+.++.++|+|.|+|.+.|.
T Consensus        28 ~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   80 (92)
T cd05891          28 NPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNK   80 (92)
T ss_pred             eCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeC
Confidence            4677899999876432211          135778888899999999888774

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=95.97  E-value=0.085  Score=36.98  Aligned_cols=71  Identities=13%  Similarity=0.176  Sum_probs=41.9

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCC---CEEEEEeCCE-Ee---ec--c-------CCccE-EE--ecCCcEEEEEeecCCC
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPE---PRIEWYKDGS-LV---SA--E-------IGSHR-IL--LPAGSLFFLSLVHGKK  198 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~---p~i~W~~~g~-~l---~~--~-------~~~~~-~~--~~~~~l~~~~vi~~v~  198 (238)
                      +....+..|+.+.|.|++.|.-.   -.+.|+|... .+   ..  .       ..++. ..  .+++++.+  .|..++
T Consensus         5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L--~l~~L~   82 (115)
T cd05721           5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNF--TLQNLR   82 (115)
T ss_pred             cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEE--EEcCCC
Confidence            34566788999999999976543   3588987421 11   00  0       01111 11  12233333  377889


Q ss_pred             CCCCeEEEEEEE
Q psy18191        199 DTDSGVYWCVAR  210 (238)
Q Consensus       199 ~~d~G~Y~C~a~  210 (238)
                      .+|.+.|.|.-+
T Consensus        83 a~DTa~Y~Ca~e   94 (115)
T cd05721          83 ANQTDIYFCKIE   94 (115)
T ss_pred             HHHCeEEEEEee
Confidence            999999999654

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=95.97  E-value=0.0095  Score=39.62  Aligned_cols=43  Identities=7%  Similarity=-0.133  Sum_probs=31.7

Q ss_pred             CCCccEEEeccccccccc-----eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQ-----GLMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~-----g~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.|.+.|++++......     ....|.+.++..+|+|.|+|.+.|.
T Consensus        28 ~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   75 (88)
T cd04968          28 NPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENI   75 (88)
T ss_pred             eCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEEC
Confidence            467789999987633222     1246788899999999999887774

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=95.93  E-value=0.0082  Score=39.56  Aligned_cols=43  Identities=14%  Similarity=0.135  Sum_probs=30.5

Q ss_pred             CCCccEEEeccccccccce--E-----EEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQG--L-----MYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g--~-----~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.|.+.|++++..+....  .     ..|.+..+..+|+|.|+|.+.|.
T Consensus        24 ~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   73 (86)
T cd05724          24 HPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNM   73 (86)
T ss_pred             CCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEec
Confidence            4677899999987544321  1     25777788888888888777663

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=95.92  E-value=0.018  Score=37.24  Aligned_cols=15  Identities=13%  Similarity=0.007  Sum_probs=12.5

Q ss_pred             CCCccEEEecccccc
Q psy18191         61 YPKPICLRFQDLLPQ   75 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~   75 (238)
                      .|.|++.|++++.++
T Consensus        10 ~P~P~v~W~k~g~~l   24 (77)
T cd05733          10 NPPPTFSWTRNGTHF   24 (77)
T ss_pred             cCCCeEEEEECCeEC
Confidence            578899999998755

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=95.90  E-value=0.013  Score=39.49  Aligned_cols=42  Identities=2%  Similarity=-0.170  Sum_probs=30.9

Q ss_pred             CccEEEeccccccccce------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         63 KPICLRFQDLLPQSKQG------LMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        63 ~~~~~w~~~~~~~~~~g------~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .|.+.|++++..+....      -..|.+.++..+|.|.|.|.+.|..
T Consensus        31 ~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   78 (91)
T cd05740          31 ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEV   78 (91)
T ss_pred             CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCC
Confidence            67899999887543221      1357888888999999998887743

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=95.84  E-value=0.016  Score=39.17  Aligned_cols=44  Identities=16%  Similarity=0.052  Sum_probs=29.1

Q ss_pred             cCCCccEEEeccccccccce--E----EEEEcCCCC-CCCCCceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLPQSKQG--L----MYLVGSQAS-PDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~g--~----~~l~~~~~~-~~~~g~y~~~~~~~  103 (238)
                      ..|.|++.|++++.++...+  .    ..|.+.++. ..|+|.|.|.+.|.
T Consensus        30 G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~   80 (93)
T cd05849          30 ANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNI   80 (93)
T ss_pred             cCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeC
Confidence            35788999999987553211  1    245555553 57888888877764

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=95.84  E-value=0.016  Score=39.41  Aligned_cols=44  Identities=14%  Similarity=-0.027  Sum_probs=30.0

Q ss_pred             CCCccEEEecc--cccccc--------------ceEEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         61 YPKPICLRFQD--LLPQSK--------------QGLMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~--~~~~~~--------------~g~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .|.|.+.|++.  +..+..              .+...|.+.++..+|+|.|+|.+.|..
T Consensus        28 ~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   87 (98)
T cd05870          28 EPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRI   87 (98)
T ss_pred             CCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccC
Confidence            56788999994  322210              012367888999999999998887753

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=95.81  E-value=0.019  Score=38.72  Aligned_cols=44  Identities=11%  Similarity=-0.020  Sum_probs=31.2

Q ss_pred             CCCccEEEecccccccc--------------ceEEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSK--------------QGLMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~--------------~g~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .|.|.+.|++++..+..              .+...|.+.++..+|+|.|+|.+.|..
T Consensus        28 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   85 (96)
T cd05732          28 DPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRI   85 (96)
T ss_pred             cCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCC
Confidence            46778999998743321              112467888888999999998887753

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=95.80  E-value=0.0085  Score=39.77  Aligned_cols=42  Identities=12%  Similarity=0.253  Sum_probs=32.5

Q ss_pred             CCccEEEeccccccccc---------eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         62 PKPICLRFQDLLPQSKQ---------GLMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~---------g~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      |.+.+.|++++..+...         +...|.+.++..+|+|.|+|.+.+.
T Consensus        28 p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~   78 (90)
T PF07679_consen   28 PPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNS   78 (90)
T ss_dssp             SSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEET
T ss_pred             CCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEEC
Confidence            67789999998765542         2457888899999999999877764

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.77  E-value=0.04  Score=37.71  Aligned_cols=81  Identities=20%  Similarity=0.328  Sum_probs=47.3

Q ss_pred             CCEEEeC-CCceEEeCCCcEEEEEEEeeeC--C-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCC--CCe-
Q psy18191        131 VPRITEH-PASAVVPRHEPTTLNCKADGYP--E-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDT--DSG-  203 (238)
Q Consensus       131 ~P~i~~~-~~~~~~~~G~~~~L~C~~~g~P--~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~--d~G-  203 (238)
                      +|.+... |.......++.+.|.|.+.|.-  . -.+.|.++|.. ... ........+++..+...+.. ..+  .+| 
T Consensus         3 ~PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~-~t~~~~~~dgTys~~S~L~v-~~~~W~~g~   79 (99)
T cd04986           3 KPSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAV-QTSAESDQCGCYSVSSVLPG-CAEEWNKGE   79 (99)
T ss_pred             CCEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcE-EcCcccCCCCCEEEEEEEEe-CHHHhcCCC
Confidence            3444333 3333344678899999998854  2 46999999875 211 11112234666666655432 332  244 


Q ss_pred             EEEEEEEeCCC
Q psy18191        204 VYWCVARNELG  214 (238)
Q Consensus       204 ~Y~C~a~N~~G  214 (238)
                      .|+|.+.....
T Consensus        80 ~ytC~V~H~~l   90 (99)
T cd04986          80 PFACTVTHPEG   90 (99)
T ss_pred             eEEEEEECCCc
Confidence            69999987654

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=95.65  E-value=0.018  Score=38.96  Aligned_cols=43  Identities=7%  Similarity=-0.078  Sum_probs=30.1

Q ss_pred             CCCccEEEecccccccc-----ceE----EEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSK-----QGL----MYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~-----~g~----~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.+.+.|||++.....     ..+    ..|.+..+.++|+|.|+|...|.
T Consensus        31 ~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~   82 (94)
T cd05756          31 SPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNS   82 (94)
T ss_pred             CCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCC
Confidence            46778999998864221     111    25677888899999999877774

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=95.57  E-value=0.046  Score=39.18  Aligned_cols=74  Identities=15%  Similarity=0.189  Sum_probs=42.2

Q ss_pred             CCcEEEEEEEee-----eCCCEEEEEeCCEEeeccC-CccEEE-----------ecCCc--EEEEEeecCCCCCCCeEEE
Q psy18191        146 HEPTTLNCKADG-----YPEPRIEWYKDGSLVSAEI-GSHRIL-----------LPAGS--LFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       146 G~~~~L~C~~~g-----~P~p~i~W~~~g~~l~~~~-~~~~~~-----------~~~~~--l~~~~vi~~v~~~d~G~Y~  206 (238)
                      .+++.|+|.+..     .+.-.+.|..+|..+-... ......           +..|.  |.+..     ...-.|+|+
T Consensus        27 N~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~-----~~a~~GnYT  101 (130)
T PF08204_consen   27 NDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDK-----SDAVEGNYT  101 (130)
T ss_dssp             -SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEH-----HHHH-EEEE
T ss_pred             CCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcc-----hhccccceE
Confidence            578899998854     2345699999988765321 111111           11122  33221     122289999


Q ss_pred             EEEEeCCCceeEEEEEEEE
Q psy18191        207 CVARNELGFARSKNATLDV  225 (238)
Q Consensus       207 C~a~N~~G~~~s~~~~L~V  225 (238)
                      |.+.+...+.. ..+.|..
T Consensus       102 CeVt~~~~ege-~~i~Lk~  119 (130)
T PF08204_consen  102 CEVTELSREGE-TTIELKY  119 (130)
T ss_dssp             EEEEETTEEEE-EEEEEEE
T ss_pred             EEEEecCCCce-EEEEEEE
Confidence            99999988886 4778776

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=95.53  E-value=0.019  Score=38.82  Aligned_cols=44  Identities=7%  Similarity=-0.138  Sum_probs=28.1

Q ss_pred             cCCCccEEEeccccccccc-e--E----EEEEcCCCC-CCCCCceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLPQSKQ-G--L----MYLVGSQAS-PDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~-g--~----~~l~~~~~~-~~~~g~y~~~~~~~  103 (238)
                      ..|.|++.|++++.++... +  .    ..|.+.++. ..|.|.|.|.+.|.
T Consensus        30 g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~   81 (94)
T cd05850          30 ASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINR   81 (94)
T ss_pred             eCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcC
Confidence            3567899999999865421 1  1    134454443 47788888777764

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=95.51  E-value=0.03  Score=37.75  Aligned_cols=44  Identities=11%  Similarity=0.182  Sum_probs=26.4

Q ss_pred             CCCccEEEeccccccccc----e----------EE--EEEcCCCCCCCCCceEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQ----G----------LM--YLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~----g----------~~--~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .|.|.+.|++++..+...    .          ..  .+....+..+|+|.|+|.+.|..
T Consensus        28 ~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~   87 (100)
T cd07693          28 RPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSL   87 (100)
T ss_pred             CCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccc
Confidence            467789999998755431    1          01  11122335778888887776643

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>PHA03042 CD47-like protein; Provisional

Probab=95.48  E-value=0.092  Score=42.12  Aligned_cols=68  Identities=19%  Similarity=0.340  Sum_probs=42.2

Q ss_pred             CCcEEEEEEEeee-----CCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEE
Q psy18191        146 HEPTTLNCKADGY-----PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKN  220 (238)
Q Consensus       146 G~~~~L~C~~~g~-----P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~  220 (238)
                      .+++.++|.+..-     ..-.+.|..++..+-......     ..++.+. .    ...-.|+|+|.|.+..-+.. +.
T Consensus        31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn-----~aSL~~~-f----~~~l~GNYTCEv~~l~n~gk-~~   99 (286)
T PHA03042         31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTN-----TSSLKFN-F----SKNLSGNYTCEAINKFNKIK-NT   99 (286)
T ss_pred             CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCc-----ceEEEEe-c----cccCCCceeEEEeecccCcc-EE
Confidence            5678899987432     355799999998775431110     0112211 1    44558999999998765554 35


Q ss_pred             EEEE
Q psy18191        221 ATLD  224 (238)
Q Consensus       221 ~~L~  224 (238)
                      +.|+
T Consensus       100 IeLk  103 (286)
T PHA03042        100 IELQ  103 (286)
T ss_pred             EEEE
Confidence            5554

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=95.47  E-value=0.02  Score=38.25  Aligned_cols=43  Identities=7%  Similarity=-0.057  Sum_probs=28.9

Q ss_pred             CCCccEEEeccccccc--------cc-e-----EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQS--------KQ-G-----LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~--------~~-g-----~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.|.+.|++++....        .. .     ...|.|.++..+|+|.|+|.+.|.
T Consensus        13 ~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~   69 (90)
T cd05726          13 NPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNV   69 (90)
T ss_pred             cCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcC
Confidence            4677899999875210        01 1     125777788888888888877764

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=95.31  E-value=0.026  Score=36.62  Aligned_cols=16  Identities=13%  Similarity=-0.141  Sum_probs=13.0

Q ss_pred             cCCCccEEEecccccc
Q psy18191         60 FYPKPICLRFQDLLPQ   75 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~   75 (238)
                      ..|.|++.|++++.++
T Consensus         9 G~P~P~i~W~k~g~~l   24 (77)
T cd05874           9 GKPPPSFSWTRNGTHF   24 (77)
T ss_pred             ccCCCeEEEEECCeEC
Confidence            3578999999998754

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=95.24  E-value=0.052  Score=37.81  Aligned_cols=44  Identities=11%  Similarity=-0.005  Sum_probs=28.4

Q ss_pred             CCCccEEEeccccccccce--E------------EEEEcCCCC-CCCCCceEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQG--L------------MYLVGSQAS-PDYPNRFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g--~------------~~l~~~~~~-~~~~g~y~~~~~~~~  104 (238)
                      .|.+.+.|++++..+...+  .            ..|.+.++. .+|.|.|+|.+.|.+
T Consensus        35 ~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~   93 (109)
T cd05773          35 VPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSL   93 (109)
T ss_pred             cCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCC
Confidence            5678899999987554221  1            235555655 467777887777654

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=95.16  E-value=0.03  Score=36.29  Aligned_cols=43  Identities=14%  Similarity=0.125  Sum_probs=28.6

Q ss_pred             CCCccEEEecccc---c--cccc---------eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLL---P--QSKQ---------GLMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~---~--~~~~---------g~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.|.+.||++..   .  ....         ....|.|.++.++|+|.|+|.+.|.
T Consensus        13 ~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   69 (81)
T cd05765          13 RPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNS   69 (81)
T ss_pred             cCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecC
Confidence            5678899999732   1  1110         1135778888888999998877774

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=95.04  E-value=0.024  Score=37.83  Aligned_cols=41  Identities=12%  Similarity=-0.096  Sum_probs=29.7

Q ss_pred             CCccEEEeccccccccce--E----EEEEcCCCCCCCCCceEEEeCC
Q psy18191         62 PKPICLRFQDLLPQSKQG--L----MYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~g--~----~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      +.+++.|++++.++....  +    ..|.|.++...|+|.|+|.+..
T Consensus        23 ~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e   69 (87)
T cd05873          23 NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVE   69 (87)
T ss_pred             CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEe
Confidence            356899999998765432  1    2466778888899999977655

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=94.89  E-value=0.036  Score=37.05  Aligned_cols=44  Identities=16%  Similarity=0.086  Sum_probs=27.8

Q ss_pred             CCCccEEEecccccccc-ce--E----EEEEcCCCC-CCCCCceEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSK-QG--L----MYLVGSQAS-PDYPNRFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~-~g--~----~~l~~~~~~-~~~~g~y~~~~~~~~  104 (238)
                      .|.|++.|++++.++.. .+  .    ..|.+.++. .+|+|.|+|.+.|..
T Consensus        31 ~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~   82 (91)
T cd04967          31 SPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIV   82 (91)
T ss_pred             cCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCC
Confidence            46779999999876522 11  1    134444444 478888888777643

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=94.83  E-value=0.044  Score=36.85  Aligned_cols=40  Identities=10%  Similarity=-0.114  Sum_probs=28.1

Q ss_pred             ccEEEec-ccccccc-c---------eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         64 PICLRFQ-DLLPQSK-Q---------GLMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        64 ~~~~w~~-~~~~~~~-~---------g~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      +.+.|++ ++..+.. .         ....|.|.++.++|+|.|+|.+.|.
T Consensus        29 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~   79 (92)
T cd04977          29 KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDA   79 (92)
T ss_pred             CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcC
Confidence            3788997 4433222 1         1247888999999999999888774

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=94.82  E-value=0.034  Score=37.49  Aligned_cols=39  Identities=8%  Similarity=-0.109  Sum_probs=27.7

Q ss_pred             cEEEecc-ccccccc--------e-EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         65 ICLRFQD-LLPQSKQ--------G-LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        65 ~~~w~~~-~~~~~~~--------g-~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .+.||++ +..+...        | ...|.|..+..+|+|.|+|.+.|.
T Consensus        30 ~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~   78 (92)
T cd05866          30 SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA   78 (92)
T ss_pred             eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcC
Confidence            7899984 4443321        1 236888899999999999888875

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=94.73  E-value=0.045  Score=36.00  Aligned_cols=43  Identities=5%  Similarity=-0.144  Sum_probs=31.0

Q ss_pred             CCccEEEeccccccccce---EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         62 PKPICLRFQDLLPQSKQG---LMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~g---~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      +.+.+.|++++.......   -..|.+..+.++|+|.|.|.+.+..
T Consensus        30 ~~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~   75 (85)
T cd05754          30 PAYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNML   75 (85)
T ss_pred             CCcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccC
Confidence            567899999886432211   2367888999999999998877643

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=94.60  E-value=0.051  Score=35.21  Aligned_cols=43  Identities=12%  Similarity=0.032  Sum_probs=27.6

Q ss_pred             CCCccEEEeccccccc--------cce------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQS--------KQG------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~--------~~g------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.|.+.|+++.....        ..+      ...|.+.++..+|+|.|.|.+.|.
T Consensus        10 ~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   66 (79)
T cd05734          10 YPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSND   66 (79)
T ss_pred             eCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeC
Confidence            5778999999643110        111      124667777888888888777764

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=94.59  E-value=0.062  Score=34.96  Aligned_cols=37  Identities=3%  Similarity=-0.149  Sum_probs=23.9

Q ss_pred             ccEEEeccccccccceEEEEEcCCCCCCCCCceEEEeCC
Q psy18191         64 PICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        64 ~~~~w~~~~~~~~~~g~~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      ..+.||+++..+...+ ..+.+.++ .+|+|.|+|.+.+
T Consensus        31 ~~~~W~kng~~l~~~~-~~l~i~~~-~~dsG~Y~C~a~~   67 (78)
T cd05752          31 NSTQWYHNGKLLETTT-NSYRIRAA-NNDSGEYRCQTQG   67 (78)
T ss_pred             ccEEEEECCEEeeccC-CeEEEeec-ccCCEEeEEECCC
Confidence            4589999998663322 23445555 7788888866554

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=94.59  E-value=0.085  Score=34.13  Aligned_cols=16  Identities=13%  Similarity=-0.186  Sum_probs=13.0

Q ss_pred             cCCCccEEEecccccc
Q psy18191         60 FYPKPICLRFQDLLPQ   75 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~   75 (238)
                      ..|.|++.|++++.++
T Consensus         9 G~P~P~v~W~k~g~~~   24 (77)
T cd05875           9 GNPVPTFQWTRNGKFF   24 (77)
T ss_pred             ccCCCEEEEEECCEEc
Confidence            4689999999998744

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=94.48  E-value=0.085  Score=34.56  Aligned_cols=46  Identities=11%  Similarity=-0.049  Sum_probs=28.2

Q ss_pred             cccCCCccEEEeccccccccc------e----E-EEEEcCCCCCCCCCceEEEeCCC
Q psy18191         58 GGFYPKPICLRFQDLLPQSKQ------G----L-MYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        58 ~~~~~~~~~~w~~~~~~~~~~------g----~-~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .+..|.+++.||+++.++...      +    . ..|.+.-...+|++.|+|.+.+.
T Consensus         9 ~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~   65 (80)
T cd05885           9 PRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHP   65 (80)
T ss_pred             CCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEECh
Confidence            345788999999999866431      1    1 12444444555666677666553

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=94.27  E-value=0.076  Score=42.45  Aligned_cols=49  Identities=24%  Similarity=0.450  Sum_probs=36.0

Q ss_pred             CCCEEEEEe-CCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191        159 PEPRIEWYK-DGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       159 P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~  213 (238)
                      .-|.+.|.- +|..+..  .+...+.+.|.|.+...    ...++|.|+|...-..
T Consensus        11 iDP~y~W~GP~g~~l~g--n~~~nIT~TG~L~~~~F----~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSG--NSYVNITETGKLMFKNF----QESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCC--CCeEEEccCceEEeecc----ccccCCceEEEEEEEe
Confidence            358899986 4555552  33445567888987776    9999999999988655

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=94.20  E-value=0.081  Score=31.62  Aligned_cols=42  Identities=14%  Similarity=0.106  Sum_probs=28.6

Q ss_pred             CCCccEEEecccccccc-----ceEEEEEcCCCCCCCCCceEEEeCC
Q psy18191         61 YPKPICLRFQDLLPQSK-----QGLMYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~-----~g~~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      .+.+.+.|++++..+..     .....|.+..+...|+|.|+|...+
T Consensus        14 ~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   60 (63)
T smart00408       14 DPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAEN   60 (63)
T ss_pred             CCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEec
Confidence            34567899998764431     1123567778888889999877655

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=94.16  E-value=0.045  Score=34.88  Aligned_cols=43  Identities=14%  Similarity=-0.018  Sum_probs=27.1

Q ss_pred             CCCccEEEec-cccccccce------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQ-DLLPQSKQG------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~-~~~~~~~~g------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.|.+.|++ ++..+....      ...|.+..+..+|.|.|+|.+.|.
T Consensus        13 ~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   62 (74)
T cd05764          13 DPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNA   62 (74)
T ss_pred             cCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECC
Confidence            4677899997 444332221      123555677778888888777774

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=94.02  E-value=0.1  Score=34.18  Aligned_cols=24  Identities=8%  Similarity=-0.013  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      ..|.+.++.+.|+|.|+|.+.+..
T Consensus        49 s~L~I~~v~~~DsG~Y~C~a~n~~   72 (84)
T cd05742          49 STLTIPNATLKDSGTYTCAASSGT   72 (84)
T ss_pred             EEEEECCCChhhCEEEEEEEccCC
Confidence            468889999999999998887743

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=93.91  E-value=0.11  Score=31.83  Aligned_cols=39  Identities=10%  Similarity=0.061  Sum_probs=27.8

Q ss_pred             CCCccEEEeccccccccce---EEE--------EEcCCCCCCCCCceEEE
Q psy18191         61 YPKPICLRFQDLLPQSKQG---LMY--------LVGSQASPDYPNRFSLC   99 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g---~~~--------l~~~~~~~~~~g~y~~~   99 (238)
                      .+...+.|++++.......   ...        |.+..+..+|+|.|+|.
T Consensus        14 ~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   63 (64)
T PF00047_consen   14 PPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCV   63 (64)
T ss_dssp             SSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEE
T ss_pred             CCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEE
Confidence            4566899999887332211   111        88899999999999975

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=93.82  E-value=0.08  Score=35.63  Aligned_cols=16  Identities=19%  Similarity=0.036  Sum_probs=12.7

Q ss_pred             CCCccEEEeccccccc
Q psy18191         61 YPKPICLRFQDLLPQS   76 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~   76 (238)
                      .|.|.+.|+|++..+.
T Consensus        26 ~P~p~i~W~k~g~~l~   41 (95)
T cd05722          26 EPPPKIEWKKDGVLLN   41 (95)
T ss_pred             CCCCEEEEEECCeECc
Confidence            4578999999988654

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=93.32  E-value=0.076  Score=34.94  Aligned_cols=42  Identities=12%  Similarity=-0.026  Sum_probs=30.1

Q ss_pred             CCccEEEeccccccccc-eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         62 PKPICLRFQDLLPQSKQ-GLMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~-g~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      +...+.|||++...... ....+.+..+.++|+|.|+|.+.+.
T Consensus        28 ~~~~~~w~k~g~~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~~   70 (83)
T cd05753          28 PVYKVTYYRDGKAKKYSHSNSNLSIPQATLSDSGSYHCSGIIG   70 (83)
T ss_pred             cceEEEEEECCeEccccCCCceEEECccCHHHCEEEEEEEEeC
Confidence            34578999998744321 2235678888999999999887764

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=93.31  E-value=0.072  Score=35.39  Aligned_cols=41  Identities=12%  Similarity=0.028  Sum_probs=27.6

Q ss_pred             CCccEEEeccccccccce-----E----EEEEcCCCCCCCCCceEEEeCC
Q psy18191         62 PKPICLRFQDLLPQSKQG-----L----MYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~g-----~----~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      +.+.+.|++++......+     +    .-|.+.++.++|+|.|.|.+.+
T Consensus        23 p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~   72 (89)
T cd04979          23 NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVE   72 (89)
T ss_pred             CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEec
Confidence            456899999986443221     1    2356678888888888877655

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=92.99  E-value=0.11  Score=35.38  Aligned_cols=42  Identities=14%  Similarity=0.180  Sum_probs=23.4

Q ss_pred             CCCccEEEecccccc--ccce-E------EEEEcCCCCCCCCCceEEEeCC
Q psy18191         61 YPKPICLRFQDLLPQ--SKQG-L------MYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~--~~~g-~------~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      .|.+.+.|++++.+.  .... .      --|.+.++...|+|.|+|.+.+
T Consensus        31 ~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n   81 (96)
T cd05727          31 YPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSS   81 (96)
T ss_pred             CCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEe
Confidence            567899999997743  1111 0      1233445555555655554444

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=92.96  E-value=0.17  Score=32.74  Aligned_cols=43  Identities=16%  Similarity=0.248  Sum_probs=29.0

Q ss_pred             CCCccEEEeccccccccce----------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQG----------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g----------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .+.+.+.|++++..+....          ..-|.+..+.++|.|.|.|.+.+.
T Consensus        21 ~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~   73 (85)
T cd05729          21 NPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENK   73 (85)
T ss_pred             CCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEEC
Confidence            3566799999887543211          123566778888899998877664

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=92.88  E-value=0.14  Score=33.54  Aligned_cols=42  Identities=19%  Similarity=0.112  Sum_probs=25.1

Q ss_pred             cCCCc-cEEEecccccccc--ce-EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         60 FYPKP-ICLRFQDLLPQSK--QG-LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~-~~~w~~~~~~~~~--~g-~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..|.| .+.|++++.++..  .. ...|.+..+  .|.|.|.|.+.|.
T Consensus        24 G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~   69 (81)
T cd05749          24 GPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNA   69 (81)
T ss_pred             eecCCeEEEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEEec
Confidence            46778 6999999986542  11 123444443  3566777666664

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=92.79  E-value=0.19  Score=34.00  Aligned_cols=22  Identities=5%  Similarity=-0.032  Sum_probs=16.5

Q ss_pred             EEEEcCCCCCCCCCceEEEeCC
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      ..|.|.++..+|+|.|+|....
T Consensus        62 ~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882          62 LIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             EEEEECCCCcccCEEEEEEEEe
Confidence            4677788888888888866554

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=92.75  E-value=0.28  Score=31.92  Aligned_cols=18  Identities=22%  Similarity=0.191  Sum_probs=13.5

Q ss_pred             ccCCCccEEEeccccccc
Q psy18191         59 GFYPKPICLRFQDLLPQS   76 (238)
Q Consensus        59 ~~~~~~~~~w~~~~~~~~   76 (238)
                      ++.|.+.+.|++++.++.
T Consensus        10 g~~P~~~v~W~~~g~~l~   27 (82)
T cd05759          10 GAKPAAEIIWFRDGEVLD   27 (82)
T ss_pred             CccCCCEEEEEECCEEcc
Confidence            345677899999987654

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=92.58  E-value=0.42  Score=32.32  Aligned_cols=43  Identities=16%  Similarity=0.147  Sum_probs=28.0

Q ss_pred             CCCc-cEEEeccccccccc--e-------------EEEEEcCCCCC-CCCCceEEEeCCC
Q psy18191         61 YPKP-ICLRFQDLLPQSKQ--G-------------LMYLVGSQASP-DYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~-~~~w~~~~~~~~~~--g-------------~~~l~~~~~~~-~~~g~y~~~~~~~  103 (238)
                      .|.| .+.|++++..+...  +             ...|.|.++.. +|.|.|+|.+.|.
T Consensus        28 ~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~   87 (98)
T cd05758          28 TPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNS   87 (98)
T ss_pred             cCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcC
Confidence            4666 58999988644321  1             13577777777 4478888777764

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=92.43  E-value=0.27  Score=32.30  Aligned_cols=41  Identities=5%  Similarity=-0.206  Sum_probs=28.0

Q ss_pred             CCccEEEecccc----cccc--------c-eEEEEEcCCCCCCCCCceEEEeCC
Q psy18191         62 PKPICLRFQDLL----PQSK--------Q-GLMYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        62 ~~~~~~w~~~~~----~~~~--------~-g~~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      +.+.+.|++.+.    ....        . ....|.|.++++.|+|.|+|.+.+
T Consensus        14 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n   67 (84)
T cd05861          14 EVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHE   67 (84)
T ss_pred             CccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEE
Confidence            456788887543    1111        1 134788999999999999988765

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>PHA03052 Hypothetical protein; Provisional

Probab=92.30  E-value=0.66  Score=28.96  Aligned_cols=36  Identities=22%  Similarity=0.482  Sum_probs=28.4

Q ss_pred             CCceEEeCCCcEEEEEEEe-eeC--CCEEEEEeCCEEee
Q psy18191        138 PASAVVPRHEPTTLNCKAD-GYP--EPRIEWYKDGSLVS  173 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~-g~P--~p~i~W~~~g~~l~  173 (238)
                      |..+.+..|..+++.|++. |.|  .+.+.|.-|+..+.
T Consensus         4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e   42 (69)
T PHA03052          4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE   42 (69)
T ss_pred             CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence            4567788999999999984 433  46799999998873

>PHA03269 envelope glycoprotein C; Provisional

Probab=92.10  E-value=1.2  Score=38.84  Aligned_cols=84  Identities=20%  Similarity=0.246  Sum_probs=49.4

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC---EEEEEeCCEEeeccCCcc-EEEecCCcEEEEEeecC--CCCCC
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP---RIEWYKDGSLVSAEIGSH-RILLPAGSLFFLSLVHG--KKDTD  201 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p---~i~W~~~g~~l~~~~~~~-~~~~~~~~l~~~~vi~~--v~~~d  201 (238)
                      ...+|.+...  ...+.+|+...-.|.+..+-+|   .+.|+.||.++....-.. .....+|.+...+++..  ....|
T Consensus       326 ~yr~PsVsV~--p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d  403 (566)
T PHA03269        326 SYKRPNITVI--GDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNAD  403 (566)
T ss_pred             EecCCCcccc--CCccccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccC
Confidence            4456665543  3456789999999998776544   499999998887421111 12234565554444321  11122


Q ss_pred             --CeEEEEEEEeCC
Q psy18191        202 --SGVYWCVARNEL  213 (238)
Q Consensus       202 --~G~Y~C~a~N~~  213 (238)
                        --..+|.+.=.-
T Consensus       404 ~~PPsLrCeV~W~R  417 (566)
T PHA03269        404 YPPPAIQCNVLWIR  417 (566)
T ss_pred             CCCCCceEEEEEcc
Confidence              124589887433

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=91.79  E-value=1.5  Score=36.83  Aligned_cols=65  Identities=18%  Similarity=0.202  Sum_probs=38.4

Q ss_pred             cEEEEEEEeeeCCC--EEEEEeC---------C---EEeeccCC----c-----cEEEecC-CcEEEEEeecCCCCCCCe
Q psy18191        148 PTTLNCKADGYPEP--RIEWYKD---------G---SLVSAEIG----S-----HRILLPA-GSLFFLSLVHGKKDTDSG  203 (238)
Q Consensus       148 ~~~L~C~~~g~P~p--~i~W~~~---------g---~~l~~~~~----~-----~~~~~~~-~~l~~~~vi~~v~~~d~G  203 (238)
                      .+.|.|.|.|.-+.  .+.|.++         |   ..+..+.+    .     ......+ |+..+...+ .+...+..
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~pn~DggTfQ~~~~v-~v~~~~~~  294 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKKDNDKNTFSSTPSV-RVPTDMSN  294 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEecccccccccCCccccccccCCCccccccccccceeeCCCCCeeEEEEEE-EeCCCCCC
Confidence            57999999998654  4789999         4   22221100    0     0111224 366665544 34566777


Q ss_pred             EEEEEEEeCC
Q psy18191        204 VYWCVARNEL  213 (238)
Q Consensus       204 ~Y~C~a~N~~  213 (238)
                      .|+|...-.-
T Consensus       295 ~Y~C~V~Hsg  304 (338)
T PHA02865        295 QIVCVVFHST  304 (338)
T ss_pred             CcEEEEEeCC
Confidence            8999997643

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=91.65  E-value=2.7  Score=27.83  Aligned_cols=73  Identities=25%  Similarity=0.295  Sum_probs=45.7

Q ss_pred             cCCEEEeCCCceEE--eCC--CcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEE
Q psy18191        130 RVPRITEHPASAVV--PRH--EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       130 ~~P~i~~~~~~~~~--~~G--~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                      .++.|+.++....+  ..+  +...|.+++.+. .+.+.|+.||..+.....       ...+.   .    .....|.|
T Consensus         9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~-------~~~~~---~----~~~~~G~h   73 (89)
T PF06832_consen    9 SPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQP-------GHQLF---W----QPDRPGEH   73 (89)
T ss_pred             CCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCC-------CCeEE---e----CCCCCeeE
Confidence            46677666544333  222  256666777666 558999999998843211       11221   1    45578999


Q ss_pred             EEEEEeCCCcee
Q psy18191        206 WCVARNELGFAR  217 (238)
Q Consensus       206 ~C~a~N~~G~~~  217 (238)
                      +-.+....|...
T Consensus        74 ~l~vvD~~G~~~   85 (89)
T PF06832_consen   74 TLTVVDAQGRSA   85 (89)
T ss_pred             EEEEEcCCCCEE
Confidence            998888888874

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=90.90  E-value=0.23  Score=33.33  Aligned_cols=42  Identities=5%  Similarity=-0.088  Sum_probs=27.0

Q ss_pred             CCCccEEEecccc--cc----ccc-e----EEEEEcCCCCCCCCCceEEEeCC
Q psy18191         61 YPKPICLRFQDLL--PQ----SKQ-G----LMYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        61 ~~~~~~~w~~~~~--~~----~~~-g----~~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      .|.+.+.||+...  ..    ... .    -..|.|..+.++|+|.|+|.+.+
T Consensus        22 ~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~   74 (91)
T cd05871          22 SPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVE   74 (91)
T ss_pred             CCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEc
Confidence            3567899998321  11    011 1    12477888999999999987764

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=90.58  E-value=0.29  Score=33.71  Aligned_cols=39  Identities=3%  Similarity=-0.063  Sum_probs=25.8

Q ss_pred             cEEEecccccccc------c--eE----EEEEcCCCCCCCCCceEEEeCCC
Q psy18191         65 ICLRFQDLLPQSK------Q--GL----MYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        65 ~~~w~~~~~~~~~------~--g~----~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .+.|||++.+...      .  .+    .+|.+..+.++|+|.|+|...|.
T Consensus        42 ~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~   92 (104)
T cd05896          42 SLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLRNS   92 (104)
T ss_pred             eEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEECCC
Confidence            6899999632111      1  11    25556678889999999877764

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>PHA03270 envelope glycoprotein C; Provisional

Probab=90.53  E-value=2.2  Score=36.82  Aligned_cols=80  Identities=18%  Similarity=0.220  Sum_probs=47.5

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP  161 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p  161 (238)
                      -|.|........|.|+....+.....    .  ..+     .+......+|.+...  ...+.+|+...-.|.+..+-+|
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~----~--~~~-----~VtV~~yr~Psvsv~--~~PvL~Ge~Y~AtC~va~YYPp  249 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPH----R--YGT-----WTRVRMFRRPSLSIR--PHAVLEGEPFGATCVAANYYPG  249 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCce----e--eee-----EEEEEEecCCccccc--CCccccCCCceEEEEeeeecCC
Confidence            36666777777888875422211100    0  000     111112346666553  3456789999999998776544


Q ss_pred             ---EEEEEeCCEEeec
Q psy18191        162 ---RIEWYKDGSLVSA  174 (238)
Q Consensus       162 ---~i~W~~~g~~l~~  174 (238)
                         .+.|+.||.++..
T Consensus       250 ~Sv~lrWf~ng~~V~~  265 (466)
T PHA03270        250 DRAAFRWFEGGDEVFA  265 (466)
T ss_pred             CceEEEEEeCCccccC
Confidence               4999999998853

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=90.35  E-value=0.49  Score=32.06  Aligned_cols=42  Identities=5%  Similarity=-0.160  Sum_probs=22.4

Q ss_pred             CCCccEEEeccccc-cccceE------EEEEcCCCCCCCCC-ceEEEeCC
Q psy18191         61 YPKPICLRFQDLLP-QSKQGL------MYLVGSQASPDYPN-RFSLCNNK  102 (238)
Q Consensus        61 ~~~~~~~w~~~~~~-~~~~g~------~~l~~~~~~~~~~g-~y~~~~~~  102 (238)
                      .|.|++.|+++... +...+-      -.|.+.++...|+| .|.|.+.+
T Consensus        31 ~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~   80 (95)
T cd05845          31 AVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHF   80 (95)
T ss_pred             CCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEc
Confidence            56899999987652 322211      13334455555555 45544443

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=89.77  E-value=3.7  Score=27.41  Aligned_cols=66  Identities=18%  Similarity=0.303  Sum_probs=39.1

Q ss_pred             CCceEEeCCCcEEEEEEEe-----eeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        138 PASAVVPRHEPTTLNCKAD-----GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~-----g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      |....+..|+.++..|...     ......+.|..++..++.   .......++...+.  +........-.|.|.
T Consensus        10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~---~qy~~in~~~SsVT--~~~~~~~~~~L~cC~   80 (89)
T PF06328_consen   10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG---SQYRVINDTVSSVT--LPNLNPTGATLFCCK   80 (89)
T ss_dssp             CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC---GCEEEESTTEEEEE--ESS--SSEEEEEEEE
T ss_pred             cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh---hHcceeCCeEEEEE--EccCCCCCceEEEEE
Confidence            4567788999999999873     235678999999886653   44445556654444  233233333355554

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=89.39  E-value=4.4  Score=26.47  Aligned_cols=27  Identities=33%  Similarity=0.406  Sum_probs=18.7

Q ss_pred             CCCCCeEEEEEE-EeCCCceeEEEEEEEE
Q psy18191        198 KDTDSGVYWCVA-RNELGFARSKNATLDV  225 (238)
Q Consensus       198 ~~~d~G~Y~C~a-~N~~G~~~s~~~~L~V  225 (238)
                      ..+|+|...|.| .|..-...+ ...|.|
T Consensus        51 ~~~d~G~w~C~a~~~~~k~~~s-~~~i~v   78 (80)
T PF05790_consen   51 TTEDSGTWVCTASDNEPKERES-KIEILV   78 (80)
T ss_dssp             TCGGSEEEEEEEEECTTEEEEE-EEEEEE
T ss_pred             CCCCCEEEEEEEcCCceEEEEE-EEEEEc
Confidence            679999999999 555544443 555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=89.10  E-value=0.25  Score=32.77  Aligned_cols=39  Identities=13%  Similarity=0.005  Sum_probs=25.7

Q ss_pred             CccEEEeccccccccce-E----EEEEcCCCCCCCCCceEEEeC
Q psy18191         63 KPICLRFQDLLPQSKQG-L----MYLVGSQASPDYPNRFSLCNN  101 (238)
Q Consensus        63 ~~~~~w~~~~~~~~~~g-~----~~l~~~~~~~~~~g~y~~~~~  101 (238)
                      .+.+.|+.++.++.... +    .-+.+..+.+.|+|.|.|.+.
T Consensus        24 ~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872          24 LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence            55899999988765432 1    123455677788888886644

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=88.66  E-value=1.6  Score=30.15  Aligned_cols=55  Identities=11%  Similarity=0.167  Sum_probs=30.1

Q ss_pred             CccEEEeccccccccceE-EEEEcC---CCCCCCCCceEEEeCCCcc--------cCCceEEeCCCC
Q psy18191         63 KPICLRFQDLLPQSKQGL-MYLVGS---QASPDYPNRFSLCNNKTWQ--------KGLPLKKYHPPS  117 (238)
Q Consensus        63 ~~~~~w~~~~~~~~~~g~-~~l~~~---~~~~~~~g~y~~~~~~~~~--------~G~y~c~~~~~~  117 (238)
                      ...+.|||....-....+ .+....   ...+.++|++.+..++++.        .|.|.|.+....
T Consensus        27 ~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v~~~~   93 (105)
T cd05774          27 LLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQTITTN   93 (105)
T ss_pred             ceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEEEEeCC
Confidence            347899996442222222 222221   3334567777777666553        788888655443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=87.80  E-value=0.97  Score=30.44  Aligned_cols=22  Identities=9%  Similarity=-0.004  Sum_probs=15.6

Q ss_pred             EEEEcCCCCCCCCCceEEEeCC
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      ..|.|.++.++|+|.|+|....
T Consensus        62 ~sL~I~~v~~~DsG~Y~C~~~t   83 (95)
T cd07701          62 LSISISDVSLSDEGQYTCSLFT   83 (95)
T ss_pred             EEEEECcCCcccCEEEEEEeEe
Confidence            3567778888888888865543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>PHA03273 envelope glycoprotein C; Provisional

Probab=87.27  E-value=7.9  Score=33.80  Aligned_cols=43  Identities=21%  Similarity=0.410  Sum_probs=32.7

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC---EEEEEeCCEEee
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEP---RIEWYKDGSLVS  173 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p---~i~W~~~g~~l~  173 (238)
                      ..+|.+...  ...+.+|+...-.|.+...-+|   .+.|+.||.++.
T Consensus       235 yr~Psvsv~--~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~  280 (486)
T PHA03273        235 YNAPLVDLS--VHPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVD  280 (486)
T ss_pred             ecCCccccc--CCccccCCCceEEEEeeeecCCCceEEEEEeCCeecc
Confidence            356666553  3456789999999998776544   499999999887

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=87.15  E-value=1.7  Score=28.55  Aligned_cols=45  Identities=7%  Similarity=-0.064  Sum_probs=26.3

Q ss_pred             cccCCCccEEEeccccccccc---------e--E-EEEEcCCCCCCCCC-ceEEEeCCC
Q psy18191         58 GGFYPKPICLRFQDLLPQSKQ---------G--L-MYLVGSQASPDYPN-RFSLCNNKT  103 (238)
Q Consensus        58 ~~~~~~~~~~w~~~~~~~~~~---------g--~-~~l~~~~~~~~~~g-~y~~~~~~~  103 (238)
                      .+..|.+.+.||+++.++...         +  . ..|.+ .+..+|.| .|+|.+.+.
T Consensus         9 ~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~-~p~~eDdG~~~~C~a~~~   66 (82)
T cd05883           9 MASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLML-KVTKEDDGVPVICLVDHP   66 (82)
T ss_pred             cCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEE-ECchhhCCCEEEEEEcCc
Confidence            355788899999998754331         1  1 23333 44444444 577666664

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>PHA02982 hypothetical protein; Provisional

Probab=86.35  E-value=4.1  Score=31.74  Aligned_cols=77  Identities=18%  Similarity=0.271  Sum_probs=46.4

Q ss_pred             ceEEeCCCcEEEEEEE-eeeCCCEEEEEeCC-EEeecc-------------CCccE---EEecCCcEEEEEeecCCCCCC
Q psy18191        140 SAVVPRHEPTTLNCKA-DGYPEPRIEWYKDG-SLVSAE-------------IGSHR---ILLPAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~-~g~P~p~i~W~~~g-~~l~~~-------------~~~~~---~~~~~~~l~~~~vi~~v~~~d  201 (238)
                      ++....++++.|.|.. .+.-.....|+.+. ..+...             ..+++   ...-++.... +.|+.+..+.
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~ST-LTIkk~~i~N  111 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSST-FTMKKPDPQN  111 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEecccee-EEeccCCccc
Confidence            4566789999999985 34445668898743 333311             01111   1111222221 2367779999


Q ss_pred             CeEEEEEEEeCCCcee
Q psy18191        202 SGVYWCVARNELGFAR  217 (238)
Q Consensus       202 ~G~Y~C~a~N~~G~~~  217 (238)
                      .|-|+|.|....+..+
T Consensus       112 ~GCYtc~~ks~~~k~E  127 (251)
T PHA02982        112 LGCFTCEAKDAEGKEE  127 (251)
T ss_pred             CCceEEEEecCCCchh
Confidence            9999999998776653

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=85.32  E-value=1.1  Score=30.21  Aligned_cols=23  Identities=4%  Similarity=-0.018  Sum_probs=15.7

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCC
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..|.|.++..+|+|.|.|...+.
T Consensus        65 ~~L~I~~l~~sDsgtY~C~v~~~   87 (94)
T cd07690          65 FPLIIKNLKIEDSDTYICEVEDK   87 (94)
T ss_pred             EEEEECCCCHHHCEEEEEEECCc
Confidence            45777777777777777665553

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PHA03271 envelope glycoprotein C; Provisional

Probab=84.36  E-value=12  Score=32.44  Aligned_cols=44  Identities=16%  Similarity=0.373  Sum_probs=31.7

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC---EEEEEeCCEEeecc
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEP---RIEWYKDGSLVSAE  175 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p---~i~W~~~g~~l~~~  175 (238)
                      .+|.+...  ...+..|+...-.|.+...-+|   .++|+.||..+...
T Consensus       246 RPPsVsV~--a~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~  292 (490)
T PHA03271        246 RPASVDVL--APPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPR  292 (490)
T ss_pred             cCCCcccc--CCccccCCCceEEEEeeeecCCCceEEEEEeCCccccCc
Confidence            45555443  3445789999999998776544   49999999887653

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=84.03  E-value=3.7  Score=26.86  Aligned_cols=19  Identities=16%  Similarity=0.059  Sum_probs=14.4

Q ss_pred             cccCCCccEEEeccccccc
Q psy18191         58 GGFYPKPICLRFQDLLPQS   76 (238)
Q Consensus        58 ~~~~~~~~~~w~~~~~~~~   76 (238)
                      .++.|...+.|+|++..+.
T Consensus         9 ~gf~P~~~itW~kng~~l~   27 (83)
T cd05884           9 SGSKPAADIRWFKNDKEIK   27 (83)
T ss_pred             CCccCCCEEEEEECCEECc
Confidence            3556678899999998654

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=82.25  E-value=2.7  Score=27.86  Aligned_cols=40  Identities=3%  Similarity=-0.095  Sum_probs=24.7

Q ss_pred             CccEEEecccccccc-----ce-EEEEEcCCCCCCCCCceEEEeCC
Q psy18191         63 KPICLRFQDLLPQSK-----QG-LMYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        63 ~~~~~w~~~~~~~~~-----~g-~~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      ...+.||+++.....     .+ ..-+.+..+.++|+|.|.|...+
T Consensus        29 ~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~   74 (91)
T cd05751          29 AVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRS   74 (91)
T ss_pred             CCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEEC
Confidence            446788888663211     11 23456677888888888876544

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=82.05  E-value=1.3  Score=27.39  Aligned_cols=39  Identities=10%  Similarity=0.011  Sum_probs=24.6

Q ss_pred             CccEEEecccc------ccccceEEEEEcCCCCCCCCCceEEEeC
Q psy18191         63 KPICLRFQDLL------PQSKQGLMYLVGSQASPDYPNRFSLCNN  101 (238)
Q Consensus        63 ~~~~~w~~~~~------~~~~~g~~~l~~~~~~~~~~g~y~~~~~  101 (238)
                      .+.+.|+....      ........-|.+..+..+|.|.|+|.+.
T Consensus        30 ~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~   74 (75)
T PF13927_consen   30 PPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIAS   74 (75)
T ss_dssp             SEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEE
T ss_pred             CeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEE
Confidence            77899991111      1111123456777888999999997654

...

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=81.52  E-value=1.2  Score=28.12  Aligned_cols=41  Identities=15%  Similarity=0.211  Sum_probs=26.8

Q ss_pred             CCCccEEEeccccccccceEEEEEcCCCCCCCCCceEEEeCC
Q psy18191         61 YPKPICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g~~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      .+.+.+.|++++..+....-. +++..+..+|+|.|+|.+.+
T Consensus        26 ~p~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~g~y~C~~~~   66 (80)
T PF13895_consen   26 NPPPQVQWYKNGSPINSSQNG-LFIPNVSPEDSGNYTCRASN   66 (80)
T ss_dssp             SSSSEEEEEETTEEEEEESSE-EEESSEEGGGTEEEEEEEEE
T ss_pred             ccceeeeeeeeeeeeeeeeee-eeeeeeccccCEEEEEEEEe
Confidence            344679999987655432111 45567778888888876654

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	238
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		3e-26
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		3e-26
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		4e-26
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		2e-25
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-07
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		5e-07
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-07
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		6e-07
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		2e-06
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-06
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		4e-06
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-06
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		6e-06
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		7e-06
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		9e-06
1rhf_A	182	Crystal Structure Of Human Tyro3-D1d2 Length = 182		1e-05
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		2e-05
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		3e-05
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		1e-04
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		1e-04
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		1e-04
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		1e-04
3kld_A	384	Ptprg Cntn4 Complex Length = 384		1e-04
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		1e-04
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		2e-04
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		2e-04
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		2e-04
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		2e-04
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		3e-04
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		3e-04
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		4e-04
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		6e-04
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		6e-04

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA-EIGSHRILLPAGS 187
           Y+ PRI EHP   VV ++EP TLNCK +G PEP IEW+KDG  VS  E  SHR+    G+
Sbjct: 7   YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA 66
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
           LFF   + GKK+ D G YWCVA+N +G A S++A+L +A
Sbjct: 67  LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA 105

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA-EIGSHRILLPAGS 187
           Y+ PRI EHP   VV ++EP TLNCK +G PEP IEW+KDG  VS  E  SHR+    G+
Sbjct: 7   YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA 66
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
           LFF   + GKK+ D G YWCVA+N +G A S++A+L +A
Sbjct: 67  LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA 105

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/99 (58%), Positives = 70/99 (70%), Gaps = 4/99 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---SHRILLPAGSL 188
           PRI EHP+  +V + EP TLNCKA+G P P IEWYK G  V  +     SHR+LLP+GSL
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 189 FFLSLVHGKKDT-DSGVYWCVARNELGFARSKNATLDVA 226
           FFL +VHG+K   D GVY CVARN LG A S +A+L+VA
Sbjct: 70  FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA 108

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 69/98 (70%), Gaps = 4/98 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---SHRILLPAGSL 188
           PRI EHP+  +V + EP TLNCKA+G P P IEWYK G  V  +     SHR+LLP+GSL
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 189 FFLSLVHGKKDT-DSGVYWCVARNELGFARSKNATLDV 225
           FFL +VHG+K   D GVY CVARN LG A S +A+L+V
Sbjct: 70  FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
           P I   P   VV R    T+ C A G P+P I W+KD   V     + RI  L +G+L  
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGAL-- 166
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
              +   ++TD G Y CVA N  G   S  A L V
Sbjct: 167 --QIESSEETDQGKYECVATNSAGVRYSSPANLYV 199

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
           P I   P   VV R    T+ C A G P+P I W+KD   V     + RI  L +G+L  
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGAL-- 166
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
              +   ++TD G Y CVA N  G   S  A L V
Sbjct: 167 --QIESSEETDQGKYECVATNSAGVRYSSPANLYV 199

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
           P I   P   VV R    T+ C A G P+P I W+KD   V     + RI  L +G+L  
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGAL-- 166
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
              +   ++TD G Y CVA N  G   S  A L V
Sbjct: 167 --QIESSEETDQGKYECVATNSAGVRYSSPANLYV 199

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
           P I   P   VV R    T+ C A G P+P I W+KD   V     + RI  L +G L  
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGL-- 166
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
              +   ++TD G Y CVA N  G   S  A L V
Sbjct: 167 --QIESSEETDQGKYECVASNSAGVRYSSPANLYV 199

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
           + P IT    +      E  T  C  + YP+P I W ++  L+      + I      L 
Sbjct: 6   KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLT 65
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            LS+    +D+D G+Y C A N +G A      L V  K
Sbjct: 66  ILSV----EDSDDGIYCCTANNGVGGAVESCGALQVKMK 100

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
           P I   P   VV R    T+ C A G P+P I W+KD   V     + RI  L + S+  
Sbjct: 109 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGA 168
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
           L  +   +++D G Y CVA N  G   S  A L V G
Sbjct: 169 LQ-IEQSEESDQGKYECVATNSAGTRYSAPANLYVRG 204

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P IT+ P + V+       + CKA G P P I W K+ + V  ++ + R  L  G   FL
Sbjct: 113 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKV--DMSNPRYSLKDG---FL 167
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            + + +++ D G Y CVA N +G   SK   L V
Sbjct: 168 QIENSREE-DQGKYECVAENSMGTEHSKATNLYV 200

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P IT+ P + V+       + CKA G P P I W K+ + V  ++ + R  L  G   FL
Sbjct: 111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKV--DMSNPRYSLKDG---FL 165
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            + + +++ D G Y CVA N +G   SK   L V
Sbjct: 166 QIENSREE-DQGKYECVAENSMGTEHSKATNLYV 198

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
           P I   P   VV +    T+ C A G P+P I W+KD   V     + RI  L +G+L  
Sbjct: 109 PSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGAL-- 166
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
              +   +++D G Y CVA N  G   S  A L V
Sbjct: 167 --QIESSEESDQGKYECVATNSAGTRYSAPANLYV 199

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
           P I   P   VV +    T+ C A G P+P I W+KD   V     + RI  L +G+L  
Sbjct: 110 PTIDMGPQLKVVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGAL-- 167
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
              +   +++D G Y CVA N  G   S  A L V
Sbjct: 168 --QIESSEESDQGKYECVATNSAGTRYSAPANLYV 200

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 43/88 (48%), Gaps = 16/88 (18%)
Query: 136 EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF----L 191
           EH  +A+    EP TL CK DG PE RI WYK+ + + +         PA  + F     
Sbjct: 13  EHVEAAI---GEPITLQCKVDGTPEIRIAWYKEHTKLRS--------APAYKMQFKNNVA 61
Query: 192 SLVHGKKD-TDSGVYWCVARNELGFARS 218
           SLV  K D +D G Y C A N +G   S
Sbjct: 62  SLVINKVDHSDVGEYTCKAENSVGAVAS 89

>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGS---LF 189
           ++   P    V + +P  LNC  +G  EP I+W KDG++V       ++ +P      + 
Sbjct: 4   KLMGAPVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQ---NLDQLYIPVSEQHWIG 60
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
           FLSL    + +D+G YWC   +      S+   L V G
Sbjct: 61  FLSL-KSVERSDAGRYWCQVEDGGETEISQPVWLTVEG 97

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 137 HPASAVVPRHEPTTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVH 195
            P+ AV  R     LNC A+     P I+W KDG +++  +   +  LP GSL   +++H
Sbjct: 27  EPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILH 86
Query: 196 GKKDT-DSGVYWCVAR-NELGFARSKNATLDVAG 227
            +    D G+Y C A   + G   S+ A + VAG
Sbjct: 87  SRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG 120

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLP-AGSLFFL 191
           R  +   +A     +  TL C ADG+PEP + W KDG  +  E    +      GS   +
Sbjct: 15  RARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELII 74
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATL 223
             V     +D   Y C+A N+ G    ++AT+
Sbjct: 75  KKVDK---SDEAEYICIAENKAG---EQDATI 100

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 140 SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKD 199
           +A   R E  T +C+A G PEP I W+++G L+  E     IL   GS   L+ V    +
Sbjct: 107 NATAERGEEMTFSCRASGSPEPAISWFRNGKLI--EENEKYIL--KGSNTELT-VRNIIN 161
Query: 200 TDSGVYWCVARNELGFARSKNATLDV 225
           +D G Y C A N+ G    K A L V
Sbjct: 162 SDGGPYVCRATNKAG-EDEKQAFLQV 186

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 140 SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKD 199
           +A   R E  T +C+A G PEP I W+++G L+     + + +L  GS   L+ V    +
Sbjct: 203 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE---NEKYILK-GSNTELT-VRNIIN 257
Query: 200 TDSGVYWCVARNELGFARSKNATLDV 225
           +D G Y C A N+ G    K A L V
Sbjct: 258 SDGGPYVCRATNKAG-EDEKQAFLQV 282

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 140 SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKD 199
           +A   R E  T +C+A G PEP I W+++G L+      +   +  GS   L+ V    +
Sbjct: 13  NATAERGEEMTFSCRASGSPEPAISWFRNGKLIE----ENEKYILKGSNTELT-VRNIIN 67
Query: 200 TDSGVYWCVARNELGFARSKNATLDV 225
           +D G Y C A N+ G    K A L V
Sbjct: 68  SDGGPYVCRATNKAG-EDEKQAFLQV 92

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           PR  + P +  +       ++ K  G P P + WY +G  V ++   H++++    L  L
Sbjct: 6   PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSD-DLHKMIVSEKGLHSL 64
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            +    + +D+G Y CVA+N  G A +    LDV  K
Sbjct: 65  -IFEVVRASDAGAYACVAKNRAGEA-TFTVQLDVLAK 99

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 132 PRITEHPASAVVP---RHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG-SHRILLPAGS 187
           P   + P+  + P     +   L+C+  G P+P I W  +G+ V  +IG   R  +  GS
Sbjct: 6   PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDV--DIGMDFRYSVVDGS 63
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
           L    + +  K  D+G Y C+A N  G   S+ A L  A
Sbjct: 64  LL---INNPNKTQDAGTYQCIATNSFGTIVSREAKLQFA 99

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 132 PRITEHPASAVVP---RHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG-SHRILLPAGS 187
           P   + P+  + P     +   L+C+  G P+P I W  +G+ V  +IG   R  +  GS
Sbjct: 5   PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDV--DIGMDFRYSVVDGS 62
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
           L    + +  K  D+G Y C+A N  G   S+ A L  A
Sbjct: 63  LL---INNPNKTQDAGTYQCIATNSFGTIVSREAKLQFA 98

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGS 187
           G+R P   + P    V   +   ++CK  G P P + W  DG  V  +  +H++L+    
Sbjct: 7   GFR-PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPD-SAHKMLVRENG 64
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELG 214
           +  L ++      D+G+Y C+A N  G
Sbjct: 65  VHSL-IIEPVTSRDAGIYTCIATNRAG 90

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 132 PRITEHPASAVVPR---HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
           P   E PA  + P     E  TL C+A   P     W  +G+ +     S R  L AG L
Sbjct: 5   PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDS-RYRLVAGDL 63
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL 223
              + V  K   D+G Y CVA N  G   S+ A+L
Sbjct: 64  VISNPVKAK---DAGSYQCVATNARGTVVSREASL 95

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGS 187
           G   P   E   +  V      TL CK  G+P+P ++WY+ G  + A+   +RI    G 
Sbjct: 1   GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
              L ++    D D+ VY   A N+ G + S  A+L+V
Sbjct: 61  YHQL-IIASVTDDDATVYQVRATNQ-GGSVSGTASLEV 96

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGS 187
           G   P   E   +  V      TL CK  G+P+P ++WY+ G  + A+   +RI    G 
Sbjct: 1   GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
              L ++    D D+ VY   A N+ G + S  A+L+V
Sbjct: 61  YHQL-IIASVTDDDATVYQVRATNQ-GGSVSGTASLEV 96

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 147 EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYW 206
           +  TL C ADG+PEP + W KDG  +  E       + +     L++ +  K+ D   Y 
Sbjct: 212 QSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKN-DEAEYV 270
Query: 207 CVARNELG 214
           C+A N+ G
Sbjct: 271 CIAENKAG 278

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 132 PRITEHPASAVVPRH---EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
           P   + P S + P     E   L C+A   P     W  +G+ +  E GS   L+     
Sbjct: 4   PVFEDQPLSVLFPEESTEEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGN-- 61
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL 223
             L +++  K  D+GVY C+A N +G   S+ A L
Sbjct: 62  --LVIMNPTKAQDAGVYQCLASNPVGTVVSREAIL 94

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P   E   +  V      TL CK  G+P+P ++WY+ G  + A+   +RI    G    L
Sbjct: 3   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 62
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            ++    D D+ VY   A N+ G + S  A+L+V
Sbjct: 63  -IIASVTDDDATVYQVRATNQ-GGSVSGTASLEV 94

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Query: 118 LPLFPGVHGDGYRVPRITEHPASA-VVPRHEPTTLNCKADGYPEPRIEWYKDGSLVS-AE 175
           +P+ P +  +  + P IT+  A   +V   +   + C+A G P P   W ++    + A+
Sbjct: 3   IPMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAK 62
Query: 176 IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
                +   +G+L       G+ +   G Y C ARN+ G A S    L V+
Sbjct: 63  DPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVS 113

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 147 EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYW 206
           E   L+C+  G P P I+WY+ G  +   I S +  + +        V  ++  D GVY 
Sbjct: 23  EAAQLSCQIVGRPLPDIKWYRFGKEL---IQSRKYKMSSDGRTHTLTVMTEEQEDEGVYT 79
Query: 207 CVARNELGFARSKNATL 223
           C+A NE+G   + +  L
Sbjct: 80  CIATNEVGEVETSSKLL 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	238
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	8e-36
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-33
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-17
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	4e-32
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	8e-22
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	7e-32
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	7e-21
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-29
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	6e-18
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-16
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-13
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	7e-29
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-20
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-14
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-11
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	9e-29
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-21
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	9e-29
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	6e-19
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-28
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	9e-20
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-14
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-11
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-28
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-19
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	6e-19
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	7e-17
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	7e-28
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-19
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-13
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-11
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-27
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-17
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-13
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-09
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	5e-27
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-26
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-19
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-17
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-17
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-16
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-14
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-10
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	6e-26
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	5e-22
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	7e-26
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-25
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	5e-21
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-25
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-21
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-16
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-24
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-17
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-24
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-18
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-17
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-16
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-16
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-16
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	9e-24
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-23
2ens_A	96	Advanced glycosylation END product-specific recept	8e-23
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-22
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-22
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	8e-18
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	1e-21
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-21
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	5e-18
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-15
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-21
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	6e-17
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-21
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-21
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-15
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-14
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	7e-12
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	7e-21
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	7e-19
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-20
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-20
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-17
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-20
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	6e-14
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-20
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	4e-18
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	4e-17
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	5e-20
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	5e-20
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-18
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	6e-20
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	6e-20
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-18
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-19
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-13
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-19
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	1e-19
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	1e-19
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-19
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-19
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-19
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-15
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-14
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-12
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-09
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	5e-19
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	5e-14
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	5e-19
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	7e-19
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-15
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	7e-19
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	4e-10
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-07
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-18
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-04
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-18
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-17
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-15
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-18
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-14
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-18
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-15
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-14
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	7e-14
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-11
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-10
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-08
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-18
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-16
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-15
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-15
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-14
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-12
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-12
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	7e-18
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	9e-18
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-09
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	9e-18
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-17
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	9e-17
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	9e-14
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-17
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	3e-17
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	4e-17
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-16
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	4e-17
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	5e-14
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	4e-17
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-16
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	7e-15
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-16
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	3e-16
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	5e-16
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	8e-16
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-10
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	5e-16
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-08
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	8e-16
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-10
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-09
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-15
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-15
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-15
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	4e-14
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-15
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-06
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	9e-15
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-14
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-14
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	6e-07
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-06
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-06
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-04
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	4e-14
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-14
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	9e-13
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	4e-11
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-13
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	6e-07
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-11
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-13
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	8e-12
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	6e-10
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-13
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	8e-11
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-08
1he7_A	126	High affinity nerve growth factor receptor; transf	3e-13
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	5e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	8e-10
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	7e-13
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	3e-12
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	7e-13
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	7e-13
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-13
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-12
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-09
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-06
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	1e-12
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-12
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	3e-12
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	3e-11
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-08
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-12
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-10
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-12
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	5e-12
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	1e-07
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	5e-12
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	4e-08
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-06
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	5e-12
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	6e-12
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	8e-12
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	9e-12
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-10
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	9e-12
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-08
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-07
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-11
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-05
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	1e-11
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-11
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	3e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-11
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	4e-11
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	3e-10
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	5e-08
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	5e-11
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	3e-06
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-05
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	6e-11
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	7e-11
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	9e-11
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	1e-10
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-10
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-05
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-10
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-08
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	4e-08
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	3e-10
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	5e-10
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	5e-10
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	6e-10
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-04
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-10
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	7e-10
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	9e-10
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	1e-09
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-04
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-09
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-09
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-09
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-09
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	5e-04
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-09
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	9e-09
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-09
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	4e-08
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-09
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	5e-09
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-04
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-08
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	7e-08
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-07
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-07
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-06
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-05
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-05
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-07
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	5e-07
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	4e-07
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	4e-07
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	5e-07
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	5e-07
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	8e-07
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	1e-06
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	1e-06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	7e-05
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	3e-06
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	4e-06
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	4e-06
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	6e-06
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	7e-06
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	9e-06
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	1e-05
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	2e-05
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	2e-05
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	2e-04
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	2e-05
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	4e-05
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	8e-04
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	5e-05
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	1e-04
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	3e-04
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	3e-04
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	6e-04
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	3e-04
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	4e-04
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	6e-04
3c5j_A	181	HLA class II histocompatibility antigen, DR alpha;	7e-04

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score =  122 bits (307), Expect = 8e-36
 Identities = 58/100 (58%), Positives = 70/100 (70%), Gaps = 4/100 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---SHRILLPAGSL 188
           PRI EHP+  +V + EP TLNCKA+G P P IEWYK G  V  +     SHR+LLP+GSL
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69

Query: 189 FFLSLVHGKKD-TDSGVYWCVARNELGFARSKNATLDVAG 227
           FFL +VHG+K   D GVY CVARN LG A S +A+L+VA 
Sbjct: 70  FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  119 bits (301), Expect = 1e-33
 Identities = 53/99 (53%), Positives = 68/99 (68%), Gaps = 1/99 (1%)

Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA-EIGSHRILLPAGS 187
           Y+ PRI EHP   VV ++EP TLNCK +G PEP IEW+KDG  VS  E  SHR+    G+
Sbjct: 7   YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA 66

Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
           LFF   + GKK+ D G YWCVA+N +G A S++A+L +A
Sbjct: 67  LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA 105

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 78.0 bits (192), Expect = 1e-17
 Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 11/101 (10%)

Query: 132 PRITEHPASAVVPRHEPTTLNC-KADGYPEPRIEWYKDGSLV-----SAEIGSHRI-LLP 184
                 P    V + E   L C    G PEP + W KDG  +      +   S R+ ++ 
Sbjct: 109 DDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVD 168

Query: 185 AGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            G+L   ++    +  D G Y C+A+N +G   S  A L V
Sbjct: 169 GGNLLISNV----EPIDEGNYKCIAQNLVGTRESSYAKLIV 205

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  115 bits (290), Expect = 4e-32
 Identities = 31/102 (30%), Positives = 42/102 (41%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P I   P +  V      +  C A G P P I W K+G  VS     + +L   G +  L
Sbjct: 7   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTAT 233
            +   +   D   Y CVA N +G A S +ATL +     T  
Sbjct: 67  RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPA 108

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 88.7 bits (220), Expect = 8e-22
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P IT+ P + V+       + CKA G P P I W K+ + V  ++ + R  L  G L   
Sbjct: 111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKV--DMSNPRYSLKDGFL--- 165

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             +   ++ D G Y CVA N +G   SK   L V
Sbjct: 166 -QIENSREEDQGKYECVAENSMGTEHSKATNLYV 198

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  114 bits (288), Expect = 7e-32
 Identities = 57/100 (57%), Positives = 69/100 (69%), Gaps = 4/100 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE---IGSHRILLPAGSL 188
           PRI EHP+  +V + EP TLNCKA+G P P IEWYK G  V  +     SHR+LLP+GSL
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69

Query: 189 FFLSLVHGK-KDTDSGVYWCVARNELGFARSKNATLDVAG 227
           FFL +VHG+    D GVY CVARN LG A S +A+L+VA 
Sbjct: 70  FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAI 109

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 86.0 bits (213), Expect = 7e-21
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
               ++P+  +V   EP  + C+   G+PEP I W KDGS +  +    RI +  G L  
Sbjct: 112 DDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPL--DDKDERITIRGGKL-- 167

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             ++   + +D+G Y CV  N +G   S+ A L V
Sbjct: 168 --MITYTRKSDAGKYVCVGTNMVGERESEVAELTV 200

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  111 bits (280), Expect = 3e-29
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 5/97 (5%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           P + + PA  +   + PT L C  +G  +  +  W KDG   + +  +  +    GSL F
Sbjct: 7   PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVF 66

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
           L      + +D G Y C A    G A S+  +     
Sbjct: 67  LRP----QASDEGHYQCFAETPAGVASSRVISFRKTY 99

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 80.7 bits (199), Expect = 6e-18
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 10/95 (10%)

Query: 132 PRITEHPASAV-VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           P+  + P   + V + +  T+ CK  G P P + W  +   +S      R  +    L  
Sbjct: 309 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS----GGRATVTDSGLVI 364

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             + +     D G Y C A NE G        + V
Sbjct: 365 KGVKN----GDKGYYGCRATNEHGDKYF-ETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 76.9 bits (189), Expect = 2e-16
 Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 7/114 (6%)

Query: 115 PPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA 174
              +      +      P         +    + T + C     P     ++K+G  V+ 
Sbjct: 196 EYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNG 255

Query: 175 EIG---SHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                 +         L F +        D GVY C   N +G  +  +  L V
Sbjct: 256 NPEDRITRHNRTSGKRLLFKTT----LPEDEGVYTCEVDNGVGKPQKHSLKLTV 305

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 66.9 bits (163), Expect = 4e-13
 Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 7/100 (7%)

Query: 132 PRITEHPASAVVPRHEPTTLNCK-ADGYPEPRIEWYKDG-----SLVSAEIGSHRILLPA 185
                           P  L+C   + YP+P I W K       +    +        P 
Sbjct: 101 IASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPD 160

Query: 186 GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           G+L+F   V  +  +D   Y C A+N            ++
Sbjct: 161 GNLYFTI-VTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEI 199

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  111 bits (279), Expect = 7e-29
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 2/111 (1%)

Query: 119 PLFPGVHGDGYRVPRITEHPAS-AVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG 177
           P+ P +  +  + P IT+  A   +V   +   + C+A G P P   W ++    +    
Sbjct: 4   PMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKD 63

Query: 178 SH-RILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
               +   +G+L       G+ +   G Y C ARN+ G A S    L V+ 
Sbjct: 64  PRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK 114

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 88.8 bits (220), Expect = 1e-20
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 5/94 (5%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P   + P + ++   E   L C+A+G P+P ++W  +G  + +   +    +   ++ F 
Sbjct: 313 PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFR 372

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                 + +   VY C   NE G+    NA + V
Sbjct: 373 DT----QISSRAVYQCNTSNEHGYL-LANAFVSV 401

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 70.3 bits (172), Expect = 2e-14
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 122 PGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI 181
            GV              +S +V R     L C A G P P I WYK G  + +     + 
Sbjct: 213 RGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPS--DKAKF 270

Query: 182 LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                +L   ++     + DSG Y+C+A N++G  R    ++ V
Sbjct: 271 ENFNKALRITNV----SEEDSGEYFCLASNKMGSIRHT-ISVRV 309

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 61.4 bits (149), Expect = 3e-11
 Identities = 24/108 (22%), Positives = 33/108 (30%), Gaps = 8/108 (7%)

Query: 129 YRVPRITEHPASAV-VPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAG 186
            + P   +     V V    P TL C    G P P I W         +          G
Sbjct: 113 SKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQ-DKRVSQGHNG 171

Query: 187 SLFFLSLVHGKKDTDSGVYWCVARNELGFA--RSKNATLDVAGKISTA 232
            L+F +++   +D     Y C AR        +    TL V      A
Sbjct: 172 DLYFSNVM--LQD-MQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVA 216

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  106 bits (267), Expect = 9e-29
 Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 2/97 (2%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           PR T  P           +  C+A G P P+I W K G  VS +     I    GS   L
Sbjct: 7   PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQ-RFEVIEFDDGSGSVL 65

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            +   +   D  +Y CVA N +G   S +  L V  +
Sbjct: 66  RIQPLRTPRDEAIYECVASNNVGEI-SVSTRLTVLRE 101

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 87.6 bits (217), Expect = 2e-21
 Identities = 34/101 (33%), Positives = 43/101 (42%), Gaps = 8/101 (7%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI----LLPAGS 187
           P I   P   VV R    T+ C A G P+P I W+KD   V     + RI        G+
Sbjct: 109 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGA 168

Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
           L     +   +++D G Y CVA N  G   S  A L V G 
Sbjct: 169 L----QIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGT 205

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  106 bits (265), Expect = 9e-29
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 1/96 (1%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
            ++   P    V + +P  LNC  +G  EP I+W KDG++V      +  +     + FL
Sbjct: 3   LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 62

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
           SL   ++  D+G YWC   +      S+   L V G
Sbjct: 63  SLKSVERS-DAGRYWCQVEDGGETEISQPVWLTVEG 97

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 80.2 bits (198), Expect = 6e-19
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 13/95 (13%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           P  T  P    VP + P  L+C+A G PEP  I W++  + +     S  +L   G    
Sbjct: 99  PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGV--- 155

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                    T S ++ C A N  G A S+ AT+ +
Sbjct: 156 ---------TQSTMFSCEAHNLKGLASSRTATVHL 181

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  109 bits (274), Expect = 2e-28
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 7/99 (7%)

Query: 132 PRITEHPASAVVP---RHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
           P   + P+  + P     +   L+C+  G P+P I W  +G+ V       R  +  GSL
Sbjct: 6   PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIG-MDFRYSVVDGSL 64

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
              +        D+G Y C+A N  G   S+ A L  A 
Sbjct: 65  LINNPNK---TQDAGTYQCIATNSFGTIVSREAKLQFAY 100

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 86.0 bits (213), Expect = 9e-20
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 8/97 (8%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P   +      V   E     CKA+G P+P   W K+G  +       RI +  G+L   
Sbjct: 296 PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLT---RDRIQIEQGTLNIT 352

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            +       D+G+Y CVA N+ G     +A L V  +
Sbjct: 353 IVNLS----DAGMYQCVAENKHGVI-FSSAELSVIAE 384

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 70.2 bits (172), Expect = 3e-14
 Identities = 28/112 (25%), Positives = 38/112 (33%), Gaps = 9/112 (8%)

Query: 115 PPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK-DGSLVS 173
           P  L L        Y      + P +    +     L C A G P P I W + DG  ++
Sbjct: 189 PTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIA 248

Query: 174 AEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                 R     G L   +     +  D+G Y CVA N  G   +K   L  
Sbjct: 249 ---RKARRHKSNGILEIPNF----QQEDAGSYECVAENSRGKNVAK-GQLTF 292

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 7/97 (7%)

Query: 131 VPRITEHPASAV-VPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
           +        S V V R +   L C       E    W  +      +     +    G+L
Sbjct: 101 LENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQD-NRRFVSQETGNL 159

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           +   +    + +D G Y CV  N +   +       +
Sbjct: 160 YIAKV----EKSDVGNYTCVVTNTVTNHKVLGPPTPL 192

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  109 bits (273), Expect = 4e-28
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 3/108 (2%)

Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRIL 182
            H  G R       P+ AV  R     LNC A+     P I+W KDG +++  +   +  
Sbjct: 14  HHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQ 73

Query: 183 LPAGSLFFLSLVHGK-KDTDSGVYWCVAR-NELGFARSKNATLDVAGK 228
           LP GSL   +++H +    D G+Y C A   + G   S+ A + VAG 
Sbjct: 74  LPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGP 121

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 84.9 bits (210), Expect = 2e-19
 Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 5/107 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
            R      S      +   L C+  G P P I W K+   ++   G  R+ +LP+G+L  
Sbjct: 122 LRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQI 181

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTATDCSF 237
             L    +  DSGVY C ARN         A + +           F
Sbjct: 182 SRL----QPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYF 224

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 83.7 bits (207), Expect = 6e-19
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P    HP++            C   G P P + W K+G +V      +  ++   +L  L
Sbjct: 313 PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIP--SDYFQIVGGSNLRIL 370

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            +V     +D G Y CVA NE G A+S  A L V
Sbjct: 371 GVV----KSDEGFYQCVAENEAGNAQSS-AQLIV 399

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 77.6 bits (191), Expect = 7e-17
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
           +R     + P++ +    +   L C   GYP P   W +   ++         LL   +L
Sbjct: 219 HRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLR-SKKYSLLGGSNL 277

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
              ++     D DSG Y CV   +     + +A L V
Sbjct: 278 LISNV----TDDDSGTYTCVVTYKNENISA-SAELTV 309

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  108 bits (271), Expect = 7e-28
 Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 132 PRITEHPASAVVPRH---EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
           P   E PA  + P     E  TL C+A   P     W  +G+ +       R  L AG L
Sbjct: 5   PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMG-PDSRYRLVAGDL 63

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
              + V      D+G Y CVA N  G   S+ A+L    
Sbjct: 64  VISNPVK---AKDAGSYQCVATNARGTVVSREASLRFGF 99

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 84.1 bits (208), Expect = 4e-19
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P   +               +C A G P P + W +DG  +++    +RI +  G L F 
Sbjct: 295 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS---QNRIEVSGGELRFS 351

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            LV      DSG+Y CVA N+ G     +A L V
Sbjct: 352 KLVLE----DSGMYQCVAENKHGTV-YASAELTV 380

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 67.2 bits (164), Expect = 3e-13
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 10/94 (10%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
               + PA       +  TL C A G P P+I+W K     ++     + L     L   
Sbjct: 208 SIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS-----KWLSSEPLLHIQ 262

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           ++       D G Y C A N  G    +   + +
Sbjct: 263 NV----DFEDEGTYECEAENIKGRDTYQ-GRIII 291

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 62.2 bits (151), Expect = 1e-11
 Identities = 14/92 (15%), Positives = 24/92 (26%), Gaps = 7/92 (7%)

Query: 131 VPRITEHPASAV-VPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGS 187
           +   +      V +         C     YP     W  +           R      G+
Sbjct: 100 LQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN 159

Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSK 219
           L+        + +D G Y C A + + F    
Sbjct: 160 LYIAKT----EASDLGNYSCFATSHIDFITKS 187

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  106 bits (266), Expect = 3e-27
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 130 RVPRITEHPASAV-VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
           + P   + P + +         + CKA G P P I W +       ++   R +   G L
Sbjct: 2   KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61

Query: 189 FFLSLVH--GKKDTDSGVYWCVARNELGFARSKNATLDVA 226
            F        +++  + VY C+ARN+ G   S++  +   
Sbjct: 62  VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAV 101

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 78.1 bits (192), Expect = 5e-17
 Identities = 22/95 (23%), Positives = 30/95 (31%), Gaps = 14/95 (14%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
                 P +  V    P    C+  G P   + W KDG           I      L   
Sbjct: 308 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK---------AIGHSESVLRIE 358

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
           S+       D G+Y C  RN+   A   +A L + 
Sbjct: 359 SVKKE----DKGMYQCFVRNDRESA-EASAELKLG 388

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 68.4 bits (167), Expect = 1e-13
 Identities = 24/117 (20%), Positives = 35/117 (29%), Gaps = 8/117 (6%)

Query: 112 KYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSL 171
           +       L                      +      +L C A G+P P   WYK    
Sbjct: 193 RLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEG 252

Query: 172 V---SAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                A + + R+   +G+L            DSG Y CV  N +G    +   L V
Sbjct: 253 TTRKQAVVLNDRVKQVSGTLIIKDA----VVEDSGKYLCVVNNSVGGESVE-TVLTV 304

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 56.5 bits (136), Expect = 1e-09
 Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 9/100 (9%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGY---PEPRIEWYKDGS---LVSAEIGSHRILLPA 185
                      V R     + C    +       + W+ D        AE     ++LP+
Sbjct: 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS 163

Query: 186 GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           G L    +    +D     Y C  ++ L      +AT   
Sbjct: 164 GELHIREVG--PED-GYKSYQCRTKHRLTGETRLSATKGR 200

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 98.9 bits (247), Expect = 5e-27
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           PR  + P +  +       ++ K  G P P + WY +G  V ++   H++++    L  L
Sbjct: 6   PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSD-DLHKMIVSEKGLHSL 64

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            +    + +D+G Y CVA+N  G A +    LDV  K
Sbjct: 65  -IFEVVRASDAGAYACVAKNRAGEA-TFTVQLDVLAK 99

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  105 bits (262), Expect = 5e-26
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 3/98 (3%)

Query: 132 PRITEHPASAV-VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           P   + P + +         + CKA G P P I W +       ++   R +   G L F
Sbjct: 39  PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVF 98

Query: 191 LSLV--HGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
                   +++  + VY C+ARN+ G   S++  +   
Sbjct: 99  PPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAV 136

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 86.1 bits (213), Expect = 2e-19
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 8/98 (8%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE----IGSHRILLPAGS 187
           PR    P      +     + CKADG+P+P++ W K       E      S  I +  G+
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGT 774

Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           L   ++    + T+ G Y C A N +G   S    + V
Sbjct: 775 LHVDNI----QKTNEGYYLCEAINGIGSGLSAVIMISV 808

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 80.4 bits (198), Expect = 2e-17
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
           Y +P I +      +   E   + C   GYP   I W +D   +   I   + + P G+L
Sbjct: 525 YGLPYIRQ-MEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALP--INRKQKVFPNGTL 581

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
              ++    +++D   Y CVA+N+ G++   +  + V
Sbjct: 582 IIENVE---RNSDQATYTCVAKNQEGYSARGSLEVQV 615

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 79.2 bits (195), Expect = 4e-17
 Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 14/100 (14%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
                 P +  V    P    C+  G P   + W KDG  +       RI          
Sbjct: 344 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRI---------- 393

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST 231
                 K  D G+Y C  RN+   A + +A L + G+   
Sbjct: 394 ---ESVKKEDKGMYQCFVRNDRESAEA-SAELKLGGRFDP 429

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 75.7 bits (186), Expect = 5e-16
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 13/104 (12%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRIL-------LP 184
           P I +      +       L C A G P P I W  DG  ++     +++          
Sbjct: 430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANN-DRYQVGQYVTVNGDV 488

Query: 185 AGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
              L   S+       D G+Y C+A++++G A   +A L+V G 
Sbjct: 489 VSYLNITSV----HANDGGLYKCIAKSKVGVAEH-SAKLNVYGL 527

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 70.7 bits (173), Expect = 3e-14
 Identities = 26/115 (22%), Positives = 36/115 (31%), Gaps = 10/115 (8%)

Query: 116 PSLPLFPGVHGDGYRVPRITEH--PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLV- 172
            +             VP++                  L C A GYP P   WYK      
Sbjct: 231 ATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTT 290

Query: 173 --SAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
              A + + R+   +G+L            DSG Y CV  N +G    +   L V
Sbjct: 291 RKQAVVLNDRVKQVSGTLIIKDA----VVEDSGKYLCVVNNSVGGESVE-TVLTV 340

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 65.0 bits (158), Expect = 2e-12
 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 132 PRITEH-PASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLV--SAEIGSHRILLPAGS 187
           PRI             +  TL+C   G   P  I+W  DG  +     I + R+      
Sbjct: 619 PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSV 678

Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           L   ++    + + +G + C ARN  G        L+V
Sbjct: 679 LTIEAV----EASHAGNFTCHARNLAGHQ-QFTTPLNV 711

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 58.8 bits (142), Expect = 3e-10
 Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 9/97 (9%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKA---DGYPEPRIEWYKDGSLV---SAEIGSHRILLPA 185
                      V R     + C            + W+ D        AE     ++LP+
Sbjct: 139 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS 198

Query: 186 GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNAT 222
           G L    +  G +D     Y C  ++ L      +AT
Sbjct: 199 GELHIREV--GPED-GYKSYQCRTKHRLTGETRLSAT 232

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 99.0 bits (247), Expect = 6e-26
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P IT    +      E  T  C  + YP+P I W ++  L+      + I      L  L
Sbjct: 8   PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTIL 67

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
           S+    +D+D G+Y C A N +G A      L V  K
Sbjct: 68  SV----EDSDDGIYCCTANNGVGGAVESCGALQVKMK 100

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 88.6 bits (220), Expect = 5e-22
 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 6/94 (6%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P+IT  P +  +       L C   G P+P + W K  S +     S   +L +GSL   
Sbjct: 101 PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRE--NSRIAVLESGSL--- 155

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             +H  +  D+G Y CVA+N LG A SK   L+V
Sbjct: 156 -RIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 96.3 bits (240), Expect = 7e-26
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P   + P    V   +   ++CK  G P P + W  DG  V  +  +H++L+    +  L
Sbjct: 10  PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPD-SAHKMLVRENGVHSL 68

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            +       D+G+Y C+A N  G     +  L VA K
Sbjct: 69  IIEPVTSR-DAGIYTCIATNRAGQNSF-SLELVVAAK 103

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 98.3 bits (245), Expect = 1e-25
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P   E   +  V      TL CK  G+P+P ++WY+ G  + A+   +RI    G    L
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            +     D D+ VY   A N+ G   S  A+L+V
Sbjct: 65  IIASVTDD-DATVYQVRATNQGGSV-SGTASLEV 96

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 86.3 bits (214), Expect = 5e-21
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
            +P+  E   +    R E  ++     G P+P I W K   L+      H  ++   S  
Sbjct: 103 HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDN--NGHYQVIVTRSFT 160

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            L   +G +  D+G Y   A+N  G  +     LDV
Sbjct: 161 SLVFPNGVERKDAGFYVVCAKNRFGIDQK-TVELDV 195

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  100 bits (250), Expect = 2e-25
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           PR  + P   +       +  C+A G P+PR+ W K G  V+++     I     +   L
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVL 65

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            +   +   D  VY CVA+N +G     +A L V  +
Sbjct: 66  RIQPLRTPRDENVYECVAQNSVGEITV-HAKLTVLRE 101

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 89.1 bits (221), Expect = 2e-21
 Identities = 36/95 (37%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
           P I   P   VV R    T+ C A G P+P I W+KD   V     + RI  L +G+L  
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQI 168

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            S     ++TD G Y CVA N  G   S  A L V
Sbjct: 169 ESS----EETDQGKYECVATNSAGVRYSSPANLYV 199

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 74.9 bits (184), Expect = 4e-16
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 10/94 (10%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           PR +  P S  +       + C A G P P ++W +    ++       + +    L   
Sbjct: 206 PRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLT---PEDDMPVGRNVLELT 262

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            +       DS  Y CVA + LG   +  A + V
Sbjct: 263 DV------KDSANYTCVAMSSLGVIEAV-AQITV 289

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 96.1 bits (239), Expect = 1e-24
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 12/95 (12%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
            +IT +P S  V   +   L C+A G+P  + +W+K    +               L F 
Sbjct: 19  SKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG--------NTSELIFN 70

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
           ++       D+G Y C   N   F  S+ + LDV 
Sbjct: 71  AV----HVKDAGFYVCRVNNNFTFEFSQWSQLDVC 101

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 78.0 bits (192), Expect = 1e-17
 Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 12/111 (10%)

Query: 116 PSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE 175
                   V G      +I   P S  +       L C A G P P  +W+K+   ++ E
Sbjct: 103 IPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE 162

Query: 176 IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
             + ++           +V        G YWC   N+     SK   + + 
Sbjct: 163 --TKKLY----------MVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID 201

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 98.7 bits (246), Expect = 7e-24
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 8/99 (8%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLP--AGSLF 189
           P   E          EP TL CK DG PE RI WYK+ + + +   ++++       SL 
Sbjct: 6   PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSA-PAYKMQFKNNVASLV 64

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
              + H    +D G Y C A N +G   S +A L +  +
Sbjct: 65  INKVDH----SDVGEYTCKAENSVGAVAS-SAVLVIKER 98

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 81.0 bits (200), Expect = 7e-18
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           PR  +  +       E   L    +G     + W+KD   +  E   +  +  + ++  L
Sbjct: 478 PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRE-SDNIWISYSENIATL 536

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                +   ++G Y C  +NE G      ATL V
Sbjct: 537 QFSRAEPA-NAGKYTCQIKNEAGTQ-ECFATLSV 568

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 79.5 bits (196), Expect = 2e-17
 Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 4/94 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P   + P      +     L C+  G P  ++ W+KD   + +  G    ++    L  +
Sbjct: 385 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS--GKKYKIMSENFLTSI 442

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            +++     D G Y C A N++G   +   ++ +
Sbjct: 443 HILNVDSA-DIGEYQCKASNDVGSD-TCVGSITL 474

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 77.2 bits (190), Expect = 2e-16
 Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 6/98 (6%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL-PAGSLFF 190
           P               P    C+ +G    ++ WYKDG L+  +       +    +L  
Sbjct: 102 PSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQI 161

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
           L        +  G Y C A N LG A S +A L ++  
Sbjct: 162 LQT----DQSHVGQYNCSASNPLGTASS-SAKLTLSEH 194

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 77.2 bits (190), Expect = 2e-16
 Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 7/102 (6%)

Query: 129 YRVPRITEHPA-SAVVPRHEPTTLNCKADGYPEPRIEWYKDGS-LVSAEIGSHRILLPAG 186
              PR  +    S +V + E T   CK  G PE ++ WYKD + +  +       +    
Sbjct: 288 QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 347

Query: 187 SLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            L   +L       DSG Y C A N  G A S + +L V   
Sbjct: 348 VLEMYNL----SVEDSGDYTCEAHNAAGSASS-STSLKVKEP 384

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 76.0 bits (187), Expect = 4e-16
 Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL--PAGSLF 189
           P     P S  +   E  T  C   G    +I W KD   +    G++++ L     +L 
Sbjct: 198 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG-GNYKMTLVENTATLT 256

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            L +       D+G Y C A N  G      A L V   
Sbjct: 257 VLKV----TKGDAGQYTCYASNVAGKDSCS-AQLGVQEP 290

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 91.0 bits (226), Expect = 9e-24
 Identities = 32/97 (32%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P I + P +  V       L+C A G P P I W KDG LVS +  S    L  G L   
Sbjct: 9   PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQ-DSRIKQLENGVLQIR 67

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
                 K  D+G Y C+A    G A + +A ++V   
Sbjct: 68  YA----KLGDTGRYTCIASTPSGEA-TWSAYIEVQEF 99

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 89.3 bits (222), Expect = 3e-23
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 3/97 (3%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P          V   +   ++ +  G P+P + W ++   V  +          G L  L
Sbjct: 6   PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPD-QRRFAEEAEGGLCRL 64

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            ++  ++  D+G Y C A NE G  + + A L+V G+
Sbjct: 65  RILAAERG-DAGFYTCKAVNEYGARQCE-ARLEVRGE 99

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 87.9 bits (218), Expect = 8e-23
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 13/95 (13%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
            ++   P    V      TL C+    P P+I W KDG  +         L P+  L   
Sbjct: 11  VQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLP--------LPPSPVLILP 62

Query: 192 SLVHGKKDTDSGVYWCVARNELGFAR-SKNATLDV 225
            +       D G Y CVA +     + S+  ++ +
Sbjct: 63  EI----GPQDQGTYSCVATHSSHGPQESRAVSISI 93

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 87.1 bits (216), Expect = 2e-22
 Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 6/94 (6%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P I + PA+  +       L CKA G P P I W K+G            +   G+L   
Sbjct: 9   PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGR-DPRATIQEQGTLQIK 67

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           +L    + +D+G Y CVA +  G   S +A LDV
Sbjct: 68  NL----RISDTGTYTCVATSSSGET-SWSAVLDV 96

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 85.1 bits (211), Expect = 1e-21
 Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 12/95 (12%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
            +I   P S  +       L C A G P P  +W+K+   ++ E                
Sbjct: 4   LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE--------TKKLYMVP 55

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
            +         G YWC   N+     SK   + + 
Sbjct: 56  YV----DLEHQGTYWCHVYNDRDSQDSKKVEIIID 86

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 89.9 bits (223), Expect = 1e-21
 Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           + ++T   +   +   E     C A G PE    +   G  + +      ++   G    
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIIS--TQRVVVQKEGVRSR 61

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIS 230
           L++ +   + D+G+Y C A +  G  +     L++  K++
Sbjct: 62  LTIYNANIE-DAGIYRCQATDAKGQTQEATVVLEIYQKLT 100

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 79.9 bits (197), Expect = 5e-18
 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 4/97 (4%)

Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
           Y+     E  +     + E   + C+    P P + W      V+    +   +L   +L
Sbjct: 96  YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 155

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             L++      +D G+Y C  R E          + +
Sbjct: 156 QILNI----NKSDEGIYRCEGRVEARGEIDFRDIIVI 188

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 71.4 bits (175), Expect = 6e-15
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 8/96 (8%)

Query: 132 PRIT--EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
           P I+  +   +A   R E  T +C+A G PEP I W+++G L+  E   + +      L 
Sbjct: 193 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE-ENEKYILKGSNTELT 251

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             ++++    +D G Y C A N+ G      A L V
Sbjct: 252 VRNIIN----SDGGPYVCRATNKAGEDEK-QAFLQV 282

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 87.8 bits (218), Expect = 1e-21
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P I +          E   L+C+  G P P I+WY+ G  +         +   G    L
Sbjct: 8   PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQ--SRKYKMSSDGRTHTL 65

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           +++  +++ D GVY C+A NE+G   + ++ L +
Sbjct: 66  TVMTEEQE-DEGVYTCIATNEVGEVET-SSKLLL 97

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 75.1 bits (185), Expect = 6e-17
 Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 6/100 (6%)

Query: 132 PRITEH---PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
           P+                    L+    G P P + W+    L+  +   +  +      
Sbjct: 101 PQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLL--QNSENITIENTEHY 158

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
             L + + ++ T +G Y     N  G   +    +++  K
Sbjct: 159 THLVMKNVQRKTHAGKYKVQLSNVFGTVDA-ILDVEIQDK 197

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 84.3 bits (209), Expect = 2e-21
 Identities = 27/96 (28%), Positives = 34/96 (35%), Gaps = 4/96 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P I        V          KA G P P   W KDG  ++   G    L      FFL
Sbjct: 7   PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQ--GGKYKLSEDKGGFFL 64

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
             +H    +DSG+Y C  +N  G   S    L +  
Sbjct: 65  -EIHKTDTSDSGLYTCTVKNSAGSVSSS-CKLTIKA 98

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 89.7 bits (222), Expect = 5e-21
 Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 5/99 (5%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
           +        A+  V      TL    D        W    S ++ +           S+ 
Sbjct: 47  QSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMV 106

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            L +      T +G Y    ++E     +   T+ +   
Sbjct: 107 ILKMTE----TQAGEYLLFIQSEATNY-TILFTVSIRNT 140

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 73.2 bits (179), Expect = 3e-15
 Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 8/103 (7%)

Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
                 T          ++   L C ++  PEP +EW    S   +       ++     
Sbjct: 138 RNTLLYTLRRPYFRKMENQ-DALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK 196

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST 231
                     +       C ARNELG   ++  T+D+     T
Sbjct: 197 VL-------HELFGTDIRCCARNELGRECTRLFTIDLNQTPQT 232

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 70.1 bits (171), Expect = 4e-14
 Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 8/98 (8%)

Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
               T       + ++E    + +   YP+ R  W              + L    S+  
Sbjct: 326 FINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFP---CEQKGLDNGYSISK 382

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
                       G Y   A N+     +K  TL++   
Sbjct: 383 FCN----HKHQPGEYIFHAENDDAQF-TKMFTLNIRSG 415

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 63.2 bits (153), Expect = 7e-12
 Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 16/106 (15%)

Query: 131 VPRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSA-------EIGSHRIL 182
                       +   EP  + CKA        + W  +   +            ++R +
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286

Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
           +     F  S+       D+G Y C +         ++A + +  K
Sbjct: 287 IRILFAFVSSV----ARNDTGYYTCSSSKHPS----QSALVTIVEK 324

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 85.5 bits (212), Expect = 7e-21
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 2/99 (2%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P  T+   S VV      T      G+P P + W++DG ++S        +  +     L
Sbjct: 6   PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIS 230
           ++    K  +SG Y   A N  G A S  A L V  + +
Sbjct: 66  TIPAVTKA-NSGRYSLKATNGSGQATST-AELLVKAETA 102

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 80.5 bits (199), Expect = 7e-19
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P   +   S  V +     L  +  G P P +++Y+DG+ + +       +   G L+ L
Sbjct: 104 PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQS--SLDFQISQEGDLYSL 161

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            +     + DSG Y   A N +G A S  A L V
Sbjct: 162 LIAEAYPE-DSGTYSVNATNSVGRATST-AELLV 193

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 82.8 bits (205), Expect = 1e-20
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P IT +  +      E   ++C A G P P+I W+KD   +     S  +L        +
Sbjct: 11  PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE--DSGIVLKDGNRNLTI 68

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
             V   +  D G+Y C A + LG A+ + A   + G
Sbjct: 69  RRV---RKEDEGLYTCQACSVLGCAKVE-AFFIIEG 100

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 84.8 bits (210), Expect = 2e-20
 Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           +    E  +     + E   + C+    P P + W      V+    +   +L   +L  
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 61

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           L++      +D G+Y C  R E          + +
Sbjct: 62  LNI----NKSDEGIYRCEGRVEARGEIDFRDIIVI 92

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 76.7 bits (189), Expect = 1e-17
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
              + +   +A   R E  T +C+A G PEP I W+++G L+  E   + +      L  
Sbjct: 98  AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE-ENEKYILKGSNTELTV 156

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            ++     ++D G Y C A N+ G      A L V
Sbjct: 157 RNI----INSDGGPYVCRATNKAGEDEK-QAFLQV 186

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 84.5 bits (209), Expect = 2e-20
 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 4/97 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---SHRILLPAGSL 188
           P IT H  S      +   + CK+ GYP P   W K  + V  EI        ++   + 
Sbjct: 93  PDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENY 152

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             L++V+ +   D G Y C A N +G A S +  L V
Sbjct: 153 TELNIVNLQITEDPGEYECNATNSIGSA-SVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 66.8 bits (163), Expect = 6e-14
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 12/96 (12%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIE--WYKDGSLVSAEIGSHRILLPAGSLF 189
           PRI       +     P TL C         +   W K+G  ++A   + +         
Sbjct: 4   PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTA---TRKN-ASNMEYR 59

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                   +  DSG Y CV  + +      NAT++V
Sbjct: 60  INKP----RAEDSGEYHCVY-HFVSAP-KANATIEV 89

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 86.3 bits (214), Expect = 2e-20
 Identities = 24/95 (25%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG-SLVSAEIGSHRILLPAGSLFF 190
           P     P S  +   E  T  C   G    +I W KD   +         ++    +L  
Sbjct: 6   PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 65

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           L +       D+G Y C A N  G   S +A L V
Sbjct: 66  LKV----TKGDAGQYTCYASNVAGKD-SCSAQLGV 95

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 80.2 bits (198), Expect = 4e-18
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P   + P      +     L C+  G P  ++ W+KD   + +  G    ++    L  +
Sbjct: 193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS--GKKYKIMSENFLTSI 250

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            +++     D G Y C A N++G       ++ +
Sbjct: 251 HILNVDSA-DIGEYQCKASNDVGSYTC-VGSITL 282

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 77.5 bits (191), Expect = 4e-17
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 132 PRITEHPASA-VVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPA--GSL 188
           PR  +    + +V + E T   CK  G PE ++ WYKD + +       R+        L
Sbjct: 99  PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQES-SKFRMSFVESVAVL 157

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
              +L       DSG Y C A N  G A S + +L V
Sbjct: 158 EMYNL----SVEDSGDYTCEAHNAAGSA-SSSTSLKV 189

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 81.2 bits (201), Expect = 5e-20
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 8/96 (8%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL--PAGSLF 189
            RI   P S  V   E    +C  DG P P + W + G ++S     H++       +  
Sbjct: 15  ARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTS-ARHQVTTTKYKSTFE 73

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             S+    + +D G Y  V  N  G   ++  TL +
Sbjct: 74  ISSV----QASDEGNYSVVVENSEGKQEAE-FTLTI 104

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 83.3 bits (206), Expect = 5e-20
 Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 9/106 (8%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYP-EPRIEWYK-DGSLVSAEIGSHRILLPA-- 185
           RV ++   P+   +   E     C+  G   +  I W+  +G  +S       ++     
Sbjct: 1   RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 186 -GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIS 230
             +L   +        D+G+Y CV   E G        + +  K+ 
Sbjct: 61  SSTLTIYNA----NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLM 102

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 79.9 bits (197), Expect = 1e-18
 Identities = 19/94 (20%), Positives = 24/94 (25%), Gaps = 5/94 (5%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
                 P        E   + C       P I W   G  V  +     I+L    L   
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 160

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            +    K TD G Y C  R            + V
Sbjct: 161 GI----KKTDEGTYRCEGRILAR-GEINFKDIQV 189

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 83.4 bits (206), Expect = 6e-20
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 11/96 (11%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           P   E P    V  + P  L+C+A G PEP  + W +D       + +     P  SL  
Sbjct: 107 PYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAV----PLATAPGHGPQRSLHV 162

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
             L        +  + C A N  G   S+ AT+ V 
Sbjct: 163 PGL------NKTSSFSCEAHNAKGVTTSRTATITVL 192

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 79.9 bits (197), Expect = 1e-18
 Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 7/104 (6%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
                +P +    R    TL C+       P + W +DG ++     +   +        
Sbjct: 3   SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62

Query: 191 LSLVHGK------KDTDSGVYWCVARNELGFARSKNATLDVAGK 228
             +V  +      + +D+G Y C+         S+   + + G 
Sbjct: 63  DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGL 106

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 80.0 bits (198), Expect = 1e-19
 Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P+I E   S  V +        +  G P+P  EWYK+G  +           P  ++  L
Sbjct: 6   PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERS-DRIYWYWPEDNVCEL 64

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            +     + DS      A N  G   S  A L V  K
Sbjct: 65  VIRDVTGE-DSASIMVKAINIAGETSSH-AFLLVQAK 99

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 80.0 bits (198), Expect = 1e-19
 Identities = 29/97 (29%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           PRIT    S  VP  + T         P   ++WY +G  +     S         +  L
Sbjct: 9   PRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQE--SSKIHYTNTSGVLTL 66

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            ++    D DSG Y  V  N  G A    ATLDV G 
Sbjct: 67  EILDCHTD-DSGTYRAVCTNYKGEASDY-ATLDVTGG 101

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 80.1 bits (198), Expect = 1e-19
 Identities = 24/97 (24%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P          +    P T  C+  G P+P+I W+KDG  +S +   + I         L
Sbjct: 9   PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSL 68

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
                  D D G Y  +A N  G        L V   
Sbjct: 69  HTTASTLD-DDGNYTIMAANPQGRISCT-GRLMVQAV 103

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 79.3 bits (196), Expect = 2e-19
 Identities = 22/94 (23%), Positives = 29/94 (30%), Gaps = 7/94 (7%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P  +       V   +   L C   G P PRI W  +G  +               L   
Sbjct: 12  PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQY--ARSTCEAGVAELHIQ 69

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             +      D G Y C+A N LG      A + V
Sbjct: 70  DALP----EDHGTYTCLAENALGQVSCS-AWVTV 98

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 85.1 bits (210), Expect = 3e-19
 Identities = 14/96 (14%), Positives = 27/96 (28%), Gaps = 5/96 (5%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
           +        A+  V      TL    D        W    S ++ +           S+ 
Sbjct: 47  QSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMV 106

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            L +      T +G Y    ++E     +   T+ +
Sbjct: 107 ILKMTE----TQAGEYLLFIQSEATNY-TILFTVSI 137

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 73.2 bits (179), Expect = 3e-15
 Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 8/100 (8%)

Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
                 T          ++   L C ++  PEP +EW    S   +       ++     
Sbjct: 138 RNTLLYTLRRPYFRKMENQ-DALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK 196

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
                     +       C ARNELG   ++  T+D+   
Sbjct: 197 VL-------HELFGTDIRCCARNELGRECTRLFTIDLNQT 229

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 70.9 bits (173), Expect = 2e-14
 Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 8/93 (8%)

Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLS 192
             T       + ++E    + +   YP+ R  W         E    + L    S+    
Sbjct: 328 NATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE---QKGLDNGYSISKFC 384

Query: 193 LVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                     G Y   A N+     +K  TL++
Sbjct: 385 N----HKHQPGEYIFHAENDDAQF-TKMFTLNI 412

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 64.7 bits (157), Expect = 3e-12
 Identities = 19/111 (17%), Positives = 32/111 (28%), Gaps = 17/111 (15%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK--------DGSLVSAEIGSHRILL 183
           P++              +  +C +DGYP P   W K           +            
Sbjct: 416 PQVLAEA--------SASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRK 467

Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTATD 234
             G     S ++  +     +  C A N LG +  +   L+  G      D
Sbjct: 468 VFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTS-CETILLNSPGPFPFIQD 517

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 56.6 bits (136), Expect = 1e-09
 Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 18/108 (16%)

Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSA-------EIGSHR 180
            + P+ T       +   EP  + CKA        + W  +   +            ++R
Sbjct: 227 NQTPQTT--LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNR 284

Query: 181 ILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            ++     F  S+       D+G Y C +         ++A + +  K
Sbjct: 285 TMIRILFAFVSSV----ARNDTGYYTCSSSKHPS----QSALVTIVEK 324

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 81.2 bits (200), Expect = 5e-19
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 14/104 (13%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK-DGSLVSAEI--------GSHRIL 182
             +    +   VP +E   L C   G+  PR+EW    GS  +            + R+ 
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSK-NATLDV 225
             +  + F S+       D+G Y C+   E G    + +  L V
Sbjct: 62  FSSSGITFSSV----TRKDNGEYTCMVSEEGGQNYGEVSIHLTV 101

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 67.7 bits (165), Expect = 5e-14
 Identities = 25/104 (24%), Positives = 34/104 (32%), Gaps = 15/104 (14%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVS---------AEIGSHRI 181
           P        + V       L C   DG P     W+KDG  +              S  I
Sbjct: 105 PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 164

Query: 182 LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
              +G L F  +       DSG Y+C A+N  G A   +    +
Sbjct: 165 DPKSGDLIFDPV----TAFDSGEYYCQAQNGYGTAMR-SEAAHM 203

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 78.6 bits (194), Expect = 5e-19
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P     P S  V   +   L C+    P P++ W ++  +V        +         L
Sbjct: 16  PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTL 75

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            +    K  D+G Y   A NE G        LDV  +
Sbjct: 76  LIKDVNKK-DAGWYTVSAVNEAGVTTCN-TRLDVTAR 110

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 80.8 bits (199), Expect = 7e-19
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 14/104 (13%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEI---------GSHRIL 182
             +        +P + P  L+C   G+  PR+EW  D    +  +            R+ 
Sbjct: 5   VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVT 64

Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSK-NATLDV 225
                + F S+       D+G Y C+   E G +  +    L V
Sbjct: 65  FLPTGITFKSV----TREDTGTYTCMVSEEGGNSYGEVKVKLIV 104

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 70.8 bits (173), Expect = 3e-15
 Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 14/103 (13%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVS--------AEIGSHRIL 182
           P        +         L C   DG P     W+KDG ++             S+ + 
Sbjct: 108 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 167

Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
              G L F  L      +D+G Y C ARN  G   + +  + +
Sbjct: 168 PTTGELVFDPL----SASDTGEYSCEARNGYGTPMT-SNAVRM 205

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 82.8 bits (204), Expect = 7e-19
 Identities = 23/107 (21%), Positives = 33/107 (30%), Gaps = 13/107 (12%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCK-------ADGYPEPRIEWYKDGSLVSAEIG-SHRI 181
                  H         EP  L C        A   P   + W+K+ S  +       R+
Sbjct: 17  SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM 76

Query: 182 LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
               G+L+ L  +      DSG Y C  RN     +  +  L V   
Sbjct: 77  WAQDGALWLLPALQE----DSGTYVCTTRNASYCDKM-SIELRVFEN 118

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 57.8 bits (139), Expect = 4e-10
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 5/76 (6%)

Query: 150 TLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA 209
            L+       + +I+WYKD  L+  +      +     L    +       D+G Y CV 
Sbjct: 144 DLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDV----ALEDAGYYRCVL 199

Query: 210 RNELGFARSKNATLDV 225
                  +  N T  +
Sbjct: 200 TFAHE-GQQYNITRSI 214

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 15/111 (13%)

Query: 127 DGYRVPRITEHPASAVVPRHEPTTLNCKA---DGYPEPRIEWYK-DGSLVSA-------- 174
               +P I     +         T+ CK     G P   + W+  + + + +        
Sbjct: 222 KEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVT 281

Query: 175 EIGSHRILLPAGSLFFLSL-VHGKKDTDSGV-YWCVARNELGFARSKNATL 223
           E           +   + L        D  + + CV  N L F  +   T+
Sbjct: 282 EGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQ-TLRTTV 331

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 80.1 bits (197), Expect = 1e-18
 Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 1/88 (1%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEW-YKDGSLVSAEIGSHRILLPAGSLFF 190
             ++ H   +  P     T+ C  + +P P ++W   +G   +    +  ++        
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLS 164

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARS 218
           +++             CV +N+   A  
Sbjct: 165 VAVDLSLPKPWHLPVTCVGKNDKEEAHG 192

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 19/102 (18%), Positives = 27/102 (26%), Gaps = 20/102 (19%)

Query: 142 VVPRHEPTTLNC---KADGYPEPRIEWYKDG-SLVSAEIGSHRILLPA------------ 185
                E  TL     +    PE  + W+K G       IG     +              
Sbjct: 2   TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61

Query: 186 --GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
              + FFL +         G Y C  +       +K   L V
Sbjct: 62  RSANTFFLVVTAANIS-HDGNYLCRMKLGETEV-TKQEHLSV 101

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 81.5 bits (201), Expect = 1e-18
 Identities = 20/95 (21%), Positives = 26/95 (27%), Gaps = 5/95 (5%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
                 P        E   + C       P I W   G  V  +     I+L    L   
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 160

Query: 192 SLVHGKKDTDSGVYWCVARNELGFAR-SKNATLDV 225
            +    K TD G Y C  R         K+  + V
Sbjct: 161 GI----KKTDEGTYRCEGRILARGEINFKDIQVIV 191

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 78.8 bits (194), Expect = 1e-17
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 9/106 (8%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYP-EPRIEWYK-DGSLVSAEIGSHRIL---LP 184
           RV ++   P+   +   E     C+  G   +  I W+  +G  +S       ++     
Sbjct: 1   RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 185 AGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIS 230
           + +L   +        D+G+Y CV   E G        + +  K+ 
Sbjct: 61  SSTLTIYNA----NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLM 102

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 71.8 bits (176), Expect = 4e-15
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 8/101 (7%)

Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA---EIGSHRILLPAGS 187
             +  +   +A     +  TL C ADG+PEP + W KDG  +     +   H     +  
Sbjct: 196 TVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSE 255

Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
           L   ++       D   Y C+A N+ G   +    L V  K
Sbjct: 256 LTIRNV----DKNDEAEYVCIAENKAGEQDAS-IHLKVFAK 291

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 80.3 bits (198), Expect = 2e-18
 Identities = 30/109 (27%), Positives = 38/109 (34%), Gaps = 11/109 (10%)

Query: 130 RVPRITE----HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLV--SAEIGSHRILL 183
           R P  T           VP        C A G P P + W K+G        IG +++  
Sbjct: 14  RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 73

Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTA 232
              SL   S+V     +D G Y CV  NE G        LDV  +    
Sbjct: 74  QHWSLIMESVVP----SDKGNYTCVVENEYGSINH-TYHLDVVERSRHR 117

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 69.5 bits (170), Expect = 1e-14
 Identities = 22/107 (20%), Positives = 32/107 (29%), Gaps = 9/107 (8%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
           R       PA+A           CK     +P I+W K      ++ G   +        
Sbjct: 117 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKH 176

Query: 190 FLSLVHGKKD--------TDSGVYWCVARNELGFARSKNATLDVAGK 228
                   +          D+G Y C   N +G A   +A L V  K
Sbjct: 177 SGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQ-SAWLTVLPK 222

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 82.9 bits (204), Expect = 2e-18
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P IT +  +      E   ++C A G P P+I W+KD   +  +     +     +L   
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED-SGIVLKDGNRNLTIR 725

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            +    +  D G+Y C A + LG A    A   + G 
Sbjct: 726 RV----RKEDEGLYTCQACSVLGCA-KVEAFFIIEGA 757

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 74.0 bits (181), Expect = 2e-15
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 10/106 (9%)

Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL 183
           VH   + V   +   +       E   +  K  GYP P I+WYK+G      + S+  + 
Sbjct: 324 VHEKPF-VAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGI----PLESNHTIK 378

Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR-SKNATLDVAGK 228
               L  + +     + D+G Y  +  N +   + S   +L V   
Sbjct: 379 AGHVLTIMEV----SERDTGNYTVILTNPISKEKQSHVVSLVVYVP 420

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 71.7 bits (175), Expect = 1e-14
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 9/113 (7%)

Query: 124 VHGDGYRVPRITEHPASAV-VPRHEPTTLNCKADGYPEPRIEWYKDG---SLVSAEIGSH 179
           V   GYR+  +   P+  + +   E   LNC A       I++  +         ++ + 
Sbjct: 216 VVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNR 275

Query: 180 RILLPAGS---LFFLSLVHGK-KDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            +   +GS    F  +L       +D G+Y C A + L      +  + V  K
Sbjct: 276 DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHEK 327

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 69.4 bits (169), Expect = 7e-14
 Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 4/96 (4%)

Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           +PR++       +  +    + C+     +  ++W    +   +E          G    
Sbjct: 31  LPRLSIQKDILTIKANTTLQITCRG----QRDLDWLWPNNQSGSEQRVEVTECSDGLFCK 86

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
              +      D+G Y C  R     +       D  
Sbjct: 87  TLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYR 122

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 60.5 bits (146), Expect = 8e-11
 Identities = 22/114 (19%), Positives = 31/114 (27%), Gaps = 19/114 (16%)

Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
            R P IT  P        E  +L C AD      + WYK G                 +L
Sbjct: 548 TRGPEITLQPDMQPT-EQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNL 606

Query: 189 FFLSLVHGK-----------------KDTDSGVYWCVARNELGFARSKNATLDV 225
             L  ++                      D G Y C+A++     R       +
Sbjct: 607 DTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHC-VVRQL 659

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 59.0 bits (142), Expect = 2e-10
 Identities = 23/128 (17%), Positives = 36/128 (28%), Gaps = 35/128 (27%)

Query: 132 PRITEHPASA---VVPRHEPTTLNCKADGYPEPR-IEWYKDGSLVSA------------- 174
           P+I E    +           TL C     P P  I WY       A             
Sbjct: 421 PQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPY 480

Query: 175 -----------------EIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR 217
                            E+  ++  L  G    +S +  +    S +Y C A N++G   
Sbjct: 481 PCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRG- 539

Query: 218 SKNATLDV 225
            +  +  V
Sbjct: 540 ERVISFHV 547

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 52.1 bits (124), Expect = 5e-08
 Identities = 7/94 (7%), Positives = 21/94 (22%), Gaps = 5/94 (5%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
                        +++   + C             +         G+             
Sbjct: 129 VSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGF--- 185

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             +     + +G+ +C A+      +S    + V
Sbjct: 186 -TIPSYMISYAGMVFCEAKINDESYQS-IMYIVV 217

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 82.3 bits (203), Expect = 3e-18
 Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 6/95 (6%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
                   S  V   +     C+ +        W+ +   +       ++     +L   
Sbjct: 112 KPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVS-PRLQLSNGNRTLTLF 169

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
           ++       D+  Y C  +N +   RS +  L+V 
Sbjct: 170 NV----TRNDTASYKCETQNPVSARRSDSVILNVL 200

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 76.5 bits (188), Expect = 3e-16
 Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 15/102 (14%)

Query: 128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGS 187
            Y     T  P +      E   L+C A   P  +  W+ +G                  
Sbjct: 200 LYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNG----------TFQQSTQE 249

Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFA-RSKNATLDVAGK 228
           LF  ++       +SG Y C A N      R+   T+ V  +
Sbjct: 250 LFIPNI----TVNNSGSYTCQAHNSDTGLNRTTVTTITVYAE 287

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 74.6 bits (183), Expect = 1e-15
 Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 6/102 (5%)

Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL 183
           +               S  V   +     C+ +        W+ +G  +       ++  
Sbjct: 460 ITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVS-PRLQLSN 517

Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
              +L   ++       D+  Y C  +N +   RS   TLDV
Sbjct: 518 GNRTLTLFNV----TRNDARAYVCGIQNSVSANRSDPVTLDV 555

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 74.2 bits (182), Expect = 2e-15
 Identities = 14/97 (14%), Positives = 25/97 (25%), Gaps = 15/97 (15%)

Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
           Y        P  +         L+C +   P P+  W  +G                  L
Sbjct: 557 YGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQ----------HTQVL 606

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           F   +       ++G Y C   N      + +    +
Sbjct: 607 FIAKI----TPNNNGTYACFVSNLATGR-NNSIVKSI 638

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 71.5 bits (175), Expect = 1e-14
 Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 15/97 (15%)

Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
           Y     T  P+          +L+C A   P  +  W  DG           I      L
Sbjct: 379 YGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDG----------NIQQHTQEL 428

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           F  ++     + +SG+Y C A N      S+     +
Sbjct: 429 FISNI----TEKNSGLYTCQANNSAS-GHSRTTVKTI 460

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 65.4 bits (159), Expect = 2e-12
 Identities = 14/110 (12%), Positives = 22/110 (20%), Gaps = 21/110 (19%)

Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVS-----------------AE 175
           ++T       V   +   L             WYK   +                     
Sbjct: 1   KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60

Query: 176 IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                I+ P  SL   ++       D+G Y                   V
Sbjct: 61  YSGREIIYPNASLLIQNI----IQNDTGFYTLHVIKSDLVNEEATGQFRV 106

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 64.6 bits (157), Expect = 3e-12
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 7/94 (7%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P IT    S  V   +   L C+ +        W+ +   +       ++     +L  L
Sbjct: 291 PFITS-NNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVS-PRLQLSNDNRTLTLL 347

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           S+       D G Y C  +NEL    S    L+V
Sbjct: 348 SV----TRNDVGPYECGIQNELSVDHSDPVILNV 377

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 75.2 bits (185), Expect = 7e-18
 Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 11/100 (11%)

Query: 132 PRITE----HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRILLPA 185
           P  T           VP        C A G P P + W K+G     E  IG +++    
Sbjct: 5   PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 64

Query: 186 GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            SL   S+V     +D G Y CV  NE G   +    LDV
Sbjct: 65  WSLIMESVV----PSDKGNYTCVVENEYGSI-NHTYHLDV 99

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 78.0 bits (192), Expect = 9e-18
 Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 3/120 (2%)

Query: 106 KGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEW 165
            G    + +     L      +  R   +   P    +   +   L C   G P P + W
Sbjct: 92  SGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSW 151

Query: 166 YKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            K+   ++       +   AG   + ++       DSG Y  V +N+ G   S + T+ V
Sbjct: 152 LKNEKALAQT-DHCNLKFEAGRTAYFTINGVSTA-DSGKYGLVVKNKYGSETS-DFTVSV 208

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 53.7 bits (129), Expect = 4e-09
 Identities = 13/96 (13%), Positives = 26/96 (27%), Gaps = 14/96 (14%)

Query: 140 SAVVPRHEPTTLNCKADGY----------PEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
           S++        +   A+G            + ++ W  +GS +             G   
Sbjct: 2   SSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY--SDRVKTGVTGEQI 59

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           +L +     + D G Y     +       K   L  
Sbjct: 60  WLQINEPTPN-DKGKYVMELFDGKTGH-QKTVDLSG 93

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 76.4 bits (188), Expect = 9e-18
 Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P  T+      V        +CK +GYP+P + W+KD + V       +I         L
Sbjct: 42  PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES-RHFQIDYDEEGNCSL 100

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           ++     D D   Y C A N LG A    A L V
Sbjct: 101 TISEVCGD-DDAKYTCKAVNSLGEATCT-AELLV 132

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 79.7 bits (196), Expect = 1e-17
 Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 8/101 (7%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
                     V    +   L+C    G P     W KDG+ +     S R+L+    L  
Sbjct: 9   GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVP---SERVLVGPQRLQV 65

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST 231
           L+  H     DSG Y C  R         +  +  A     
Sbjct: 66  LNASH----EDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGD 102

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 77.0 bits (189), Expect = 9e-17
 Identities = 32/103 (31%), Positives = 38/103 (36%), Gaps = 11/103 (10%)

Query: 129 YRVPRITE----HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRIL 182
              P  T           VP        C A G P P I W K+G     E  IG  ++ 
Sbjct: 117 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR 176

Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
               SL   S+V     +D G Y CV  N+ G  R    TLDV
Sbjct: 177 HQQWSLVMESVV----PSDRGNYTCVVENKFGSIRQ-TYTLDV 214

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 68.5 bits (167), Expect = 9e-14
 Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 11/106 (10%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK----DGSLVSAEIGSHRILLPA 185
           R       PA+           +CK     +P I+W K    +GS V  +   +  +L  
Sbjct: 221 RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKT 280

Query: 186 GSLFFLSLVHGK------KDTDSGVYWCVARNELGFARSKNATLDV 225
                                D+G Y C+A N +GF+   +A L V
Sbjct: 281 AGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHH-SAWLVV 325

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 74.7 bits (183), Expect = 2e-17
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 7/106 (6%)

Query: 127 DGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP--RIEWYKDGSLV---SAEIGSHRI 181
           D +  P+IT  P +         +  C A    +      W  D   +     E  +H  
Sbjct: 6   DDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLR 65

Query: 182 LLPAGSLFFLSLVHGK--KDTDSGVYWCVARNELGFARSKNATLDV 225
                 + + +++  +  + T  G Y CV  N  G + S  A L +
Sbjct: 66  AQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 73.6 bits (181), Expect = 3e-17
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 9/101 (8%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
                   S +V   +   L C+        I W +DG  ++    S+R  +    +   
Sbjct: 4   GSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAE---SNRTRITGEEVEVQ 59

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTA 232
             V      DSG+Y CV  +  G   +   +++V+  + + 
Sbjct: 60  DSVP----ADSGLYACVTSSPSGSD-TTYFSVNVSDALPSG 95

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 77.9 bits (192), Expect = 4e-17
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P   E   +  V      TL CK  G+P+P ++WY+ G  + A+   +RI    G    L
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            +     D D+ VY   A N+ G   S  A+L+V
Sbjct: 65  IIASVTDD-DATVYQVRATNQGGSV-SGTASLEV 96

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 75.6 bits (186), Expect = 2e-16
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
            +P+  E   +    R E  ++     G P+P I W K   L+  +   H  ++   S  
Sbjct: 103 HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLI--DNNGHYQVIVTRSFT 160

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            L   +G +  D+G Y   A+N  G    K   LDVA  
Sbjct: 161 SLVFPNGVERKDAGFYVVCAKNRFGID-QKTVELDVADV 198

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 76.5 bits (188), Expect = 4e-17
 Identities = 31/103 (30%), Positives = 38/103 (36%), Gaps = 11/103 (10%)

Query: 132 PRITE----HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLV--SAEIGSHRILLPA 185
           P  T           VP        C A G P P I W K+G        IG  ++    
Sbjct: 12  PYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ 71

Query: 186 GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            SL   S+V     +D G Y CV  N+ G  R    TLDV  +
Sbjct: 72  WSLVMESVVP----SDRGNYTCVVENKFGSIRQ-TYTLDVLER 109

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 68.0 bits (166), Expect = 5e-14
 Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 10/103 (9%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEI---GSHRILLPAGSL 188
                 PA+           +CK     +P I+W K   +  +++   G+  + +    +
Sbjct: 115 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWI 174

Query: 189 FFLSLVHGK------KDTDSGVYWCVARNELGFARSKNATLDV 225
                   +       + D G Y C A N +G A      L V
Sbjct: 175 SESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKA-FWLSV 216

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 72.7 bits (179), Expect = 4e-17
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 4/94 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P+I        +       L     G P+P   W    S  +       ++    S   +
Sbjct: 3   PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAAL--APELLVDAKSSTTSI 60

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                K+  DSG Y    +NELG   +    + V
Sbjct: 61  FFPSAKRA-DSGNYKLKVKNELGEDEA-IFEVIV 92

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 74.2 bits (182), Expect = 2e-16
 Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 8/96 (8%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
             I            +  TL C A G P P I W K    + +   +  I      L   
Sbjct: 114 ADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPS---TAEISTSGAVLKIF 170

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
           ++    +  D G+Y C A N  G  + + A + V  
Sbjct: 171 NI----QLEDEGIYECEAENIRGKDKHQ-ARIYVQA 201

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 69.9 bits (171), Expect = 7e-15
 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 7/103 (6%)

Query: 126 GDGYRVPRITEHPASAVVPRHEPTTLNCKA-DGYPEPR-IEWYKDGSLVSAEIGSHR-IL 182
           G GY  P   E      V   +   L C     +P+     W  +   V   +   R + 
Sbjct: 3   GSGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVS 62

Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
              G+L+  ++    + +D G Y C   +        +  + +
Sbjct: 63  QTNGNLYIANV----EASDKGNYSCFVSSPSITKSVFSKFIPL 101

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 71.2 bits (175), Expect = 2e-16
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 7/98 (7%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRI-LLPAGSLF 189
             ++     AV          CK + Y +  ++ WY     +     S +  +     + 
Sbjct: 2   AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLEN---SEKYEITYEDGVA 58

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
            L +    K  D G Y C   N+ G   S  A L V G
Sbjct: 59  ILYVKDITKL-DDGTYRCKVVNDYGEDSSY-AELFVKG 94

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 70.9 bits (174), Expect = 3e-16
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 20/106 (18%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPA------ 185
           P IT               +     G P+P ++W+ +G++++    S  I          
Sbjct: 5   PTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNE---SKYICTKIHVTNHT 58

Query: 186 ---GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
              G L   +  H     ++G Y  +A+NE G    K  +    G 
Sbjct: 59  EYHGCLQLDNPTH----MNNGDYTLIAKNEYGKD-EKQISAHFMGW 99

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 74.9 bits (184), Expect = 5e-16
 Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 3/120 (2%)

Query: 106 KGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEW 165
            G    + +     L      +  R   +   P    +   +   L C   G P P + W
Sbjct: 197 SGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSW 256

Query: 166 YKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            K+   ++       +   AG   + ++       DSG Y  V +N+ G   S + T+ V
Sbjct: 257 LKNEKALA-SDDHCNLKFEAGRTAYFTINGVSTA-DSGKYGLVVKNKYGSETS-DFTVSV 313

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 74.2 bits (182), Expect = 8e-16
 Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 8/98 (8%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGY-PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           P   E+  S  V       L CK      E  I WYKD   +S      +     G    
Sbjct: 8   PHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV---DEKHDFKDGI-CT 62

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
           L +    K  D+G+Y  + +++ G  +S+   L     
Sbjct: 63  LLITEFSKK-DAGIYEVILKDDRGKDKSR-LKLVDEAF 98

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 58.0 bits (140), Expect = 3e-10
 Identities = 13/112 (11%), Positives = 28/112 (25%), Gaps = 16/112 (14%)

Query: 131 VPRITEHPASAVVPRHEPTTLNCKADG----------YPEPRIEWYKDGSLVSAEIGSHR 180
              +       +        +   A+G            + ++ W  +GS +     S R
Sbjct: 98  FKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY---SDR 154

Query: 181 I-LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST 231
           +     G   +L +     + D G Y     +     +     L        
Sbjct: 155 VKTGVTGEQIWLQINEPTPN-DKGKYVMELFDGKTGHQK-TVDLSGQAYDEA 204

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 72.4 bits (177), Expect = 5e-16
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGS----HRILL 183
           +  PR+    +S  +   E   L CK++  P      WYK        + +       + 
Sbjct: 81  HGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVS 140

Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            +     L + +   + D G Y C   +  G  ++   TL V
Sbjct: 141 SSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAI-ITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 52.0 bits (124), Expect = 1e-08
 Identities = 17/90 (18%), Positives = 23/90 (25%), Gaps = 16/90 (17%)

Query: 141 AVVPRHEPTTLNCKADGYPEPRIE--WYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKK 198
            V        L C  +          W K G ++  +       LP     F        
Sbjct: 8   TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA------LPGQKTEFKVD----S 57

Query: 199 DTDSGVYWCVARNELGFARSKNATLDVAGK 228
           D   G Y CV   E        A + + G 
Sbjct: 58  DDQWGEYSCVFLPE----PMGTANIQLHGP 83

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 74.0 bits (181), Expect = 8e-16
 Identities = 23/92 (25%), Positives = 30/92 (32%), Gaps = 7/92 (7%)

Query: 136 EHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSL 193
           E     V   +E     C  +       I WYKD S        + RI      L+F+  
Sbjct: 10  EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPA 69

Query: 194 VHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                  DSG Y+CV RN     R    +   
Sbjct: 70  KVE----DSGHYYCVVRNSSYCLRI-KISAKF 96

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 58.2 bits (140), Expect = 3e-10
 Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 12/103 (11%)

Query: 132 PRITEHPASAV-VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE----------IGSHR 180
           P I       + V       L C   G       W  +GS++  +          + +  
Sbjct: 209 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 268

Query: 181 ILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL 223
               +  +  L++   +       + C A+N  G   +    L
Sbjct: 269 NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGID-AAYIQL 310

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 55.5 bits (133), Expect = 2e-09
 Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 15/108 (13%)

Query: 132 PRITEHPASAVVPRHEPTTLNC------KADGYPEPRIEWYKDGSLVSAEIGSHRILLPA 185
               +      +P      L C      K +    P+++WYKD   +  +  +       
Sbjct: 104 CYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD--NIHFSGVK 161

Query: 186 GSLFFLSLVHGKKDTDSGVYWCVARNELG---FARSKNATLDVAGKIS 230
             L  +++     +   G Y C A        +  ++        +  
Sbjct: 162 DRLIVMNV----AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENK 205

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 68.7 bits (168), Expect = 2e-15
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
             +     S +V   +   L C+        I W +DG  +     S+R  +    +   
Sbjct: 10  WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVE---SNRTRITGEEVEVR 65

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             +      DSG+Y CV  +  G   +   +++V
Sbjct: 66  DSIP----ADSGLYACVTSSPSGSD-TTYFSVNV 94

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 68.9 bits (169), Expect = 2e-15
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 4/97 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P+I + P    V   E   L  K  G       W K    +      H  +  + +   L
Sbjct: 8   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQE--SEHMKVENSENGSKL 65

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
           +++  +++   G Y  +  N+LG  ++    L V  K
Sbjct: 66  TILAARQE-HCGCYTLLVENKLGSRQA-QVNLTVVDK 100

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 72.9 bits (179), Expect = 3e-15
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 2/97 (2%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P+   +          P  ++C     P   I W +D  ++ A+  ++      G    L
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMIL 160

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
             +    D D G Y C A N +G    +   L +A  
Sbjct: 161 E-IAPTSDNDFGRYNCTATNHIGTR-FQEYILALADV 195

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 69.8 bits (171), Expect = 4e-14
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 14/102 (13%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI--------LL 183
           P I +   +     +   TL C A+G P P I W +     +   G   +          
Sbjct: 2   PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            + SL    +    K +DSG Y C A + +G    K+  LD+
Sbjct: 61  GSSSLHIKDV----KLSDSGRYDCEAASRIGGH-QKSMYLDI 97

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 71.6 bits (175), Expect = 4e-15
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 19/96 (19%)

Query: 132 PRITEH--PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
           PR+ E   P +   P +   T  C+A G P P ++  KDG+            LP G   
Sbjct: 184 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP----------LPIGESV 233

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            ++          G Y C AR+  G   ++  T++V
Sbjct: 234 TVTR------DLEGTYLCRARSTQG-EVTREVTVNV 262

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 18/100 (18%)

Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
           Y  P          V      T+ C+A     PR +   +G          ++LL A   
Sbjct: 96  YSFPAPNVILTKPEVSEGTEVTVKCEA----HPRAKVTLNGVPAQPLGPRAQLLLKA--- 148

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELG---FARSKNATLDV 225
                     + +   + C A  E+      +++   L V
Sbjct: 149 --------TPEDNGRSFSCSATLEVAGQLIHKNQTRELRV 180

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 68.1 bits (166), Expect = 9e-15
 Identities = 24/125 (19%), Positives = 37/125 (29%), Gaps = 19/125 (15%)

Query: 123 GVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRIL 182
           G+   G  +    + P S          L+C+A G P P I+W+ +G             
Sbjct: 13  GLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQ----GPNDICSQ 68

Query: 183 LPAGSLFFLSLVHGKKDT--------------DSGVYWCVARNELGFARSKNATLDVAGK 228
           L  G+      +H                   D+G Y C A N+            V   
Sbjct: 69  LWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRN-HLTRAPRVKWV 127

Query: 229 ISTAT 233
            + A 
Sbjct: 128 RAQAV 132

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 67.1 bits (164), Expect = 1e-14
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 5/98 (5%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           PR+       +        +     G P P + W  +G  +      H      G +   
Sbjct: 9   PRVVSLEEPELR---LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 65

Query: 192 SLV-HGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            L+ +     ++G Y  +A+N LG A ++        +
Sbjct: 66  CLLFNKPTHYNNGNYTLIAKNPLGTA-NQTINGHFLKE 102

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 71.4 bits (174), Expect = 1e-14
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 19/96 (19%)

Query: 132 PRITE--HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
           PR+ E   P +   P +   T  C+A G P P ++  KDG+            LP G   
Sbjct: 369 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP----------LPIGESV 418

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            ++          G Y C AR+  G   ++  T++V
Sbjct: 419 TVTR------DLEGTYLCRARSTQGEV-TREVTVNV 447

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 48.7 bits (115), Expect = 6e-07
 Identities = 11/92 (11%), Positives = 24/92 (26%), Gaps = 11/92 (11%)

Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSL 193
            +  P+  ++PR     + C         +       L        + LL  G+   +  
Sbjct: 2   TSVSPSKVILPRGGSVLVTCSTSCDQPMLLGIET--PL------PKKELLLPGNNRKVYE 53

Query: 194 VHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           +      +     C +        +    L V
Sbjct: 54  LSNV--QEDSQPMCYSNCP-DGQSTAKTFLTV 82

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 16/100 (16%), Positives = 27/100 (27%), Gaps = 18/100 (18%)

Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
           Y  P          V      T+ C+A    +  +                    P G  
Sbjct: 281 YSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQ--------------PLGPR 326

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELG---FARSKNATLDV 225
             L L    +D +   + C A  E+      +++   L V
Sbjct: 327 AQLLLKATPED-NGRSFSCSATLEVAGQLIHKNQTRELRV 365

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 47.6 bits (112), Expect = 1e-06
 Identities = 18/119 (15%), Positives = 33/119 (27%), Gaps = 24/119 (20%)

Query: 99  CNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADG- 157
           C +        L  Y  P                R+   P  +  P  +  TL C+ +G 
Sbjct: 69  CPDGQSTAKTFLTVYWTP---------------ERVELAPLPSWQPVGKNLTLRCQVEGG 113

Query: 158 YPEPR--IEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG 214
            P     +   +    +  E     +  PA     + +    +D     + C    +L 
Sbjct: 114 APRANLTVVLLRGEKELKRE---PAVGEPAEVTTTVLVR---RDHHGANFSCRTELDLR 166

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 13/113 (11%)

Query: 117 SLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADG---YPEPRIEWYKDGSLVS 173
           S P            P++       V+      T+ C  DG     E ++        ++
Sbjct: 177 SAPYQLQTFVLPATPPQLVSPR---VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN 233

Query: 174 AEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA-RSKNATLDV 225
             +        A +   ++        D G         LG   +    T+ +
Sbjct: 234 PTVTYGNDSFSAKASVSVTA------EDEGTQRLTCAVILGNQSQETLQTVTI 280

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 67.9 bits (166), Expect = 4e-14
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 3/97 (3%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P++ + P +          + C+   YP   I W++DG L+ +   S+  +    S  +L
Sbjct: 20  PKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYL 78

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
             V    + D G Y C A N +G   S    L  A  
Sbjct: 79  E-VTPDSENDFGNYNCTAVNRIGQE-SLEFILVQADT 113

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 68.8 bits (168), Expect = 5e-14
 Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 9/106 (8%)

Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-- 181
           V+      P+I   P+  V  R E   + C A           K G        +     
Sbjct: 179 VNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQD 238

Query: 182 --LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                  +L   ++       D+G+Y CVA N++G   +      V
Sbjct: 239 NYYKKVRALSLNAV----DFQDAGIYSCVASNDVGTR-TATMNFQV 279

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 65.4 bits (159), Expect = 9e-13
 Identities = 21/96 (21%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P I       VV   E  TL C ++G     +EW    S       +     P  +L   
Sbjct: 5   PVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPIS----PYWTLDPESPGSTLTTR 56

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
           +        ++G Y C    +   A S    L V  
Sbjct: 57  NA----TFKNTGTYRCTELEDPM-AGSTTIHLYVKD 87

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 60.7 bits (147), Expect = 4e-11
 Identities = 13/100 (13%), Positives = 22/100 (22%), Gaps = 6/100 (6%)

Query: 134 ITEHPASAVVPRHEPTTLNCKADGY-PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLS 192
                    V   +   L C       +  +   ++G        +     P        
Sbjct: 92  WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLR-KTVYFFSPWRGF---- 146

Query: 193 LVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTA 232
           ++   K  DS  Y C        + S    L V       
Sbjct: 147 IIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEP 186

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 66.2 bits (161), Expect = 2e-13
 Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 7/95 (7%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           P  T               L C+  +G    + EW K     +         + +  +  
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMP-TPWLAEMTSPVISV 180

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            +         SG Y C  +N +G        LDV
Sbjct: 181 KNA----SSEYSGTYSCTVQNRVGSD-QCMLRLDV 210

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 47.8 bits (113), Expect = 6e-07
 Identities = 26/126 (20%), Positives = 35/126 (27%), Gaps = 34/126 (26%)

Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEP----RIEWYKDGSLVS---------------- 173
           IT         + E   L CK    PE      IEW    S                   
Sbjct: 3   ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYD 62

Query: 174 ---------AEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLD 224
                        S+ +     S+   +L    + +D G Y C  +   G A +K   L 
Sbjct: 63  NYYPDLKGRVHFTSNDVKSGDASINVTNL----QLSDIGTYQCKVKKAPGVA-NKKFLLT 117

Query: 225 VAGKIS 230
           V  K S
Sbjct: 118 VLVKPS 123

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 63.3 bits (154), Expect = 2e-13
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 11/96 (11%)

Query: 132 PRITEH-PASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
             +T     S  V      T  C A    P   + W +  +         R +   G L 
Sbjct: 10  IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHN----GKLPSRAMDFNGILT 65

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             ++    + +D+G Y C   N         ATL V
Sbjct: 66  IRNV----QPSDAGTYVCTGSNMFAMD-QGTATLHV 96

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 67.5 bits (164), Expect = 2e-13
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P +     +A V   +   L C+ +G    +  W       SA +      LP+  L   
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGG-LPSLGLTLA 217

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           ++     D +     C A N++G A   +  ++V
Sbjct: 218 NVTS---DLNRKNVTCWAENDVGRA-EVSVQVNV 247

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 60.1 bits (145), Expect = 7e-11
 Identities = 17/102 (16%), Positives = 28/102 (27%), Gaps = 13/102 (12%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLV--------SAEIGSHRILL 183
                              +    DG P P + W  +GS++             +    +
Sbjct: 247 VSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 306

Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             G L      H     ++G Y  +A N  G A S +     
Sbjct: 307 RHGCLRLNQPTH----VNNGNYTLLAANPFGQA-SASIMAAF 343

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 66.9 bits (163), Expect = 3e-13
 Identities = 16/103 (15%), Positives = 28/103 (27%), Gaps = 4/103 (3%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P   E   +            C     P+    W KD             +   G+   +
Sbjct: 4   PFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTED--SPRLEVESKGNKTKM 60

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTATD 234
           +      D D G+Y C   +  G A S     +   ++   + 
Sbjct: 61  TFKDLGMD-DLGIYSCDVTDTDGIASSYLIDEEELKRLLALSH 102

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 62.7 bits (152), Expect = 8e-12
 Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 8/97 (8%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGY-PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           P   E   S  V       L CK      E  I WYKD   +S +   H       +L  
Sbjct: 223 PHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD-EKHDFKDGICTL-- 278

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
             L+      D+G+Y  + +++ G  +S+   L    
Sbjct: 279 --LITEFSKKDAGIYEVILKDDRGKDKSR-LKLVDEA 312

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 57.3 bits (138), Expect = 6e-10
 Identities = 9/127 (7%), Positives = 34/127 (26%), Gaps = 5/127 (3%)

Query: 114 HPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLV 172
               L     +  +        +   +  +          +A+      ++ +  +   +
Sbjct: 90  DEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEI 149

Query: 173 SAEIGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST 231
             E   +++ +     +  + +   + + D G Y    ++      S    L        
Sbjct: 150 F-EGPKYKMHIDRNTGIIEMFMEKLQDE-DEGTYTFQLQDGKATNHS-TVVLVGDVFKKL 206

Query: 232 ATDCSFK 238
             +  F+
Sbjct: 207 QKEAEFQ 213

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 66.1 bits (161), Expect = 3e-13
 Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 17/95 (17%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
             IT  P    V + E  TL+C+    P     +W+ +G+       S+RI         
Sbjct: 2   AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRI--------- 52

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                     DSG Y C         RS    L++
Sbjct: 53  ----TSASVNDSGEYRCQRGLS---GRSDPIQLEI 80

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 59.5 bits (144), Expect = 8e-11
 Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 14/103 (13%)

Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRIL 182
           +  + +R   + +  +  V    EP  L C A        + +Y++G        +  + 
Sbjct: 76  IQLEIHRGWLLLQVSSR-VFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLT 134

Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           +   ++           + +G Y C    +  +  S   ++ V
Sbjct: 135 ILKTNI-----------SHNGTYHCSGMGKHRY-TSAGISVTV 165

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 19/106 (17%)

Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEP-----RIEWYKDGSLVSAEIGSHRILL 183
           +  P +     ++ +      TL+C+     +         +Y     +     S     
Sbjct: 169 FPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTS----- 222

Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA--RSKNATLDVAG 227
                  L+        DSG+YWC A  E G    RS    L V G
Sbjct: 223 --SEYQILTARRE----DSGLYWCEAATEDGNVLKRSPELELQVLG 262

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 63.4 bits (154), Expect = 3e-13
 Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 16/105 (15%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA--------EIGSHRILL 183
           P   +      V  H    +    DG P P + W  +GS+++            +    +
Sbjct: 4   PASVQ--LHTAVEMHH-WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60

Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
             G L      H     ++G Y  +A N  G A S +        
Sbjct: 61  RHGCLRLNQPTH----VNNGNYTLLAANPFGQA-SASIMAAFMDN 100

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 65.0 bits (158), Expect = 5e-13
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 1/97 (1%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
                     V P      L C+A+GYP+  + W      V +   +         LF +
Sbjct: 117 YNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNV 176

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
           +       T + +++C  R       +  A L +   
Sbjct: 177 TSTLRINTTTNEIFYCTFRRLDP-EENHTAELVIPEL 212

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 66.6 bits (162), Expect = 5e-13
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 15/93 (16%)

Query: 122 PGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI 181
           P V       P I    +  +V   +   L C   G+    ++W  +    + E   +  
Sbjct: 27  PSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGF----VKWTFEILDETNENKQNEW 82

Query: 182 LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG 214
           +                 T++G Y C  ++ L 
Sbjct: 83  ITEKAEA-----------TNTGKYTCTNKHGLS 104

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 66.6 bits (162), Expect = 6e-13
 Identities = 25/106 (23%), Positives = 32/106 (30%), Gaps = 16/106 (15%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRIL--------- 182
           P I          R     L C A G+PEP I+WY           S   +         
Sbjct: 413 PEILT------YDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSG 466

Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            P G L   S +       +G   C A N++G   S        G 
Sbjct: 467 PPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKT-SAYFNFAFKGN 511

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 66.6 bits (162), Expect = 6e-13
 Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 4/108 (3%)

Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRIL 182
           V      VP ++   AS ++   E  T+ C            W ++ S    +   +   
Sbjct: 204 VRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWH 263

Query: 183 LPAGSLFFLSL--VHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
               +    +   +   +  DSGV+ C A N  G A +   TL+V  K
Sbjct: 264 HGDFNYERQATLTISSARVNDSGVFMCYANNTFGSA-NVTTTLEVVDK 310

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 66.6 bits (162), Expect = 6e-13
 Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 13/109 (11%)

Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPR-IEWYKDGSLVSAE------I 176
           V   G+ +        +  V   E   L  + + +P+P   +W       + +       
Sbjct: 307 VVDKGF-INIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKS 365

Query: 177 GSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            +   +     L    L    K T+ G Y  +  N    A +    + V
Sbjct: 366 ENESNIRYVSELHLTRL----KGTEGGTYTFLVSNSDVNA-AIAFNVYV 409

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 57.4 bits (138), Expect = 8e-10
 Identities = 15/101 (14%), Positives = 22/101 (21%), Gaps = 4/101 (3%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
            ++     S        T + C     PE      K             I  P   +   
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPLTD-PEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIK 173

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTA 232
           S+   K+        C    E     S+   L V       
Sbjct: 174 SV---KRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAV 211

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 63.7 bits (155), Expect = 7e-13
 Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 17/95 (17%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
             +   P    V + +  TL C+    PE   I+W+ +G+L+                  
Sbjct: 5   AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYR--------- 55

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                   + DSG Y C        + S    L V
Sbjct: 56  ----FKANNNDSGEYTCQTGQT---SLSDPVHLTV 83

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 62.1 bits (151), Expect = 3e-12
 Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 13/98 (13%)

Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGS 187
                + + P        E   L C +    P  ++ ++++G             +P  +
Sbjct: 84  LFEWLVLQTP-HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQAN 142

Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                       + SG Y C          SK  T+ V
Sbjct: 143 H-----------SHSGDYHCTGNIGYTLFSSKPVTITV 169

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 62.4 bits (152), Expect = 7e-13
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 14/103 (13%)

Query: 132 PRIT---EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL---PA 185
           P+I        + +    E   L     G P P++ W K G+     + + R+ +     
Sbjct: 22  PKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGA----PLDTSRVHVRTSDF 77

Query: 186 GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            ++FF+        +DSG Y    + E     +    + V  K
Sbjct: 78  DTVFFVRQA---ARSDSGEYELSVQIENMKD-TATIRIRVVEK 116

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 63.8 bits (155), Expect = 7e-13
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 17/95 (17%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           P+++ +P    + + E  TL C  + + E    +W+ +GSL      S  I         
Sbjct: 5   PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNI--------- 55

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                  K  DSG Y C  +       S+   L+V
Sbjct: 56  ----VNAKFEDSGEYKCQHQQV---NESEPVYLEV 83

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 62.6 bits (152), Expect = 2e-12
 Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 13/103 (12%)

Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRIL 182
           V+ + +    + +  A  V+   +P  L C     +   ++ +YKDG  +     +H I 
Sbjct: 79  VYLEVFSDWLLLQASAEVVME-GQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNIS 137

Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           +   ++            DSG Y+C  +       S+   + V
Sbjct: 138 ITNATV-----------EDSGTYYCTGKVWQLDYESEPLNITV 169

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.3 bits (162), Expect = 8e-13
 Identities = 31/96 (32%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 132 PRITEHPASAV-VPRHEPTTLNCKADGYPEPRIEWYKD-GSLVSAEIGSHRILLPAGSLF 189
            RI +  A  V V         C+ADG P P I W      LVSA+      + P G+L 
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLE 444

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                   +  D+G Y C+A N  G   S  A L V
Sbjct: 445 VRYA----QVQDNGTYLCIAANAGGND-SMPAHLHV 475

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 65.1 bits (158), Expect = 1e-12
 Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 3/104 (2%)

Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL 183
           V+        ++ +    VV + E  TL C   G      EW          +      L
Sbjct: 174 VYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFL 233

Query: 184 PAGSLFFLS--LVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                   S   +   +  DSG Y C     +   +     +++
Sbjct: 234 LDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQD-EKAINI 276

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 55.9 bits (134), Expect = 2e-09
 Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 8/92 (8%)

Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSL 193
           +T      V+       L C         + W +       E+   +    +  L   +L
Sbjct: 3   VTPPGPELVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNL 58

Query: 194 VHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                  D+G Y+C   +  G    +   L +
Sbjct: 59  TG----LDTGEYFCTHNDSRGLETDERKRLYI 86

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 10/104 (9%), Positives = 24/104 (23%), Gaps = 15/104 (14%)

Query: 124 VHGDGYRVPRITEHPASAVVPRHE--PTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI 181
           +      V  +        +   E    T+ C+    P+  +  ++    V+  +     
Sbjct: 86  IFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVALPVPYDH- 143

Query: 182 LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                   F  +       +   Y C          S    +  
Sbjct: 144 -----QRGFSGI------FEDRSYICKTTIGDREVDSDAYYVYR 176

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 62.0 bits (151), Expect = 1e-12
 Identities = 22/96 (22%), Positives = 31/96 (32%), Gaps = 7/96 (7%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
           R   I E      V      T  C+        + W+ D + + A    + I    G   
Sbjct: 12  RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHAN-ELNEIDAQPGGYH 70

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            L+L       DSG  +  A    G  R+  A L V
Sbjct: 71  VLTLRQLALK-DSGTIYFEA----GDQRAS-AALRV 100

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 62.2 bits (151), Expect = 1e-12
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 7/101 (6%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSH----RILLPAG 186
           P I+    +      E   + C     P P RI W    +++ +          I    G
Sbjct: 15  PIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEG 73

Query: 187 SLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
            +  L++ +  +     +Y C A N  G   ++   L   G
Sbjct: 74  VISTLTISNIVRADFQTIYNCTAWNSFGSD-TEIIRLKEQG 113

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 63.8 bits (155), Expect = 3e-12
 Identities = 22/103 (21%), Positives = 31/103 (30%), Gaps = 3/103 (2%)

Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL 183
           V       P +T  PA  V  R E   + C A         + +  +     I       
Sbjct: 179 VQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNT-KLAIPQQSDFH 237

Query: 184 PAGSLFFLSL-VHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                  L+L +       +G Y CVA N  G   S +    V
Sbjct: 238 NNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKH-STSMFFRV 279

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 60.7 bits (147), Expect = 3e-11
 Identities = 21/94 (22%), Positives = 28/94 (29%), Gaps = 13/94 (13%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P I       VV      TL C  +G     +EW             H  L   GS   L
Sbjct: 5   PVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGP-------PSPHWTLYSDGSSSIL 53

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           S  +     ++G Y C    +     +    L V
Sbjct: 54  STNNATFQ-NTGTYRCTEPGDPLGGSA-AIHLYV 85

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 53.4 bits (128), Expect = 1e-08
 Identities = 17/98 (17%), Positives = 24/98 (24%), Gaps = 6/98 (6%)

Query: 134 ITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLS 192
                   VV   +   L C   D   E  +   +          ++    P        
Sbjct: 92  WNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRG-RPLMRHTNYSFSPWHGF---- 146

Query: 193 LVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIS 230
            +H  K   S  Y C A        S +  L V   I 
Sbjct: 147 TIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIP 184

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 64.0 bits (155), Expect = 3e-12
 Identities = 16/98 (16%), Positives = 24/98 (24%), Gaps = 11/98 (11%)

Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGS 187
           Y          +         TL C A   PEP    W      +         +     
Sbjct: 215 YPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPP-----FAVAQGAQ 269

Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           L    +        +    C   N LG  ++   T+ V
Sbjct: 270 LLIRPV----DKPINTTLICNVTNALGARQA-ELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 59.0 bits (142), Expect = 2e-10
 Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 6/98 (6%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           P+ T       +         C +  G P  +I W+ D   +     S      +G++  
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNT--SQVPGFLSGTVTV 175

Query: 191 LSL--VHGKKDTDSGVYWCVARNELGFA-RSKNATLDV 225
            SL  +      D     C   +E     +     L V
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTV 213

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 52.4 bits (125), Expect = 3e-08
 Identities = 18/112 (16%), Positives = 32/112 (28%), Gaps = 20/112 (17%)

Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEP-----RIEWYKDGSLVSAEI---GSHRILLPA 185
           + + P        +  TL C             ++ W + G   S  +           +
Sbjct: 3   VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62

Query: 186 GSLFFLSLVHGKKD------------TDSGVYWCVARNELGFARSKNATLDV 225
             L F++   G +              D G Y C+       +RS +  L V
Sbjct: 63  KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.4 bits (157), Expect = 3e-12
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK-DGSLVSAEIGSHRI-LLPAGSLF 189
           P I E PA   V       L C+A       + W   +G++++      RI +L  G+L 
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
           F ++       D+G+Y C+  N +G   + +ATL+V G
Sbjct: 401 FTNV----TVQDTGMYTCMVSNSVGNT-TASATLNVTG 433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.4 bits (157), Expect = 3e-12
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD-GSLVSAEIGSHRI-LLPAGSLF 189
           P I + P    +       L C+    P   ++W    G+++S      RI +L  G+L 
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLN 410

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           F  +      +D+GVY C+  N  G + + +A L+V
Sbjct: 411 FSHV----LLSDTGVYTCMVTNVAGNS-NASAYLNV 441

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 62.4 bits (151), Expect = 5e-12
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 6/97 (6%)

Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
             V +      +  V   +  TL C ++      I+W  +   +   +     L    S+
Sbjct: 108 QPVTQPFLQVTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQ--LTERMTLSQNNSI 164

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             +  +   K  D+G Y C   N +   RS +  LD+
Sbjct: 165 LRIDPI---KREDAGEYQCEISNPVSVRRSNSIKLDI 198

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 49.7 bits (118), Expect = 1e-07
 Identities = 18/114 (15%), Positives = 26/114 (22%), Gaps = 21/114 (18%)

Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGS-LVSAEIGSHRI----------- 181
           +T       V       L             WYK  +  +  EI                
Sbjct: 2   VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAY 61

Query: 182 -----LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIS 230
                +   GSL F  +       D GVY     +E            V   ++
Sbjct: 62  SGREIIYSNGSLLFQMI----TMKDMGVYTLDMTDENYRRTQATVRFHVHQPVT 111

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 63.6 bits (154), Expect = 5e-12
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 11/96 (11%)

Query: 132 PRIT-EHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLF 189
           P +T E        +     L CKAD  P      W      +        +     +LF
Sbjct: 232 PEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPK-----GVEAQNRTLF 286

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           F   +     + +G Y C A N +G  RS    +++
Sbjct: 287 FKGPI---NYSLAGTYICEATNPIG-TRSGQVEVNI 318

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 52.1 bits (124), Expect = 4e-08
 Identities = 17/134 (12%), Positives = 35/134 (26%), Gaps = 18/134 (13%)

Query: 95  RFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCK 154
            F+       +  L L     P+  +                   +      +     C 
Sbjct: 110 EFATFPTGNRESQLNLTVMAKPTNWIEG-----------TQAVLRAKKGQDDKVLVATCT 158

Query: 155 -ADGYPEPRIEWYKDGS--LVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN 211
            A+G P   + W           EI +    +   S + L      ++       C+   
Sbjct: 159 SANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPS---REAHQQSLACIVNY 215

Query: 212 ELGFARSKNATLDV 225
            +     ++ TL+V
Sbjct: 216 HMD-RFKESLTLNV 228

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 16/117 (13%), Positives = 29/117 (24%), Gaps = 19/117 (16%)

Query: 128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP----RIEWYKDGSLVSAEI------- 176
           G    ++ +   S          L+C            ++ W K  +     +       
Sbjct: 11  GRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSM 70

Query: 177 -------GSHRILLPAGSLFFLSL-VHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                     R+     S    ++ +   +  D GVY C         R     L V
Sbjct: 71  GVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTV 127

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 59.6 bits (145), Expect = 5e-12
 Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 4/86 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
             I +      V   E   L C+      P + W KD   +         ++  G++  L
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRK--SQKYDVVCEGTMAML 65

Query: 192 SLVHGKKDTDSGVYWCVARNELGFAR 217
            ++ G    D+G Y C        A 
Sbjct: 66  -VIRGASLKDAGEYTCEVEASKSTAS 90

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 60.0 bits (145), Expect = 6e-12
 Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 10/110 (9%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYP---EPRIEWYKDGSLVSAEIGSHRILL----- 183
               E P    V   E  T   K        +P I+W+K   +  A      + L     
Sbjct: 8   ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFE 67

Query: 184 PAGSLFFLSLVHGK-KDTDSGVYWCVARNELGFARSKNATLDVAGKISTA 232
               ++   +   K KD  +G Y C    +  F  S +  L+V     T 
Sbjct: 68  RHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFD-SCSFDLEVHESTGTT 116

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 59.0 bits (143), Expect = 8e-12
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSL 188
              +                TL+C+     +  + WYKDG  +S+   S ++ +   G  
Sbjct: 10  VFAKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSS---SSKVRVEAVGCT 65

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
             L +    +  ++G Y C A  +       +  L VAG+
Sbjct: 66  RRLVVQQAGQA-EAGEYSCEAGGQ-----QLSFRLQVAGQ 99

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 61.5 bits (149), Expect = 9e-12
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 8/97 (8%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGY-PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           P   E   S  V       L CK      E  I WYKD   +S +   H       +L  
Sbjct: 118 PHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD-EKHDFKDGICTLLI 175

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
                     D+G+Y  + +++ G  +S+   L    
Sbjct: 176 TEFSK----KDAGIYEVILKDDRGKDKSR-LKLVDEA 207

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 57.6 bits (139), Expect = 2e-10
 Identities = 8/89 (8%), Positives = 27/89 (30%), Gaps = 2/89 (2%)

Query: 131 VPRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
           +   T+   +  +          +A       ++ +  +   +  E   +++ +   +  
Sbjct: 2   IDPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIF-EGPKYKMHIDRNTGI 60

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARS 218
               +   +D D G Y    ++      S
Sbjct: 61  IEMFMEKLQDEDEGTYTFQLQDGKATNHS 89

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 62.6 bits (151), Expect = 9e-12
 Identities = 20/112 (17%), Positives = 33/112 (29%), Gaps = 22/112 (19%)

Query: 136 EHPASAVVPRHEPTTLNCKAD-----------GYPEPRIEWYKDGS------LVSAEIGS 178
           +      V   EP  + C                    + WY           ++  +  
Sbjct: 12  DTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPE 71

Query: 179 HRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIS 230
           +RI      L+F          D+G Y C+ RN    ++     L+V  K S
Sbjct: 72  NRISKEKDVLWFRPT----LLNDTGNYTCMLRNTTYCSKV-AFPLEVVQKDS 118

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 52.2 bits (124), Expect = 3e-08
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 10/82 (12%)

Query: 150 TLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA 209
            ++       +P I WY     +      + ++    +L FL        +++G Y CV 
Sbjct: 144 NVDGYFPSSVKPTITWYMGCYKIQ---NFNNVIPEGMNLSFLIA----LISNNGNYTCVV 196

Query: 210 RNEL---GFARSKNATLDVAGK 228
                   F  ++  T+ V G 
Sbjct: 197 TYPENGRTFHLTRTLTVKVVGS 218

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 48.7 bits (115), Expect = 4e-07
 Identities = 21/114 (18%), Positives = 29/114 (25%), Gaps = 16/114 (14%)

Query: 127 DGYRVPRITEHPASAV---VPRHEPTTLNCKA----DGYPEPRIEWYKDGSLVS------ 173
               VP +   P   V       E   + C             + W  DG          
Sbjct: 219 PKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDV 278

Query: 174 --AEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
              E  SH           LS+     +     Y C AR+  G   +K A +  
Sbjct: 279 TINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEV-AKAAKVKQ 331

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 61.9 bits (149), Expect = 1e-11
 Identities = 16/120 (13%), Positives = 27/120 (22%), Gaps = 19/120 (15%)

Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL 183
           V G                V      T+ C         + WY   +            L
Sbjct: 129 VTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPL 188

Query: 184 PAGSLFFLSLVHGK------------------KDTDSGVYWCVARNELGFARSKNATLDV 225
              + F ++    +                  K TD+G  WC      G     + +  +
Sbjct: 189 ANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGEL-DADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 16/113 (14%), Positives = 21/113 (18%), Gaps = 29/113 (25%)

Query: 131 VPRITEHPASAVVPRHEPTTLNCK---ADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGS 187
           +  +        V       L C    A+    P I W K  S   +           G 
Sbjct: 2   IMTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGE 61

Query: 188 LFFLSLVHGKKD--------------------------TDSGVYWCVARNELG 214
                     K+                           D G YWC       
Sbjct: 62  GLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSI 114

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 58.9 bits (142), Expect = 1e-11
 Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 10/103 (9%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYP---EPRIEWYKDGSLVSAEIGSHRILL----- 183
                 P    V      T + +  G      P ++W+K   +  +      + L     
Sbjct: 5   GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYD 64

Query: 184 PAGSLFFLSLVHGK-KDTDSGVYWCVARNELGFARSKNATLDV 225
            A  ++   L     +   +G Y C    +  F    N  L V
Sbjct: 65  RASKVYLFELHITDAQPAFTGSYRCEVSTKDKFD-CSNFNLTV 106

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 59.9 bits (145), Expect = 2e-11
 Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 17/95 (17%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
             +   P    V   +  TL C+    PE    +W+ + SL+S++  S+ I         
Sbjct: 8   AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFI--------- 58

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                     DSG Y C          S    L+V
Sbjct: 59  ----DAATVNDSGEYRCQTNLST---LSDPVQLEV 86

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 56.8 bits (137), Expect = 3e-10
 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 13/95 (13%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
             + + P   V    +P  L C +       ++ + ++G                 S F 
Sbjct: 90  WLLLQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK--------YFHHNSDFH 140

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           +     K   DSG Y+C          S+   + +
Sbjct: 141 IPKATLK---DSGSYFCRGLVGSKNVSSETVNITI 172

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.0 bits (148), Expect = 4e-11
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGK 197
            ++      +  T+ C        ++        V ++  +  + +  G LFF  +    
Sbjct: 253 ESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKV---- 308

Query: 198 KDTDSGVYWCVARNELGFARSKNATLDVAG 227
           +  D GVY C A  E     + +  L V  
Sbjct: 309 QVEDGGVYTCYAMGETFNE-TLSVELKVYN 337

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 60.5 bits (146), Expect = 4e-11
 Identities = 11/99 (11%), Positives = 25/99 (25%), Gaps = 4/99 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
            ++                + C        +    +          +      AG    +
Sbjct: 92  AKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAG----I 147

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIS 230
           ++ + K+        C A+ +  +  S   TL V   I 
Sbjct: 148 TIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIK 186

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 58.2 bits (140), Expect = 3e-10
 Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 6/107 (5%)

Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRIL 182
           V      +P ++    S ++ + +  T+ C            W K               
Sbjct: 181 VREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNS 240

Query: 183 LPAGSLFFLSL----VHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
              G   +       +   +  DSGV+ C A N  G A +   TL V
Sbjct: 241 WHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSA-NVTTTLKV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 51.3 bits (122), Expect = 5e-08
 Identities = 12/83 (14%), Positives = 20/83 (24%), Gaps = 14/83 (16%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P I    +  +V   +  +L C         + W                          
Sbjct: 13  PSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVENKKNEW--------- 59

Query: 192 SLVHGKKDTDSGVYWCVARNELG 214
            +    + T +G Y C   N L 
Sbjct: 60  -IQEKAEATRTGTYTCSNSNGLT 81

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 60.6 bits (146), Expect = 5e-11
 Identities = 10/98 (10%), Positives = 22/98 (22%), Gaps = 17/98 (17%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADG-YPEPR---IEWYKDGSLVSAEIGSHRILLPAGS 187
             ++           +  TL     G  P P      W KD         +  +      
Sbjct: 3   FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADAT-- 60

Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                        ++G Y    ++       ++    +
Sbjct: 61  -----------SENAGSYKVTVQDTDTMTSVESEVFLM 87

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 46.4 bits (109), Expect = 3e-06
 Identities = 12/112 (10%), Positives = 25/112 (22%), Gaps = 22/112 (19%)

Query: 131 VPRITEHPASAVVPRHEPTTLNCK---ADGYPEP-----RIEWYKDGSLVSAEIGSHRIL 182
           +      P    V       L+     + G            W K   ++          
Sbjct: 92  LIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT-------- 143

Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTATD 234
                +             +GVY      E   + +  +T  +   ++   D
Sbjct: 144 --TQDITIQEF----TADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQD 189

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 26/113 (23%)

Query: 138 PASAVVPRHEPTTLNCK--------ADGYPEPRI--EWY--KDGSLVSAEIGSH------ 179
             S  V      +LN          + G P   I   WY  ++G L    IGS       
Sbjct: 191 VESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALE 250

Query: 180 -RILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST 231
              + P G LF  S  +     D+  +WCVA+        ++ T++VA   S 
Sbjct: 251 GFSITPDGHLFKESATY----DDTAKFWCVAKLYQQ---IEDETVEVAASTSR 296

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 56.6 bits (137), Expect = 6e-11
 Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 7/94 (7%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
             + +  A   V   E     C+     +   +WYK+G  V         +   G    L
Sbjct: 9   LEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRP--SKRITISHVGRFHKL 65

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            ++   +  D G Y  V         S +A L+ 
Sbjct: 66  -VIDDVRPEDEGDYTFVPDGYAL---SLSAKLNF 95

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 56.2 bits (136), Expect = 7e-11
 Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 9/96 (9%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
            +  + +      V   E      +    P+   +W   G  ++A       ++  G   
Sbjct: 4   ALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAA--SPDCEIIEDGKKH 60

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            L ++H  +   +G     A N     +S  A L V
Sbjct: 61  IL-ILHNCQLGMTGEVSFQAAN----TKSA-ANLKV 90

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 56.2 bits (136), Expect = 9e-11
 Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 4/89 (4%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCK-ADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
               IT+   +  V   E  +  C  +         W   G  V +   S       G  
Sbjct: 7   GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGS--SSRFQATRQGRK 64

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFAR 217
           + L +       D+G      R     A 
Sbjct: 65  YILVVREAAPS-DAGEVVFSVRGLTSKAS 92

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 57.3 bits (138), Expect = 2e-10
 Identities = 12/98 (12%), Positives = 28/98 (28%), Gaps = 15/98 (15%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
            V  +T +  + ++   +  TL  ++     P ++               + +    +L 
Sbjct: 97  LVFGLTANSDTHLLQ-GQSLTLTLESPPGSSPSVQCRSPR---------GKNIQGGKTLS 146

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
              L    +  DSG + C               + V  
Sbjct: 147 VSQL----ELQDSGTWTCTVLQNQKKV-EFKIDIVVLA 179

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 10/82 (12%), Positives = 17/82 (20%), Gaps = 14/82 (17%)

Query: 147 EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGK--------- 197
           +   L C A      +  W     +         +      L   +              
Sbjct: 11  DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 70

Query: 198 -----KDTDSGVYWCVARNELG 214
                K  DS  Y C   ++  
Sbjct: 71  IIKNLKIEDSDTYICEVEDQKE 92

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 58.7 bits (141), Expect = 2e-10
 Identities = 14/89 (15%), Positives = 23/89 (25%), Gaps = 7/89 (7%)

Query: 132 PRITEHPASAVVPRHEPTTLNCK-ADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           P                  L C          I WYK+   +   I   +      +L  
Sbjct: 129 PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELI--IDGTKYSQSGQNLII 186

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSK 219
            +     +  DSG Y C    +    ++ 
Sbjct: 187 HNP----ELEDSGRYDCYVHYDDVRIKND 211

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 53.3 bits (127), Expect = 1e-08
 Identities = 13/101 (12%), Positives = 24/101 (23%), Gaps = 8/101 (7%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEP----RIEWYKDGSLVSAEIGSHRILLPAGS 187
                      V   EP  + C A           I+W      +         +L +  
Sbjct: 229 RFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSG 288

Query: 188 LFF---LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                 L   +  ++     Y C   N      +   T+ +
Sbjct: 289 GITEATLYFENVTEEYIGNTYTCRGHNYYFDK-TLTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 51.8 bits (123), Expect = 4e-08
 Identities = 11/93 (11%), Positives = 21/93 (22%), Gaps = 16/93 (17%)

Query: 142 VVPRHEPTTLNCKADGY---------PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLS 192
           +    EP +  C               +  + W K G             +  G L+  +
Sbjct: 40  MAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRR----PLNRRVKNGDLWIAN 95

Query: 193 LVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                 +     Y C    + G          +
Sbjct: 96  YT---SNDSHRRYLCTVTTKNGDCVQGIVRSHI 125

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 55.5 bits (133), Expect = 3e-10
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 9/109 (8%)

Query: 128 GYRVPRITEHPASAV-VPRHEPTTLNCKADGYPEPRIEW---YKDGSLVSAEIGSHRILL 183
           GYR+  +   P+  + +   E   LNC A       I++   Y        ++ +  +  
Sbjct: 4   GYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKT 63

Query: 184 PAGSLFFLSL----VHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            +GS     L    + G   +D G+Y C A + L   +  +  + V  K
Sbjct: 64  QSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLM-TKKNSTFVRVHEK 111

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 53.9 bits (130), Expect = 5e-10
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 9/95 (9%)

Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           V   ++ P S  V    P     + +     ++ W + GS +SA   +   L   G+   
Sbjct: 8   VSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISA--SNKYGLATEGTRHT 64

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           L  V      D G Y  +A +           L V
Sbjct: 65  L-TVREVGPADQGSYAVIAGSS-----KVKFDLKV 93

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 54.3 bits (131), Expect = 5e-10
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 3/84 (3%)

Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSL 193
             +   +  V +     L  +     +  ++W K+G  +    GS  I    G+   L  
Sbjct: 19  QKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMS-GSKYIFESIGAKRTL-T 75

Query: 194 VHGKKDTDSGVYWCVARNELGFAR 217
           +      D   Y CV   E     
Sbjct: 76  ISQCSLADDAAYQCVVGGEKCSTE 99

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 18/105 (17%), Positives = 28/105 (26%), Gaps = 7/105 (6%)

Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE---IGSHRILLPAGSLF 189
            +T       V      +L C  D      +E  +           + S R  L    L 
Sbjct: 4   TVTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLP 63

Query: 190 F--LSL-VHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST 231
                  +   +  DSG Y C+      +   K  T+ V      
Sbjct: 64  LGKALFHIPSVQVRDSGQYRCLVICGAAWD-YKYLTVKVKASYMR 107

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 53.9 bits (130), Expect = 7e-10
 Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 9/97 (9%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
              TE   +  V         CK   +P   + W K    + A           G    L
Sbjct: 9   NCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRA--SGKHQPSQEGLTLRL 65

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
             +   +  DS  Y C      G A+S+ A L V G+
Sbjct: 66  -TISALEKADSDTYTCDI----GQAQSR-AQLLVQGR 96

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 53.9 bits (130), Expect = 7e-10
 Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 12/98 (12%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
            + TE   +          L C+        +EW+K    +       R  L   G+   
Sbjct: 20  IKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKGHETLRD---GDRHSLRQDGARCE 74

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
           L +     + D+G Y C+   E       +A L V   
Sbjct: 75  LQIRGLVAE-DAGEYLCMCGKE-----RTSAMLTVRAM 106

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 57.2 bits (138), Expect = 9e-10
 Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 4/117 (3%)

Query: 110 LKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG 169
           L+K+ P    +           PR    P    V   +     C+      P + W+KD 
Sbjct: 461 LRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDD 520

Query: 170 SLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
             +  +     +    G+ + L++   K D D G Y   A+N  G        L+V 
Sbjct: 521 REL--KQSVKYMKRYNGNDYGLTINRVKGD-DKGEYTVRAKNSYGTKEEI-VFLNVT 573

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 55.3 bits (133), Expect = 1e-09
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 15/80 (18%)

Query: 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV 208
           TTL C+     +P +  Y+DG  +     S R++    +            + S  + C 
Sbjct: 118 TTLTCEVMNGTDPELNLYQDGKHLK---LSQRVITHKWTT-----------SLSAKFKCT 163

Query: 209 ARNELGFARSKNATLDVAGK 228
           A N++    S    +    K
Sbjct: 164 AGNKVS-KESSVEPVSCPEK 182

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 15/98 (15%), Positives = 26/98 (26%), Gaps = 17/98 (17%)

Query: 147 EPTTLNCK--ADGYPEPRIEWYKDGSLV----------SAEIGSHRILLPAGSLFFLSLV 194
           +   L+            I+W K               + +      L   G+L    L 
Sbjct: 15  QDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL- 73

Query: 195 HGKKDTDSGVYWCVARNELGFAR-SKNATLDVAGKIST 231
              K  D  +Y     +  G     K   L +  ++S 
Sbjct: 74  ---KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSK 108

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 11/88 (12%), Positives = 21/88 (23%), Gaps = 4/88 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLV--SAEIGSHRILLPAGSLF 189
             I        V   +   +  +       ++ W K+G  +       +       G   
Sbjct: 9   VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFAR 217
            L +       D G Y  +       A 
Sbjct: 68  IL-IFSDVVQEDRGRYQVITNGGQCEAE 94

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
            R T+   +         TL C+        +EW K    +    G    L   G+   L
Sbjct: 9   ARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRD--GGRYSLKQDGTRCEL 64

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             +H     D+G Y C+   E       +ATL V
Sbjct: 65  -QIHDLSVADAGEYSCMCGQE-----RTSATLTV 92

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 2/86 (2%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
             +T+          E   L C+     +  ++W+K+G  +     S   +   G    L
Sbjct: 8   IMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHIL 66

Query: 192 SLVHGKKDTDSGVYWCVARNELGFAR 217
            ++ G    D+  Y  +       A+
Sbjct: 67  -IIEGATKADAAEYSVMTTGGQSSAK 91

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 56.0 bits (134), Expect = 2e-09
 Identities = 12/97 (12%), Positives = 28/97 (28%), Gaps = 15/97 (15%)

Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           V  +T +  + ++   +  TL  ++     P ++               + +    +L  
Sbjct: 97  VFGLTANSDTHLLQ-GQSLTLTLESPPGSSPSVQCRSPR---------GKNIQGGKTLSV 146

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
             L    +  DSG + C               + V  
Sbjct: 147 SQL----ELQDSGTWTCTVLQNQKKV-EFKIDIVVLA 178

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 12/81 (14%), Positives = 19/81 (23%), Gaps = 18/81 (22%)

Query: 147 EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGK--------- 197
           +   L C A      +  W     +    +G+    L  G          +         
Sbjct: 10  DTVELTCTASQKKSIQFHWKNSNQIKI--LGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 67

Query: 198 -------KDTDSGVYWCVARN 211
                  K  DS  Y C   +
Sbjct: 68  PLIIKNLKIEDSDTYICEVED 88

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 17/95 (17%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
             +   P    V   +  TL C+    PE    +W+ + SL+S++  S+ I         
Sbjct: 8   AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFI--------- 58

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                     DSG Y C  +       S    L+V
Sbjct: 59  ----DAATVDDSGEYRCQTQLS---TLSDPVQLEV 86

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 53.0 bits (127), Expect = 9e-09
 Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 13/95 (13%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
             + + P   V    +P  L C +       ++ + ++G        +    +P  +L  
Sbjct: 90  WLLLQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATL-- 146

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                     DSG Y+C          S+   + +
Sbjct: 147 ---------KDSGSYFCRGLVGSKNVSSETVQITI 172

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 54.9 bits (131), Expect = 2e-09
 Identities = 16/77 (20%), Positives = 20/77 (25%), Gaps = 5/77 (6%)

Query: 147 EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYW 206
               L C    YP   I W  +   +    G             LSL    +   SG Y 
Sbjct: 129 TTVILTCPQ--YPGSEILWQHNDKNIG---GDEDDKNIGSDEDHLSLKEFSELEQSGYYV 183

Query: 207 CVARNELGFARSKNATL 223
           C  R       +    L
Sbjct: 184 CYPRGSKPEDANFYLYL 200

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 51.0 bits (121), Expect = 4e-08
 Identities = 14/99 (14%), Positives = 24/99 (24%), Gaps = 14/99 (14%)

Query: 136 EHPASAVVPRHEPT-TLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLV 194
            H       + + +  L C         I W+KDG ++   +   +     GS       
Sbjct: 7   NHLVKVYDYQEDGSVLLTC---DAEAKNITWFKDGKMIG-FLTEDKKKWNLGSN------ 56

Query: 195 HGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTAT 233
                   G+Y C               +  A       
Sbjct: 57  ---AKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDA 92

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 51.9 bits (125), Expect = 3e-09
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 10/95 (10%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
            +I        V   +   L C+       +  W K+G  V     S R+ ++  G +  
Sbjct: 8   LKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQE---SDRLKVVQKGRIHK 62

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           L ++      D G Y               A + V
Sbjct: 63  L-VIANALTEDEGDYVFAPDAYNVTLP---AKVHV 93

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 53.6 bits (128), Expect = 5e-09
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 9/113 (7%)

Query: 124 VHGDGYRVPRITEHPASAV-VPRHEPTTLNCKADGYPEPRIEW---YKDGSLVSAEIGSH 179
           V   GYR+  +   P+  + +   E   LNC A       I++   Y        ++ + 
Sbjct: 97  VVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNR 156

Query: 180 RILLPAGSLFFLSL----VHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            +   +GS     L    + G   +D G+Y C A + L      +  + V   
Sbjct: 157 DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHED 208

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 8/95 (8%), Positives = 27/95 (28%), Gaps = 6/95 (6%)

Query: 131 VPRITEHPASA--VVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
           +  +++          +++   + C         +               +RI   +   
Sbjct: 7   IASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKG 65

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL 223
           F    +     + +G+ +C A+      +S    +
Sbjct: 66  F---TIPSYMISYAGMVFCEAKINDESYQSIMYIV 97

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 6/87 (6%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
            R  E      V      TL C       P ++W    +++       +  L   G++  
Sbjct: 9   VRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRP---GDKYSLRQEGAMLE 64

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFAR 217
           L + + +   DSG Y C   ++   A 
Sbjct: 65  LVVRNLRPQ-DSGRYSCSFGDQTTSAT 90

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 48.2 bits (115), Expect = 7e-08
 Identities = 20/96 (20%), Positives = 29/96 (30%), Gaps = 11/96 (11%)

Query: 132 PRIT--EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
             I   +   S      E   L C+     +    WYKDG  V        ++   G   
Sbjct: 9   VHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEE--SELLVVKMDGRKH 65

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            L ++   K  DSG + C          S    + V
Sbjct: 66  RL-ILPEAKVQDSGEFECRTEGV-----SAFFGVTV 95

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 50.8 bits (120), Expect = 1e-07
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 14/110 (12%)

Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEI------ 176
           V  +  + P +        V      T+NC         R   YK   L    +      
Sbjct: 105 VSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGY 164

Query: 177 ------GSHRI-LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSK 219
                 G  R+ +   G L F  +++  + +D+G Y C A ++    +  
Sbjct: 165 VNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKN 214

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 49.6 bits (117), Expect = 3e-07
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 148 PTTLNCKADGYPEPRIEWYKDG--SLVSAEIGSHR--ILLPAGSLFFLSLVHGKKDTDSG 203
           P    CK   Y +   +W   G  +L S + G  +  +     S      ++     D G
Sbjct: 463 PCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEG 522

Query: 204 VYWCVARNELGFARSKNATLDVAGKISTAT 233
            YWC  +    +  +    + V  + +  +
Sbjct: 523 WYWCGVKQGHFYGETAAVYVAVEERKAAGS 552

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 11/68 (16%), Positives = 20/68 (29%)

Query: 147 EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYW 206
                 C+        +     G    A  G   +        F  ++ G +  D+G Y 
Sbjct: 247 NVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYL 306

Query: 207 CVARNELG 214
           C A ++  
Sbjct: 307 CGAHSDGQ 314

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 18/94 (19%)

Query: 138 PASAVVPRHEPTTLNCKAD---GYPEPRIEWYKDGSLVS-----------AEIGSHRILL 183
           P           ++ C           R  W + G+              +   + R  L
Sbjct: 7   PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANL 66

Query: 184 ---PAGSLFFLSLVHGKKDTDSGVYWCVARNELG 214
              P    F +++    +D DSG Y C       
Sbjct: 67  TNFPENGTFVVNIAQLSQD-DSGRYKCGLGINSR 99

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 13/100 (13%), Positives = 31/100 (31%), Gaps = 16/100 (16%)

Query: 135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK----------------DGSLVSAEIGS 178
              P            + C  +      I+++                 +G + +   G 
Sbjct: 335 PRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGR 394

Query: 179 HRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARS 218
             +L   G+  F  +++     D+G YWC+   +  +  +
Sbjct: 395 LSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTT 434

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 49.0 bits (116), Expect = 2e-07
 Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 8/94 (8%)

Query: 133 RITEHPASAVVPRH-EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           +I   P S  + +  +  +L C   G   P   W          +          S   +
Sbjct: 2   KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDS---PLNGKVTNEGTTSTLTM 58

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           + V      +   Y C A  E      K   +++
Sbjct: 59  NPV---SFGNEHSYLCTATCESR-KLEKGIQVEI 88

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 47.8 bits (113), Expect = 5e-07
 Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 10/107 (9%)

Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADG-YPEPR--IEWYKDGSLVSAEIGSHRILLPA 185
           Y  P+  E   S  +   +P T+ C     YP  R  I+  K   L+ ++         +
Sbjct: 89  YSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKS 148

Query: 186 GSLFFLSLVHGKKDTDSG-VYWCVARNELG------FARSKNATLDV 225
                L +       D G V  C A+  +         R     L V
Sbjct: 149 LETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQV 195

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 49.4 bits (117), Expect = 4e-07
 Identities = 21/102 (20%), Positives = 28/102 (27%)

Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL 183
           V G             +  V   +  T  C A G        +  G  V         + 
Sbjct: 157 VLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVT 216

Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            +        V      D+G Y C+ R E G   S  A L V
Sbjct: 217 SSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 258

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 48.3 bits (114), Expect = 4e-07
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 19/113 (16%)

Query: 131 VPRITEHPASAVVPRHEPT-TLNCKA-DGYPEPRIEWYKDGSLVSAEIGSH-------RI 181
              ++ +  +  V          C + +G P P+I WY++G  +   +  +       R 
Sbjct: 118 ATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRT 177

Query: 182 LLPAGSLF----FLSLVHGKKDTDSGVYWCVARNEL-----GFARSKNATLDV 225
           +  A  L      L L   K D     + C A   L     G   S    L +
Sbjct: 178 VREASGLLSLTSTLYLRLRKDD-RDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 46.3 bits (110), Expect = 5e-07
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 22/111 (19%)

Query: 115 PPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA 174
             S  ++P                      R E   L C+    P   + W KDG  V  
Sbjct: 10  VSSWIVYP-------------SGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVE 55

Query: 175 EIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                 +L    ++  L ++   +  DSG Y C   +E     S + T+ V
Sbjct: 56  --SPALLLQKEDTVRRL-VLPAVQLEDSGEYLCEIDDE-----SASFTVTV 98

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 132 PRITEHPASAV-VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
               +    A  V +        +    P+  ++WYK+G  +     +  I    G    
Sbjct: 8   AAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRP--STKYIFEHKGCQRI 64

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFAR 217
           L  ++  + TD   Y+  A +E     
Sbjct: 65  L-FINNCQMTDDSEYYVTAGDEKCSTE 90

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 47.4 bits (112), Expect = 8e-07
 Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADG-YPEPRIEWYKD-GSLVSAEIGSHRILLPAGS 187
                ++        +     L C++ G YP+P+I+W  + G  +        ++     
Sbjct: 117 VAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTV--EAPVVADGVG 174

Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
           L+ ++     + +      C  R+ L     K A++ +A
Sbjct: 175 LYAVAASVIMRGSSGEGVSCTIRSSLL-GLEKTASISIA 212

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 9/90 (10%), Positives = 22/90 (24%), Gaps = 14/90 (15%)

Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
             +  +       +       TL C+     +  ++ Y+               L +   
Sbjct: 93  LDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKE-----------HLRSLRQ 141

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARS 218
             +S    +       + C A N +     
Sbjct: 142 KTMSY---QWTNLRAPFKCKAVNRVSQESE 168

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 16/119 (13%), Positives = 29/119 (24%), Gaps = 29/119 (24%)

Query: 131 VPRITEHPASAVVPRHEPTTLNCK---ADGYPEPRIEWYKDGSLVSAEIG---------- 177
           +P +T       V   E   + C     +     R++W        A             
Sbjct: 5   LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSV 64

Query: 178 -----------SHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                              GSL    +    +  D G+Y C  R +          +++
Sbjct: 65  PTGRFQNRSHLVGDTFHNDGSLLLQDV----QKADEGIYTCEIRLKNESM-VMKKPVEL 118

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 42.2 bits (98), Expect = 7e-05
 Identities = 23/141 (16%), Positives = 38/141 (26%), Gaps = 25/141 (17%)

Query: 117 SLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPR---IEWYKDG---- 169
            L     V      +  + E P    V   + T + C      E R   + W        
Sbjct: 104 RLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHT 163

Query: 170 ---SLVSAEIGSHRILLPAGSLFF----LSLVHGKKD----------TDSGVYWCVARNE 212
              +++S +         +   F     L+    + D          +D G+Y C     
Sbjct: 164 EEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVG 223

Query: 213 LGFARSKNATLDVAGKISTAT 233
              +R K   L V       T
Sbjct: 224 KLESR-KTIVLHVVQDEFQRT 243

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 6/86 (6%)

Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRILLPAGS 187
           +  P I+       +P      + C   G +PEP + W ++G  ++A   +     P   
Sbjct: 108 FPTPSIS----DFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTV-SQDPETE 162

Query: 188 LFFLSLVHGKKDTDSGVYWCVARNEL 213
           L+ +S       T +  + C+ +   
Sbjct: 163 LYAVSSKLDFNMTTNHSFMCLIKYGH 188

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 44.9 bits (106), Expect = 4e-06
 Identities = 8/76 (10%), Positives = 22/76 (28%), Gaps = 17/76 (22%)

Query: 150 TLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA 209
           TL C+     +  ++ Y+    + +     + +              +       + C A
Sbjct: 119 TLTCEVLEGTDVELKLYQGKEHLRS--LRQKTMSY------------QWTNLRAPFKCKA 164

Query: 210 RNELGFARSKNATLDV 225
            N +     ++    V
Sbjct: 165 VNRVS---QESEMEVV 177

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 43.2 bits (101), Expect = 4e-06
 Identities = 15/74 (20%), Positives = 20/74 (27%), Gaps = 5/74 (6%)

Query: 150 TLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA 209
            L C     P   I W  +   +  +     I         LSL    +   SG Y C  
Sbjct: 25  ILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDH---LSLKEFSELEQSGYYVCYP 79

Query: 210 RNELGFARSKNATL 223
           R       +    L
Sbjct: 80  RGSKPEDANFYLYL 93

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 43.3 bits (101), Expect = 6e-06
 Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 10/113 (8%)

Query: 122 PGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYP---EPRIEWYKDGSLVSAEIGS 178
            G  G         + P S  V   +   +  K +G     +P I+W+K   L       
Sbjct: 3   SGSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSG 62

Query: 179 HRILL-----PAGSLFFLSLVHGK-KDTDSGVYWCVARNELGFARSKNATLDV 225
            R         A +++ + L  GK    D G Y    + +     S    +DV
Sbjct: 63  ARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCD-SCGFNIDV 114

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 43.1 bits (101), Expect = 7e-06
 Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 18/105 (17%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
             +T H  +  V   +  TL C         ++W          +  + +L  +      
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIF-LNEYPVLKNSK----Y 56

Query: 192 SLVHGKKDT-----------DSGVYWCVARNELGFARSKNATLDV 225
            L+H   +            D GVY C+  ++     +K   + V
Sbjct: 57  QLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSV--STKEVKVIV 99

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 44.1 bits (104), Expect = 9e-06
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 7/97 (7%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P +   P  +V+      T+ C+            K+ S         +  L   +    
Sbjct: 6   PTLWAEP-GSVISWGNSVTIWCQGT-LEAREYRLDKEESPAPW---DRQNPLEPKNKARF 60

Query: 192 SLVHGKKDTDSGVYWCVARNELGF-ARSKNATLDVAG 227
           S+    +D  +G Y C  R+ +G+   S    L + G
Sbjct: 61  SIPSMTED-YAGRYRCYYRSPVGWSQPSDPLELVMTG 96

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 7/95 (7%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P I   P   +VP+ +  T+ C+ + Y     + + +GSL + +           +    
Sbjct: 5   PFIWAEP-HFMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVD---RPKPPERINKVKF 59

Query: 192 SLVHGKKDTDSGVYWCVARNELGF-ARSKNATLDV 225
            +        +G Y C+ R    +   S    L V
Sbjct: 60  YIPDMNSR-MAGQYSCIYRVGELWSEPSNLLDLVV 93

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 14/86 (16%), Positives = 19/86 (22%), Gaps = 7/86 (8%)

Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGS 187
            R P              +  TL C   +      + W        +     R       
Sbjct: 4   RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH--PSRWAGMGRR 61

Query: 188 LFFLSLVHGKKDTDSGVYWCVARNEL 213
           L   S+       DSG Y C      
Sbjct: 62  LLLRSVQL----HDSGNYSCYRAGRP 83

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 7/104 (6%)

Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRIL 182
                + +P I+    S V+P      + C+A       ++   K+ +         R+ 
Sbjct: 2   AQEGDFPMPFISAKS-SPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYRE---IGRRLK 57

Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELG-FARSKNATLDV 225
               +     + H   +  +G Y C  R     F  S    L V
Sbjct: 58  FWNETDPEFVIDHMDAN-KAGRYQCQYRIGHYRFRYSDTLELVV 100

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 23/120 (19%), Positives = 32/120 (26%), Gaps = 13/120 (10%)

Query: 115 PPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA 174
             S  L   V G  Y  P ++      V+   E  +L C +   P  R    K+G     
Sbjct: 91  RYSDTLELVVTGL-YGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEG----- 143

Query: 175 EIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGF----ARSKNATLDVAGKIS 230
                     +G       +       SG+Y C              S    L V   I 
Sbjct: 144 --ELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIH 201

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 18/102 (17%)

Query: 135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLV 194
            E+    V        L C  D   +  ++W K+G             LP      L L 
Sbjct: 3   AENIEYKVSISGTSVELTCPLD--SDENLKWEKNGQ-----------ELPQKHDKHLVLQ 49

Query: 195 HGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTATDCS 236
              +  DSG Y C          +KN  L +  ++ +A D  
Sbjct: 50  DFSEVEDSGYYVCYTPAS-----NKNTYLYLKARVGSADDAK 86

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 6/81 (7%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P +   P  +V+ +  P TL C+           Y++           RI          
Sbjct: 6   PTLWAEP-GSVITQGSPVTLRCQGG-QETQEYRLYREKKTAP---WITRIPQELVKKGQF 60

Query: 192 SLVHGKKDTDSGVYWCVARNE 212
            +     +  +G Y C   ++
Sbjct: 61  PIPSITWE-HTGRYRCYYGSD 80

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 25/117 (21%), Positives = 34/117 (29%), Gaps = 8/117 (6%)

Query: 115 PPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA 174
             S PL   V G  Y  P ++  P S VV      TL C +           K+G     
Sbjct: 86  ESSDPLELVVTGA-YIKPTLSAQP-SPVVNSGGNVTLQCDSQVAF-DGFILCKEGEDEHP 142

Query: 175 EIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE----LGFARSKNATLDVAG 227
           +  + +      S    S+           Y C A +          S    L V G
Sbjct: 143 QCLNSQPHARGSSRAIFSVGPVSPS-RRWWYRCYAYDSNSPYEWSLPSDLLELLVLG 198

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 7/95 (7%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P I   P   +VP+ +  T+ C+ + Y     + + +GSL + +           +    
Sbjct: 8   PFIWAEPHF-MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVD---RPKPPERINKVKF 62

Query: 192 SLVHGKKDTDSGVYWCVARNELGF-ARSKNATLDV 225
            +        +G Y C+ R    +   S    L V
Sbjct: 63  YIPDMNSR-MAGQYSCIYRVGELWSEPSNLLDLVV 96

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
             +   P  +V+ R    T+ C+            K+GS         +  L   +    
Sbjct: 6   ATLWAEP-GSVISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPW---DTQNPLEPKNKARF 60

Query: 192 SLVHGKKDTDSGVYWCVARNELGF-ARSKNATLDVAG 227
           S+    +   +G Y C   +  G+   S    L V G
Sbjct: 61  SIPSMTEH-HAGRYRCYYYSPAGWSEPSDPLELVVTG 96

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 4/96 (4%)

Query: 116 PSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE 175
           PS PL   V G  Y  P ++  P S VV   E  TL C +      R    ++G    + 
Sbjct: 86  PSDPLELVVTGF-YNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSW 142

Query: 176 IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN 211
               ++           +          +  C    
Sbjct: 143 TLDSQLTPSGQFQALFPVGPVTPS-HRWMLRCYGSR 177

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 9/88 (10%)

Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL 183
            H  G   P ++  P SAVVPR    TL C            YK+  +            
Sbjct: 17  SHMGGQDKPFLSAWP-SAVVPRGGHVTLRCHYRH-RFNNFMLYKEDRIHIPIFHGRIF-- 72

Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARN 211
                F +S V       +G Y C   +
Sbjct: 73  --QESFNMSPV---TTAHAGNYTCRGSH 95

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 10/102 (9%)

Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGS- 187
           +R P +  HP   +V   E   L C +D   E     +K+G          +I       
Sbjct: 117 HRKPSLLAHP-GPLVKSGERVILQCWSDIMFE-HFFLHKEGISKDPSRLVGQIHDGVSKA 174

Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGF----ARSKNATLDV 225
            F +  +       +G Y C            A S    + V
Sbjct: 175 NFSIGPM---MLALAGTYRCYGSVTHTPYQLSAPSDPLDIVV 213

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 4/88 (4%)

Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL 183
           +H   +R P +  HP   +V   E   L C +D         +++G              
Sbjct: 1   MHEGVHRKPSLLAHP-GPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTL-RLIGEHH 57

Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARN 211
              S    S+    +D  +G Y C    
Sbjct: 58  DGVSKANFSISRMTQD-LAGTYRCYGSV 84

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A Length = 106

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 3/83 (3%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P I+  P   V+P     T  C+            ++      +        P+ S    
Sbjct: 10  PSISAEP-GTVIPLGSHVTFVCRGP-VGVQTFRLERESRSTYNDTEDVSQASPSESEARF 67

Query: 192 SLVHGKKDTDSGVYWCVARNELG 214
            +    +  ++G Y C+      
Sbjct: 68  RIDSVSEG-NAGPYRCIYYKPPK 89

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 39.7 bits (91), Expect = 6e-04
 Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 7/94 (7%)

Query: 125 HGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLP 184
                   +                 L C        R+ W     ++ AE      L+ 
Sbjct: 527 GDASVCPDKSKGSYRQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAE-SPKYGLMG 584

Query: 185 AGSLFFLSLVHGKKDTDSGVYWCVARNELGFARS 218
             +L   +L     + DSGVY C++  E    ++
Sbjct: 585 RKNLLIFNL----SEGDSGVYQCLSE-ERVKNKT 613

>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class II, glycoprotein, immune response, membrane, transmembrane, GTP-binding, methylation; HET: NAG; 1.80A {Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A 1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A* 1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A 2g9h_A* 1h15_A ... Length = 181

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 8/74 (10%)

Query: 129 YRVPRITEHPASAVVPRH-----EPTTLNCKADG-YPEP-RIEWYKDGSLVSAEIGSHRI 181
              P     P   V+        EP  L C  D   P    + W ++G  V+  + S  +
Sbjct: 78  NYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGV-SETV 136

Query: 182 LLPAGSLFFLSLVH 195
            LP     F    +
Sbjct: 137 FLPREDHLFRKFHY 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	238
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.84
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.83
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.82
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.81
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.81
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.81
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.81
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.81
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.81
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.8
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.8
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.8
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.8
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.79
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.79
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.78
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.78
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.78
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.78
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.78
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.78
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.77
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.77
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.77
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.77
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.77
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.76
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.76
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.76
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.76
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.75
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.75
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.75
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.75
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.75
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.75
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.75
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.75
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.74
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.74
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.74
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.74
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.74
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.73
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.73
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.73
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.73
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.73
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.72
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.72
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.72
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.72
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.72
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.72
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.71
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.71
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.71
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.71
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.71
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.71
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.71
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.71
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.71
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.7
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.7
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.7
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.7
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.7
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.7
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.7
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.7
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.7
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.69
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.69
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.69
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.68
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.68
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.68
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.68
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.68
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.68
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.68
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.68
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.67
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.67
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.67
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.67
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.66
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.66
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.66
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.66
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.66
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.66
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.66
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.66
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.65
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.65
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.65
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.65
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.65
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.65
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.64
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.64
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.64
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.64
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.64
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.64
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.64
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.64
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.63
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.63
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.63
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.63
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.63
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.63
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.63
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.62
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.62
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.62
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.62
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.62
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.62
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.62
1he7_A	126	High affinity nerve growth factor receptor; transf	99.62
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.62
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.62
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.61
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.61
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.61
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.61
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.61
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.61
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.61
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.6
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.6
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.6
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.59
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.59
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.59
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.59
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.58
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.58
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.58
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.58
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.57
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.57
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.56
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.56
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.56
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.56
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.56
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.56
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.55
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.55
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.55
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.55
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.55
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.54
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.54
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.54
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.53
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.53
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.53
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.53
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.52
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.52
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.52
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.51
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.51
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.5
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.5
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.5
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.5
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.5
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.5
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.5
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.5
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.5
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.5
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.5
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.49
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.49
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.49
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.48
2ens_A	96	Advanced glycosylation END product-specific recept	99.48
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.48
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.48
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.48
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.48
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.48
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.48
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.48
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.48
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.48
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.48
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.47
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.47
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.47
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.46
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.46
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.46
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.46
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.46
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.46
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.46
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.46
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.45
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.45
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.45
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.45
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.45
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.45
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.45
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.45
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.44
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.44
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.44
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.44
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.44
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.43
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.43
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.43
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.43
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.43
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.43
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.42
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.42
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.42
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.42
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.41
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.41
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.41
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.41
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.41
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.41
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.4
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.4
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.39
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.38
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.38
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.37
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.37
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.37
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.36
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.36
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.36
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.36
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.36
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.36
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.35
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.35
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.35
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.34
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.34
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.34
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.33
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.33
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.33
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.33
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.33
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.32
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.31
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.31
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.31
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.31
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.31
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.31
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.3
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.3
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.3
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.3
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.29
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.29
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.28
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.28
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.28
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.28
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.28
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.27
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.27
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.27
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.27
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.26
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.25
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.25
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.25
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.24
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.24
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.24
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.24
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.24
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.23
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.23
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.23
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.23
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.22
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.22
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.22
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.22
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.21
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	99.21
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.21
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.21
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.21
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.21
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.2
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.2
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.19
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.17
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.17
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.17
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.17
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	99.16
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.16
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.16
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.16
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.16
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.16
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.15
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.15
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.15
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.15
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.15
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.14
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.14
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.14
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.13
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.13
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.13
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.12
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.11
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.1
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.1
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.1
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.08
3khq_A	133	B-cell antigen receptor complex-associated protei	99.08
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.08
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.08
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.07
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.07
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.07
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.07
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.07
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.06
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.05
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.05
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.05
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.04
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	99.04
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.04
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	99.04
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.04
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.04
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.04
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.04
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.03
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.03
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.03
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	99.02
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.01
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.01
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.01
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.01
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.0
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.0
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.99
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	98.99
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	98.99
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	98.99
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	98.98
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	98.98
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.98
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	98.98
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.97
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.97
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.95
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.95
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.95
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.95
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.94
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.94
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	98.93
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	98.93
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	98.92
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.92
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.92
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	98.91
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	98.9
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.9
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	98.9
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	98.9
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.89
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	98.89
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	98.88
1xt5_A	135	Variable region-containing chitin-binding protein	98.88
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.88
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.87
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	98.87
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.86
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	98.86
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	98.86
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.85
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.85
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.84
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	98.84
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.83
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.83
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	98.83
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.82
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	98.81
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	98.81
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	98.81
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	98.81
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	98.81
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	98.81
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	98.8
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	98.8
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.8
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.8
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.8
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	98.79
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.79
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.79
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	98.79
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.78
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.78
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	98.77
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	98.77
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.77
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	98.76
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	98.76
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.76
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	98.76
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.76
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.75
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	98.74
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	98.74
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	98.74
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.74
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.74
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	98.72
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.72
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.72
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	98.72
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	98.71
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	98.71
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	98.7
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	98.7
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	98.7
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.7
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	98.69
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.69
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.69
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.69
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	98.69
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.68
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.68
4esk_A	102	LAIR-1, mlair1, leukocyte-associated immunoglobuli	98.67
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	98.67
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	98.67
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.67
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.66
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.66
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	98.66
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.66
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.66
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.65
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	98.64
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	98.63
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	98.62
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.62
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.61
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	98.61
3kg5_A	134	B-cell antigen receptor complex-associated protei	98.61
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.6
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.6
4ety_A	118	LAIR-1, mlair1, leukocyte-associated immunoglobuli	98.6
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.59
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.59
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.58
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.58
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.58
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	98.58
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	98.57
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	98.57
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	97.99
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	98.57
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.57
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	98.56
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	98.56
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.56
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	98.56
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	98.55
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	98.55
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	98.54
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	98.53
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.51

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.84  E-value=1.9e-20  Score=145.76  Aligned_cols=156  Identities=16%  Similarity=0.179  Sum_probs=106.6

Q ss_pred             cCCCccEEEecccccccc-----------ceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCC-cceecce---
Q psy18191         60 FYPKPICLRFQDLLPQSK-----------QGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPS-LPLFPGV---  124 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~-----------~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~-~~~~~~~---  124 (238)
                      ..|.|.+.|++++.++..           .|...|.+.++.++|+|.|+|.+.+    |.......... ......+   
T Consensus        29 ~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N----g~a~~~~~~~~~~~~~~~~~~~  104 (207)
T 3rbs_A           29 LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD----GKATNHSTVVLVGDVFKKLQKE  104 (207)
T ss_dssp             CCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE----TTEEEEEEEEECTHHHHHHHHH
T ss_pred             CCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC----CCeEEEEEEEEEccchhhhccc
Confidence            357889999999986632           2445788999999999999987665    11111110000 0000000   


Q ss_pred             -ecC-----CccCCEEEeCCCceEEeCCCcEEEEEEEeee-CCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCC
Q psy18191        125 -HGD-----GYRVPRITEHPASAVVPRHEPTTLNCKADGY-PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGK  197 (238)
Q Consensus       125 -~~~-----v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v  197 (238)
                       ...     ...+|.|...+ +..+.+|+++.|.|.+.|. |.|.++|+|+|..+..+   .++....+...  +.|..+
T Consensus       105 ~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~---~~~~~~~~~~~--L~I~~v  178 (207)
T 3rbs_A          105 AEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD---EKHDFKDGICT--LLITEF  178 (207)
T ss_dssp             HHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCC---CCCCCSSEEEE--EEETTC
T ss_pred             ccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCC---CceEcCCCEEE--EEECCC
Confidence             000     01378887655 4788999999999999999 99999999999998753   12222233222  237888


Q ss_pred             CCCCCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191        198 KDTDSGVYWCVARNELGFARSKNATLDVA  226 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~  226 (238)
                      ..+|+|.|+|.|.|.+|...+ .+.|.++
T Consensus       179 ~~~D~G~Y~C~a~N~~G~~~~-~~~L~~~  206 (207)
T 3rbs_A          179 SKKDAGIYEVILKDDRGKDKS-RLKLVDE  206 (207)
T ss_dssp             CGGGCEEEEEEEEETTEEEEE-EEEECCC
T ss_pred             CcccCEEEEEEEEcCCCEEEE-EEEEecC
Confidence            999999999999999999975 8888754

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.83  E-value=1.7e-20  Score=145.64  Aligned_cols=143  Identities=15%  Similarity=0.146  Sum_probs=97.5

Q ss_pred             CCCccEEEecccccccc--------------------------ceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeC
Q psy18191         61 YPKPICLRFQDLLPQSK--------------------------QGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYH  114 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~--------------------------~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~  114 (238)
                      .|.+.+.|||++.....                          .+...|.|.++..+|+|.|+|.+.+.  .|...+   
T Consensus        23 ~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~--~g~~~~---   97 (203)
T 4fa8_A           23 GPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLG--ETEVTK---   97 (203)
T ss_dssp             STTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEET--TEEEEE---
T ss_pred             CCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCeEEEEEEEcC--CCcEEE---
Confidence            56788999998642211                          11235778888899999999876653  222111   


Q ss_pred             CCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeecc--CCccEEEecCCcEEEEE
Q psy18191        115 PPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRILLPAGSLFFLS  192 (238)
Q Consensus       115 ~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~--~~~~~~~~~~~~l~~~~  192 (238)
                              .+.+.+..||.+...+....+.+|+++.|.|.+.|.|.|.++|++++..+...  ...+.....+|++.++.
T Consensus        98 --------~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~  169 (203)
T 4fa8_A           98 --------QEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAV  169 (203)
T ss_dssp             --------EEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEECTTSCEEEEE
T ss_pred             --------EEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEeCCCCEEEEE
Confidence                    12223456788877777788899999999999999999999999876544321  12233445677776653


Q ss_pred             eecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        193 LVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       193 vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                       |..+..+|+|.|+|.|.|.+|+++
T Consensus       170 -i~~v~~~D~G~YtC~A~N~~G~a~  193 (203)
T 4fa8_A          170 -DLSLPKPWHLPVTCVGKNDKEEAH  193 (203)
T ss_dssp             -EEEECSSCCCCEEEEEESSSCEEE
T ss_pred             -ECCCCHHHCEEEEEEEEcCCCEEE
Confidence             345589999999999999999986

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.82  E-value=1.8e-19  Score=139.97  Aligned_cols=160  Identities=24%  Similarity=0.314  Sum_probs=110.6

Q ss_pred             CCCccEEEecccccccc-----------ceEEEEEcCCCCC-CCCCceEEEeCCCcccCC-ceEEeCCCCcceecceec-
Q psy18191         61 YPKPICLRFQDLLPQSK-----------QGLMYLVGSQASP-DYPNRFSLCNNKTWQKGL-PLKKYHPPSLPLFPGVHG-  126 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~-----------~g~~~l~~~~~~~-~~~g~y~~~~~~~~~~G~-y~c~~~~~~~~~~~~~~~-  126 (238)
                      .+.+.+.|++++..+..           .+...|.+.++.. .|+|.|+|.+.+..  |. ....      ..+..... 
T Consensus        33 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~--g~~~~~~------~~l~V~~~~  104 (212)
T 2yd1_A           33 DPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGV--GDAVSAD------ATLTIYEGD  104 (212)
T ss_dssp             SSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSS--SCEEEEE------EEEEEECTT
T ss_pred             CCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCC--CCeEEee------EEEEEeccc
Confidence            45668999999875531           1224677888888 89999998876632  22 1111      01110000 


Q ss_pred             -CCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEE
Q psy18191        127 -DGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       127 -~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                       ....+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+...  ..+....++.|.    |..+..+|+|.|
T Consensus       105 ~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~L~----i~~v~~~d~G~Y  178 (212)
T 2yd1_A          105 KTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMS--NPRYSLKDGFLQ----IENSREEDQGKY  178 (212)
T ss_dssp             CSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTT--STTEEEETTEEE----ECSCCGGGCEEE
T ss_pred             CCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccC--CCeEEccCCeEE----EccCChhhCEEE
Confidence             0112388888888888999999999999999999999999999988753  222334466665    556699999999


Q ss_pred             EEEEEeCCCceeEEEEEEEEccCCCCCCC
Q psy18191        206 WCVARNELGFARSKNATLDVAGKISTATD  234 (238)
Q Consensus       206 ~C~a~N~~G~~~s~~~~L~V~~~~~~~~~  234 (238)
                      +|.|.|..|...+..+.|.|......+..
T Consensus       179 ~C~a~N~~G~~~s~~~~l~V~~~~~~~~~  207 (212)
T 2yd1_A          179 ECVAENSMGTEHSKATNLYVKVRRVGTKH  207 (212)
T ss_dssp             EEEEEETTEEEECCCEEEEEEC---C---
T ss_pred             EEEeecCCCceeEEEEEEEEEeccccccc
Confidence            99999999999754589999887655443

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.81  E-value=3.4e-19  Score=124.25  Aligned_cols=97  Identities=28%  Similarity=0.364  Sum_probs=78.0

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      ..||.|...|.++.+.+|+++.|.|.+.|.|.|.++|+++|..|..+  .+.....++.... +.|..+..+|+|.|+|.
T Consensus        11 ~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~--~~~~~~~~~~~~~-L~I~~v~~~D~G~Y~C~   87 (107)
T 3knb_B           11 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS--ERLSFPADGAEHG-LLLTAALPTDAGVYVCR   87 (107)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC--SSEECCEETTEEE-EEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccce--eeEEEeecCceEE-EEEecCChhhCEEEEEE
Confidence            36899999999999999999999999999999999999999998753  2222222332222 23788899999999999


Q ss_pred             EEeCCCceeEEEEEEEEccCC
Q psy18191        209 ARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      |.|.+|...+ .+.|.|..+|
T Consensus        88 a~N~~G~~~~-~~~l~V~~pP  107 (107)
T 3knb_B           88 ARNAAGEAYA-AAAVTVLEPP  107 (107)
T ss_dssp             EEETTEEEEE-EEEEEEEC--
T ss_pred             EEECCCEEEE-EEEEEEEcCC
Confidence            9999999974 9999998764

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.81  E-value=5.9e-19  Score=156.80  Aligned_cols=153  Identities=16%  Similarity=0.222  Sum_probs=113.9

Q ss_pred             CCCccEEEeccccccccce---------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccC
Q psy18191         61 YPKPICLRFQDLLPQSKQG---------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRV  131 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g---------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~  131 (238)
                      .|.+.+.|++++..+....         ...|.+.++..+|+|.|+|.+.|..  |....           ...+.+..+
T Consensus       318 ~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~--g~~~~-----------~~~l~V~~~  384 (570)
T 3b43_A          318 SPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA--GSASS-----------STSLKVKEP  384 (570)
T ss_dssp             SSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTT--BCCEE-----------EEEECEECC
T ss_pred             CCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCC--CEEEE-----------EEEEEecCC
Confidence            4578899999987654321         2357778888999999998877642  32211           223335678


Q ss_pred             CEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       132 P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      |.+...|....+.+|+++.|.|.+.|.|.|.+.|+++|..+... ....+ ..++.+..+ .|..+..+|+|.|+|.|.|
T Consensus       385 P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~-~~~~~-~~~~~~~~L-~i~~v~~~D~G~Y~C~A~N  461 (570)
T 3b43_A          385 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG-KKYKI-MSENFLTSI-HILNVDSADIGEYQCKASN  461 (570)
T ss_dssp             CEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSS-SSEEE-EEETTEEEE-EECSCCGGGCEEEEEEEEC
T ss_pred             CeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCC-CCEEE-EEcCCEEEE-EECCCChhhCEEEEEEEEE
Confidence            99988888889999999999999999999999999999988753 22222 223322222 2677899999999999999


Q ss_pred             CCCceeEEEEEEEEccCCC
Q psy18191        212 ELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       212 ~~G~~~s~~~~L~V~~~~~  230 (238)
                      .+|... ..+.|.|..+|.
T Consensus       462 ~~G~~~-~~~~l~v~~~P~  479 (570)
T 3b43_A          462 DVGSDT-CVGSITLKAPPR  479 (570)
T ss_dssp             SSCEEE-EEEEEEECCCCE
T ss_pred             CCCeEE-EEEEEEeccCCc
Confidence            999997 488999877653

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.81  E-value=1.9e-19  Score=152.32  Aligned_cols=146  Identities=24%  Similarity=0.336  Sum_probs=108.9

Q ss_pred             CCCccEEEecc-ccccccce-----EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEE
Q psy18191         61 YPKPICLRFQD-LLPQSKQG-----LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRI  134 (238)
Q Consensus        61 ~~~~~~~w~~~-~~~~~~~g-----~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i  134 (238)
                      .|.|.+.|+++ +.++....     ...|.+.++..+|+|.|+|.+.|..  |..           .....+.+..+|.+
T Consensus       232 ~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~--G~~-----------~~~~~l~v~~~P~~  298 (384)
T 3kld_A          232 NPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSR--GKN-----------VAKGQLTFYAQPNW  298 (384)
T ss_dssp             ESCCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETT--EEE-----------EEEEEEEEEEEEEE
T ss_pred             cCCCcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCC--CeE-----------EEEEEEEEecCCcc
Confidence            45788999984 43433211     1257788888889999998776643  211           11122234568888


Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      ...+.+..+.+|+++.|.|.+.|.|.|.++|+++|..+...   .++...++.|.    |..+..+|+|.|+|.|.|.+|
T Consensus       299 ~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~---~~~~~~~~~L~----i~~v~~~D~G~Y~C~A~N~~G  371 (384)
T 3kld_A          299 VQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTR---DRIQIEQGTLN----ITIVNLSDAGMYQCVAENKHG  371 (384)
T ss_dssp             EECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCB---TTEEEETTEEE----ESSCCGGGCEEEEEEEEETTE
T ss_pred             ccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCC---ccEEEeCCEEE----EeecChhhCEEEEEEEEeCCc
Confidence            88888899999999999999999999999999999988642   23345567666    566699999999999999999


Q ss_pred             ceeEEEEEEEEcc
Q psy18191        215 FARSKNATLDVAG  227 (238)
Q Consensus       215 ~~~s~~~~L~V~~  227 (238)
                      ...+ .+.|.|..
T Consensus       372 ~~~~-~a~L~V~~  383 (384)
T 3kld_A          372 VIFS-SAELSVIA  383 (384)
T ss_dssp             EEEE-EEEEEEC-
T ss_pred             eEEe-ceEEEEec
Confidence            9975 99999864

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.81  E-value=5.5e-19  Score=156.98  Aligned_cols=150  Identities=15%  Similarity=0.117  Sum_probs=111.5

Q ss_pred             CCCccEEEeccccccccce---------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccC
Q psy18191         61 YPKPICLRFQDLLPQSKQG---------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRV  131 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g---------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~  131 (238)
                      .|.|.+.|++++.++....         ...|.+.++..+|+|.|+|.+.|.  .|...|.+           .+.+..+
T Consensus       411 ~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~--~G~~~~~~-----------~l~v~~~  477 (570)
T 3b43_A          411 TPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASND--VGSDTCVG-----------SITLKAP  477 (570)
T ss_dssp             SSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECS--SCEEEEEE-----------EEEECCC
T ss_pred             CCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEEC--CCeEEEEE-----------EEEeccC
Confidence            4578899999987654321         246778889999999999888774  34323321           1225579


Q ss_pred             CEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       132 P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      |.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... .........+.... +.|..+..+|+|.|+|.|.|
T Consensus       478 P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~-~~~~~~~~~~~~~~-L~i~~~~~~d~G~Y~C~a~N  555 (570)
T 3b43_A          478 PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRE-SDNIWISYSENIAT-LQFSRAEPANAGKYTCQIKN  555 (570)
T ss_dssp             CEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCC-TTTEEECCCSSEEE-EEESSCCTTCCEEEEEEEEC
T ss_pred             CcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccC-CCeEEEEECCCEEE-EEECcCCHHHCEEEEEEEEE
Confidence            99999888888999999999999999999999999998766543 22222222222222 23678899999999999999


Q ss_pred             CCCceeEEEEEEEEc
Q psy18191        212 ELGFARSKNATLDVA  226 (238)
Q Consensus       212 ~~G~~~s~~~~L~V~  226 (238)
                      .+|...+ .+.|.|.
T Consensus       556 ~~G~~~~-~a~L~V~  569 (570)
T 3b43_A          556 EAGTQEC-FATLSVL  569 (570)
T ss_dssp             SSCEEEE-EEEECCB
T ss_pred             CCcEEEE-EEEEEEe
Confidence            9999974 9999875

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.81  E-value=1.6e-18  Score=132.26  Aligned_cols=148  Identities=18%  Similarity=0.220  Sum_probs=108.0

Q ss_pred             CccEEEeccccccccce----EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCC
Q psy18191         63 KPICLRFQDLLPQSKQG----LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHP  138 (238)
Q Consensus        63 ~~~~~w~~~~~~~~~~g----~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~  138 (238)
                      .+.+.|++++..+....    ...|.+.++..+|+|.|+|.+.+.   |..           ...+.+.+..+|.+...+
T Consensus        34 ~~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~---~~~-----------~~~~~l~V~~~p~~~~~~   99 (190)
T 2wv3_A           34 LMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFV---SAP-----------KANATIEVKAAPDITGHK   99 (190)
T ss_dssp             EEEEEEEETTEECTTCCBCCSEEEEEESSCCGGGCEEEEEEEEET---TEE-----------EEEEEEEEECCCEEEEEC
T ss_pred             ceEEEEEECCEECcccceEeccEEEEEecCCcccCEEEEEEEEeC---Ccc-----------cccEEEEEecCCcccccC
Confidence            36899999988665432    357888899999999999877653   211           111222355789998888


Q ss_pred             CceEEeCCCcEEEEEEEeeeCCCEEEEEe--CCEEeeccC-CccEEEecCCcEEEEEeecCCC-CCCCeEEEEEEEeCCC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEPRIEWYK--DGSLVSAEI-GSHRILLPAGSLFFLSLVHGKK-DTDSGVYWCVARNELG  214 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p~i~W~~--~g~~l~~~~-~~~~~~~~~~~l~~~~vi~~v~-~~d~G~Y~C~a~N~~G  214 (238)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++  ++..+.... ........++... .+.|..+. .+|+|.|+|.|.|..|
T Consensus       100 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~-~L~i~~~~~~~d~G~Y~C~a~N~~g  178 (190)
T 2wv3_A          100 RSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYT-ELNIVNLQITEDPGEYECNATNSIG  178 (190)
T ss_dssp             SEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEE-EEEECSCCTTTSCEEEEEEEECSSC
T ss_pred             CcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCee-EEEEEeccccCCCEEEEEEEEecCC
Confidence            88889999999999999999999999999  888775432 2222223333211 12267779 7999999999999999


Q ss_pred             ceeEEEEEEEEc
Q psy18191        215 FARSKNATLDVA  226 (238)
Q Consensus       215 ~~~s~~~~L~V~  226 (238)
                      ... ..+.|.|.
T Consensus       179 ~~~-~~~~l~V~  189 (190)
T 2wv3_A          179 SAS-VSTVLRVR  189 (190)
T ss_dssp             EEE-EEEEEEEE
T ss_pred             cce-eEEEEEEE
Confidence            996 58888875

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.81  E-value=6e-19  Score=137.10  Aligned_cols=162  Identities=25%  Similarity=0.279  Sum_probs=105.6

Q ss_pred             CCCccEEEeccccccccce----------EEEEEcCCC-CCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQG----------LMYLVGSQA-SPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGY  129 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g----------~~~l~~~~~-~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~  129 (238)
                      .+.+.+.|++++..+....          ...|.+.++ ...|+|.|+|.+.+..  |......   .+.+.... ....
T Consensus        33 ~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~--g~~~~~~---~l~V~~~~-~~~~  106 (212)
T 2yd6_A           33 DPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNV--GEISVST---RLTVLRED-QIPR  106 (212)
T ss_dssp             ESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETT--EEEEEEE---EEEEECGG-GCCT
T ss_pred             CCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCC--CcEEEEE---EEEEeccC-ccCC
Confidence            3567899999987554321          234777888 5899999998776542  2111110   00010000 0012


Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccE-EEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHR-ILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~-~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      ..|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+.......+ .....+... .+.|..+..+|+|.|+|.
T Consensus       107 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~-~L~i~~~~~~d~G~Y~C~  185 (212)
T 2yd6_A          107 GFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIG-ALQIEQSEESDQGKYECV  185 (212)
T ss_dssp             TCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETTEE-EEEECSCCGGGCEEEEEE
T ss_pred             CcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCCeE-EEEEcCCCcccCEEEEEE
Confidence            347888888888899999999999999999999999999998875321112 222211111 122677799999999999


Q ss_pred             EEeCCCceeEEEEEEEEccCC
Q psy18191        209 ARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      |.|.+|...+..+.|.|...+
T Consensus       186 a~N~~G~~~s~~a~l~~~~~~  206 (212)
T 2yd6_A          186 ATNSAGTRYSAPANLYVRGTK  206 (212)
T ss_dssp             EEETTEEEECCCEEEEEEC--
T ss_pred             EECCCCccccccccEEEEecc
Confidence            999999987778888887654

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.80  E-value=1.6e-18  Score=132.28  Aligned_cols=150  Identities=23%  Similarity=0.271  Sum_probs=106.8

Q ss_pred             CCCccEEEeccccccccc-----------eEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQ-----------GLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGY  129 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~-----------g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~  129 (238)
                      .+.+.+.|++++..+...           +...|.+.++...|+|.|+|.+.+...  .....        .........
T Consensus        32 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~--~~~~~--------~~l~v~~~~  101 (194)
T 2a38_A           32 FPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSG--QATST--------AELLVKAET  101 (194)
T ss_dssp             ESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTE--EEEEE--------EEEEEECCC
T ss_pred             cCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCc--eEeEE--------EEEEEccCC
Confidence            346689999998754432           234688889999999999987755322  11111        111111123


Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCC--cEEEEEeecCCCCCCCeEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAG--SLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~--~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      .+|.+...+....+..|+.+.|.|.+.|.|.|.+.|+++|..+... ........++  .|.+..+    ..+|+|.|+|
T Consensus       102 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~----~~~d~G~Y~C  176 (194)
T 2a38_A          102 APPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSS-LDFQISQEGDLYSLLIAEA----YPEDSGTYSV  176 (194)
T ss_dssp             EEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCS-SSEEEEEETTEEEEEEEEE----CGGGCEEEEE
T ss_pred             CCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCC-CcEEEEEcCCEEEEEECCC----ChhcCeEEEE
Confidence            6788888888889999999999999999999999999999988753 2222222222  3554444    9999999999


Q ss_pred             EEEeCCCceeEEEEEEEEc
Q psy18191        208 VARNELGFARSKNATLDVA  226 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~  226 (238)
                      .|.|..|... ..+.|.|+
T Consensus       177 ~a~n~~g~~~-~~~~l~V~  194 (194)
T 2a38_A          177 NATNSVGRAT-STAELLVQ  194 (194)
T ss_dssp             EEEETTEEEE-EEEEEEEC
T ss_pred             EEEeCCCceE-EEEEEEEC
Confidence            9999999986 48888874

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.80  E-value=3.6e-18  Score=132.06  Aligned_cols=162  Identities=15%  Similarity=0.192  Sum_probs=108.0

Q ss_pred             CCCccEEEeccccccccce---------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcce---------ec
Q psy18191         61 YPKPICLRFQDLLPQSKQG---------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPL---------FP  122 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g---------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~---------~~  122 (238)
                      .+.+.+.|++++.++...+         ...|.+.++..+|+|.|+|.+.+..  |.....+.......         ..
T Consensus        30 ~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~--~~~~~~~~l~v~~~~~~~~~~~~~~  107 (212)
T 2r15_A           30 VEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGK--TGHQKTVDLSGQAYDEAYAEFQRLK  107 (212)
T ss_dssp             CSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSS--CEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCC--cceEEEEEEEEeeccchhhhccccC
Confidence            4578899999988654422         2458888999999999998876632  22111110000000         00


Q ss_pred             -ceecCCccCCEEE-eCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCC
Q psy18191        123 -GVHGDGYRVPRIT-EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       123 -~~~~~v~~~P~i~-~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~  200 (238)
                       .... ...+|.+. ..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... ....+...++.... +.|..+..+
T Consensus       108 ~~~~~-~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~-~~~~~~~~~~~~~~-L~i~~~~~~  184 (212)
T 2r15_A          108 QAAIA-EKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQT-DHCNLKFEAGRTAY-FTINGVSTA  184 (212)
T ss_dssp             HHHHH-HHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCC-SSEEEEEETTTEEE-EEESSCCGG
T ss_pred             ccccc-ccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccC-CCEEEEEcCCCEEE-EEEcCcchH
Confidence             0000 11134444 4466788999999999999999999999999999998754 22233333232222 236788999


Q ss_pred             CCeEEEEEEEeCCCceeEEEEEEEEccC
Q psy18191        201 DSGVYWCVARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       201 d~G~Y~C~a~N~~G~~~s~~~~L~V~~~  228 (238)
                      |+|.|+|.|.|..|... ..+.|.|..+
T Consensus       185 d~G~Y~C~a~N~~g~~~-~~~~l~V~~P  211 (212)
T 2r15_A          185 DSGKYGLVVKNKYGSET-SDFTVSVFIP  211 (212)
T ss_dssp             GCEEEEEEEEETTEEEE-EEEEEEEECC
T ss_pred             HCeEEEEEEEcCCCcEE-EEEEEEEEcc
Confidence            99999999999999996 5999998743

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.80  E-value=8.3e-19  Score=120.73  Aligned_cols=96  Identities=18%  Similarity=0.339  Sum_probs=77.8

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .||.|...|.++.+.+|+++.|.|.+.|.|.|.+.|+++|..+......+......+.... +.|..++.+|+|.|+|.|
T Consensus         4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~-L~I~~~~~~D~G~Y~C~a   82 (100)
T 3knb_A            4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT-LIIMDVQKQDGGLYTLSL   82 (100)
T ss_dssp             EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEE-EEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEE-EEEcCCCccCCEEEEEEE
Confidence            5789988889999999999999999999999999999999998764222333333333222 237888999999999999


Q ss_pred             EeCCCceeEEEEEEEEcc
Q psy18191        210 RNELGFARSKNATLDVAG  227 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V~~  227 (238)
                      .|.+|... ..+.|.|++
T Consensus        83 ~N~~G~~~-~~~~l~V~~   99 (100)
T 3knb_A           83 GNEFGSDS-ATVNIHIRS   99 (100)
T ss_dssp             EETTEEEE-EEEEEEEEC
T ss_pred             EECCCEEE-EEEEEEEEE
Confidence            99999996 599999875

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.80  E-value=7.7e-19  Score=150.85  Aligned_cols=150  Identities=11%  Similarity=0.034  Sum_probs=99.8

Q ss_pred             CCCccEEEeccccccccce---------------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceeccee
Q psy18191         61 YPKPICLRFQDLLPQSKQG---------------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVH  125 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g---------------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~  125 (238)
                      .+.+.+.|++++..+....               ...|.+.++..+|+|.|+|.+.|.                ....+.
T Consensus       255 ~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~----------------~~~~~~  318 (423)
T 3qs7_E          255 NHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH----------------PSQSAL  318 (423)
T ss_dssp             SSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE----------------EEEEEE
T ss_pred             CCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC----------------CCceEE
Confidence            4467899999987553321               125888899999999999888773                111122


Q ss_pred             cCCccCCEEEeCC--CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCe
Q psy18191        126 GDGYRVPRITEHP--ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSG  203 (238)
Q Consensus       126 ~~v~~~P~i~~~~--~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G  203 (238)
                      +.+..+|.+...+  ....+.+|+++.|.|.+.|.|.|.++|+|+|..+.....   . . .+.+.+.  +.....+|+|
T Consensus       319 L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~---~-~-~~~~~~~--~~~~~~~D~G  391 (423)
T 3qs7_E          319 VTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQK---G-L-DNGYSIS--KFCNHKHQPG  391 (423)
T ss_dssp             EEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCC---B-C-SSSSEEE--EECCCTTCCS
T ss_pred             EEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccc---c-c-cCCcEEE--EEecccccCE
Confidence            2255677776654  346678899999999999999999999999999875310   0 0 0111211  1233778999


Q ss_pred             EEEEEEEeCCCceeEEEEEEEEccCCCCCCC
Q psy18191        204 VYWCVARNELGFARSKNATLDVAGKISTATD  234 (238)
Q Consensus       204 ~Y~C~a~N~~G~~~s~~~~L~V~~~~~~~~~  234 (238)
                      .|+|.|.|..|... .++.|.|...+..+..
T Consensus       392 ~YtC~A~N~~G~~~-~s~~L~v~~~p~~~~~  421 (423)
T 3qs7_E          392 EYIFHAENDDAQFT-KMFTLNIRSGTKHHHH  421 (423)
T ss_dssp             CEEEEEEETTEEEE-EEEEEC----------
T ss_pred             EEEEEEEcCCceEE-EEEEEEEecCCccccc
Confidence            99999999999996 6999999998877653

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.79  E-value=3e-18  Score=138.47  Aligned_cols=150  Identities=15%  Similarity=0.220  Sum_probs=109.8

Q ss_pred             CCCccEEEeccccccccce---------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccC
Q psy18191         61 YPKPICLRFQDLLPQSKQG---------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRV  131 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g---------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~  131 (238)
                      .|.+.+.|++++..+....         ...|.+.++..+|+|.|+|.+.+..  |..           ...+.+.+..+
T Consensus       126 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~--g~~-----------~~~~~l~V~~~  192 (284)
T 2rik_A          126 SPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA--GSA-----------SSSTSLKVKEP  192 (284)
T ss_dssp             SSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSS--CEE-----------EEEEEEEEECC
T ss_pred             eCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCC--Cce-----------eEEEEEEEecC
Confidence            3577899999987544321         2467788888899999998776642  211           11122235578


Q ss_pred             CEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       132 P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      |.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...  .......++....+ .|..+..+|+|.|+|.|.|
T Consensus       193 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~L-~i~~v~~~d~G~Y~C~a~N  269 (284)
T 2rik_A          193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG--KKYKIMSENFLTSI-HILNVDSADIGEYQCKASN  269 (284)
T ss_dssp             CBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBT--TTEEEEEETTEEEE-EECSCCGGGCEEEEEEEEE
T ss_pred             CcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCC--CCEEEEEcCCEEEE-EEcCCCcccCEEEEEEEEe
Confidence            88877788888999999999999999999999999999988753  22222222322222 2677899999999999999


Q ss_pred             CCCceeEEEEEEEEcc
Q psy18191        212 ELGFARSKNATLDVAG  227 (238)
Q Consensus       212 ~~G~~~s~~~~L~V~~  227 (238)
                      ..|... ..+.|.|.+
T Consensus       270 ~~G~~~-~~~~l~V~~  284 (284)
T 2rik_A          270 DVGSYT-CVGSITLKA  284 (284)
T ss_dssp             TTEEEE-EEEEEEECC
T ss_pred             CCCcee-EEEEEEEcC
Confidence            999997 489998863

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.79  E-value=3.1e-18  Score=140.70  Aligned_cols=150  Identities=15%  Similarity=0.111  Sum_probs=104.9

Q ss_pred             cCCCccEEEeccccccccce------------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecC
Q psy18191         60 FYPKPICLRFQDLLPQSKQG------------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGD  127 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~g------------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~  127 (238)
                      ..|.+.+.|++++..+....            ...|.+.....+|+|.|+|.+.+....+.           ....+.+.
T Consensus       144 ~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~-----------~~~~~~l~  212 (313)
T 4fqp_A          144 GRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKP-----------QLLTVNLT  212 (313)
T ss_dssp             EBSCCEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSC-----------EEEEEECC
T ss_pred             ccCCcEEEeecCCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCcc-----------ceeeeecc
Confidence            34578899999876443211            12355666667778888877665322111           11122334


Q ss_pred             CccCCEEEeC-CCceEEeCCCcEEEEEEEeeeCCC-EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEE
Q psy18191        128 GYRVPRITEH-PASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       128 v~~~P~i~~~-~~~~~~~~G~~~~L~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                      +..+|.+... +....+.+|+.+.|.|.+.|.|.| .|+|+++|..+...     ....++.|.    |..+..+|+|.|
T Consensus       213 V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~-----~~~~~~~L~----i~~v~~~d~G~Y  283 (313)
T 4fqp_A          213 VYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF-----AVAQGAQLL----IRPVDKPINTTL  283 (313)
T ss_dssp             BCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT-----EEEETTEEE----ECCCSSCCEEEE
T ss_pred             cccCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCc-----eEEeCCEEE----ECcCChhhCEEE
Confidence            6678887654 455667788999999999999999 69999999887632     223355565    566699999999


Q ss_pred             EEEEEeCCCceeEEEEEEEEccCCC
Q psy18191        206 WCVARNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       206 ~C~a~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      +|.|.|.+|... ..+.|.|...|+
T Consensus       284 ~C~a~N~~G~~~-~~~~l~V~~~PP  307 (313)
T 4fqp_A          284 ICNVTNALGARQ-AELTVQVKEGPP  307 (313)
T ss_dssp             EEEEECSSCEEE-EEEEEEEECCC-
T ss_pred             EEEEEeCCCcEE-EEEEEEEEeCCC
Confidence            999999999996 599999987654

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.78  E-value=1.1e-18  Score=132.83  Aligned_cols=151  Identities=25%  Similarity=0.319  Sum_probs=110.6

Q ss_pred             CCCccEEEeccccccccc--eE------EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCC
Q psy18191         61 YPKPICLRFQDLLPQSKQ--GL------MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVP  132 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~--g~------~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P  132 (238)
                      .+.+.+.|++++..+...  ..      ..|.+.++...|+|.|+|...+..  |...          .....+.+..+|
T Consensus        34 ~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~----------~~~~~l~v~~~p  101 (192)
T 2iep_A           34 YPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGV--GGAV----------ESCGALQVKMKP  101 (192)
T ss_dssp             ESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSS--SCCE----------EEEEEEEEEEEE
T ss_pred             CCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCC--Ccee----------EeEEEEEEEeCC
Confidence            456789999988754321  11      246778888889999998776532  2111          111122245678


Q ss_pred             EEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       133 ~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      .+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+...  .......++.|.    |..+..+|+|.|+|.|.|.
T Consensus       102 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~--~~~~~~~~~~L~----i~~~~~~d~G~Y~C~a~n~  175 (192)
T 2iep_A          102 KITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALREN--SRIAVLESGSLR----IHNVQKEDAGQYRCVAKNS  175 (192)
T ss_dssp             EEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCC--SSEEECTTSCEE----ESSCCGGGCEEEEEEEEET
T ss_pred             ccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCC--CcEEEecCCcEE----EecCChhhCEEEEEEEEcC
Confidence            8888888889999999999999999999999999999988753  333444566665    5666999999999999999


Q ss_pred             CCceeEEEEEEEEccCC
Q psy18191        213 LGFARSKNATLDVAGKI  229 (238)
Q Consensus       213 ~G~~~s~~~~L~V~~~~  229 (238)
                      .|...+..+.|.|..++
T Consensus       176 ~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          176 LGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             TEEEECCCEEEEEEC--
T ss_pred             CCcEEEEEEEEEEEeCC
Confidence            99986667899887654

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.78  E-value=3.2e-18  Score=131.01  Aligned_cols=143  Identities=22%  Similarity=0.285  Sum_probs=103.4

Q ss_pred             CCCccEEEeccccccccce------------------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceec
Q psy18191         61 YPKPICLRFQDLLPQSKQG------------------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFP  122 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g------------------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~  122 (238)
                      .+.+.+.|++++..+....                  ...|.+.++...|+|.|+|.+.+...      ..      ...
T Consensus        30 ~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~------~~------~~~   97 (195)
T 2c5d_C           30 GEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQ------TF------VSQ   97 (195)
T ss_dssp             SSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEETTE------EE------ECC
T ss_pred             CCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEeCCC------ce------ecc
Confidence            4566899999988654431                  13577788888888888877665321      10      011


Q ss_pred             ceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC-EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCC
Q psy18191        123 GVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       123 ~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d  201 (238)
                      .+.+.+..+|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++++..+......    ...+.|.    |..++  |
T Consensus        98 ~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~----~~~~~L~----i~~~~--d  167 (195)
T 2c5d_C           98 PGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH----GPQRSLH----VPGLN--K  167 (195)
T ss_dssp             CEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS----SCCEEEE----ECCCS--S
T ss_pred             cEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc----CCCCeEE----Ecccc--c
Confidence            122335678999888888999999999999999999999 99999999887653111    2233444    34434  8


Q ss_pred             CeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        202 SGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       202 ~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      +|.|+|.|.|..|...+..+.|.|
T Consensus       168 ~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          168 TSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CceEEEEEEcCCCceEEEEEEEEE
Confidence            999999999999998646889988

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.78  E-value=4.4e-18  Score=129.54  Aligned_cols=147  Identities=18%  Similarity=0.123  Sum_probs=106.1

Q ss_pred             CCccEEEec-cccccccc-----------eEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCc
Q psy18191         62 PKPICLRFQ-DLLPQSKQ-----------GLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGY  129 (238)
Q Consensus        62 ~~~~~~w~~-~~~~~~~~-----------g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~  129 (238)
                      +.+.+.|++ ++..+...           +...|.+.++..+|+|.|+|.+.+... +           .....+.+.+.
T Consensus        31 ~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~-----------~~~~~~~l~v~   98 (191)
T 1epf_A           31 KDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDG-T-----------QSEATVNVKIF   98 (191)
T ss_dssp             CCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTT-E-----------EEEEEEEEEEE
T ss_pred             CCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCC-c-----------ceEEEEEEEee
Confidence            367899999 77644321           124677888999999999987665321 1           01112222355


Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+............++.|.    |..+..+|+|.|+|.|
T Consensus        99 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~----i~~~~~~d~G~Y~C~a  174 (191)
T 1epf_A           99 QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ----IRGIKKTDEGTYRCEG  174 (191)
T ss_dssp             CCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEE----ETTCCGGGCEEEEEEE
T ss_pred             cCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEE----ECCCChhhCEEEEEEE
Confidence            788888888888999999999999999999999999999999876534445555566665    6667999999999999


Q ss_pred             EeCCCceeEEEEEEEE
Q psy18191        210 RNELGFARSKNATLDV  225 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V  225 (238)
                      .|..|... ....+.|
T Consensus       175 ~n~~~~~~-~~~~i~v  189 (191)
T 1epf_A          175 RILARGEI-NFKDIQV  189 (191)
T ss_dssp             EEGGGTEE-EEEEEEE
T ss_pred             EEecceeE-EEEEEEE
Confidence            99995443 2444443

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.78  E-value=1.1e-17  Score=141.52  Aligned_cols=149  Identities=16%  Similarity=0.257  Sum_probs=111.6

Q ss_pred             CCCccEEEeccccccccceE------EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEE
Q psy18191         61 YPKPICLRFQDLLPQSKQGL------MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRI  134 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g~------~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i  134 (238)
                      .|.+.+.|++++..+.....      ..|.+.++..+|+|.|+|.+.+...  .           ....+.+.+..+|.+
T Consensus       249 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g--~-----------~~~~~~l~V~~~p~~  315 (404)
T 3p3y_A          249 VPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMG--S-----------IRHTISVRVKAAPYW  315 (404)
T ss_dssp             SSCCEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSC--E-----------EEEEEEEEEEEEEEE
T ss_pred             CCCCcEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCC--c-----------EEEEEEEEEeCCCee
Confidence            34678999998875543221      2567778888888888887766422  1           111222335578888


Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      ...+.+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+............++.|.    |..+..+|+|.|+|.|.|..|
T Consensus       316 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~----i~~v~~~d~G~Y~C~a~N~~G  391 (404)
T 3p3y_A          316 LDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTII----FRDTQISSRAVYQCNTSNEHG  391 (404)
T ss_dssp             EECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEE----ESSCCSSCCCEEEEEEEETTE
T ss_pred             eccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEE----EeecCHHHCEEEEEEEEeCCC
Confidence            8888889999999999999999999999999999999876432333344556555    566699999999999999999


Q ss_pred             ceeEEEEEEEEcc
Q psy18191        215 FARSKNATLDVAG  227 (238)
Q Consensus       215 ~~~s~~~~L~V~~  227 (238)
                      ... ..+.|.|..
T Consensus       392 ~~~-~~~~l~V~d  403 (404)
T 3p3y_A          392 YLL-ANAFVSVLD  403 (404)
T ss_dssp             EEE-EEEEEEEC-
T ss_pred             cEE-EEEEEEEEe
Confidence            997 499998854

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.78  E-value=2e-18  Score=146.13  Aligned_cols=148  Identities=21%  Similarity=0.305  Sum_probs=109.4

Q ss_pred             CCccEEEeccccccccce--E-----EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEE
Q psy18191         62 PKPICLRFQDLLPQSKQG--L-----MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRI  134 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~g--~-----~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i  134 (238)
                      +.+.+.|++++..+....  .     ..|.+..+..+|+|.|+|.+.+...             .....+.+.+..+|.+
T Consensus       249 p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-------------~~~~~~~l~V~~~p~~  315 (403)
T 3laf_A          249 PPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNE-------------NISASAELTVLVPPWF  315 (403)
T ss_dssp             SCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTE-------------EEEEEEEEEEEEEEEE
T ss_pred             CCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCC-------------ceEEEEEEEEECCCcE
Confidence            467889999877543321  1     2466777888888888877655321             1111222335578888


Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      ...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+...  .......++.|.    |..+..+|+|.|+|.|.|..|
T Consensus       316 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~--~~~~~~~~~~L~----i~~v~~~d~G~Y~C~a~N~~G  389 (403)
T 3laf_A          316 LNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPS--DYFQIVGGSNLR----ILGVVKSDEGFYQCVAENEAG  389 (403)
T ss_dssp             EECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCS--SSEEEETTTEEE----ESSCCGGGCEEEEEEEEETTE
T ss_pred             eecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCC--CcEEEecCccEE----EeccccccCEEEEEEEEcCCc
Confidence            88888889999999999999999999999999999988642  333334456665    566699999999999999999


Q ss_pred             ceeEEEEEEEEccCC
Q psy18191        215 FARSKNATLDVAGKI  229 (238)
Q Consensus       215 ~~~s~~~~L~V~~~~  229 (238)
                      ... ..+.|.|.+++
T Consensus       390 ~~~-~~~~l~V~~P~  403 (403)
T 3laf_A          390 NAQ-SSAQLIVPKPA  403 (403)
T ss_dssp             EEE-EEEEEECCCC-
T ss_pred             eEE-EEEEEEEeCCC
Confidence            997 49999998764

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.78  E-value=8.4e-19  Score=143.56  Aligned_cols=150  Identities=17%  Similarity=0.123  Sum_probs=107.4

Q ss_pred             CCCccEEEeccccccccce----------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCcc
Q psy18191         61 YPKPICLRFQDLLPQSKQG----------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYR  130 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g----------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~  130 (238)
                      .|.+.+.|++++.++....          ...|.+.....+|+|.|+|.+.+....+...           ..+.+.+..
T Consensus       142 ~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~-----------~~~~l~V~~  210 (308)
T 4fom_A          142 KPVAHIDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIR-----------YSFILDIQY  210 (308)
T ss_dssp             BSCCEEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEE-----------EEEECCCCE
T ss_pred             cCCceEEEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceE-----------EeEEEEEec
Confidence            4578899999987654322          2356777888889999998877643222111           112334667


Q ss_pred             CCEEEeC-CCceEEeCCCcEEEEEEEeeeCCC-EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        131 VPRITEH-PASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       131 ~P~i~~~-~~~~~~~~G~~~~L~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      +|.+... .....+..|+.+.|.|.+.|.|.| .+.|+|++..+...     ....++.+.   +|..++.+|+|.|+|.
T Consensus       211 ~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~-----~~~~~~~~l---~i~~v~~~d~G~Y~C~  282 (308)
T 4fom_A          211 APEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDG-----LLASDNTLH---FVHPLTFNYSGVYICK  282 (308)
T ss_dssp             EEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSS-----CBCSTTEEE---CCSCCCSCCCSEEEEE
T ss_pred             CCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCc-----EEEcCCeEE---EECCCChhhCEEEEEE
Confidence            7887654 345667788999999999999999 69999998777532     112233332   3677899999999999


Q ss_pred             EEeCCCceeEEEEEEEEccCCC
Q psy18191        209 ARNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      |.|.+|... ..+.|.|..+|.
T Consensus       283 A~N~~G~~~-~~~~l~V~~~P~  303 (308)
T 4fom_A          283 VTNSLGQRS-DQKVIYISDPPH  303 (308)
T ss_dssp             EEETTEEEE-EEEECCEECCC-
T ss_pred             EEeCCCcEE-EEEEEEEEcCCC
Confidence            999999996 599999988764

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.77  E-value=8.7e-18  Score=128.53  Aligned_cols=149  Identities=20%  Similarity=0.287  Sum_probs=102.2

Q ss_pred             CCCccEEEeccccccccc-----------eEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQ-----------GLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGY  129 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~-----------g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~  129 (238)
                      .+.+.+.|++++..+...           +...|.+.++...|+|.|+|.+.+..  |..           ...+.+.+.
T Consensus        31 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~--g~~-----------~~~~~l~V~   97 (197)
T 2j8h_A           31 HPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQG--GSV-----------SGTASLEVE   97 (197)
T ss_dssp             SSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETT--EEE-----------EEEEEEEEE
T ss_pred             cCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECC--Cce-----------eEEEEEEEc
Confidence            456789999998754332           12378888999999999998766532  211           111111133


Q ss_pred             cCCEEEe-----CCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecC-CCCCCCe
Q psy18191        130 RVPRITE-----HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHG-KKDTDSG  203 (238)
Q Consensus       130 ~~P~i~~-----~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~-v~~~d~G  203 (238)
                      .+|.+..     .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... ....+....+...+  .|.. +..+|+|
T Consensus        98 ~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~~L--~i~~~~~~~d~G  174 (197)
T 2j8h_A           98 VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN-GHYQVIVTRSFTSL--VFPNGVERKDAG  174 (197)
T ss_dssp             EEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSS-SSCEEEECSSEEEE--ECTTCCCGGGCE
T ss_pred             CCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecC-CCEEEEEcCCceEE--EEeCCCCcccCE
Confidence            4444432     224567889999999999999999999999999988743 22222222222222  2667 8999999


Q ss_pred             EEEEEEEeCCCceeEEEEEEEEc
Q psy18191        204 VYWCVARNELGFARSKNATLDVA  226 (238)
Q Consensus       204 ~Y~C~a~N~~G~~~s~~~~L~V~  226 (238)
                      .|+|.|.|..|... ..+.|.|.
T Consensus       175 ~Y~C~a~N~~g~~~-~~~~l~V~  196 (197)
T 2j8h_A          175 FYVVCAKNRFGIDQ-KTVELDVA  196 (197)
T ss_dssp             EEEEEEEETTEEEE-EEEEEEEE
T ss_pred             eEEEEEEeCCCcEe-EEEEEEEe
Confidence            99999999999986 59999885

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.77  E-value=3.7e-18  Score=130.70  Aligned_cols=156  Identities=17%  Similarity=0.116  Sum_probs=107.6

Q ss_pred             CCC-ccEEEecccccccc--ce-------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCcc
Q psy18191         61 YPK-PICLRFQDLLPQSK--QG-------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYR  130 (238)
Q Consensus        61 ~~~-~~~~w~~~~~~~~~--~g-------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~  130 (238)
                      .+. +.+.|++++..+..  .+       ...|.+.++..+|+|.|+|...+...  ..........+ ...........
T Consensus        36 ~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~  112 (201)
T 3s97_C           36 FPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSI--TKSVFSKFIPL-IPIPERTTKPY  112 (201)
T ss_dssp             ESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGG--TEEEECCCEEE-EEECCSSCCCE
T ss_pred             CCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCC--Ccchhhcccce-eeccccccCCC
Confidence            345 88999998875421  11       13477788899999999987665321  11111000000 00001111335


Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..   .......++.|.    |..+..+|+|.|+|.|.
T Consensus       113 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~---~~~~~~~~~~L~----i~~v~~~d~G~Y~C~a~  185 (201)
T 3s97_C          113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPS---TAEISTSGAVLK----IFNIQLEDEGIYECEAE  185 (201)
T ss_dssp             EEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCT---TCEEETTTTEEE----ECSCCGGGCEEEEEEEE
T ss_pred             CCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCC---ceeecCCCCEEE----EccCChhhCEEEEEEEE
Confidence            67777766688899999999999999999999999999987763   344444556665    55669999999999999


Q ss_pred             eCCCceeEEEEEEEEcc
Q psy18191        211 NELGFARSKNATLDVAG  227 (238)
Q Consensus       211 N~~G~~~s~~~~L~V~~  227 (238)
                      |..|... ..+.|.|++
T Consensus       186 n~~g~~~-~~~~l~V~a  201 (201)
T 3s97_C          186 NIRGKDK-HQARIYVQA  201 (201)
T ss_dssp             ETTEEEE-EEEEEEEEC
T ss_pred             ecCCcee-eeEEEEEeC
Confidence            9999996 599998863

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.77  E-value=4.6e-18  Score=143.79  Aligned_cols=157  Identities=19%  Similarity=0.222  Sum_probs=102.3

Q ss_pred             CCccEEEeccccccccceE-------EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEE
Q psy18191         62 PKPICLRFQDLLPQSKQGL-------MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRI  134 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~g~-------~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i  134 (238)
                      +.+.+.|++++.+......       ..|.+.++..+|+|.|+|.+.+...  ..... .......+.........+|.+
T Consensus       131 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~--~~~~~-~~~~~~~v~~~~~~~~~~p~~  207 (384)
T 3kld_A          131 GELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVT--NHKVL-GPPTPLILRNDGVMGEYEPKI  207 (384)
T ss_dssp             SCEEEEEEETTEECCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTT--TEEEE-CCCEEEEEEEEEECCCEEEEE
T ss_pred             CCeEEEEEECCCCCEeeccEEEEcCCCcEEEeecCHHHCceEEEEEecccc--cceee-CCceEEEEccCCcccccCCce
Confidence            4578999998875432221       2367788889999999987766432  11111 001001111000112234554


Q ss_pred             Ee-CCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC-CEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        135 TE-HPASAVVPRHEPTTLNCKADGYPEPRIEWYKD-GSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       135 ~~-~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      .. .+....+.+|+++.|.|.+.|.|.|.+.|+++ +..+..   ..+....++.|.    |..+..+|+|.|+|.|.|.
T Consensus       208 ~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~---~~~~~~~~~~L~----I~~v~~~D~G~Y~C~a~N~  280 (384)
T 3kld_A          208 EVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIAR---KARRHKSNGILE----IPNFQQEDAGSYECVAENS  280 (384)
T ss_dssp             EEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCT---TCEECTTSCEEE----ECSCCGGGCEEEEEEEEET
T ss_pred             eecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccc---cceecCCCcEEE----ECCCChhhCEEEEEEEEcC
Confidence            43 46678889999999999999999999999995 444432   223333455555    5666999999999999999


Q ss_pred             CCceeEEEEEEEEccCC
Q psy18191        213 LGFARSKNATLDVAGKI  229 (238)
Q Consensus       213 ~G~~~s~~~~L~V~~~~  229 (238)
                      .|... ..+.|.|..+|
T Consensus       281 ~G~~~-~~~~l~v~~~P  296 (384)
T 3kld_A          281 RGKNV-AKGQLTFYAQP  296 (384)
T ss_dssp             TEEEE-EEEEEEEEEEE
T ss_pred             CCeEE-EEEEEEEecCC
Confidence            99986 48888886654

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.77  E-value=2.4e-17  Score=124.59  Aligned_cols=142  Identities=24%  Similarity=0.308  Sum_probs=103.7

Q ss_pred             CCCccEEEeccccccccce-----------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQG-----------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGY  129 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g-----------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~  129 (238)
                      .+.+.+.|++++..+....           ...|.+.++...|+|.|+|...+..  |.          .....+.+.+.
T Consensus        29 ~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~----------~~~~~~~l~V~   96 (182)
T 1rhf_A           29 MEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGG--ET----------EISQPVWLTVE   96 (182)
T ss_dssp             CSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCT--TC----------EECCCEEEEEE
T ss_pred             CCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCC--Cc----------EEEEEEEEEEe
Confidence            4567899999987554332           2467788888999999998776631  10          01111222355


Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC-EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++++..+...   ..   ....|.    |..+  +|+|.|+|.
T Consensus        97 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~---~~---~~~~L~----i~~~--~d~G~Y~C~  164 (182)
T 1rhf_A           97 GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP---AP---SPSVLN----VTGV--TQSTMFSCE  164 (182)
T ss_dssp             CSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCS---EE---SSEEEE----ECCC--SSCEEEEEE
T ss_pred             cCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCC---CC---CceEEE----Eecc--ccCeEEEEE
Confidence            78999888888899999999999999999999 99999999888642   11   233333    3433  689999999


Q ss_pred             EEeCCCceeEEEEEEEEc
Q psy18191        209 ARNELGFARSKNATLDVA  226 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~  226 (238)
                      |.|..|...+..+.|.|+
T Consensus       165 a~N~~g~~~s~~~~l~Vk  182 (182)
T 1rhf_A          165 AHNLKGLASSRTATVHLQ  182 (182)
T ss_dssp             EEETTEEEECCCEEEEEC
T ss_pred             EECCCCCcccceEEEEeC
Confidence            999999986568888774

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.76  E-value=2.6e-18  Score=151.48  Aligned_cols=146  Identities=13%  Similarity=0.047  Sum_probs=104.4

Q ss_pred             CCCccEEEeccccccccce---------------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceeccee
Q psy18191         61 YPKPICLRFQDLLPQSKQG---------------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVH  125 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g---------------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~  125 (238)
                      .|.+.+.|++++..+....               ...|.+.++..+|+|.|+|.+.+. .               ...+.
T Consensus       255 ~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~-~---------------~~~~~  318 (527)
T 3qs9_E          255 NHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH-P---------------SQSAL  318 (527)
T ss_dssp             SSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE-E---------------EEEEE
T ss_pred             CCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC-C---------------CceEE
Confidence            5578899999987543321               124788899999999999887773 0               11122


Q ss_pred             cCCccCCEEEeCC--CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCe
Q psy18191        126 GDGYRVPRITEHP--ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSG  203 (238)
Q Consensus       126 ~~v~~~P~i~~~~--~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G  203 (238)
                      +.+..+|.+...+  ....+.+|+.+.|.|.+.|.|.|.++|+|+|..+....   .....++.|.    |..+..+|+|
T Consensus       319 L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~---~~~~~~~~L~----I~~v~~~D~G  391 (527)
T 3qs9_E          319 VTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ---KGLDNGYSIS----KFCNHKHQPG  391 (527)
T ss_dssp             EEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBC---CBCSSSSEEE----EECCCTTCCS
T ss_pred             EEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCc---ccccCCcEEE----EecCCcccCE
Confidence            2245677776544  34567889999999999999999999999999987531   1222345555    4556999999


Q ss_pred             EEEEEEEeCCCceeEEEEEEEEccCCC
Q psy18191        204 VYWCVARNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       204 ~Y~C~a~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      .|+|.|.|..|... ..+.|.|..+|.
T Consensus       392 ~YtC~A~N~~g~~~-~~~~L~V~~~P~  417 (527)
T 3qs9_E          392 EYIFHAENDDAQFT-KMFTLNIRRKPQ  417 (527)
T ss_dssp             CEEEEEEETTEEEE-EEEEEC--CCCE
T ss_pred             EEEEEEEeCCCcEE-EEEEEEEecCCe
Confidence            99999999999997 489999986653

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.76  E-value=6.7e-18  Score=142.12  Aligned_cols=145  Identities=21%  Similarity=0.199  Sum_probs=107.6

Q ss_pred             CCccEEEecccccccc---ceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCC
Q psy18191         62 PKPICLRFQDLLPQSK---QGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHP  138 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~---~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~  138 (238)
                      +.+.+.|++++..+..   .....|.+.++..+|+|.|+|.+.+..  |.           ......+.+..+|.+...+
T Consensus       235 p~~~i~W~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~--g~-----------~~~~~~l~V~~~p~~~~~~  301 (382)
T 1cs6_A          235 PVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIK--GR-----------DTYQGRIIIHAQPDWLDVI  301 (382)
T ss_dssp             SCCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETT--EE-----------EEEEEEEEEEEEEEEEECC
T ss_pred             CCCEEEEEECCcccccEEecCCcEEEEccCChhhCEEEEEEEEcCC--Ce-----------EEEEEEEEEecCCCcccCC
Confidence            4668889887664322   122356677788888888887766532  21           1112223355788888888


Q ss_pred             CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeE
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARS  218 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s  218 (238)
                      ....+.+|+.+.|.|.+.|.|.|.+.|+++|..+...   .++...++.|.    |..+..+|+|.|+|.|.|..|... 
T Consensus       302 ~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~---~~~~~~~~~L~----i~~v~~~d~G~Y~C~a~N~~G~~~-  373 (382)
T 1cs6_A          302 TDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQ---NRIEVSGGELR----FSKLVLEDSGMYQCVAENKHGTVY-  373 (382)
T ss_dssp             CCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCC---SSEEEETTEEE----ESSCCGGGCEEEEEEEEETTEEEE-
T ss_pred             CccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCC---ceEEEECCEEE----ECcCCcccCEEEEEEEEeCCCeEE-
Confidence            8889999999999999999999999999999988743   33344566665    566699999999999999999997 


Q ss_pred             EEEEEEEcc
Q psy18191        219 KNATLDVAG  227 (238)
Q Consensus       219 ~~~~L~V~~  227 (238)
                      ..+.|.|.+
T Consensus       374 ~~~~l~V~a  382 (382)
T 1cs6_A          374 ASAELTVQA  382 (382)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEeC
Confidence            599999863

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.76  E-value=4.2e-18  Score=137.97  Aligned_cols=151  Identities=21%  Similarity=0.287  Sum_probs=101.8

Q ss_pred             CCccEEEeccccccccc-e--E-----EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCE
Q psy18191         62 PKPICLRFQDLLPQSKQ-G--L-----MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPR  133 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~-g--~-----~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~  133 (238)
                      +.+.+.|++++..+... .  .     ..|.+.++...|+|.|+|.+.+... |..          ....+...+..+|.
T Consensus       128 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~-~~~----------~~~~~~l~v~~~p~  196 (291)
T 1qz1_A          128 LPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR-GEI----------NFKDIQVIVNVPPT  196 (291)
T ss_dssp             SCCEEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGG-TEE----------EEEEEEEEEEEEEE
T ss_pred             CCCEEEEEECCEEcccCCCceEEEccCCcEEEccCccccCeEEEEEEEecCC-Cce----------eeEEEEEEEecCCc
Confidence            46789999988644321 1  1     2456677888888888876654211 110          01111222446777


Q ss_pred             EEeCCC--ceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCC--ccEEEecC-CcEEEEEeecCCCCCCCeEEEEE
Q psy18191        134 ITEHPA--SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG--SHRILLPA-GSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       134 i~~~~~--~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~--~~~~~~~~-~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      +...+.  ...+.+|+.+.|.|.+.|.|.|.+.|+++|..+.....  .......+ ..|.    |..+..+|+|.|+|.
T Consensus       197 ~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~----i~~v~~~d~G~Y~C~  272 (291)
T 1qz1_A          197 VQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELT----IRNVDKNDEAEYVCI  272 (291)
T ss_dssp             EEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEE----ECSCCGGGCEEEEEE
T ss_pred             ccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEE----EEecChhcCEEEEEE
Confidence            766533  45678899999999999999999999999998875311  12222222 2344    667799999999999


Q ss_pred             EEeCCCceeEEEEEEEEccC
Q psy18191        209 ARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~~  228 (238)
                      |.|..|... ..+.|.|..+
T Consensus       273 a~N~~G~~~-~~~~l~V~~k  291 (291)
T 1qz1_A          273 AENKAGEQD-ASIHLKVFAK  291 (291)
T ss_dssp             EEETTEEEE-EEEEEEEECC
T ss_pred             EEeCCCceE-EEEEEEEEcC
Confidence            999999986 5999998753

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.76  E-value=1.3e-17  Score=129.37  Aligned_cols=143  Identities=13%  Similarity=0.113  Sum_probs=98.7

Q ss_pred             cEEEeccccccccceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEe
Q psy18191         65 ICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVP  144 (238)
Q Consensus        65 ~~~w~~~~~~~~~~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~  144 (238)
                      .+.|++++..+.... ..|.+.++..+|+|.|+|.+.+...          ...     +.+.+..+|.+...+. ..+.
T Consensus        39 ~v~W~k~g~~l~~~~-~~L~i~~v~~~D~G~Y~C~a~n~~~----------s~~-----~~l~V~~~p~~~~~~~-~~v~  101 (204)
T 3sgj_C           39 STQWFHNESLISSQA-SSYFIDAATVDDSGEYRCQTQLSTL----------SDP-----VQLEVHIGWLLLQAPR-WVFK  101 (204)
T ss_dssp             CEEEEETTEEESCCS-SEEEESSCCGGGCEEEEEEETTSBC----------CCC-----EEEEEECSSEEEECSC-SEEE
T ss_pred             EEEEEECCEEcccCc-cEEEEecccccCCEEEEEEeCCCcc----------ccc-----EEEEEecCceEecCCc-eeEe
Confidence            499999988655433 4577888999999999987765211          011     1122445666666554 7788


Q ss_pred             CCCcEEEEEEEeee-CCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEE
Q psy18191        145 RHEPTTLNCKADGY-PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL  223 (238)
Q Consensus       145 ~G~~~~L~C~~~g~-P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L  223 (238)
                      +|+.+.|.|.+.+. |.+.+.|+++|..+...       ..++.|.    |..+..+|+|.|+|.|.|..+...+..+.|
T Consensus       102 ~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~-------~~~~~L~----i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l  170 (204)
T 3sgj_C          102 EEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF-------HHNSDFY----IPKATLKDSGSYFCRGLVGSKNVSSETVQI  170 (204)
T ss_dssp             TTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-------EECCCEE----ESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred             CCCcEEEEEEecCCCCCceEEEEECCcEeecc-------cCCceEE----ECcCCcccCEEEEEEEEeCCCceecCcEEE
Confidence            99999999999665 56889999999887531       2345665    566699999999999999665555678999


Q ss_pred             EEccCCCCCCCC
Q psy18191        224 DVAGKISTATDC  235 (238)
Q Consensus       224 ~V~~~~~~~~~~  235 (238)
                      .|.++++.|...
T Consensus       171 ~V~~~~~~P~i~  182 (204)
T 3sgj_C          171 TITQGLAVSTIS  182 (204)
T ss_dssp             EEEC--------
T ss_pred             EEeCcCCCCccc
Confidence            999888766543

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.75  E-value=3.6e-17  Score=127.66  Aligned_cols=149  Identities=16%  Similarity=0.185  Sum_probs=108.9

Q ss_pred             CCCccEEEeccccccccceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceec----------CCcc
Q psy18191         61 YPKPICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHG----------DGYR  130 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~----------~v~~  130 (238)
                      .+.+.+.|++++..+.......|.+.++...|+|.|+|.+.+...  .   ....  ...+.....          ....
T Consensus        45 ~p~~~v~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~--~---~~s~--~~~l~V~~~~~~~~~~~~~~~~~  117 (218)
T 3k0w_A           45 HPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFT--F---EFSQ--WSQLDVCDIPESFQRSVDGVSES  117 (218)
T ss_dssp             TTSSEEEEEETTEECTTCCSSEEEETTCCGGGCEEEEEEEECTTC--C---EECC--CEEEEEECCCGGGCTTCCSBCCS
T ss_pred             CCCCEEEEEECCEECCCCCCCEEEEccCChhhCeEeEEEEEcCCC--C---ceee--EEEEEEEccCcccccccccccCC
Confidence            346789999998866555445678889999999999988776422  1   0000  011110000          0123


Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...        ..+.|.    |..+..+|+|.|+|.|.
T Consensus       118 ~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~--------~~~~L~----i~~v~~~d~G~Y~C~a~  185 (218)
T 3k0w_A          118 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE--------TKKLYM----VPYVDLEHQGTYWCHVY  185 (218)
T ss_dssp             SCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTC--------CSSEEE----ESSCCGGGCEEEEEEEE
T ss_pred             CceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCC--------CCCEEE----EeecChhcCEEEEEEEE
Confidence            478888888899999999999999999999999999999887643        123343    66779999999999999


Q ss_pred             eCCCceeEEEEEEEEccC
Q psy18191        211 NELGFARSKNATLDVAGK  228 (238)
Q Consensus       211 N~~G~~~s~~~~L~V~~~  228 (238)
                      |..|...+..+.|.|...
T Consensus       186 n~~g~~~s~~~~l~V~~~  203 (218)
T 3k0w_A          186 NDRDSQDSKKVEIIIDEL  203 (218)
T ss_dssp             CSSCEEECCCEEEEECC-
T ss_pred             cCCCCceeeeEEEEEeCC
Confidence            999996667889998764

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.75  E-value=3.6e-17  Score=137.85  Aligned_cols=157  Identities=18%  Similarity=0.205  Sum_probs=112.5

Q ss_pred             CCCccEEEecc--cccccc-----c---------eEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecce
Q psy18191         61 YPKPICLRFQD--LLPQSK-----Q---------GLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGV  124 (238)
Q Consensus        61 ~~~~~~~w~~~--~~~~~~-----~---------g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~  124 (238)
                      .|.+.+.|+++  +..+..     .         +...|.+.++..+|+|.|+|.+.+..  |.           ....+
T Consensus        27 ~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~--g~-----------~~~~~   93 (389)
T 2jll_A           27 EPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI--GG-----------HQKSM   93 (389)
T ss_dssp             SSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSS--CE-----------EEEEE
T ss_pred             ccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCC--CC-----------cceEE
Confidence            45678999998  654432     1         12467788888999999998877642  21           11122


Q ss_pred             ecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeE
Q psy18191        125 HGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       125 ~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~  204 (238)
                      .+.+..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+............++....+ .|..+...|+|.
T Consensus        94 ~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L-~i~~~~~~d~G~  172 (389)
T 2jll_A           94 YLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMIL-EIAPTSDNDFGR  172 (389)
T ss_dssp             EEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEE-EECCCSTTSSEE
T ss_pred             EEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCEEEE-EECCCChhhCEE
Confidence            3335578888776666678999999999999999999999999999887642223333322221111 267779999999


Q ss_pred             EEEEEEeCCCceeEEEEEEEEccCCCCC
Q psy18191        205 YWCVARNELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       205 Y~C~a~N~~G~~~s~~~~L~V~~~~~~~  232 (238)
                      |+|.|.|..|... ..+.|.+...+..|
T Consensus       173 Y~C~a~N~~G~~~-~~~~l~v~~~P~~P  199 (389)
T 2jll_A          173 YNCTATNHIGTRF-QEYILALADVPSSP  199 (389)
T ss_dssp             EEEEEEETTEEEE-EEEEEEECCCCCCC
T ss_pred             EEEEEEcCCCcEE-EEEEEEecCCCCCC
Confidence            9999999999986 48889887777665

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.75  E-value=7.2e-18  Score=142.34  Aligned_cols=144  Identities=22%  Similarity=0.343  Sum_probs=107.6

Q ss_pred             CCCccEEEeccccccccc---eE--------EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQ---GL--------MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGY  129 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~---g~--------~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~  129 (238)
                      .|.+.+.|++++..+...   .+        ..|.+.++..+|+|.|+|.+.+..  |....          ..+.+.+.
T Consensus       239 ~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~--g~~~~----------~~~~l~V~  306 (395)
T 1bih_A          239 NPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGV--GKPQK----------HSLKLTVV  306 (395)
T ss_dssp             SSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSS--SSCEE----------EEEEEEEE
T ss_pred             CCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCC--CCceE----------EEEEEEEE
Confidence            456789999998755331   11        157777888888888887776642  21111          12233355


Q ss_pred             cCCEEEeCCCc-eEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        130 RVPRITEHPAS-AVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       130 ~~P~i~~~~~~-~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      .+|.+...+.. ..+.+|+.+.|.|.+.|.|.|.+.|+++|..+...    ++...++.|.    |..+..+|+|.|+|.
T Consensus       307 ~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~----~~~~~~~~L~----i~~~~~~d~G~Y~C~  378 (395)
T 1bih_A          307 SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG----RATVTDSGLV----IKGVKNGDKGYYGCR  378 (395)
T ss_dssp             EEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS----SEEEETTEEE----ESSCCSTTCEEEEEE
T ss_pred             cCCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC----ceEEECCEEE----EeeCCcccCEEEEEE
Confidence            78999888777 78899999999999999999999999999988642    3334455554    667799999999999


Q ss_pred             EEeCCCceeEEEEEEEE
Q psy18191        209 ARNELGFARSKNATLDV  225 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V  225 (238)
                      |.|..|... ..+.|.|
T Consensus       379 a~N~~G~~~-~~~~l~V  394 (395)
T 1bih_A          379 ATNEHGDKY-FETLVQV  394 (395)
T ss_dssp             EEETTEEEE-EEEEEEE
T ss_pred             EEccCCCce-EEEEEEE
Confidence            999999997 4888887

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.75  E-value=4.7e-18  Score=137.68  Aligned_cols=152  Identities=22%  Similarity=0.269  Sum_probs=96.1

Q ss_pred             CCccEEEecccccccc--c-eE-----EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCE
Q psy18191         62 PKPICLRFQDLLPQSK--Q-GL-----MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPR  133 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~--~-g~-----~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~  133 (238)
                      +.+.+.|++++..+..  . ..     ..|.+.++...|+|.|+|.+.+... |.          .....+...+..+|.
T Consensus       126 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~-~~----------~~~~~~~~~v~~~p~  194 (291)
T 2wim_A          126 PAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR-GE----------IDFRDIIVIVNVPPA  194 (291)
T ss_dssp             SCCEEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEEEETTT-TE----------EEEEEEEEEEEBCCC
T ss_pred             CCCEEEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEEEECCC-Ce----------eEEeeEEEEeccCCc
Confidence            4677899998764432  1 11     1356667777788888876544211 10          011111222445676


Q ss_pred             EEeCCC--ceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        134 ITEHPA--SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       134 i~~~~~--~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      +...+.  ...+.+|+.+.|.|.+.|.|.|.+.|+++|..+... ........++.|.    |..+..+|+|.|+|.|.|
T Consensus       195 ~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~~~~~~~L~----i~~~~~~d~G~Y~C~a~N  269 (291)
T 2wim_A          195 ISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN-EKYILKGSNTELT----VRNIINSDGGPYVCRATN  269 (291)
T ss_dssp             CBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCT-TTEEECSTTCEEE----EESCCSTTCEEEEEEEEE
T ss_pred             cccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCC-ccEEEcCCccEEE----EeeCCcccCEEEEEEEEE
Confidence            655433  345678999999999999999999999999988753 1222222234455    556699999999999999


Q ss_pred             CCCceeEEEEEEEEccCCC
Q psy18191        212 ELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       212 ~~G~~~s~~~~L~V~~~~~  230 (238)
                      ..|... ..+.|.|..++.
T Consensus       270 ~~G~~~-~~~~l~v~~~~~  287 (291)
T 2wim_A          270 KAGEDE-KQAFLQVFVQHH  287 (291)
T ss_dssp             TTEEEE-EEEEEEC-----
T ss_pred             CCCcee-eeEEEEEEEecc
Confidence            999997 599999877653

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.75  E-value=1.4e-17  Score=127.00  Aligned_cols=151  Identities=11%  Similarity=0.075  Sum_probs=102.0

Q ss_pred             CCCccEEEeccccccccce---------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccC
Q psy18191         61 YPKPICLRFQDLLPQSKQG---------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRV  131 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g---------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~  131 (238)
                      .+.+.+.|++++..+....         ...|.+..+..+|+|.|+|.+.+..  |....           ...+.+..+
T Consensus        34 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~--~~~~~-----------~~~l~v~~~  100 (197)
T 3lcy_A           34 RPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEV--GEVET-----------SSKLLLQAT  100 (197)
T ss_dssp             ESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSS--CEEEE-----------EEEEEEEEE
T ss_pred             CCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCC--CceeE-----------EEEEEEEcC
Confidence            4566899999887543321         2367778888889999998766532  21111           111113344


Q ss_pred             CEEEeC---CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCC-CCCeEEEE
Q psy18191        132 PRITEH---PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKD-TDSGVYWC  207 (238)
Q Consensus       132 P~i~~~---~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~-~d~G~Y~C  207 (238)
                      |.+...   +....+..|+.+.|.|.+.|.|.|.+.|++++..+...  ........+... ...|..+.. +|+|.|+|
T Consensus       101 p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~--~~~~~~~~~~~~-~L~i~~~~~~~d~G~Y~C  177 (197)
T 3lcy_A          101 PQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNS--ENITIENTEHYT-HLVMKNVQRKTHAGKYKV  177 (197)
T ss_dssp             EEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC--SSEEEEECSSEE-EEEESSCCHHHHCEEEEE
T ss_pred             CCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCC--CceEEEEcCCEE-EEEEccccchhhCceEEE
Confidence            554322   24567789999999999999999999999999988743  222222222211 223667774 79999999


Q ss_pred             EEEeCCCceeEEEEEEEEccC
Q psy18191        208 VARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~~~  228 (238)
                      .|.|..|... ..+.|.|.++
T Consensus       178 ~a~n~~g~~~-~~~~l~V~~k  197 (197)
T 3lcy_A          178 QLSNVFGTVD-AILDVEIQDK  197 (197)
T ss_dssp             EEECSSCEEE-EEEEEEEECC
T ss_pred             EEEcCcCceE-EEEEEEEecC
Confidence            9999999996 5999998753

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.75  E-value=1.8e-17  Score=125.67  Aligned_cols=149  Identities=23%  Similarity=0.291  Sum_probs=98.5

Q ss_pred             CCCccEEEecccccccc---ceE-----EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCC
Q psy18191         61 YPKPICLRFQDLLPQSK---QGL-----MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVP  132 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~---~g~-----~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P  132 (238)
                      .+.+.+.|++++..+..   ...     ..|.+.++...|+|.|+|...+... +. .         ....+...+..+|
T Consensus        29 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~-~---------~~~~~~l~v~~~p   97 (189)
T 2v5t_A           29 SPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR-GE-I---------DFRDIIVIVNVPP   97 (189)
T ss_dssp             SSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTT-TE-E---------EEEEEEEEEEEEE
T ss_pred             CCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCC-Cc-e---------EEEEEEEEecCCC
Confidence            35678999998874432   111     1367778888889999876554321 10 0         0011112244567


Q ss_pred             EEEeCCC--ceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        133 RITEHPA--SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       133 ~i~~~~~--~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      .+...+.  ...+.+|+.+.|.|.+.|.|.|.+.|+++|..+... ........++.|.    |..+..+|+|.|+|.|.
T Consensus        98 ~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~-~~~~~~~~~~~L~----i~~~~~~d~G~Y~C~a~  172 (189)
T 2v5t_A           98 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN-EKYILKGSNTELT----VRNIINSDGGPYVCRAT  172 (189)
T ss_dssp             EEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCS-SSEEEETTTTEEE----ECSCCGGGCEEEEEEEE
T ss_pred             CcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCC-CcEEEecCCCEEE----EcCCChhhCeeEEEEEE
Confidence            7766544  346678999999999999999999999999988753 2222222344455    56669999999999999


Q ss_pred             eCCCceeEEEEEEEEc
Q psy18191        211 NELGFARSKNATLDVA  226 (238)
Q Consensus       211 N~~G~~~s~~~~L~V~  226 (238)
                      |..|... ..+.|.|.
T Consensus       173 n~~g~~~-~~~~l~V~  187 (189)
T 2v5t_A          173 NKAGEDE-KQAFLQVF  187 (189)
T ss_dssp             ETTEEEE-EEEEEEEE
T ss_pred             eCCCcee-EEEEEEEE
Confidence            9999996 48888874

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.75  E-value=4e-18  Score=131.68  Aligned_cols=154  Identities=23%  Similarity=0.366  Sum_probs=102.4

Q ss_pred             CCCccEEEeccccccccc-------------eEE---EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecce
Q psy18191         61 YPKPICLRFQDLLPQSKQ-------------GLM---YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGV  124 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~-------------g~~---~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~  124 (238)
                      .+.+.+.|++++..+...             +..   .+.+.++...|+|.|+|.+.+...      .... ....+.  
T Consensus        36 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g------~~~~-~~~~l~--  106 (212)
T 2v9r_A           36 RPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLG------EAVS-HDASLE--  106 (212)
T ss_dssp             ESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETTE------EEEC-CCEEEE--
T ss_pred             CCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCCC------ceee-cceEEE--
Confidence            456789999988644321             111   223346678889999987665322      1000 011111  


Q ss_pred             ecCCc-cCCEEEeCCCceEEeCCCcEEEEEEE-eeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCC
Q psy18191        125 HGDGY-RVPRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDS  202 (238)
Q Consensus       125 ~~~v~-~~P~i~~~~~~~~~~~G~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~  202 (238)
                         +. .+|.+...+....+..|+.+.|.|.+ .|.|.|.+.|++++..+...  ..+....++.|.    |..+..+|+
T Consensus       107 ---V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~--~~~~~~~~~~L~----i~~~~~~d~  177 (212)
T 2v9r_A          107 ---VAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDK--DERITIRGGKLM----ITYTRKSDA  177 (212)
T ss_dssp             ---ECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTT--STTEEEETTEEE----ESSCCGGGC
T ss_pred             ---EEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCC--cceEEccCCeEE----EeeCCHhhC
Confidence               11 23444455667889999999999998 99999999999999998753  223334566665    566699999


Q ss_pred             eEEEEEEEeCCCceeEEEEEEEEccCCCCC
Q psy18191        203 GVYWCVARNELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       203 G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~~  232 (238)
                      |.|+|.|.|..|...+..+.|.|..+|...
T Consensus       178 G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~  207 (212)
T 2v9r_A          178 GKYVCVGTNMVGERESEVAELTVLERPSFV  207 (212)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEEC-----
T ss_pred             eeEEEEEecccCceecceEEEEEEeCchHh
Confidence            999999999999986545899998877654

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.75  E-value=3.6e-17  Score=114.88  Aligned_cols=102  Identities=18%  Similarity=0.228  Sum_probs=81.5

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .+|.|...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+... ....+....+..  .+.|..+..+|+|.|+|.|
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~-~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a   82 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES-EHMKVENSENGS--KLTILAARQEHCGCYTLLV   82 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCS-SSEEEEECSSEE--EEEETTCCTTTCEEEEEEE
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCC-CCEEEEEcCCEE--EEEECCCChhcCEEEEEEE
Confidence            5788888888999999999999999999999999999999888643 222222222222  2237888999999999999


Q ss_pred             EeCCCceeEEEEEEEEccCCCCCCCC
Q psy18191        210 RNELGFARSKNATLDVAGKISTATDC  235 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V~~~~~~~~~~  235 (238)
                      .|..|... ..+.|.|..++.+|...
T Consensus        83 ~N~~g~~~-~~~~l~V~~~p~~P~~p  107 (114)
T 2cqv_A           83 ENKLGSRQ-AQVNLTVVDKPDPPAGT  107 (114)
T ss_dssp             ECSSCEEE-CCEEEEEECSCSCCCCC
T ss_pred             EECCCcEE-EEEEEEEECCCCCCCCC
Confidence            99999987 49999999888776543

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.74  E-value=3.4e-17  Score=112.03  Aligned_cols=97  Identities=27%  Similarity=0.464  Sum_probs=78.1

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      ..+|.|...|....+.+|+++.|.|.+.|.|.|.+.|+++|..+............++...+  .|..+..+|+|.|+|.
T Consensus         3 ~~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L--~i~~v~~~D~G~Y~C~   80 (100)
T 2kdg_A            3 MGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL--IFEVVRASDAGAYACV   80 (100)
T ss_dssp             CEEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEE--EESSCCGGGCEEEEEE
T ss_pred             CCCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEE--EECCCCcccCEEEEEE
Confidence            46788888888899999999999999999999999999999988764222333333442222  2677899999999999


Q ss_pred             EEeCCCceeEEEEEEEEccC
Q psy18191        209 ARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~~  228 (238)
                      |.|..|... ..+.|.|..+
T Consensus        81 a~n~~g~~~-~~~~l~V~~~   99 (100)
T 2kdg_A           81 AKNRAGEAT-FTVQLDVLAK   99 (100)
T ss_dssp             EEETTEEEE-EEEEEEEECC
T ss_pred             EEcCCCeEE-EEEEEEEEec
Confidence            999999986 5999999765

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.74  E-value=6e-17  Score=110.59  Aligned_cols=95  Identities=24%  Similarity=0.305  Sum_probs=76.4

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEE-ecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRIL-LPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      .+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+... ...... ..++...+  .|..+..+|+|.|+|.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~-~~~~~~~~~~~~~~L--~i~~v~~~D~G~Y~C~   80 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERS-DRIYWYWPEDNVCEL--VIRDVTGEDSASIMVK   80 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC-SSEEEEEEETTEEEE--EECSCCGGGCEEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCC-CCEEEEEcCCCEEEE--EECCCCcCCCEEEEEE
Confidence            5788988888999999999999999999999999999999988753 222222 22332222  2677899999999999


Q ss_pred             EEeCCCceeEEEEEEEEccC
Q psy18191        209 ARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~~  228 (238)
                      |.|..|...+ .+.|.|.++
T Consensus        81 a~N~~g~~~~-~~~l~V~~~   99 (99)
T 1g1c_A           81 AINIAGETSS-HAFLLVQAK   99 (99)
T ss_dssp             EEETTEEEEE-EEEEEEECC
T ss_pred             EEECCCcEEE-EEEEEEecC
Confidence            9999999974 999998753

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.74  E-value=4.5e-17  Score=132.12  Aligned_cols=158  Identities=15%  Similarity=0.094  Sum_probs=101.1

Q ss_pred             CC-ccEEE-eccccccccceE------EEEEcCCCCCCCCC-ceEEEeCCCcccCCceEEeCCCCcceecceecCCccCC
Q psy18191         62 PK-PICLR-FQDLLPQSKQGL------MYLVGSQASPDYPN-RFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVP  132 (238)
Q Consensus        62 ~~-~~~~w-~~~~~~~~~~g~------~~l~~~~~~~~~~g-~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P  132 (238)
                      |. +.+.| ++++..+.....      ..|.+.++..+|+| .|+|.+.+...      ... .....+. +......+|
T Consensus       118 p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~------~~~-s~~~~l~-V~~~~~~~P  189 (290)
T 2o26_X          118 PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGT------WLH-SDKFTLK-VREAIKAIP  189 (290)
T ss_dssp             CSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTE------EEE-CCCEEEE-EECCCCSCC
T ss_pred             CCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEECCc------eEE-eEEEEEE-EEeCCCCCC
Confidence            45 78999 467765543221      14566778888888 88877665311      100 0111111 111134789


Q ss_pred             EEEeCCCceEEeCCCcEEEEEEEeeeCCCE-EEEEeCCEEe----eccCCccEEEec-CCcEEEEEeecCCCCCCCeEEE
Q psy18191        133 RITEHPASAVVPRHEPTTLNCKADGYPEPR-IEWYKDGSLV----SAEIGSHRILLP-AGSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       133 ~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~-i~W~~~g~~l----~~~~~~~~~~~~-~~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      .+...+....+.+|+.+.|.|.+.|.|.|. +.|++++..+    ... ........ .......+.|..+..+|+|.|+
T Consensus       190 ~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~  268 (290)
T 2o26_X          190 VVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVK-HNSWHRGDFNYERQETLTISSARVDDSGVFM  268 (290)
T ss_dssp             EEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEE-CCEEEEETTEEEEEEEEEESSCCSSSCEEEE
T ss_pred             ccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeec-ccccccCceeeEEEEEEEEcCCCcccCeEEE
Confidence            998887788899999999999999999996 9999998773    221 11111100 0011112237788999999999


Q ss_pred             EEEEeCCCceeEEEEEEEEccCC
Q psy18191        207 CVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       207 C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      |.|.|..|... ..+.|.|..+|
T Consensus       269 C~a~N~~g~~~-~~~~l~V~~~P  290 (290)
T 2o26_X          269 CYANNTFGSAN-VTTTLKVVEKG  290 (290)
T ss_dssp             EEEECSSCEEE-EEEEECC----
T ss_pred             EEEeCCCCcEE-EEEEEEEEeCC
Confidence            99999999996 59999987654

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.74  E-value=1.1e-16  Score=121.30  Aligned_cols=145  Identities=16%  Similarity=0.124  Sum_probs=97.5

Q ss_pred             CccEEEeccccccccce----EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCC
Q psy18191         63 KPICLRFQDLLPQSKQG----LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHP  138 (238)
Q Consensus        63 ~~~~~w~~~~~~~~~~g----~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~  138 (238)
                      ...+.|++++..+....    ...+.+.  ..+|+|.|+|.+.+..             .   ..+.+.+..+|.+...+
T Consensus        29 ~~~~~W~k~~~~l~~~~~~~~~~~l~i~--~~~d~G~Y~C~~~n~~-------------~---~~~~l~V~~~P~~~~~~   90 (184)
T 3b5h_A           29 VTGHRWLKGGVVLKEDALPGQKTEFKVD--SDDQWGEYSCVFLPEP-------------M---GTANIQLHGPPRVKAVK   90 (184)
T ss_dssp             CCEEEEESSSEEEECTTCCCSEEEEEEC--GGGCCEEEEEEEESTT-------------S---CEEEEEECCSCCCEESC
T ss_pred             ceEEEEEeCCEEeecccccCCcEEEEEe--chhhCeEEEEEEECCc-------------C---cEEEEEEecCCceeecC
Confidence            34899999987554321    2233333  4677888887665411             1   11122255788888888


Q ss_pred             CceEEeCCCcEEEEEEEeeeC-CCEEEEEe---CCEEeec-cCCccEEEecCCcEEEEEeecCCC-CCCCeEEEEEEEeC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYP-EPRIEWYK---DGSLVSA-EIGSHRILLPAGSLFFLSLVHGKK-DTDSGVYWCVARNE  212 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P-~p~i~W~~---~g~~l~~-~~~~~~~~~~~~~l~~~~vi~~v~-~~d~G~Y~C~a~N~  212 (238)
                      ....+.+|+.+.|.|.+.|.| .|.+.|++   ++..+.. ....+......+.... +.|..+. .+|+|.|+|.|.|.
T Consensus        91 ~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-L~i~~v~~~~d~G~Y~C~a~N~  169 (184)
T 3b5h_A           91 SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSE-LHIENLNMEADPGQYRCNGTSS  169 (184)
T ss_dssp             SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEE-EEECSCCTTTSSEEEEEEEEET
T ss_pred             CCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeE-EEEeeccccccCceEEEEEEeC
Confidence            778899999999999999999 79999999   4544332 2112233222332211 2267779 89999999999999


Q ss_pred             CCceeEEEEEEEEcc
Q psy18191        213 LGFARSKNATLDVAG  227 (238)
Q Consensus       213 ~G~~~s~~~~L~V~~  227 (238)
                      .|... ..+.|.|.+
T Consensus       170 ~g~~~-~~~~l~V~~  183 (184)
T 3b5h_A          170 KGSDQ-AIITLRVRS  183 (184)
T ss_dssp             TEEEE-EEEEEEEC-
T ss_pred             CCcce-EEEEEEEec
Confidence            99997 489999865

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.74  E-value=4.6e-17  Score=133.30  Aligned_cols=163  Identities=15%  Similarity=0.213  Sum_probs=109.5

Q ss_pred             CCCccEEEeccccccccce---------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcce---------ec
Q psy18191         61 YPKPICLRFQDLLPQSKQG---------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPL---------FP  122 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g---------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~---------~~  122 (238)
                      .+.+.+.|++++..+....         ...|.+.++...|+|.|+|.+.+.  .|.............         ..
T Consensus       135 ~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~--~g~~~~~~~l~v~~~~~~~~~~~~~~  212 (317)
T 2y25_A          135 VEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDG--KTGHQKTVDLSGQAYDEAYAEFQRLK  212 (317)
T ss_dssp             CSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECS--SCEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeC--CceEEEEEEEeeeeccccchhhcccC
Confidence            4678899999987654321         235888899999999999887763  332222211110000         00


Q ss_pred             ceecCCccCCEEEeC-CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCC
Q psy18191        123 GVHGDGYRVPRITEH-PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       123 ~~~~~v~~~P~i~~~-~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d  201 (238)
                      ........+|.+... +....+.+|+.+.|.|.+.|.|.|.+.|+++|..+... ....+...++....+ .|..+..+|
T Consensus       213 ~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~~~~~~~~L-~i~~v~~~d  290 (317)
T 2y25_A          213 QAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASD-DHCNLKFEAGRTAYF-TINGVSTAD  290 (317)
T ss_dssp             HHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCC-SSEEECCBTTTEEEE-EEBSCCSTT
T ss_pred             CcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCC-CcEEEEEcCCCEEEE-EECCCCHHH
Confidence            000112235566554 56678999999999999999999999999999988753 222222232422222 367789999


Q ss_pred             CeEEEEEEEeCCCceeEEEEEEEEccC
Q psy18191        202 SGVYWCVARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       202 ~G~Y~C~a~N~~G~~~s~~~~L~V~~~  228 (238)
                      +|.|+|.|.|..|... ..+.|.|..+
T Consensus       291 ~G~Y~C~a~N~~g~~~-~~~~l~V~~P  316 (317)
T 2y25_A          291 SGKYGLVVKNKYGSET-SDFTVSVFIP  316 (317)
T ss_dssp             CEEEEEEEEETTEEEE-EEEEEEEECC
T ss_pred             CEEEEEEEEeCCCeEE-EEEEEEEEcC
Confidence            9999999999999996 5999998754

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.73  E-value=2.3e-16  Score=127.32  Aligned_cols=153  Identities=20%  Similarity=0.234  Sum_probs=109.7

Q ss_pred             CCccEEEeccccccccce---------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCC
Q psy18191         62 PKPICLRFQDLLPQSKQG---------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVP  132 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~g---------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P  132 (238)
                      +.+.+.|++++..+...+         ...|.+.++...|+|.|+|.+.+..  |..           ...+.+.+..+|
T Consensus        33 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~--g~~-----------~~~~~l~V~~~p   99 (284)
T 2rik_A           33 APIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA--GKD-----------SCSAQLGVQEPP   99 (284)
T ss_dssp             SCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT--EEE-----------EEEEEEEEECCC
T ss_pred             CCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECC--ceE-----------EEEEEEEccCCC
Confidence            456899999987554322         2467788889999999998776532  211           111222355678


Q ss_pred             EEEeCC-CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        133 RITEHP-ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       133 ~i~~~~-~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      .+...+ ....+.+|+.+.|.|.+.|.|.|.+.|++++..+... .........+...+  .|..+..+|+|.|+|.|.|
T Consensus       100 ~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~L--~i~~~~~~d~G~Y~C~a~n  176 (284)
T 2rik_A          100 RFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQES-SKFRMSFVESVAVL--EMYNLSVEDSGDYTCEAHN  176 (284)
T ss_dssp             EEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCS-SSEEEEEETTEEEE--EECSCCGGGCEEEEEEEEC
T ss_pred             cccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCC-CcEEEEEcCCEEEE--EECCCCcccCEEEEEEEEc
Confidence            877654 3466899999999999999999999999999988753 22222222332222  2677799999999999999


Q ss_pred             CCCceeEEEEEEEEccCCCC
Q psy18191        212 ELGFARSKNATLDVAGKIST  231 (238)
Q Consensus       212 ~~G~~~s~~~~L~V~~~~~~  231 (238)
                      ..|... ..+.|.|..++..
T Consensus       177 ~~g~~~-~~~~l~V~~~p~~  195 (284)
T 2rik_A          177 AAGSAS-SSTSLKVKEPPVF  195 (284)
T ss_dssp             SSCEEE-EEEEEEEECCCBC
T ss_pred             CCCcee-EEEEEEEecCCcc
Confidence            999986 5999999876643

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.73  E-value=1e-16  Score=130.69  Aligned_cols=156  Identities=19%  Similarity=0.268  Sum_probs=109.0

Q ss_pred             CCCccEEEeccccccccc-----------eEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQ-----------GLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGY  129 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~-----------g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~  129 (238)
                      .+.+.+.|++++..+...           +...|.+.++..+|+|.|+|.+.+..  |...           ..+.+.+.
T Consensus        31 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~--g~~~-----------~~~~l~V~   97 (305)
T 2nzi_A           31 HPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQG--GSVS-----------GTASLEVE   97 (305)
T ss_dssp             SSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETT--EEEE-----------EEEEEEEC
T ss_pred             CCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCC--CCcc-----------ceEEEEEe
Confidence            456789999998754332           22368888999999999998776532  2111           11112233


Q ss_pred             cCCEEEe-----CCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecC-CCCCCCe
Q psy18191        130 RVPRITE-----HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHG-KKDTDSG  203 (238)
Q Consensus       130 ~~P~i~~-----~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~-v~~~d~G  203 (238)
                      .+|.+..     .+....+..|+.+.|.|.+.|.|.|.+.|++++..+... ....+....+...+  .|.. +...|+|
T Consensus        98 ~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~~l--~i~~~~~~~d~G  174 (305)
T 2nzi_A           98 VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN-GHYQVIVTRSFTSL--VFPNGVERKDAG  174 (305)
T ss_dssp             EEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSS-SSCEEEECSSEEEE--EETTCCCSTTCE
T ss_pred             cCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCC-CcEEEEEcCCceEE--EEecCCccCccE
Confidence            4554432     235678899999999999999999999999999887643 22222222222222  2566 8999999


Q ss_pred             EEEEEEEeCCCceeEEEEEEEEccCCCCCC
Q psy18191        204 VYWCVARNELGFARSKNATLDVAGKISTAT  233 (238)
Q Consensus       204 ~Y~C~a~N~~G~~~s~~~~L~V~~~~~~~~  233 (238)
                      .|+|.|.|..|... ..+.|.|...|.+|.
T Consensus       175 ~Y~C~a~N~~G~~~-~~~~l~v~~~P~~p~  203 (305)
T 2nzi_A          175 FYVVCAKNRFGIDQ-KTVELDVADVPDPPR  203 (305)
T ss_dssp             EEEEEEEETTEEEE-EEEEEEEEBCCCCCE
T ss_pred             EEEEEEEeCCCcee-eEEEEEEecCCCCCC
Confidence            99999999999996 599999998887664

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.73  E-value=1e-16  Score=110.34  Aligned_cols=97  Identities=29%  Similarity=0.372  Sum_probs=78.2

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      +..+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... ....+....+...+  .|..+..+|+|.|+|
T Consensus         5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~-~~~~~~~~~~~~~L--~i~~~~~~D~G~Y~C   81 (103)
T 3qp3_A            5 LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQES-SKIHYTNTSGVLTL--EILDCHTDDSGTYRA   81 (103)
T ss_dssp             TCEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCC-SSEEEEEETTEEEE--EECSCCGGGCEEEEE
T ss_pred             CCCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCC-CCEEEEECCCEEEE--EEcCCCcccCEEEEE
Confidence            456899999889999999999999999999999999999999988753 22222222232222  367889999999999


Q ss_pred             EEEeCCCceeEEEEEEEEccC
Q psy18191        208 VARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~~~  228 (238)
                      .|.|..|... ..+.|.|.+.
T Consensus        82 ~a~N~~G~~~-~~~~l~V~~~  101 (103)
T 3qp3_A           82 VCTNYKGEAS-DYATLDVTGG  101 (103)
T ss_dssp             EEEETTEEEE-EEEEEEEECC
T ss_pred             EEEeCCCcEE-EEEEEEEECC
Confidence            9999999996 5999999764

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.73  E-value=2.1e-17  Score=130.31  Aligned_cols=164  Identities=18%  Similarity=0.214  Sum_probs=102.8

Q ss_pred             CCCccEEEeccccccccce----------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCcc
Q psy18191         61 YPKPICLRFQDLLPQSKQG----------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYR  130 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g----------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~  130 (238)
                      .+.+.+.|++++..+....          ...|.+.++...|+|.|+|.+.+...  .....      ..+. +......
T Consensus        42 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~--~~~~~------~~l~-V~~~~~~  112 (241)
T 3grw_A           42 NPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFG--SIRQT------YTLD-VLERSPH  112 (241)
T ss_dssp             SSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTE--EEEEE------EEEE-EECCCCC
T ss_pred             CCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCC--ceEEE------EEEE-EeccCCC
Confidence            3567899999987554321          12577888999999999987665322  11111      1111 1111223


Q ss_pred             CCEEEe-CCCceEEeCCCcEEEEEEEeeeCCCEEEEEe----CCEEeeccCCccEEE-----ecCCcEEEEEeecCCCCC
Q psy18191        131 VPRITE-HPASAVVPRHEPTTLNCKADGYPEPRIEWYK----DGSLVSAEIGSHRIL-----LPAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       131 ~P~i~~-~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~----~g~~l~~~~~~~~~~-----~~~~~l~~~~vi~~v~~~  200 (238)
                      +|.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|++    ++..+..........     .........+.|..+..+
T Consensus       113 ~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  192 (241)
T 3grw_A          113 RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSER  192 (241)
T ss_dssp             CCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGG
T ss_pred             CceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcc
Confidence            344443 4667888999999999999999999999999    787766432222111     111111222336777999


Q ss_pred             CCeEEEEEEEeCCCceeEEEEEEEEccCCCCCCC
Q psy18191        201 DSGVYWCVARNELGFARSKNATLDVAGKISTATD  234 (238)
Q Consensus       201 d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~~~~  234 (238)
                      |+|.|+|.|.|..|... ..+.|.|..++.++..
T Consensus       193 d~G~Y~C~a~N~~g~~~-~~~~l~V~~~p~~~~~  225 (241)
T 3grw_A          193 DGGEYLCRATNFIGVAE-KAFWLSVHGPRAAEEE  225 (241)
T ss_dssp             GCEEEEEEEECSSCEEE-EEEEEEC---------
T ss_pred             cCcEEEEEEecCcceEE-EEEEEEecCCCCCCcc
Confidence            99999999999999996 5999999988877654

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.73  E-value=7.5e-17  Score=110.11  Aligned_cols=96  Identities=22%  Similarity=0.352  Sum_probs=76.7

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      ..+|.|...+....+.+|+++.|.|.+.|.|.|.+.|++++..+... ........++... .+.|..+..+|+|.|+|.
T Consensus         3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~-~~~~~~~~~~~~~-~L~i~~~~~~D~G~Y~C~   80 (99)
T 1u2h_A            3 KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPD-QRRFAEEAEGGLC-RLRILAAERGDAGFYTCK   80 (99)
T ss_dssp             CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCB-TTEEEEECGGGEE-EEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCC-CCEEEEECCCCEE-EEEEccCCcCCCEEEEEE
Confidence            36788988888999999999999999999999999999999988754 2222222233221 223778899999999999


Q ss_pred             EEeCCCceeEEEEEEEEcc
Q psy18191        209 ARNELGFARSKNATLDVAG  227 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~  227 (238)
                      |.|..|... ..+.|.|.+
T Consensus        81 a~N~~g~~~-~~~~l~V~~   98 (99)
T 1u2h_A           81 AVNEYGARQ-CEARLEVRG   98 (99)
T ss_dssp             EEETTEEEE-EEEEEEEEC
T ss_pred             EEECCCcee-EEEEEEEEC
Confidence            999999996 589999875

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.72  E-value=2.7e-17  Score=128.57  Aligned_cols=159  Identities=19%  Similarity=0.229  Sum_probs=105.6

Q ss_pred             CCCccEEEeccccccccce----------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCcc
Q psy18191         61 YPKPICLRFQDLLPQSKQG----------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYR  130 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g----------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~  130 (238)
                      .+.+.+.|++++..+....          ...|.+.++...|+|.|+|.+.+...  .....      ..+. +......
T Consensus        46 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~--~~~~~------~~l~-V~~~~~~  116 (231)
T 3ojm_B           46 NPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG--SINHT------YHLD-VVERSRH  116 (231)
T ss_dssp             ESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTE--EEEEE------EEEE-EECCCCC
T ss_pred             CCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccC--ccccc------EEEE-EEcCCCC
Confidence            3567899999987554321          12577889999999999987765322  11111      1111 1111223


Q ss_pred             CCEEEeC-CCceEEeCCCcEEEEEEEeeeCCCEEEEEe----CCEEeeccCCccEEEe--------cCCcEEEEEeecCC
Q psy18191        131 VPRITEH-PASAVVPRHEPTTLNCKADGYPEPRIEWYK----DGSLVSAEIGSHRILL--------PAGSLFFLSLVHGK  197 (238)
Q Consensus       131 ~P~i~~~-~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~----~g~~l~~~~~~~~~~~--------~~~~l~~~~vi~~v  197 (238)
                      +|.+... +....+.+|+.+.|.|.+.|.|.|.+.|++    +|..+...........        ..+.|.    |..+
T Consensus       117 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~----i~~~  192 (231)
T 3ojm_B          117 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLA----LFNV  192 (231)
T ss_dssp             CCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEE----ECSC
T ss_pred             CCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEE----EecC
Confidence            4444433 567888999999999999999999999999    7777654322221111        122344    5666


Q ss_pred             CCCCCeEEEEEEEeCCCceeEEEEEEEEccCCCCCC
Q psy18191        198 KDTDSGVYWCVARNELGFARSKNATLDVAGKISTAT  233 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~~~  233 (238)
                      ..+|+|.|+|.|.|..|... ..+.|.|..++.+|.
T Consensus       193 ~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~p~~p~  227 (231)
T 3ojm_B          193 TEADAGEYICKVSNYIGQAN-QSAWLTVLPKQQAPG  227 (231)
T ss_dssp             CGGGCEEEEEEEEETTEEEE-EEEEEEEECCC----
T ss_pred             CHHHCeEEEEEEEeccceEe-eEEEEEEecCCCCCc
Confidence            99999999999999999996 599999998887764

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.72  E-value=2.6e-16  Score=128.54  Aligned_cols=155  Identities=20%  Similarity=0.276  Sum_probs=100.5

Q ss_pred             CCCccEEEeccccccccce----E-----EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccC
Q psy18191         61 YPKPICLRFQDLLPQSKQG----L-----MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRV  131 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g----~-----~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~  131 (238)
                      .+.+.+.|++++.++....    +     ..|.+.++...|+|.|+|.+.+...      ..... ...+.  ......+
T Consensus       135 ~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g------~~~~~-~~~l~--v~~~~~~  205 (304)
T 2yd9_A          135 NPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG------VRYSS-PANLY--VRVQNVA  205 (304)
T ss_dssp             SSCCEEEEEETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTE------EEECC-CEEEE--EECCCEE
T ss_pred             CCCCeEEEEECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCC------CEEec-cEEEE--EEeeccC
Confidence            3467899999887554321    1     1466778888888888877665322      11000 00111  1112367


Q ss_pred             CEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       132 P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      |.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+....  .   ...+.+.+.  |.  ..+|+|.|+|.|.|
T Consensus       206 P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~--~---~~~~~~~L~--i~--~~~d~G~Y~C~a~N  276 (304)
T 2yd9_A          206 PRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPED--D---MPVGRNVLE--LT--DVKDSANYTCVAMS  276 (304)
T ss_dssp             EEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSS--S---CCBSEEEEE--EC--SCCSCEEEEEEEEE
T ss_pred             CcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCcc--c---ccCCcEEEE--Ec--ccccCEEEEEEEEe
Confidence            888888888888999999999999999999999999999886531  1   123444333  22  55799999999999


Q ss_pred             CCCceeEEEEEEEEccCCCCCCC
Q psy18191        212 ELGFARSKNATLDVAGKISTATD  234 (238)
Q Consensus       212 ~~G~~~s~~~~L~V~~~~~~~~~  234 (238)
                      ..|... ..+.|.|.+++.....
T Consensus       277 ~~G~~~-~~~~l~V~~~~~~~~~  298 (304)
T 2yd9_A          277 SLGVIE-AVAQITVKSLPKAGTK  298 (304)
T ss_dssp             TTEEEE-EEEEEC----------
T ss_pred             CCCcEE-EEEEEEEecCcccccc
Confidence            999997 5999999887765543

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.72  E-value=1e-16  Score=135.08  Aligned_cols=138  Identities=20%  Similarity=0.288  Sum_probs=101.8

Q ss_pred             CCCccEEEeccccccc------cc-eE----EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCc
Q psy18191         61 YPKPICLRFQDLLPQS------KQ-GL----MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGY  129 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~------~~-g~----~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~  129 (238)
                      .|.+.+.|++++....      .. .+    ..|.+.++..+|+|.|+|.+.+..  |.           ....+.+.+.
T Consensus       239 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~--g~-----------~~~~~~l~V~  305 (388)
T 2v5m_A          239 FPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSV--GG-----------ESVETVLTVT  305 (388)
T ss_dssp             ESCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSS--CE-----------EEEEEEEEEE
T ss_pred             CCCCEEEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCC--Cc-----------eeEEEEEEEe
Confidence            3577899999743211      01 11    256777888888888888777643  21           1111222355


Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .+|.+...+....+.+|+++.|.|.+.|.|.|.+.|+++|..+...         ++.|.    |..+..+|+|.|+|.|
T Consensus       306 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~---------~~~L~----i~~v~~~d~G~Y~C~a  372 (388)
T 2v5m_A          306 APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS---------ESVLR----IESVKKEDKGMYQCFV  372 (388)
T ss_dssp             EEEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCC---------SSEEE----ESSCCGGGCEEEEEEE
T ss_pred             CCCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccC---------CCEEE----EecCChhhCEEEEEEE
Confidence            6788777778889999999999999999999999999999987642         34444    6667999999999999


Q ss_pred             EeCCCceeEEEEEEEE
Q psy18191        210 RNELGFARSKNATLDV  225 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V  225 (238)
                      .|..|... ..+.|.|
T Consensus       373 ~N~~G~~~-~~~~l~V  387 (388)
T 2v5m_A          373 RNDRESAE-ASAELKL  387 (388)
T ss_dssp             ECSSCEEE-EEEEEEE
T ss_pred             EcCCCcEE-EEEEEEe
Confidence            99999997 4888876

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=6.9e-17  Score=110.61  Aligned_cols=96  Identities=29%  Similarity=0.466  Sum_probs=79.6

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      ...+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... ........++.|.    |..+..+|+|.|+|
T Consensus         5 ~~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~-~~~~~~~~~~~L~----i~~v~~~d~G~Y~C   79 (100)
T 2edj_A            5 SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGR-DPRATIQEQGTLQ----IKNLRISDTGTYTC   79 (100)
T ss_dssp             CCSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSS-CSSCEECTTCCEE----EESCCTTTCCEEEE
T ss_pred             CCCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCC-CCCEEEcCCCEEE----EccCCcccCEEEEE
Confidence            346899998899999999999999999999999999999999888743 2333344567776    45559999999999


Q ss_pred             EEEeCCCceeEEEEEEEEccCC
Q psy18191        208 VARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      .|.|..|... ..+.|.|.+++
T Consensus        80 ~a~n~~g~~~-~~~~l~V~~~~  100 (100)
T 2edj_A           80 VATSSSGETS-WSAVLDVTESG  100 (100)
T ss_dssp             EEECSSCCCB-CCEEEEEESCC
T ss_pred             EEEcCCCCEE-EEEEEEEecCC
Confidence            9999999996 59999998753

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.72  E-value=4.1e-16  Score=136.80  Aligned_cols=154  Identities=15%  Similarity=0.076  Sum_probs=108.9

Q ss_pred             CCcc-EEEeccccc--ccc------------ceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceec
Q psy18191         62 PKPI-CLRFQDLLP--QSK------------QGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHG  126 (238)
Q Consensus        62 ~~~~-~~w~~~~~~--~~~------------~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~  126 (238)
                      +.+. +.|++++..  +..            .+...|.+.++..+|+|.|+|.+.+..  |..           ...+.+
T Consensus       239 p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~--g~~-----------~~~~~l  305 (524)
T 2ec8_A          239 SSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTF--GSA-----------NVTTTL  305 (524)
T ss_dssp             STTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSS--CEE-----------EEEEEE
T ss_pred             CCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecC--Cce-----------EEEEEE
Confidence            3555 999998876  221            123567788889999999998776632  211           112223


Q ss_pred             CCccCCEEEeCC---CceEEeCCCcEEEEEEEeeeCCCE-EEEEeCCEEeeccCCccEEEecCC---cEEEEEeecCCCC
Q psy18191        127 DGYRVPRITEHP---ASAVVPRHEPTTLNCKADGYPEPR-IEWYKDGSLVSAEIGSHRILLPAG---SLFFLSLVHGKKD  199 (238)
Q Consensus       127 ~v~~~P~i~~~~---~~~~~~~G~~~~L~C~~~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~~---~l~~~~vi~~v~~  199 (238)
                      .+..+|.+...+   ....+.+|+.+.|.|.+.|.|.|. +.|+++|..+.... .......++   .....+.|..+..
T Consensus       306 ~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~  384 (524)
T 2ec8_A          306 EVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKW-EDYPKSENESNIRYVSELHLTRLKG  384 (524)
T ss_dssp             EEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSB-CCEESCCSSSCCEEEEEEEECSCCG
T ss_pred             EEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCc-cceeEEccCCCceeEEEEEEeecCc
Confidence            355778876654   368899999999999999999999 99999998887532 122222222   1222334778899


Q ss_pred             CCCeEEEEEEEeCCCceeEEEEEEEEccCCC
Q psy18191        200 TDSGVYWCVARNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       200 ~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      +|+|.|+|.|.|..|... ..+.|.|..+|.
T Consensus       385 ~d~G~Y~C~a~N~~g~~~-~~~~l~V~~~P~  414 (524)
T 2ec8_A          385 TEGGTYTFLVSNSDVNAA-IAFNVYVNTKPE  414 (524)
T ss_dssp             GGCEEEEEEEECSSCEEE-EEEEEEECEEEE
T ss_pred             ccCeEEEEEEEecCceEE-EEEEEEEecCCe
Confidence            999999999999999986 599999976553

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.72  E-value=4.5e-16  Score=138.14  Aligned_cols=133  Identities=13%  Similarity=0.159  Sum_probs=90.4

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCcc-CCEEEeCCCceEEeCCCcEEEEEEEe----
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYR-VPRITEHPASAVVPRHEPTTLNCKAD----  156 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~-~P~i~~~~~~~~~~~G~~~~L~C~~~----  156 (238)
                      .|.+.++..+|+|.|+|.+ +.  .|.....           +.+.+.. +|.+. .+....+.+|+.+.|.|.+.    
T Consensus       407 ~L~I~~v~~~D~G~Y~C~a-n~--~g~~~~~-----------~~l~V~~~~p~~~-~~~~~~v~~G~~v~L~C~~~~~~~  471 (585)
T 2ocw_A          407 TVILNQLTSRDAGFYWCLT-NG--DTLWRTT-----------VEIKIIEGEPNLK-VPGNVTAVLGETLKVPCHFPCKFS  471 (585)
T ss_pred             EEEECCCChhhCEEEEEcc-cC--CCcccee-----------EEEEEecCccccc-cCCceeEecCCcEEEEEEecCCCC
Confidence            4778888889999999766 32  2221111           1111222 44444 36778899999999999986    


Q ss_pred             eeCCCEEEEEeCCEEeeccCCcc----EEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        157 GYPEPRIEWYKDGSLVSAEIGSH----RILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       157 g~P~p~i~W~~~g~~l~~~~~~~----~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      |.|.|.+.|+++|..+.......    ............+.|..+..+|+|.|+|.|.|..|...+..+.|.|..++
T Consensus       472 ~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p  548 (585)
T 2ocw_A          472 SYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK  548 (585)
T ss_pred             CCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence            77889999999998876432111    12222221112223677899999999999999999876546899998876

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.71  E-value=1.3e-16  Score=112.52  Aligned_cols=101  Identities=24%  Similarity=0.424  Sum_probs=80.6

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecC-C--cEEEEEeecCCCCCCCeE
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPA-G--SLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~-~--~l~~~~vi~~v~~~d~G~  204 (238)
                      ...+|.|+..|.++.+.+|+++.|.|.+.|.|.|.+.|++++..+........+...+ +  .|.+..+    ..+|+|.
T Consensus        12 ~~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v----~~~D~G~   87 (116)
T 2kkq_A           12 HKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDV----NKKDAGW   87 (116)
T ss_dssp             CCBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEE----CGGGCEE
T ss_pred             CCCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCC----CcccCEE
Confidence            3467888888999999999999999999999999999999999887532222222222 2  4555444    9999999


Q ss_pred             EEEEEEeCCCceeEEEEEEEEccCCCCCC
Q psy18191        205 YWCVARNELGFARSKNATLDVAGKISTAT  233 (238)
Q Consensus       205 Y~C~a~N~~G~~~s~~~~L~V~~~~~~~~  233 (238)
                      |+|.|.|..|... ..+.|.|..++.++.
T Consensus        88 Y~C~a~N~~G~~~-~~~~l~V~~~p~~~~  115 (116)
T 2kkq_A           88 YTVSAVNEAGVTT-CNTRLDVTARPNQTL  115 (116)
T ss_dssp             EEEEEEETTEEEE-EEEEEEEECCSCCCC
T ss_pred             EEEEEEcCCCeEE-EEEEEEEeCCCCCCC
Confidence            9999999999996 599999998876653

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.71  E-value=9.9e-17  Score=131.03  Aligned_cols=154  Identities=26%  Similarity=0.307  Sum_probs=101.1

Q ss_pred             CCCccEEEeccccccccce----------EEEEEcCCCCC-CCCCceEEEeCCCcccCCceEEeCCCCcceecceec--C
Q psy18191         61 YPKPICLRFQDLLPQSKQG----------LMYLVGSQASP-DYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHG--D  127 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g----------~~~l~~~~~~~-~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~--~  127 (238)
                      .|.+.+.|++++..+....          ...|.+.++.. .|+|.|+|.+.+..  |.    ..  ....+.....  .
T Consensus        33 ~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~--g~----~~--~~~~l~V~~~~~~  104 (304)
T 2yd9_A           33 DPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSV--GE----IT--VHAKLTVLREDQL  104 (304)
T ss_dssp             SSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSS--CE----EC--CEEEEEEECGGGC
T ss_pred             eCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEEECCC--Ce----EE--EEEEEEEeccccC
Confidence            4567899999987543321          14577788886 89999998877643  21    11  1111111000  0


Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCc-cEEEecCCcEEEEEeecCCCCCCCeEEE
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGS-HRILLPAGSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~-~~~~~~~~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      ....|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...... ......++.|.    |..+..+|+|.|+
T Consensus       105 p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~----i~~~~~~d~G~Y~  180 (304)
T 2yd9_A          105 PSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQ----IESSEETDQGKYE  180 (304)
T ss_dssp             CTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECTTSCEE----ECSCCGGGCEEEE
T ss_pred             CCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCCCeEEE----EccCCcccCEEEE
Confidence            112378888888889999999999999999999999999999988754222 23344566666    5566999999999


Q ss_pred             EEEEeCCCceeEEEEEEEEc
Q psy18191        207 CVARNELGFARSKNATLDVA  226 (238)
Q Consensus       207 C~a~N~~G~~~s~~~~L~V~  226 (238)
                      |.|.|..|...+..+.|.|.
T Consensus       181 C~a~n~~g~~~~~~~~l~v~  200 (304)
T 2yd9_A          181 CVATNSAGVRYSSPANLYVR  200 (304)
T ss_dssp             EEEEETTEEEECCCEEEEEE
T ss_pred             EEEEeCCCCEEeccEEEEEE
Confidence            99999999875433555553

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.71  E-value=8.7e-17  Score=123.96  Aligned_cols=131  Identities=16%  Similarity=0.153  Sum_probs=84.8

Q ss_pred             EEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCE
Q psy18191         83 LVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPR  162 (238)
Q Consensus        83 l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~  162 (238)
                      |.+.++...|+|.|+|...+... +....        ............|.+...+..  +.+|+.+.|.|.+.+.| |.
T Consensus        73 L~i~~v~~~D~G~Y~C~~~~~~~-~~~~~--------~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~  140 (208)
T 3r4d_A           73 LLFQMITMKDMGVYTLDMTDENY-RRTQA--------TVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-AN  140 (208)
T ss_dssp             EEECSCCGGGCEEEEEEEECSSC-EEEEE--------EEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CE
T ss_pred             EEEccccccCCeEEEEEEEcccC-ceeEE--------EEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-Cc
Confidence            55666667777777765554311 11000        001011112234677665444  88999999999999966 89


Q ss_pred             EEEEeCCEEeeccCCccEEEe-cCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCCCC
Q psy18191        163 IEWYKDGSLVSAEIGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST  231 (238)
Q Consensus       163 i~W~~~g~~l~~~~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~  231 (238)
                      +.|++++..+...  ...... .++.|.    |..+..+|+|.|+|.|.|.+|...+..++|.|..++-.
T Consensus       141 i~W~~~g~~l~~~--~~~~~~~~~~~L~----i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~~  204 (208)
T 3r4d_A          141 IQWLFNSQSLQLT--ERMTLSQNNSILR----IDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHH  204 (208)
T ss_dssp             EEEEETTEECCCC--SSEEEETTTTEEE----ESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-----
T ss_pred             eEEEECCEeCCCC--CCeEEcCCCCEEE----EeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCcc
Confidence            9999999988743  222222 235554    56669999999999999999999888999998776643

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.71  E-value=7.9e-17  Score=108.93  Aligned_cols=90  Identities=20%  Similarity=0.233  Sum_probs=72.0

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC--EEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG--SLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g--~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      +|.|...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++  ..+...   .......+...  +.|..+..+|+|.|+|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~---~~~~~~~~~~~--L~i~~~~~~D~G~Y~C~   76 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE---LLVDAKSSTTS--IFFPSAKRADSGNYKLK   76 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTT---SEEEEETTEEE--EECTTBCGGGCEEEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCc---EEEEecCCEEE--EEECCCChhcCEEEEEE
Confidence            688877778889999999999999999999999999999  777532   22222233222  23788899999999999


Q ss_pred             EEeCCCceeEEEEEEEEc
Q psy18191        209 ARNELGFARSKNATLDVA  226 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~  226 (238)
                      |.|..|... ..+.|.|+
T Consensus        77 a~N~~G~~~-~~~~l~V~   93 (93)
T 1wit_A           77 VKNELGEDE-AIFEVIVQ   93 (93)
T ss_dssp             EEETTEEEE-EEEEEEEC
T ss_pred             EEcCCCeEE-EEEEEEEC
Confidence            999999986 58888874

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.71  E-value=4.8e-17  Score=126.35  Aligned_cols=151  Identities=21%  Similarity=0.312  Sum_probs=99.9

Q ss_pred             CCCccEEEeccccccccc-----------eEEE--EEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecC
Q psy18191         61 YPKPICLRFQDLLPQSKQ-----------GLMY--LVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGD  127 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~-----------g~~~--l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~  127 (238)
                      .+.+.+.|++++..+...           +..+  +.+.++...|+|.|+|.+.+...      .... ....+..    
T Consensus        36 ~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g------~~~~-~~~~l~v----  104 (217)
T 2vr9_A           36 KPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVG------QAVS-RHASLQI----  104 (217)
T ss_dssp             SSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETTE------EEEC-CCEEEEE----
T ss_pred             CCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEEEecCCC------cccc-ccceEEE----
Confidence            356789999988754331           1111  24567788899999987665322      1100 0111110    


Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEE-eeeCCCEEEEEeCCEEeeccC------CccEEEecCCcEEEEEeecCCCCC
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEI------GSHRILLPAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~------~~~~~~~~~~~l~~~~vi~~v~~~  200 (238)
                      ...+|.+...+....+.+|+.+.|.|.+ .|.|.|.+.|++++..+....      ........++.|.    |..+..+
T Consensus       105 ~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~----i~~~~~~  180 (217)
T 2vr9_A          105 AVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLL----ISNVEPI  180 (217)
T ss_dssp             CEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEETTTEEE----ESSCCST
T ss_pred             EEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEecCCCcEE----EeeCCHH
Confidence            1124555556677889999999999998 899999999999999887321      2222333455555    5667999


Q ss_pred             CCeEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191        201 DSGVYWCVARNELGFARSKNATLDVAG  227 (238)
Q Consensus       201 d~G~Y~C~a~N~~G~~~s~~~~L~V~~  227 (238)
                      |+|.|+|.|.|..|...+ ...+.+..
T Consensus       181 d~G~Y~C~a~N~~G~~~~-~~~~lv~~  206 (217)
T 2vr9_A          181 DEGNYKCIAQNLVGTRES-SYAKLIVQ  206 (217)
T ss_dssp             TCEEEEEEEEETTEEEEC-CCEEEEEC
T ss_pred             HCeEEEEEEEcccceecc-ccEEEEEE
Confidence            999999999999999975 54444433

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.71  E-value=2.9e-16  Score=127.08  Aligned_cols=151  Identities=19%  Similarity=0.144  Sum_probs=108.3

Q ss_pred             CccEEEec-cccccccc-----------eEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCcc
Q psy18191         63 KPICLRFQ-DLLPQSKQ-----------GLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYR  130 (238)
Q Consensus        63 ~~~~~w~~-~~~~~~~~-----------g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~  130 (238)
                      .+.+.|++ ++..+...           +...|.+.++..+|+|.|+|.+.+..  |..          ....+.+.+..
T Consensus        32 ~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~--g~~----------~~~~~~l~v~~   99 (291)
T 1qz1_A           32 DKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAED--GTQ----------SEATVNVKIFQ   99 (291)
T ss_dssp             CCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTT--SCE----------EEEEEEEEEEC
T ss_pred             CcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCC--CCe----------eEEEEEEEeec
Confidence            67899999 66644321           12467888899999999998776642  110          11112222456


Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+............++.|.    |..+..+|+|.|+|.|.
T Consensus       100 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~----i~~~~~~d~G~Y~C~a~  175 (291)
T 1qz1_A          100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ----IRGIKKTDEGTYRCEGR  175 (291)
T ss_dssp             CSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEE----ETTCCGGGCEEEEEEEE
T ss_pred             cccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEE----EccCccccCeEEEEEEE
Confidence            78888888888999999999999999999999999999988765433444445566665    66679999999999999


Q ss_pred             eCC-CceeEEEEEEEEccCC
Q psy18191        211 NEL-GFARSKNATLDVAGKI  229 (238)
Q Consensus       211 N~~-G~~~s~~~~L~V~~~~  229 (238)
                      |.. |...+..+.|.|..+|
T Consensus       176 n~~~~~~~~~~~~l~v~~~p  195 (291)
T 1qz1_A          176 ILARGEINFKDIQVIVNVPP  195 (291)
T ss_dssp             EGGGTEEEEEEEEEEEEEEE
T ss_pred             ecCCCceeeEEEEEEEecCC
Confidence            987 4433346667665443

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.71  E-value=1.4e-16  Score=130.50  Aligned_cols=161  Identities=13%  Similarity=0.100  Sum_probs=107.3

Q ss_pred             CCCccEEEeccccccccce------EEEEEcCCCCCCCCCceEEEeC-CCcccCCceEEeCCCCcceecceecCCccCCE
Q psy18191         61 YPKPICLRFQDLLPQSKQG------LMYLVGSQASPDYPNRFSLCNN-KTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPR  133 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g------~~~l~~~~~~~~~~g~y~~~~~-~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~  133 (238)
                      .|.+.+.|++++.++....      ...|.+.++..+|+|.|+|.+. +.  .|......   ....+..+......+|.
T Consensus       136 ~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~--~g~~~~~~---~~~~~~~~~~~~~~~P~  210 (315)
T 1itb_B          136 NELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTY--LGKQYPIT---RVIEFITLEENKPTRPV  210 (315)
T ss_dssp             TCCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEE--TTEEEEEE---EEEEEEEECCCCCCCCE
T ss_pred             CCCCEEEEEECCEECCCccceEeecCceEEEEeceehhCcEEEEEEEcCC--CCcEEEEE---EEEEEEEecCCCCCCCE
Confidence            4567899999988653321      1257778899999999998776 32  22211100   00111111111246788


Q ss_pred             EEeCCCc-eEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCC---ccEEEecCC------cEEEEEeecCCCCCC-C
Q psy18191        134 ITEHPAS-AVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---SHRILLPAG------SLFFLSLVHGKKDTD-S  202 (238)
Q Consensus       134 i~~~~~~-~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~---~~~~~~~~~------~l~~~~vi~~v~~~d-~  202 (238)
                      +...+.. ..+.+|+.+.|.|.+.|.|.|.+.|+++|..+.....   ..+.....+      .....+.|..+..+| +
T Consensus       211 ~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~  290 (315)
T 1itb_B          211 IVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYK  290 (315)
T ss_dssp             ECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGT
T ss_pred             EecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcC
Confidence            8766553 5789999999999999999999999999998876421   112222221      111223377889999 9


Q ss_pred             eEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191        203 GVYWCVARNELGFARSKNATLDVAG  227 (238)
Q Consensus       203 G~Y~C~a~N~~G~~~s~~~~L~V~~  227 (238)
                      |.|+|.|.|..|... ..+.|.|..
T Consensus       291 G~Y~C~a~N~~G~~~-~~~~l~v~~  314 (315)
T 1itb_B          291 HPFTCFAKNTHGIDA-AYIQLIYPV  314 (315)
T ss_dssp             SCEEEEEECTTCCEE-EEEEEECCC
T ss_pred             CceEEEEecCCCcee-EEEEEEecC
Confidence            999999999999997 599998753

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=2.7e-17  Score=114.60  Aligned_cols=103  Identities=24%  Similarity=0.434  Sum_probs=82.9

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      ..+|.|...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+............++...+  .|..+..+|+|.|+|.
T Consensus         7 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L--~i~~v~~~D~G~Y~C~   84 (110)
T 2dm3_A            7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL--IIEPVTSRDAGIYTCI   84 (110)
T ss_dssp             CCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEE--EESSCCGGGCSBBCEE
T ss_pred             CCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEE--EEeeCCcccCEEEEEE
Confidence            46899999899999999999999999999999999999999887753222222223332222  2677899999999999


Q ss_pred             EEeCCCceeEEEEEEEEccCCCCCCC
Q psy18191        209 ARNELGFARSKNATLDVAGKISTATD  234 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~~~~~~~~  234 (238)
                      |.|..|... ..+.|.|..++++|..
T Consensus        85 a~n~~g~~~-~~~~l~V~~~p~~P~~  109 (110)
T 2dm3_A           85 ATNRAGQNS-FSLELVVAAKESGPSS  109 (110)
T ss_dssp             EECSSCEEE-ECCEEEEECCCCSSSC
T ss_pred             EECCCCEEE-EEEEEEEeCCCCCCCC
Confidence            999999986 6999999999888764

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.70  E-value=4.2e-16  Score=126.00  Aligned_cols=154  Identities=13%  Similarity=0.079  Sum_probs=98.4

Q ss_pred             EEEec-cccccccce-E-----EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCC
Q psy18191         66 CLRFQ-DLLPQSKQG-L-----MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHP  138 (238)
Q Consensus        66 ~~w~~-~~~~~~~~g-~-----~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~  138 (238)
                      +.|++ ++..+.... +     ..|.+.++...|+|.|+|.+.+. ..|    ..  .....+. +......+|.+...+
T Consensus       122 v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~-~~~----~~--~~~~~l~-V~~~~~~~p~i~~~~  193 (289)
T 3ejj_X          122 VSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVN-GRE----ST--STGIWLK-VNRVHPEPPQIKLEP  193 (289)
T ss_dssp             EEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEEET-TEE----EE--CCCEEEE-EESSCCCCCEEEEES
T ss_pred             EEEEecCCeecCCCccEEECCCCCEEEeecccccCEEEEEEEEeC-CCc----cc--cccEEEE-EEECCCCCCeEEecC
Confidence            88976 444433221 1     13567778888888888776521 111    11  1111111 111123688888888


Q ss_pred             CceEEeCCCcEEEEEEEee-eCCCEEEEEeCCEEeeccCCccEEEecCCc--EEEEEeecCCCCCCCeEEEEEEEeCCCc
Q psy18191        139 ASAVVPRHEPTTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRILLPAGS--LFFLSLVHGKKDTDSGVYWCVARNELGF  215 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~--l~~~~vi~~v~~~d~G~Y~C~a~N~~G~  215 (238)
                      ....+.+|+.+.|.|.+.| .|.|.+.|++++..+...   .........  ....+.|..+..+|+|.|+|.|.|..|.
T Consensus       194 ~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  270 (289)
T 3ejj_X          194 SKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIP---LNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGT  270 (289)
T ss_dssp             SSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCC---EEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCE
T ss_pred             CceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeecc---CCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCC
Confidence            8888889999999999998 799999999999887642   111111111  1122236778999999999999999999


Q ss_pred             eeEEEEEEEEccCCCC
Q psy18191        216 ARSKNATLDVAGKIST  231 (238)
Q Consensus       216 ~~s~~~~L~V~~~~~~  231 (238)
                      .. .++.|.+...+..
T Consensus       271 ~~-~s~~L~~~~~~~~  285 (289)
T 3ejj_X          271 RT-ATMNFQVVESHHH  285 (289)
T ss_dssp             EE-EEEEEECC-----
T ss_pred             cc-ccEEEEEEecccc
Confidence            97 4999998776543

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.70  E-value=1.5e-16  Score=122.00  Aligned_cols=152  Identities=13%  Similarity=0.124  Sum_probs=98.4

Q ss_pred             CCccEEEecccccccc--------ceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCE
Q psy18191         62 PKPICLRFQDLLPQSK--------QGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPR  133 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~--------~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~  133 (238)
                      +.+.+.|+|++.....        .....|.+.++..+|+|.|+|.+.+...      .........+.  ......+|.
T Consensus        31 ~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g------~~~~s~~~~l~--V~~~~~~p~  102 (196)
T 3p2t_A           31 EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVG------WSQPSDPLELV--MTGAYSKPT  102 (196)
T ss_dssp             TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTE------EBCCCCCEEEE--EECSSCCCE
T ss_pred             CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCc------ccCCCccEEEE--ecCCCCCCE
Confidence            3468999999875432        1235678889999999999987765322      11111111111  111234677


Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEE--EecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI--LLPAGSLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~--~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      +...+.. .+.+|+.++|.|.+.+. .+.+.|+|+|..+.........  ....+.|.    |..++.+|+|.|+|.|.|
T Consensus       103 ~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~----i~~v~~~d~G~Y~C~a~n  176 (196)
T 3p2t_A          103 LSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHGAQQHQAEFP----MSPVTSVHGGTYRCFSSH  176 (196)
T ss_dssp             EEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEEEEEEEEEEE----ECSCCGGGCEEEEEEEEC
T ss_pred             EEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeecccccccCcceEEE----eCCCcccCCCeEEEEEEc
Confidence            7765554 67899999999999884 4689999999876542111111  11223333    677799999999999999


Q ss_pred             CCC----ceeEEEEEEEEcc
Q psy18191        212 ELG----FARSKNATLDVAG  227 (238)
Q Consensus       212 ~~G----~~~s~~~~L~V~~  227 (238)
                      ..+    +..+..+.|.|.+
T Consensus       177 ~~~~~~~s~~S~~~~l~V~G  196 (196)
T 3p2t_A          177 GFSHYLLSHPSDPLELIVSG  196 (196)
T ss_dssp             GGGTTEECCCCCCEEEEEC-
T ss_pred             CCCCcccCCCCCCEEEEeCC
Confidence            987    4445577887753

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.70  E-value=9.7e-17  Score=131.05  Aligned_cols=155  Identities=15%  Similarity=0.151  Sum_probs=101.0

Q ss_pred             CCCccEEEeccccccccc-----------eEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCC-cceeccee---
Q psy18191         61 YPKPICLRFQDLLPQSKQ-----------GLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPS-LPLFPGVH---  125 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~-----------g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~-~~~~~~~~---  125 (238)
                      .|.+.+.|++++.++...           +...|.+.++...|+|.|+|.+.+...    ........ ......+.   
T Consensus       135 ~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~~~~~~~~~~~~~  210 (312)
T 2y23_A          135 SGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKA----TNHSTVVLVGDVFKKLQKEA  210 (312)
T ss_dssp             CSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSC----EEEEEEEECTHHHHHHHHHH
T ss_pred             CCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCc----eEEEEEEEcchhhhhhcccc
Confidence            467889999998754332           233488889999999999986643211    11110000 00000000   


Q ss_pred             ------cCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC-EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCC
Q psy18191        126 ------GDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKK  198 (238)
Q Consensus       126 ------~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~  198 (238)
                            .....+|.+.... ...+.+|+.+.|.|.+.|.|.| .+.|+++|..+... .....  .++...  +.|..+.
T Consensus       211 ~~~~~~~~~~~~p~~~~~~-~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~-~~~~~--~~~~~~--L~I~~v~  284 (312)
T 2y23_A          211 EFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD-EKHDF--KDGICT--LLITEFS  284 (312)
T ss_dssp             HHHHHHHHHHHSSEEEEEE-EEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEE-CCC------CEEE--EEECSCS
T ss_pred             cccccchhhccCCceeecc-eEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCC-CcEEE--ECCEEE--EEECcCC
Confidence                  0012357766443 3778999999999999999998 99999999998753 12222  233222  2367789


Q ss_pred             CCCCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191        199 DTDSGVYWCVARNELGFARSKNATLDVA  226 (238)
Q Consensus       199 ~~d~G~Y~C~a~N~~G~~~s~~~~L~V~  226 (238)
                      .+|+|.|+|.|.|..|... ..+.|.|+
T Consensus       285 ~~d~G~Y~C~a~N~~G~~~-~~~~l~i~  311 (312)
T 2y23_A          285 KKDAGIYEVILKDDRGKDK-SRLKLVDE  311 (312)
T ss_dssp             GGGCEEEEEEEESTTCCEE-EEEEECSC
T ss_pred             HHHCEEEEEEEEcCCCcee-eeeEEEec
Confidence            9999999999999999997 48888764

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.70  E-value=4.7e-16  Score=106.04  Aligned_cols=96  Identities=25%  Similarity=0.461  Sum_probs=76.8

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      +..+|.|...+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+... ....+...++...+  .|..+..+|+|.|+|
T Consensus         3 ~~~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~~~~~~~~~L--~i~~~~~~d~G~Y~C   79 (99)
T 3puc_A            3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQG-GKYKLSEDKGGFFL--EIHKTDTSDSGLYTC   79 (99)
T ss_dssp             CCEEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSS-SSEEEEEETTEEEE--EECSCCGGGCEEEEE
T ss_pred             CCCCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCC-CCEEEEEeCCEEEE--EECCCCcccCEEEEE
Confidence            346889998889999999999999999999999999999999988753 22223222332222  367779999999999


Q ss_pred             EEEeCCCceeEEEEEEEEcc
Q psy18191        208 VARNELGFARSKNATLDVAG  227 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~~  227 (238)
                      .|.|..|... ..+.|.|.+
T Consensus        80 ~a~n~~g~~~-~~~~l~V~~   98 (99)
T 3puc_A           80 TVKNSAGSVS-SSCKLTIKA   98 (99)
T ss_dssp             EEEETTEEEE-EEEEEEEEC
T ss_pred             EEEeCCCcEe-EEEEEEEEe
Confidence            9999999996 599998864

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.70  E-value=2.9e-16  Score=118.31  Aligned_cols=136  Identities=12%  Similarity=0.087  Sum_probs=97.3

Q ss_pred             cEEEeccccccccceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEe
Q psy18191         65 ICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVP  144 (238)
Q Consensus        65 ~~~w~~~~~~~~~~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~  144 (238)
                      .+.|++++..+... ...|.+.++..+|+|.|+|...+...          .....+.     +..+|.+... ....+.
T Consensus        39 ~~~W~~~~~~~~~~-~~~L~i~~~~~~d~G~Y~C~~~n~~~----------s~~~~l~-----V~~~~~~~~~-~~~~~~  101 (175)
T 1fnl_A           39 STQWFHNESLISSQ-ASSYFIDAATVNDSGEYRCQTNLSTL----------SDPVQLE-----VHIGWLLLQA-PRWVFK  101 (175)
T ss_dssp             CCEEEETTEEEESS-CSEEEESSCCGGGCEEEEEECSSSCC----------CCCEEEE-----EECSSEEEEC-SCSEEE
T ss_pred             ceEEEECCEEccCC-ceEEEEeCCCcccCEEEEEEeeCCcc----------cccEEEE-----EeCCCceeeC-CCceec
Confidence            47899998755432 33577888999999999987765211          1111111     2334554444 346788


Q ss_pred             CCCcEEEEEEEeeeCCC-EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEE
Q psy18191        145 RHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL  223 (238)
Q Consensus       145 ~G~~~~L~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L  223 (238)
                      +|+.+.|.|.+.+.|++ .+.|+++|..+..       ...++.|.    |..+..+|+|.|+|.|.|..|...+..+.|
T Consensus       102 ~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~-------~~~~~~L~----i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l  170 (175)
T 1fnl_A          102 EEDPIHLRCHSWKNTALHKVTYLQNGKDRKY-------FHHNSDFH----IPKATLKDSGSYFCRGLVGSKNVSSETVNI  170 (175)
T ss_dssp             TTCCEEEEEEECTTCCCEEEEEEETTEEEEE-------EEECCCEE----ESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred             CCCCEEEEEEcCCCCCceEEEEEECCeEccC-------CCCCCEEE----EcccChhhCeEEEEEEEcCCCCccCccEEE
Confidence            99999999999887664 9999999988753       12356665    566699999999999999887766678899


Q ss_pred             EEccC
Q psy18191        224 DVAGK  228 (238)
Q Consensus       224 ~V~~~  228 (238)
                      .|.++
T Consensus       171 ~V~~~  175 (175)
T 1fnl_A          171 TITQA  175 (175)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            98764

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.70  E-value=8.5e-19  Score=160.15  Aligned_cols=136  Identities=19%  Similarity=0.253  Sum_probs=0.0

Q ss_pred             EEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCE
Q psy18191         83 LVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPR  162 (238)
Q Consensus        83 l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~  162 (238)
                      |.+.++..+|+|.|+|.+.+... |...+.        ...+...+..+|.|...+.+..+.+|+.+.|.|.+.|.|.|.
T Consensus       627 L~i~~~~~~d~G~Y~C~a~n~~~-~~~~s~--------~~~l~v~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~  697 (772)
T 3v2a_R          627 MELKNASLQDQGDYVCLAQDRKT-KKRHCV--------VRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQ  697 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEECCCCccCCcEEEEEEEeCCC-CeEEEE--------EEeecccccCCCEeecCCCceEEeCCCCEEEEEEeCccCCCe
Confidence            66777788888888876665321 111100        001111135788888877788899999999999999999999


Q ss_pred             EEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCCCCCC
Q psy18191        163 IEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTAT  233 (238)
Q Consensus       163 i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~~~  233 (238)
                      +.|+++|..+... ........++.|.    |..+..+|+|.|+|.|.|.+|...+ .+.|.|.++++...
T Consensus       698 v~W~k~g~~l~~~-~~~~~~~~~~~L~----I~~v~~~D~G~Y~C~a~N~~G~~~~-~~~l~V~~~p~~~~  762 (772)
T 3v2a_R          698 IMWFKDNETLVED-SGIVLKDGNRNLT----IRRVRKEDEGLYTCQACSVLGCAKV-EAFFIIEGAQEKTN  762 (772)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             EEEEECCeECcCC-CCeEEcCCCcEEE----ECcCCHHHCEEEEEEEEeCCcceeE-EEEEEEECCCCccc
Confidence            9999999988753 1111222245555    4555999999999999999999974 99999999887654

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.70  E-value=4.1e-17  Score=125.87  Aligned_cols=151  Identities=21%  Similarity=0.265  Sum_probs=99.7

Q ss_pred             CCccEEEeccccccc------------c-ceE----EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecce
Q psy18191         62 PKPICLRFQDLLPQS------------K-QGL----MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGV  124 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~------------~-~g~----~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~  124 (238)
                      +.+.+.|++++..+.            . ..+    ..|.+.++...|+|.|+|.+.+..  |...         ....+
T Consensus        29 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~--g~~~---------~~~~~   97 (212)
T 1f97_A           29 SSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEG--GQNY---------GEVSI   97 (212)
T ss_dssp             SSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEETT--SSSE---------EEEEE
T ss_pred             CCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEEEEEEccC--CCcc---------cEEEE
Confidence            567899999876421            0 111    356777888888888887665531  1100         11112


Q ss_pred             ecCCccCCEEEeCCCceEEeCCCcEEEEEE-EeeeCCCEEEEEeCCE-EeeccCCc------cEEE--ecCCcEEEEEee
Q psy18191        125 HGDGYRVPRITEHPASAVVPRHEPTTLNCK-ADGYPEPRIEWYKDGS-LVSAEIGS------HRIL--LPAGSLFFLSLV  194 (238)
Q Consensus       125 ~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~-~~g~P~p~i~W~~~g~-~l~~~~~~------~~~~--~~~~~l~~~~vi  194 (238)
                      .+.+..+|.+...+....+.+|+.+.|.|. +.|.|.|.+.|++++. .+......      ....  ...+.|.    |
T Consensus        98 ~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~----i  173 (212)
T 1f97_A           98 HLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLI----F  173 (212)
T ss_dssp             EEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEE----E
T ss_pred             EEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecCCCceEE----E
Confidence            222445665544445567899999999999 7999999999999998 77643110      1111  2345555    5


Q ss_pred             cCCCCCCCeEEEEEEEeCCCce-eEEEEEEEEcc
Q psy18191        195 HGKKDTDSGVYWCVARNELGFA-RSKNATLDVAG  227 (238)
Q Consensus       195 ~~v~~~d~G~Y~C~a~N~~G~~-~s~~~~L~V~~  227 (238)
                      ..+..+|+|.|+|.|.|..|.. .+..+.|.|.+
T Consensus       174 ~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          174 DPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             SSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             EecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence            6669999999999999999998 44577888865

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=8.5e-17  Score=112.16  Aligned_cols=103  Identities=23%  Similarity=0.309  Sum_probs=82.4

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEec-CCcEEEEEeecCCCCCCCeEEEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLP-AGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~-~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      ..+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+........+... ++...  +.|..+..+|+|.|+|
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~--L~i~~v~~~D~G~Y~C   83 (110)
T 2dm2_A            6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS--LHTTASTLDDDGNYTI   83 (110)
T ss_dssp             SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEE--EEESSCCTTTCSCCEE
T ss_pred             CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEE--EEECCCChhhCEEEEE
Confidence            46788888888899999999999999999999999999999888753222333322 34322  2377889999999999


Q ss_pred             EEEeCCCceeEEEEEEEEccCCCCCCC
Q psy18191        208 VARNELGFARSKNATLDVAGKISTATD  234 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~~~~~~~~~  234 (238)
                      .|.|..|... ..+.|.|..++..|..
T Consensus        84 ~a~N~~g~~~-~~~~l~V~~~~~~P~~  109 (110)
T 2dm2_A           84 MAANPQGRIS-CTGRLMVQAVNSGPSS  109 (110)
T ss_dssp             EEECTTCCEE-ECCCEEEECCSCCSSC
T ss_pred             EEEECCCeEE-EEEEEEEECCCCCCCC
Confidence            9999999996 5999999998877753

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=5.3e-16  Score=109.56  Aligned_cols=98  Identities=19%  Similarity=0.217  Sum_probs=77.3

Q ss_pred             CccCCEEEeC---CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeE
Q psy18191        128 GYRVPRITEH---PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       128 v~~~P~i~~~---~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~  204 (238)
                      +..+|.|...   +..+.+.+|+.+.|.|.+.|.|.|.+.|+++|..+..  ....+...++...+  .|..+..+|+|.
T Consensus        18 v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~--~~~~~~~~~~~~~L--~i~~~~~~D~G~   93 (118)
T 2e7c_A           18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT--SRVHVRTSDFDTVF--FVRQAARSDSGE   93 (118)
T ss_dssp             CSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCC--SSCEEEECSSEEEE--EESSCCTTTCEE
T ss_pred             eccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCC--CcEEEEECCCeEEE--EECCCChhcCEE
Confidence            5568888653   4678899999999999999999999999999998862  23333333333222  277889999999


Q ss_pred             EEEEEEeCCCceeEEEEEEEEccCCC
Q psy18191        205 YWCVARNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       205 Y~C~a~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      |+|.|.|..|... ..+.|.|..+|+
T Consensus        94 Y~C~a~N~~G~~~-~~~~l~V~~~P~  118 (118)
T 2e7c_A           94 YELSVQIENMKDT-ATIRIRVVEKAG  118 (118)
T ss_dssp             EEEEEECSSCEEC-CEEEEEEECCCC
T ss_pred             EEEEEEeCCCeEE-EEEEEEEEcCCC
Confidence            9999999999986 599999987764

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.69  E-value=1.6e-16  Score=121.92  Aligned_cols=139  Identities=16%  Similarity=0.096  Sum_probs=78.5

Q ss_pred             cEEEecccccccc--------ceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEe
Q psy18191         65 ICLRFQDLLPQSK--------QGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITE  136 (238)
Q Consensus        65 ~~~w~~~~~~~~~--------~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~  136 (238)
                      .+.|+|++..+..        .....|.+.++..+|+|.|+|.+.+..  |    .........+.  ......+|.+..
T Consensus        34 ~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~--g----~~~~s~~~~l~--V~~~~~~p~i~~  105 (196)
T 2d3v_A           34 EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPA--G----WSEPSDPLELV--VTGFYNKPTLSA  105 (196)
T ss_dssp             EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETT--E----ECBCCCCEEEE--EECSSCCCEEEC
T ss_pred             EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCC--C----cCCcCccEEEE--ecCCCCCCeEEc
Confidence            7999999875421        123567888999999999998775431  1    11111111111  111123677765


Q ss_pred             CCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        137 HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      .+ ...+.+|+++.|.|.+.+.| |.+.|+|+|..+....... .....+...-...|..++.+|+|.|+|.|.|..+
T Consensus       106 ~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          106 LP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDS-QLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             ------------CEEEEEESSCC-SEEEEEEC---CCEEEEEC-EECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             cC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCccccccccc-ccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence            54 35788999999999999998 9999999998774310010 1122221112223677899999999999999875

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.69  E-value=4.8e-17  Score=134.44  Aligned_cols=158  Identities=21%  Similarity=0.273  Sum_probs=104.6

Q ss_pred             CCCccEEEeccccccccce----------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCcc
Q psy18191         61 YPKPICLRFQDLLPQSKQG----------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYR  130 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g----------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~  130 (238)
                      .|.+.+.|++++..+....          ...|.+.++...|+|.|+|.+.+..  |.....      ..+. +......
T Consensus       150 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~--g~~~~~------~~l~-V~~~~~~  220 (334)
T 1ry7_B          150 NPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKF--GSIRQT------YTLD-VLERSPH  220 (334)
T ss_dssp             SSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETT--EEEEEE------EEEE-EECCCCS
T ss_pred             CCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCC--CCEEEE------EEEE-EecCCCC
Confidence            3567899999887543321          1257778888888999988776642  211111      1111 1111122


Q ss_pred             CCEEEe-CCCceEEeCCCcEEEEEEEeeeCCCEEEEEe----CCEEeeccCCccEEEecC----------CcEEEEEeec
Q psy18191        131 VPRITE-HPASAVVPRHEPTTLNCKADGYPEPRIEWYK----DGSLVSAEIGSHRILLPA----------GSLFFLSLVH  195 (238)
Q Consensus       131 ~P~i~~-~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~----~g~~l~~~~~~~~~~~~~----------~~l~~~~vi~  195 (238)
                      +|.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|++    +|..+..+..........          ..|.    |.
T Consensus       221 ~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~----i~  296 (334)
T 1ry7_B          221 RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLS----LH  296 (334)
T ss_dssp             SCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEE----EC
T ss_pred             CCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEE----Ec
Confidence            454443 2567888999999999999999999999999    676665431111111111          1444    56


Q ss_pred             CCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCCCCC
Q psy18191        196 GKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~~  232 (238)
                      .+..+|+|.|+|.|.|..|... ..+.|.|...+.+.
T Consensus       297 ~v~~~d~G~Y~C~a~N~~G~~~-~~~~l~V~~~~~~~  332 (334)
T 1ry7_B          297 NVTFEDAGEYTCLAGNSIGFSH-HSAWLVVLPAEEEL  332 (334)
T ss_dssp             SCCTTSCSEEEEEEEESSCCEE-EEEEEEEECSCCC-
T ss_pred             cCCHHHCEEEEEEEeCCCCeEE-EEEEEEEEECCCCc
Confidence            6799999999999999999997 59999998877653

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.68  E-value=4.8e-17  Score=112.87  Aligned_cols=99  Identities=24%  Similarity=0.417  Sum_probs=67.2

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      +..+|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... ........++.|.    |..+..+|+|.|+|
T Consensus         7 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~L~----i~~v~~~D~G~Y~C   81 (108)
T 3kvq_A            7 ERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED-SGIVLKDGNRNLT----IRRVRKEDEGLYTC   81 (108)
T ss_dssp             ----CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCB-TTEEEETTTTEEE----ECSCCGGGCEEEEE
T ss_pred             ccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccC-CCeEEeCCCcEEE----EeecCcccCEEEEE
Confidence            457888888888999999999999999999999999999999887643 2222333345555    56669999999999


Q ss_pred             EEEeCCCceeEEEEEEEEccCCCCC
Q psy18191        208 VARNELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~~~~~~~  232 (238)
                      .|.|..|... ..+.|.|.+++..+
T Consensus        82 ~a~n~~g~~~-~~~~l~V~~~~~~~  105 (108)
T 3kvq_A           82 QACSVLGCAK-VEAFFIIEGAQEKT  105 (108)
T ss_dssp             EEC----CEE-EEEEEEEEC-----
T ss_pred             EEEeCCCceE-EEEEEEEeCCCccc
Confidence            9999999997 59999999887654

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.68  E-value=1.5e-15  Score=136.35  Aligned_cols=137  Identities=12%  Similarity=0.111  Sum_probs=98.3

Q ss_pred             CCccEEEeccccccccce-------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceec-ceecCCcc-CC
Q psy18191         62 PKPICLRFQDLLPQSKQG-------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFP-GVHGDGYR-VP  132 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~g-------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~-~~~~~v~~-~P  132 (238)
                      +.+.+.|++++..+....       ...|.+.++...|+|.|+|.+.+...  .           ..+ .+.+.+.. |+
T Consensus       494 ~~~~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g--~-----------~~s~~~~l~V~~~p~  560 (642)
T 1e07_A          494 QNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVS--A-----------NRSDPVTLDVLYGPD  560 (642)
T ss_pred             CCcEEEEEECCEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCC--C-----------ccCCCEEEEEEeCCC
Confidence            467899999887654322       12466677777888888877665322  1           000 11112333 44


Q ss_pred             EEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       133 ~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      .+...+.+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+..          ++.|.    |..+..+|+|.|+|.|.|.
T Consensus       561 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~----------~~~L~----i~~~~~~d~G~Y~C~a~N~  626 (642)
T 1e07_A          561 TPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQH----------TQVLF----IAKITPNNNGTYACFVSNL  626 (642)
T ss_pred             cceecCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECcc----------CceEE----ECcccccCCeEEEEEEEec
Confidence            455667788899999999999999999999999999988753          23444    4556999999999999999


Q ss_pred             CCceeEEEEEEEEc
Q psy18191        213 LGFARSKNATLDVA  226 (238)
Q Consensus       213 ~G~~~s~~~~L~V~  226 (238)
                      +|... .++.|.|.
T Consensus       627 ~G~~~-~s~~l~V~  639 (642)
T 1e07_A          627 ATGRN-NSIVKSIT  639 (642)
T ss_pred             ccCcc-eeEEEEEE
Confidence            99996 48888775

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.68  E-value=4.1e-16  Score=143.62  Aligned_cols=146  Identities=22%  Similarity=0.255  Sum_probs=104.8

Q ss_pred             CccEEEeccccccccc----------eEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCC
Q psy18191         63 KPICLRFQDLLPQSKQ----------GLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVP  132 (238)
Q Consensus        63 ~~~~~w~~~~~~~~~~----------g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P  132 (238)
                      .+.+.|++++.++...          ....|.+..+...|+|.|+|.+.|..  |.           ....+.+.+..+|
T Consensus       649 ~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~--g~-----------~~~~~~l~V~~~P  715 (816)
T 3dmk_A          649 PLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLA--GH-----------QQFTTPLNVYVPP  715 (816)
T ss_dssp             CCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSS--CE-----------EEEEEEECEEEEE
T ss_pred             CCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCC--cc-----------EEEEEEEEEEeCC
Confidence            3479999998765321          12457777888888888888776642  21           1122233356789


Q ss_pred             EEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeecc----CCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE----IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       133 ~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~----~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      .+...+.+..+.+|+++.|.|.+.|.|.|.++|++++..+...    .........++.|.    |..+..+|+|.|+|.
T Consensus       716 ~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~L~----i~~v~~~d~G~Y~C~  791 (816)
T 3dmk_A          716 RWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLH----VDNIQKTNEGYYLCE  791 (816)
T ss_dssp             EEEECCCCEEEETTCCEEEECEEEEESCCEEECCEECSSSTTCCBCCCCBTTEEEETTEEE----ECSCCGGGCEEEEEE
T ss_pred             ceeeecccceecCCCcEEEEEEEecCCCCeEEEEecCCCCCccccccccCCCEEecCCEEE----ECcCChhhCeEEEEE
Confidence            9998888899999999999999999999999999987543211    01112233456665    566699999999999


Q ss_pred             EEeCCCceeEEEEEEEEc
Q psy18191        209 ARNELGFARSKNATLDVA  226 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~  226 (238)
                      |.|.+|...+ .+.+..+
T Consensus       792 a~N~~G~~~~-~v~~~~~  808 (816)
T 3dmk_A          792 AINGIGSGLS-AVIMISV  808 (816)
T ss_dssp             EECSSSSCEE-EEEEEEE
T ss_pred             EEeCCCCCcE-EEEEEEe
Confidence            9999999986 6555543

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.68  E-value=2.8e-17  Score=126.47  Aligned_cols=150  Identities=17%  Similarity=0.205  Sum_probs=100.6

Q ss_pred             CCccEEEeccccccc-------------cceE----EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecce
Q psy18191         62 PKPICLRFQDLLPQS-------------KQGL----MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGV  124 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~-------------~~g~----~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~  124 (238)
                      +.+.+.|++++..+.             ...+    ..|.+.++...|+|.|+|.+.+..  |.         ......+
T Consensus        32 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--g~---------~~~~~~~  100 (209)
T 1nbq_A           32 SSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEG--GN---------SYGEVKV  100 (209)
T ss_dssp             SSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETT--SS---------CEECCEE
T ss_pred             CCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEEEEEEecCC--CC---------ccceEEE
Confidence            567899999875421             0011    357788888999999997765531  10         0011122


Q ss_pred             ecCCccCCEEEeCCCceEEeCCCcEEEEEEE-eeeCCCEEEEEeCCEEeeccCCc------cEEE--ecCCcEEEEEeec
Q psy18191        125 HGDGYRVPRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGS------HRIL--LPAGSLFFLSLVH  195 (238)
Q Consensus       125 ~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~------~~~~--~~~~~l~~~~vi~  195 (238)
                      .+.+..+|.+...+....+..|+.+.|.|.+ .|.|.|.+.|++++..+......      ....  ...+.|.    |.
T Consensus       101 ~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~----i~  176 (209)
T 1nbq_A          101 KLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELV----FD  176 (209)
T ss_dssp             ECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEE----ES
T ss_pred             EEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEE----EE
Confidence            2334566766555556778999999999997 89999999999999887653111      1111  1344555    56


Q ss_pred             CCCCCCCeEEEEEEEeCCCce-eEEEEEEEEc
Q psy18191        196 GKKDTDSGVYWCVARNELGFA-RSKNATLDVA  226 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~N~~G~~-~s~~~~L~V~  226 (238)
                      .+..+|+|.|+|.|.|..|.. .+..+.|.|.
T Consensus       177 ~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~  208 (209)
T 1nbq_A          177 PLSASDTGEYSCEARNGYGTPMTSNAVRMEAV  208 (209)
T ss_dssp             SCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred             eccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence            669999999999999999998 3345566653

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.68  E-value=3.1e-16  Score=110.50  Aligned_cols=102  Identities=54%  Similarity=0.891  Sum_probs=80.2

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCC---ccEEEecCCcEEEEEe-ecCCCCCCCe
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---SHRILLPAGSLFFLSL-VHGKKDTDSG  203 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~---~~~~~~~~~~l~~~~v-i~~v~~~d~G  203 (238)
                      +..+|.|...|....+.+|+.+.|.|.+.|.|.|.+.|++++..+.....   .......++.+.++.+ +..++.+|+|
T Consensus         6 ~~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G   85 (117)
T 2v9t_A            6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG   85 (117)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCE
T ss_pred             ccCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCE
Confidence            45789999988899999999999999999999999999999998875321   2344555666654332 2356789999


Q ss_pred             EEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        204 VYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       204 ~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      .|+|.|.|..|...+..+.|.+....
T Consensus        86 ~Y~C~a~N~~G~~~s~~~~l~~~~~~  111 (117)
T 2v9t_A           86 VYVCVARNYLGEAVSHDASLEVAAAA  111 (117)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEC---
T ss_pred             EEEEEEEeCccceEeeeEEEEhhhhh
Confidence            99999999999998778888886543

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.68  E-value=2e-17  Score=127.64  Aligned_cols=125  Identities=16%  Similarity=0.125  Sum_probs=82.5

Q ss_pred             EEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEE-eeeCCC
Q psy18191         83 LVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKA-DGYPEP  161 (238)
Q Consensus        83 l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~-~g~P~p  161 (238)
                      |.+.++..+|+|.|+|.+.+..  |           .....+.+.+..+|.+...+....+.+|+.+.|.|.+ .|.|.|
T Consensus        86 L~i~~v~~~D~G~Y~C~~~~~~--~-----------~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~  152 (214)
T 3jz7_A           86 INVTNLQLSDIGTYQCKVKKAP--G-----------VANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPL  152 (214)
T ss_dssp             EEECSCCGGGCEEEEEEEEETT--E-----------EEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSC
T ss_pred             EEEccCChhhCeEEEEEEEeCC--C-----------ccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCC
Confidence            5666777777777776654421  1           1111222224455554333333447889999999999 899999


Q ss_pred             EEEEEeCC--EEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccC
Q psy18191        162 RIEWYKDG--SLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       162 ~i~W~~~g--~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~  228 (238)
                      .+.|++++  ..+..   .......++.|.    |..+..+|+|.|+|.|.|..|... ..+.|.|..+
T Consensus       153 ~v~W~~~~~~~~~~~---~~~~~~~~~~L~----i~~~~~~d~G~Y~C~a~N~~g~~~-~~~~l~V~~P  213 (214)
T 3jz7_A          153 QFEWQKLSDSQTMPT---PWLAEMTSPVIS----VKNASSEYSGTYSCTVQNRVGSDQ-CMLRLDVVPP  213 (214)
T ss_dssp             EEEEEECSTTCCCCG---GGGGGTTSSEEE----ECSCCGGGCEEEEEEEECSSCEEE-EEEEECCBCC
T ss_pred             EEEEEECCCCCccCc---cceeccCCCEEE----EecCCHHHCEEEEEEEEcCCCcEE-EEEEEEEeCC
Confidence            99999954  33331   111122345554    566699999999999999999996 5999998744

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.68  E-value=1.1e-15  Score=113.16  Aligned_cols=102  Identities=25%  Similarity=0.359  Sum_probs=79.2

Q ss_pred             CCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEe-cCCcEEEEEeecCCCCCCCeEE
Q psy18191        127 DGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL-PAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       127 ~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                      .+..+|.|...+.++.+..|+.+.|.|.+.|.|.|.+.|++++..+... ....+.. .++...  +.|..+...|+|.|
T Consensus        37 ~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~-~~~~~~~~~~~~~~--L~I~~v~~~D~G~Y  113 (154)
T 1fhg_A           37 KPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES-RHFQIDYDEEGNCS--LTISEVCGDDDAKY  113 (154)
T ss_dssp             CCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCS-SSEEEEECTTCEEE--EEESSCCGGGCEEE
T ss_pred             cCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCC-CcEEEEECCCCeEE--EEECCCChhcCEEE
Confidence            3667899999888999999999999999999999999999999988753 2222222 223222  23778899999999


Q ss_pred             EEEEEeCCCceeEEEEEEEEccCCCCC
Q psy18191        206 WCVARNELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       206 ~C~a~N~~G~~~s~~~~L~V~~~~~~~  232 (238)
                      +|.|.|..|... ..+.|.|..++...
T Consensus       114 ~C~a~N~~G~~~-~~~~l~V~~~p~~~  139 (154)
T 1fhg_A          114 TCKAVNSLGEAT-CTAELLVETMGKEG  139 (154)
T ss_dssp             EEEEEETTEEEE-EEEEEEEECC----
T ss_pred             EEEEEECCCeEE-EEEEEEEeCcCcCC
Confidence            999999999986 59999998776543

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.68  E-value=6.4e-16  Score=130.67  Aligned_cols=156  Identities=17%  Similarity=0.220  Sum_probs=104.6

Q ss_pred             CCCccEEEecccccccc---ce------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceec-CCcc
Q psy18191         61 YPKPICLRFQDLLPQSK---QG------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHG-DGYR  130 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~---~g------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~-~v~~  130 (238)
                      .+.+.+.|++++..+..   ..      ...|.+..+..+|+|.|+|.+.+...  ...     .....+..... ....
T Consensus       148 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~--~~~-----~~~~~l~v~~~p~~~~  220 (403)
T 3laf_A          148 DPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPAS--TRT-----GNEAEVRILSDPGLHR  220 (403)
T ss_dssp             SSCCEEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSC--CCB-----CCCEEEEEECCCCCCE
T ss_pred             cCCCeEEEEECCEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCC--cee-----ccceeEEEecCCCccc
Confidence            34678999998875421   11      12466778888888888877665321  100     00111111100 0111


Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      ++.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... ........++.|.    |..+..+|+|.|+|.|.
T Consensus       221 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~L~----i~~~~~~d~G~Y~C~a~  295 (403)
T 3laf_A          221 QLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLR-SKKYSLLGGSNLL----ISNVTDDDSGTYTCVVT  295 (403)
T ss_dssp             EEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCS-SSSEEEETTTEEE----ECSCCGGGCEEEEEEEE
T ss_pred             CceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCC-CceEEECCccEEE----EeCCCHHHCEEEEEEEE
Confidence            234556677888999999999999999999999999999888653 2333334455555    56669999999999999


Q ss_pred             eCCCceeEEEEEEEEccCC
Q psy18191        211 NELGFARSKNATLDVAGKI  229 (238)
Q Consensus       211 N~~G~~~s~~~~L~V~~~~  229 (238)
                      |..|... ..+.|.|..++
T Consensus       296 n~~g~~~-~~~~l~V~~~p  313 (403)
T 3laf_A          296 YKNENIS-ASAELTVLVPP  313 (403)
T ss_dssp             ETTEEEE-EEEEEEEEEEE
T ss_pred             cCCCceE-EEEEEEEECCC
Confidence            9999985 58888886654

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.67  E-value=3.3e-16  Score=120.27  Aligned_cols=150  Identities=14%  Similarity=0.054  Sum_probs=90.3

Q ss_pred             cEEEecccccccc--------ceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEe
Q psy18191         65 ICLRFQDLLPQSK--------QGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITE  136 (238)
Q Consensus        65 ~~~w~~~~~~~~~--------~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~  136 (238)
                      .+.|+|++..+..        .....|.+.++...|+|.|+|.+.+... |    .........+.  ......+|.+..
T Consensus        34 ~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~-g----~~~~s~~~~l~--V~~~~~~p~i~~  106 (198)
T 1ugn_A           34 EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTA-G----RSESSDPLELV--VTGAYIKPTLSA  106 (198)
T ss_dssp             CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTT-E----ECCCCCCEEEE--EECSSCCCEEEE
T ss_pred             EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCCC-C----cccCCccEEEE--EcccccCCcccc
Confidence            5999999875421        1123577889999999999987765320 1    11111111111  111123566665


Q ss_pred             CCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecC---CcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191        137 HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPA---GSLFFLSLVHGKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---~~l~~~~vi~~v~~~d~G~Y~C~a~N~~  213 (238)
                      .+ ...+.+|+++.|.|.+.|. .|.+.|+|+|..+............+   +.|.    |..++.+|+|.|+|.|.|..
T Consensus       107 ~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~----i~~v~~~D~G~Y~C~a~n~~  180 (198)
T 1ugn_A          107 QP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFS----VGPVSPSRRWWYRCYAYDSN  180 (198)
T ss_dssp             ES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEEE----ECCCCTTSCEEEEEEEECTT
T ss_pred             CC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEEE----ecccCcccCeEEEEEEEeCC
Confidence            44 3678899999999999988 78999999998775320000111111   2333    67779999999999999987


Q ss_pred             Cce----eEEEEEEEEcc
Q psy18191        214 GFA----RSKNATLDVAG  227 (238)
Q Consensus       214 G~~----~s~~~~L~V~~  227 (238)
                      +..    .+..+.|.|.+
T Consensus       181 ~~~~~s~~S~~~~l~V~g  198 (198)
T 1ugn_A          181 SPYEWSLPSDLLELLVLG  198 (198)
T ss_dssp             STTEECCCCCCEEEEEEC
T ss_pred             CCccccCcCceEEEEecC
Confidence            632    24577887753

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.67  E-value=1.3e-16  Score=133.22  Aligned_cols=150  Identities=13%  Similarity=0.063  Sum_probs=101.1

Q ss_pred             CCCccEEEecccccccc-------ceEEEEEcCCCCCCCCC-ceEEEeCCCcccCCceEEeCCCCcceecceecCCccCC
Q psy18191         61 YPKPICLRFQDLLPQSK-------QGLMYLVGSQASPDYPN-RFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVP  132 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~-------~g~~~l~~~~~~~~~~g-~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P  132 (238)
                      .+.+.+.|++++.....       .....+.+.++...|+| .|+|.+.+..  |.           ....+...+..+|
T Consensus       185 ~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~--g~-----------~~~~~~l~V~~~P  251 (347)
T 2ifg_A          185 RGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDV--GR-----------AEVSVQVNVSFPA  251 (347)
T ss_dssp             SSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETT--EE-----------CCEEECCCCBEEE
T ss_pred             CCCCEEEEEcCCceeecccccceecccceEEEeeCChHHCCCeEEEEEEcCC--CC-----------EEEEEEEEEcCCC
Confidence            34678899998864321       12346777888899999 9997766532  21           1112233355777


Q ss_pred             EEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecC-----CcEEEEEeecCCCCCCCeEEEE
Q psy18191        133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPA-----GSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       133 ~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~-----~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      .+ .   .....+|+.+.|.|.+.|.|.|.+.|+++|..+... .........     ....-...|..++.+|+|.|+|
T Consensus       252 ~i-~---~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C  326 (347)
T 2ifg_A          252 SV-Q---LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNET-SFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTL  326 (347)
T ss_dssp             EE-E---ECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCC-SSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEE
T ss_pred             ee-e---eccCccCceEEEEEEeeecCCCcEEEEeCCEECCCC-cceeeEEEeecCCCcccceEEEECCCCcccCceEEE
Confidence            76 1   112357899999999999999999999999988743 111111111     1111122367779999999999


Q ss_pred             EEEeCCCceeEEEEEEEEccCC
Q psy18191        208 VARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      .|.|.+|... ..+.|.|.++|
T Consensus       327 ~a~N~~G~~~-~~~~l~V~~~P  347 (347)
T 2ifg_A          327 LAANPFGQAS-ASIMAAFMDNP  347 (347)
T ss_dssp             EEEETTEEEE-EEEEECSCCCC
T ss_pred             EEecCCCcee-eEEEEEecCCC
Confidence            9999999996 59999987654

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=1.3e-16  Score=109.08  Aligned_cols=92  Identities=24%  Similarity=0.373  Sum_probs=74.1

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      +..+|.|...+....+.+|+++.|.|.+.|.|.|.+.|++++..+...  ..........|.    |..+..+|+|.|+|
T Consensus         8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~--~~~~~~~~~~L~----i~~v~~~D~G~Y~C   81 (99)
T 2yr3_A            8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA--RSTCEAGVAELH----IQDALPEDHGTYTC   81 (99)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSC--CCEEETTEEEEE----ECSCCTTCCBCEEE
T ss_pred             cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECccc--ceEeeCCeEEEE----ECCCChhhCEEEEE
Confidence            457899998888999999999999999999999999999999887642  222221112333    67779999999999


Q ss_pred             EEEeCCCceeEEEEEEEEc
Q psy18191        208 VARNELGFARSKNATLDVA  226 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~  226 (238)
                      .|.|..|... ..+.|.|+
T Consensus        82 ~a~N~~g~~~-~~~~l~V~   99 (99)
T 2yr3_A           82 LAENALGQVS-CSAWVTVH   99 (99)
T ss_dssp             EEECSSCEEE-EECCEEEC
T ss_pred             EEEECCCeEE-EEEEEEEC
Confidence            9999999986 58888874

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=2.6e-16  Score=111.14  Aligned_cols=97  Identities=33%  Similarity=0.423  Sum_probs=79.7

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      ..+|.|...+.+..+.+|+++.|.|.+.|.|.|.+.|+++|..+... ........++.|.    |..+..+|+|.|+|.
T Consensus         6 ~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~-~~~~~~~~~~~L~----i~~v~~~D~G~Y~C~   80 (118)
T 2eo9_A            6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQ-DSRIKQLENGVLQ----IRYAKLGDTGRYTCI   80 (118)
T ss_dssp             CCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTT-STTEEEEETTEEE----EESCCGGGCCCEEEE
T ss_pred             CCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCC-CCeEEEccCCEEE----EccCCcCCCEEEEEE
Confidence            36788888888899999999999999999999999999999888643 2334445567666    455599999999999


Q ss_pred             EEeCCCceeEEEEEEEEccCCCC
Q psy18191        209 ARNELGFARSKNATLDVAGKIST  231 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~~~~~  231 (238)
                      |.|..|... ..+.|.|...+.+
T Consensus        81 a~n~~g~~~-~~~~l~V~~~~~p  102 (118)
T 2eo9_A           81 ASTPSGEAT-WSAYIEVQEFGVP  102 (118)
T ss_dssp             EECSSCEEE-EECCEEEECCSCC
T ss_pred             EEcCCCcEE-EEEEEEEEeCCCC
Confidence            999999986 5899999876543

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.66  E-value=1.6e-15  Score=125.50  Aligned_cols=152  Identities=11%  Similarity=0.030  Sum_probs=100.6

Q ss_pred             CccEEEeccccccccce--E----EEEEcCCCCCCCCCceEEEeCCC--cccCCceEEeCCCCcceecceecCCccCC--
Q psy18191         63 KPICLRFQDLLPQSKQG--L----MYLVGSQASPDYPNRFSLCNNKT--WQKGLPLKKYHPPSLPLFPGVHGDGYRVP--  132 (238)
Q Consensus        63 ~~~~~w~~~~~~~~~~g--~----~~l~~~~~~~~~~g~y~~~~~~~--~~~G~y~c~~~~~~~~~~~~~~~~v~~~P--  132 (238)
                      .+.+.|++++..+...+  .    ..|.+.++..+|+|.|+|.+.+.  .....+...         ..+.+.+..+|  
T Consensus       158 ~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s---------~~~~l~V~~~~~~  228 (329)
T 3oq3_B          158 YNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVS---------RCKILTVIPSQDH  228 (329)
T ss_dssp             CCEEEEEETTEECCCSSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEE---------EEEEEEEECCCCC
T ss_pred             CceEEEEECCccCCCCCceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEE---------eeEEEEEECCCCC
Confidence            68899999988654221  1    35777889999999999877753  221111100         01111122333  


Q ss_pred             --EEEeCCCceEEeCCCcEEEEEEEeeeC---CC-EEEEEeCCEEeeccCCccEEE--ecCCcEEEEEeecCCCCCCCe-
Q psy18191        133 --RITEHPASAVVPRHEPTTLNCKADGYP---EP-RIEWYKDGSLVSAEIGSHRIL--LPAGSLFFLSLVHGKKDTDSG-  203 (238)
Q Consensus       133 --~i~~~~~~~~~~~G~~~~L~C~~~g~P---~p-~i~W~~~g~~l~~~~~~~~~~--~~~~~l~~~~vi~~v~~~d~G-  203 (238)
                        .+. .+....+.+|+.+.|.|.+.|.|   .| .+.|+++|..+..........  .........+.|..+..+|+| 
T Consensus       229 ~~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  307 (329)
T 3oq3_B          229 RFKLI-LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGN  307 (329)
T ss_dssp             CEEEE-CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTC
T ss_pred             CCcee-cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCC
Confidence              333 56678899999999999999998   78 899999998753321211111  111112223347888999999 


Q ss_pred             EEEEEEEeCCCceeEEEEEEEE
Q psy18191        204 VYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       204 ~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      .|+|.|.|..|... ..+.|.|
T Consensus       308 ~Y~C~a~N~~G~~~-~~~~l~v  328 (329)
T 3oq3_B          308 TYTCRGHNYYFDKT-LTTTVVL  328 (329)
T ss_dssp             EEEEEEECSSCEEE-EEEEEEE
T ss_pred             cEEEEEEecCCceE-EEEEEEe
Confidence            99999999999996 4888876

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.66  E-value=8.8e-16  Score=119.38  Aligned_cols=159  Identities=12%  Similarity=0.056  Sum_probs=94.9

Q ss_pred             CCccEEEecc---ccccccc-eE-----EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCC
Q psy18191         62 PKPICLRFQD---LLPQSKQ-GL-----MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVP  132 (238)
Q Consensus        62 ~~~~~~w~~~---~~~~~~~-g~-----~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P  132 (238)
                      |.+.+.|++.   +..+... .+     ..|.+.++..+|+|.|+|.+.+..  +. ..    .....+.  .. ...+|
T Consensus        36 p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~--~~-~~----s~~~~l~--v~-~~~~p  105 (213)
T 2x1w_L           36 SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKIND--ES-YQ----SIMYIVV--VV-GYRIY  105 (213)
T ss_dssp             TTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC------C-EE----CCCEEEE--EC-BCCEE
T ss_pred             CCcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECC--ee-EE----EEEEEEE--Ee-CCccc
Confidence            4578899884   4433211 11     236778888999999998776521  10 00    0101111  11 12345


Q ss_pred             EEEeC-CCceEEeCCCcEEEEEEEeeeC--CCEEEEEeCCEEeeccCC-ccEEEecC----CcEEEEEeecCCCCCCCeE
Q psy18191        133 RITEH-PASAVVPRHEPTTLNCKADGYP--EPRIEWYKDGSLVSAEIG-SHRILLPA----GSLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       133 ~i~~~-~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~g~~l~~~~~-~~~~~~~~----~~l~~~~vi~~v~~~d~G~  204 (238)
                      .+... +..+.+.+|+++.|.|.+.|.|  .+.+.|++++..+..... ........    ......+.|..++.+|+|.
T Consensus       106 ~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  185 (213)
T 2x1w_L          106 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL  185 (213)
T ss_dssp             EEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEE
T ss_pred             ceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEE
Confidence            45444 4445899999999999999865  457999999876432100 00000001    1112223478889999999


Q ss_pred             EEEEEEeCCCceeEEEEEEEEccCCCC
Q psy18191        205 YWCVARNELGFARSKNATLDVAGKIST  231 (238)
Q Consensus       205 Y~C~a~N~~G~~~s~~~~L~V~~~~~~  231 (238)
                      |+|.|.|..|... ..+.|.|..++-+
T Consensus       186 Y~C~a~N~~g~~~-~~~~l~V~~~p~i  211 (213)
T 2x1w_L          186 YTCAASSGLMTKK-NSTFVRVHEDPIE  211 (213)
T ss_dssp             EEEEEECSSCEEE-EEEEEEEEC----
T ss_pred             EEEEEecCCCcEE-EEEEEEEeccccc
Confidence            9999999999996 6999999877643

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.66  E-value=2.1e-16  Score=123.75  Aligned_cols=151  Identities=15%  Similarity=0.096  Sum_probs=96.5

Q ss_pred             CccEEEecccccccc--------ceEE--EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCC
Q psy18191         63 KPICLRFQDLLPQSK--------QGLM--YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVP  132 (238)
Q Consensus        63 ~~~~~w~~~~~~~~~--------~g~~--~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P  132 (238)
                      .+.+.|+|++.....        ....  .|.+.++..+|+|.|+|.+.+..  |    .........+.  ......+|
T Consensus        36 ~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~--~----~~~~s~~~~l~--V~~~~~~P  107 (218)
T 1uct_A           36 AYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGH--Y----RFRYSDTLELV--VTGLYGKP  107 (218)
T ss_dssp             CSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETT--T----EEEECCCEEEE--EECSSCCC
T ss_pred             CCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEcCC--C----ceeecCCEEEE--EcCcccCC
Confidence            567999999874321        1112  57788888999999998776531  1    00001111111  11123467


Q ss_pred             EEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       133 ~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      .+...+ ...+.+|++++|.|.+.+.|.|.+.|+|+|..+..   .......++.|.    |..++.+|+|.|+|.|.|.
T Consensus       108 ~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~---~~~~~~~~~~L~----I~~v~~~D~G~Y~C~a~n~  179 (218)
T 1uct_A          108 FLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLP---QHQSGEHPANFS----LGPVDLNVSGIYRCYGWYN  179 (218)
T ss_dssp             EEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCC---SEEECSSSEEEE----CCSCCGGGCEEEEEEEECT
T ss_pred             EEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccc---cccCCCccCEEE----EccCCcccCEEEEEEEEcC
Confidence            777665 46789999999999777778899999999987653   111112233443    6777999999999999986


Q ss_pred             CC----ceeEEEEEEEEccCC
Q psy18191        213 LG----FARSKNATLDVAGKI  229 (238)
Q Consensus       213 ~G----~~~s~~~~L~V~~~~  229 (238)
                      .+    +..|..+.|.|.+.+
T Consensus       180 ~~~~~~s~~S~~~~l~V~g~~  200 (218)
T 1uct_A          180 RSPYLWSFPSNALELVVTDSI  200 (218)
T ss_dssp             TSTTEECCCCCCEEEEEC---
T ss_pred             CCCCcCCCCCCcEEEEEecCC
Confidence            42    234568899998765

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.66  E-value=5.3e-16  Score=116.94  Aligned_cols=139  Identities=14%  Similarity=0.137  Sum_probs=97.9

Q ss_pred             ccEEEeccccccccceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEE
Q psy18191         64 PICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVV  143 (238)
Q Consensus        64 ~~~~w~~~~~~~~~~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~  143 (238)
                      ..+.|++++..+... ...|.+.++..+|+|.|+|...+...          .....+.     +..++.+... ....+
T Consensus        35 ~~i~W~~~~~~~~~~-~~~L~i~~v~~~d~G~Y~C~~~~~~~----------s~~~~l~-----V~~~~~~~~~-~~~~~   97 (176)
T 1f2q_A           35 SSTKWFHNGSLSEET-NSSLNIVNAKFEDSGEYKCQHQQVNE----------SEPVYLE-----VFSDWLLLQA-SAEVV   97 (176)
T ss_dssp             -CCEEEETTEECSCC-SSEEEECSCCGGGCEEEEEECTTSSC----------CCCEEEE-----EECSSEEEEE-SCSEE
T ss_pred             ceEEEEECCeECCCC-ceEEEEeccceecCEEEEEEcCCccc----------cccEEEE-----EeCcceeecC-Cccee
Confidence            368999998866543 34567788999999999987765321          0111111     2234444443 34677


Q ss_pred             eCCCcEEEEEEE-eeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEE
Q psy18191        144 PRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNAT  222 (238)
Q Consensus       144 ~~G~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~  222 (238)
                      .+|+.+.|.|.+ .+.|.|.+.|+++|..+...       ..++.|.    |..+..+|+|.|+|.|.|..|...+..+.
T Consensus        98 ~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~-------~~~~~L~----i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~  166 (176)
T 1f2q_A           98 MEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW-------YENHNIS----ITNATVEDSGTYYCTGKVWQLDYESEPLN  166 (176)
T ss_dssp             ETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC-------CCSSEEE----ESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             eCCCCEEEEEEecCCCCceEEEEEECCEEEeee-------cCCCeEE----ECCCCcccCEEEEEEEEeCCcceEecCEE
Confidence            899999999999 46677899999999887532       1234444    56669999999999999987666566789


Q ss_pred             EEEccCCC
Q psy18191        223 LDVAGKIS  230 (238)
Q Consensus       223 L~V~~~~~  230 (238)
                      |.|.+++.
T Consensus       167 l~V~~~p~  174 (176)
T 1f2q_A          167 ITVIKAPR  174 (176)
T ss_dssp             EEEECSCC
T ss_pred             EEEecCCC
Confidence            99988764

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.66  E-value=2.2e-16  Score=122.32  Aligned_cols=155  Identities=16%  Similarity=0.132  Sum_probs=90.8

Q ss_pred             CCccEEEeccccccccc--eEEEEEcCCCCCCCCCceEEEeCCCcccCCceE-EeCCC-Ccceecce-----------ec
Q psy18191         62 PKPICLRFQDLLPQSKQ--GLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLK-KYHPP-SLPLFPGV-----------HG  126 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~--g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c-~~~~~-~~~~~~~~-----------~~  126 (238)
                      +.+.+.|+|++..+...  ....|.+..+..+|+|.|+|.+++. . ....- .+... ........           ..
T Consensus        28 p~~~i~W~k~g~~l~~~~~~~~~L~i~~v~~~DsG~Y~C~~~~~-~-s~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~  105 (204)
T 1sy6_A           28 EAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQN-K-SKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKK  105 (204)
T ss_dssp             CSSEEEEEETTEEEEEEESSCCCEEEEEGGGCCEEEEEEESSSS-C-CCCEEEEEEC-----------------------
T ss_pred             CCCEEEEEECCEECCCCCCCCCeEEeCCCCcCCCEEEEEEecCC-C-CeeEEEEEEEecccccccccccccccccccccc
Confidence            56789999999865431  1234566788889999999774431 1 10000 00000 00000000           00


Q ss_pred             ---C-CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCC-CCCC
Q psy18191        127 ---D-GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGK-KDTD  201 (238)
Q Consensus       127 ---~-v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v-~~~d  201 (238)
                         . ...+|.+...|. ....+|+++.|.|.  |.|.|.+.|++++..+........+...++.|.    |..+ ..+|
T Consensus       106 ~~~~~~~~~~~~~~~p~-~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~~L~----I~~v~~~~D  178 (204)
T 1sy6_A          106 DGSDGNEEMGGITQTPY-KVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLS----LKEFSELEQ  178 (204)
T ss_dssp             -------------CCCC-EEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEEETTEEE----ETTCCHHHH
T ss_pred             ccccccccccceecCCc-eeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEecCCCEEE----EeeCCcccc
Confidence               0 001233332222 22338999999999  889999999999998865322222333466665    7888 8999


Q ss_pred             CeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        202 SGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       202 ~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      +|.|+|.|.|..|...+..++|.|
T Consensus       179 ~G~Y~C~A~N~~g~~~s~~l~l~~  202 (204)
T 1sy6_A          179 SGYYVCYPRGSKPEDANFYLYLRA  202 (204)
T ss_dssp             CEEEEEEETTSCGGGSSCEEEEEE
T ss_pred             CEEEEEEeccCCCCceeEEEEEEE
Confidence            999999999999985344666665

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.66  E-value=4.4e-16  Score=118.81  Aligned_cols=137  Identities=11%  Similarity=0.049  Sum_probs=85.6

Q ss_pred             cEEEeccccccccceEEEEEcCC-CCCCCCCceEEEeCCCcccCCceEEeCCCCcceecce-------ecCCccCCEEEe
Q psy18191         65 ICLRFQDLLPQSKQGLMYLVGSQ-ASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGV-------HGDGYRVPRITE  136 (238)
Q Consensus        65 ~~~w~~~~~~~~~~g~~~l~~~~-~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~-------~~~v~~~P~i~~  136 (238)
                      .+.|+|++..+....-..|.+.+ +..+|+|.|+|.+.+...  .................       ...+..+|.+..
T Consensus        28 ~i~W~k~g~~l~~~~~~~L~I~~~~~~~D~G~Y~C~a~n~~g--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (186)
T 1jbj_A           28 NLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNK--NTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGS  105 (186)
T ss_dssp             TCEEEETTEEECSCCCSEEEEESCCTTTSCEEEEEECSSCCC--CCCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCC
T ss_pred             ceEEEECCEECCCCCCCEEEECCCCccccCEEEEEEEEeCCC--cEEEEEEEEEecccccccccccccccccCCcccccc
Confidence            48999999866553333577888 999999999988777432  22221111100000000       000111111111


Q ss_pred             C----CCce---EEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        137 H----PASA---VVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       137 ~----~~~~---~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .    ....   .+.+|+++.|.|.+   |.|.++|+|+|..+...  .    ...+.|.+..+    ..+|+|.|+|.|
T Consensus       106 ~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~--~----~~~~~L~i~~v----~~~D~G~Y~C~a  172 (186)
T 1jbj_A          106 QTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPL--N----ATKNTWNLGNN----AKDPRGTYQCQG  172 (186)
T ss_dssp             SCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCS--S----CCSSCCEEEET----TSCCEEEEEEEE
T ss_pred             ccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECccc--C----CCcceEEECCC----CcCcCEEEEEEE
Confidence            0    0112   23489999999998   88999999999988642  1    13566765554    999999999999


Q ss_pred             EeCCCce
Q psy18191        210 RNELGFA  216 (238)
Q Consensus       210 ~N~~G~~  216 (238)
                      .|..|..
T Consensus       173 ~N~~g~~  179 (186)
T 1jbj_A          173 AKETSNP  179 (186)
T ss_dssp             SSCEEEE
T ss_pred             EcCcCCc
Confidence            9998866

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.66  E-value=7.9e-16  Score=116.64  Aligned_cols=115  Identities=10%  Similarity=0.033  Sum_probs=84.3

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP  161 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p  161 (238)
                      .|.+.++..+|+|.|+|...+..  |    .      ..+.     +.   .+.. +....+.+|+++.|.|.+.+.|.|
T Consensus        69 ~L~i~~v~~~D~G~Y~C~~~~~~--~----~------~~l~-----V~---~~~~-~~~~~v~~g~~~~l~C~~~~~p~~  127 (184)
T 2ny1_B           69 PLIIKNLKIEDSDTYICEVEDQK--E----E------VQLL-----VF---GLTA-NSDTHLLQGQSLTLTLESPPGSSP  127 (184)
T ss_dssp             CEEECSCCGGGCEEEEEEETTEE--E----E------EEEE-----EE---EEEE-SSCSEEETTCCEEEEEECCTTCCC
T ss_pred             EEEEecCCHHHCEEEEEEEEcCC--C----c------EEEE-----EE---EecC-CCCceeecCCCEEEEEEcCCCCCC
Confidence            47778888888888887766531  1    0      0111     11   1222 345678999999999999999999


Q ss_pred             EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCCCC
Q psy18191        162 RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST  231 (238)
Q Consensus       162 ~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~  231 (238)
                      .+.|++++..+.         ...+.|.    |..+..+|+|.|+|.|.|..|... ..+.|.|.+.++.
T Consensus       128 ~v~W~~~~~~~~---------~~~~~L~----i~~v~~~d~G~Y~C~a~n~~~~~~-~~~~l~V~~~p~~  183 (184)
T 2ny1_B          128 SVQCRSPRGKNI---------QGGKTLS----VSQLELQDSGTWTCTVLQNQKKVE-FKIDIVVLAFQKA  183 (184)
T ss_dssp             EEEEECTTSCEE---------EESSEEE----ESSCCGGGCEEEEEEEEETTEEEE-EEEEEEEECCCC-
T ss_pred             EEEEEeCCCccc---------cCceEEE----EecCCcCCCeEEEEEEEECCceEE-EEEEEEEEecCCC
Confidence            999999875542         2345565    566699999999999999999986 5999999887764

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.65  E-value=1.4e-15  Score=105.01  Aligned_cols=98  Identities=16%  Similarity=0.240  Sum_probs=70.7

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEE--Ee-cCCcEEEEEeecCCCCCCCeEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI--LL-PAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~--~~-~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                      ..||.|.....   ...+..+.|.|.+.|.|.|.++|+++|..+..+ .....  .. ........+.|..+..+|+|.|
T Consensus         2 ~~pP~i~~~~~---~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   77 (103)
T 1wwb_X            2 HFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNES-KYICTKIHVTNHTEYHGCLQLDNPTHMNNGDY   77 (103)
T ss_dssp             CCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCC-SSEEEEEEEECSSEEEEEEEEESCCGGGCEEE
T ss_pred             CCCCEEEeccC---ceECcEEEEEEEEEEeCCCEEEEEECCEECCCC-CcEeEEEEecCCcEEEEEEEECCCCcccCEEE
Confidence            46777643222   245788999999999999999999999998754 21111  11 1222112233677799999999


Q ss_pred             EEEEEeCCCceeEEEEEEEEccCCCC
Q psy18191        206 WCVARNELGFARSKNATLDVAGKIST  231 (238)
Q Consensus       206 ~C~a~N~~G~~~s~~~~L~V~~~~~~  231 (238)
                      +|.|.|.+|... .++.|.|..+|.+
T Consensus        78 ~C~A~N~~G~~~-~~~~l~V~~~P~~  102 (103)
T 1wwb_X           78 TLIAKNEYGKDE-KQISAHFMGWPGI  102 (103)
T ss_dssp             EEEEECSSCEEE-EEEEECCSCCCCC
T ss_pred             EEEEEeCCCcEe-EEEEEEECCCCCC
Confidence            999999999997 5999999887754

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.65  E-value=7.8e-16  Score=124.60  Aligned_cols=104  Identities=15%  Similarity=0.154  Sum_probs=72.9

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecC--CcEEEEEeecCCCCCCCeEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPA--GSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~--~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      .+|.+...+....+.+|+++.|.|.+.|.|.|.+.|++++................  ......+.|..+..+|+|.|+|
T Consensus       180 ~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  259 (289)
T 3mjg_X          180 SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTC  259 (289)
T ss_dssp             CCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEE
T ss_pred             CCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEE
Confidence            46777666666789999999999999999999999998765433211111111111  1122233478889999999999


Q ss_pred             EEEeCCCceeEEEEEEEEccCCCCCCC
Q psy18191        208 VARNELGFARSKNATLDVAGKISTATD  234 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~~~~~~~~~  234 (238)
                      .|.|.+|... .++.|.|.+.+.....
T Consensus       260 ~a~N~~G~~~-~~~~l~v~~~~~~~~~  285 (289)
T 3mjg_X          260 NVTESVNDHQ-DEKAINITVVESGHHH  285 (289)
T ss_dssp             EEEETTTTEE-EEEEEEEEEEC-----
T ss_pred             EeecCCCCce-eEEEEEEEEEecCccc
Confidence            9999999997 5999999887765443

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.65  E-value=2.2e-16  Score=120.14  Aligned_cols=146  Identities=15%  Similarity=0.119  Sum_probs=94.6

Q ss_pred             CCccEEEeccccccccceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCce
Q psy18191         62 PKPICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASA  141 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~  141 (238)
                      +.+.+.|+|++... ..+...|.+.++..+|+|.|+|.+.+...      .........+.  ......+|.+...+ ..
T Consensus        34 ~~~~~~W~k~g~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g------~~~~s~~~~l~--V~~~~~~p~i~~~p-~~  103 (184)
T 2gi7_A           34 GVDLYRLEKLSSSR-YQDQAVLFIPAMKRSLAGRYRCSYQNGSL------WSLPSDQLELV--ATGVFAKPSLSAQP-GP  103 (184)
T ss_dssp             TCSEEEEEETTTCC-EESSSEEEESSCCGGGCEEEEEEEEETTE------EBCCCCCEEEE--EESSSCCCEEEEEC-CC
T ss_pred             CCCEEEEEECCccc-cCcccEEEECcCChhhCceEEEEEEcCCC------ccCCCCCEEEE--ecCcCCCCEEEeCC-Cc
Confidence            34679999998752 12233577889999999999987765321      11111111111  11123467777665 45


Q ss_pred             EEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCc----ee
Q psy18191        142 VVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGF----AR  217 (238)
Q Consensus       142 ~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~----~~  217 (238)
                      .+.+|+.+.|.|.+.+.| +.+.|+|+|..+...   .......+.|.+..+    +.+|+|.|+|.|.|..+.    ..
T Consensus       104 ~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~---~~~~~~~~~L~i~~v----~~~D~G~Y~C~a~n~~~~~~~s~~  175 (184)
T 2gi7_A          104 AVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYK---NPERWYRASFPIITV----TAAHSGTYRCYSFSSRDPYLWSAP  175 (184)
T ss_dssp             SSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSC---CCCEEEEESSSEEEE----TTCCSEEEEEEEECTTSTTBCCCC
T ss_pred             eecCCCcEEEEEEcCCCC-cEEEEEECCCcCcce---ecCCCceEEEEEccC----CccCCeEEEEEEEeCCCCcccCCC
Confidence            677999999999987655 699999999876532   111223455665555    999999999999998643    23


Q ss_pred             EEEEEEEE
Q psy18191        218 SKNATLDV  225 (238)
Q Consensus       218 s~~~~L~V  225 (238)
                      |..+.|.|
T Consensus       176 S~~~~l~V  183 (184)
T 2gi7_A          176 SDPLELVV  183 (184)
T ss_dssp             CCCEEEEC
T ss_pred             CCcEEEEe
Confidence            44666654

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.65  E-value=4.5e-16  Score=121.92  Aligned_cols=133  Identities=13%  Similarity=0.108  Sum_probs=81.0

Q ss_pred             EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEee-e
Q psy18191         80 LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADG-Y  158 (238)
Q Consensus        80 ~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g-~  158 (238)
                      ...|.|.++..+|+|.|+|.+.+..  |....        .+.     +..++.+...+....+.+|+.+.|.|.+.| .
T Consensus        82 ~~~L~I~~v~~~D~G~Y~C~a~n~~--~~~~~--------~v~-----~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~  146 (226)
T 4f80_A           82 KAALRIHNVTASDSGKYLCYFQDGD--FYEKA--------LVE-----LKVAALGSDLHVDVKGYKDGGIHLECRSTGWY  146 (226)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETT--EEEEE--------EEE-----EEEEBCCCCCEEEEEEEETTEEEEEEEEEEEB
T ss_pred             eEEEEEeeCchHHCeeEEEEEECCC--cEEEE--------EEE-----EeeccceecccceeeeccCCceeeEEEeccCC
Confidence            3467888899999999997765532  21111        111     111222222223466788999999999988 4


Q ss_pred             CCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        159 PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       159 P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      |.|.|+|++++..+............++.+.+..+ ..++.+|+|.|+|.|.|.+|... +.+.|.|.++.
T Consensus       147 P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~-l~v~~~d~G~YtC~a~N~~g~~~-~~~~v~v~ep~  215 (226)
T 4f80_A          147 PQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAAS-VIMRGSSGEGVSCTIRSSLLGLE-KTASISIADPF  215 (226)
T ss_dssp             SCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEE-EEECC----CEEEEEEETTTTEE-EEEEECCCTTT
T ss_pred             CCCEEEEEECCceEcCCCceEEEECCCCcEEEEEE-EEechhcCcEEEEEEEeCCCCeE-EEEEEEECCCC
Confidence            99999999965444322122223334454443322 22388999999999999999997 59999987654

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.65  E-value=3.4e-16  Score=132.00  Aligned_cols=163  Identities=17%  Similarity=0.185  Sum_probs=99.8

Q ss_pred             CCCccEEEeccc---ccccc-----ceE-----EEEEcCCCCCCCCC---ceEEEeCCCcccCCceEEeCCCCcceecce
Q psy18191         61 YPKPICLRFQDL---LPQSK-----QGL-----MYLVGSQASPDYPN---RFSLCNNKTWQKGLPLKKYHPPSLPLFPGV  124 (238)
Q Consensus        61 ~~~~~~~w~~~~---~~~~~-----~g~-----~~l~~~~~~~~~~g---~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~  124 (238)
                      .|.+.+.|++++   .+...     ..+     ..|.+.++...|+|   .|+|.+.+......................
T Consensus       128 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~  207 (395)
T 1bih_A          128 YPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNS  207 (395)
T ss_dssp             ESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSS
T ss_pred             CCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccc
Confidence            456789999986   12110     111     13455667777888   888777664332111111000000000000


Q ss_pred             ecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEe--cCC-cEEEEEeecCCCCCC
Q psy18191        125 HGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL--PAG-SLFFLSLVHGKKDTD  201 (238)
Q Consensus       125 ~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~--~~~-~l~~~~vi~~v~~~d  201 (238)
                      ......+|.+  .+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+...........  ..+ .|.    |..+..+|
T Consensus       208 ~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~----i~~~~~~d  281 (395)
T 1bih_A          208 GYKGEPVPQY--VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLL----FKTTLPED  281 (395)
T ss_dssp             CCCCCCEEEE--ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEE----ESSCCGGG
T ss_pred             cccCCcCcee--cCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEE----EccCChhh
Confidence            0001234555  35678899999999999999999999999999998865322222111  122 344    66779999


Q ss_pred             CeEEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        202 SGVYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       202 ~G~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      +|.|+|.|.|..|...+..+.|.|..+|
T Consensus       282 ~G~Y~C~a~n~~g~~~~~~~~l~V~~~P  309 (395)
T 1bih_A          282 EGVYTCEVDNGVGKPQKHSLKLTVVSAP  309 (395)
T ss_dssp             CEEEEEEECCSSSSCEEEEEEEEEEEEE
T ss_pred             CEEEEEEEEeCCCCceEEEEEEEEEcCC
Confidence            9999999999999976558888887654

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.65  E-value=7.4e-16  Score=127.01  Aligned_cols=150  Identities=14%  Similarity=0.158  Sum_probs=99.8

Q ss_pred             CCCccEEEecccc--ccc-----cce----EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCc
Q psy18191         61 YPKPICLRFQDLL--PQS-----KQG----LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGY  129 (238)
Q Consensus        61 ~~~~~~~w~~~~~--~~~-----~~g----~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~  129 (238)
                      .|.+.+.|+++..  ...     ..+    ...|.+..+..+|+|.|+|.+.+..  |           .....+.+.+.
T Consensus       163 ~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~--~-----------~~~~~~~l~V~  229 (331)
T 3u83_A          163 KPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHM--D-----------RFKESLTLNVQ  229 (331)
T ss_dssp             BSCCEEEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETT--E-----------EEEEEEECCEE
T ss_pred             cCCceEEEEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCC--C-----------cceeeEEEEEe
Confidence            4567888988532  110     011    1235556667777788887665532  1           11122333355


Q ss_pred             cCCEEEeC-CCceEEeCCCcEEEEEEEeeeCCCE-EEEEeCCEEeeccCCccEEEecCCcEEEEEeec-CCCCCCCeEEE
Q psy18191        130 RVPRITEH-PASAVVPRHEPTTLNCKADGYPEPR-IEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVH-GKKDTDSGVYW  206 (238)
Q Consensus       130 ~~P~i~~~-~~~~~~~~G~~~~L~C~~~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~-~v~~~d~G~Y~  206 (238)
                      .+|.+... +....+.+|+.+.|.|.+.|.|.|. +.|++++..+...     ....++.|.    |. .+..+|+|.|+
T Consensus       230 ~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~-----~~~~~~~L~----i~~~v~~~d~G~Y~  300 (331)
T 3u83_A          230 YEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG-----VEAQNRTLF----FKGPINYSLAGTYI  300 (331)
T ss_dssp             EEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT-----EEEETTEEE----ECSCCCGGGCEEEE
T ss_pred             cCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCccccc-----ceecCcEEE----EeCCCccccCeEEE
Confidence            67777643 4456678999999999999999998 9999999877532     223456665    45 56999999999


Q ss_pred             EEEEeCCCceeEEEEEEEEccCCCCCC
Q psy18191        207 CVARNELGFARSKNATLDVAGKISTAT  233 (238)
Q Consensus       207 C~a~N~~G~~~s~~~~L~V~~~~~~~~  233 (238)
                      |.|.|..|... ..+.|.|........
T Consensus       301 C~a~N~~G~~~-~~~~l~V~~~~~~~~  326 (331)
T 3u83_A          301 CEATNPIGTRS-GQVEVNITEAAALEH  326 (331)
T ss_dssp             EEEEETTEEEE-EEEEECCBC------
T ss_pred             EEEEeccccce-EEEEEEEeccchhhh
Confidence            99999999996 599999988765543

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.64  E-value=6e-16  Score=118.07  Aligned_cols=147  Identities=14%  Similarity=0.106  Sum_probs=93.7

Q ss_pred             ccEEEeccccccc--------cceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEE
Q psy18191         64 PICLRFQDLLPQS--------KQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRIT  135 (238)
Q Consensus        64 ~~~~w~~~~~~~~--------~~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~  135 (238)
                      +.+.|+|++....        ......|.+.++...|+|.|+|.+.+...      .........+.  ......+|.+.
T Consensus        32 ~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~------~~~~s~~~~l~--V~~~~~~p~i~  103 (188)
T 1oll_A           32 VEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL------WSEPSNLLDLV--VTEMYDTPTLS  103 (188)
T ss_dssp             CEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE------ECCCCCCEEEE--EESCSCCCEEE
T ss_pred             CEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCC------CCCCCCceEEE--ecccCCCCeEE
Confidence            5789999886432        11234677888999999999987654211      11111111111  11122367777


Q ss_pred             eCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC-
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG-  214 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G-  214 (238)
                      ..+ ...+.+|+.+.|.|.+.+ +.+.+.|+|+|..+...   ......++.|.+    ..++.+|+|.|+|.|.|... 
T Consensus       104 ~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~---~~~~~~~~~L~I----~~v~~~d~G~Y~C~a~n~~~~  174 (188)
T 1oll_A          104 VHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQ---RGYGKVQAEFPL----GPVTTAHRGTYRCFGSYNNHA  174 (188)
T ss_dssp             EES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEE---EEECSSEEEEEE----EECCGGGCEEEEEECEEETTE
T ss_pred             ECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCcccccc---ccCCCceeEEEE----CCCCcCCCcEEEEEEEcCCCc
Confidence            655 456889999999999876 45799999998766531   111122345554    44599999999999998752 


Q ss_pred             -ceeEEEEEEEEcc
Q psy18191        215 -FARSKNATLDVAG  227 (238)
Q Consensus       215 -~~~s~~~~L~V~~  227 (238)
                       +..|..+.|.|.+
T Consensus       175 ~s~~S~~~~l~V~g  188 (188)
T 1oll_A          175 WSFPSEPVKLLVTG  188 (188)
T ss_dssp             ECCCCCCEEEEEEC
T ss_pred             CCCCCCcEEEEecC
Confidence             3345678888753

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.64  E-value=2.3e-15  Score=129.21  Aligned_cols=163  Identities=13%  Similarity=0.065  Sum_probs=105.4

Q ss_pred             CCCccEEEecccccccc--------ceEEEEEcCCCCCCCCCceEEEeCCCc----------------------------
Q psy18191         61 YPKPICLRFQDLLPQSK--------QGLMYLVGSQASPDYPNRFSLCNNKTW----------------------------  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~--------~g~~~l~~~~~~~~~~g~y~~~~~~~~----------------------------  104 (238)
                      .|.+.+.|++++..+..        .+...|.+.++..+|+|.|+|.+.+..                            
T Consensus        75 ~P~p~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~p~~~~~~  154 (423)
T 3qs7_E           75 PGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKME  154 (423)
T ss_dssp             CSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-----CEEEEEEEECS
T ss_pred             CCCCeEEEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecCccccccCCcEeccC
Confidence            56788999998753221        123468889999999999998654321                            


Q ss_pred             -----------------------------------------------ccCCceEEeCCCCcceec-ceecCCccCCEEEe
Q psy18191        105 -----------------------------------------------QKGLPLKKYHPPSLPLFP-GVHGDGYRVPRITE  136 (238)
Q Consensus       105 -----------------------------------------------~~G~y~c~~~~~~~~~~~-~~~~~v~~~P~i~~  136 (238)
                                                                     +.|.|.|.+.+....... ...+.+..+|.+  
T Consensus       155 ~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--  232 (423)
T 3qs7_E          155 NQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--  232 (423)
T ss_dssp             SSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCS--
T ss_pred             CceEEEEEEeeecCCeEEEEECCCCCccccccccccccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEecCCcc--
Confidence                                                           134467766655443322 123334444443  


Q ss_pred             CCCceEEeCCCcEEEEEEEee-eCCCEEEEEeCCEEeeccCCccEEEecCCc---EEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        137 HPASAVVPRHEPTTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRILLPAGS---LFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~---l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      .+....+.+|+.+.|.|.+.| .|.|.+.|+++|..+.............+.   ....+.|..+..+|+|.|+|.|.|.
T Consensus       233 ~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~  312 (423)
T 3qs7_E          233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH  312 (423)
T ss_dssp             STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE
T ss_pred             CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC
Confidence            345678899999999999998 677999999999877542000001111110   0112337788999999999999998


Q ss_pred             CCceeEEEEEEEEccCC
Q psy18191        213 LGFARSKNATLDVAGKI  229 (238)
Q Consensus       213 ~G~~~s~~~~L~V~~~~  229 (238)
                         . +..+.|.|..++
T Consensus       313 ---~-~~~~~L~V~~~p  325 (423)
T 3qs7_E          313 ---P-SQSALVTIVEKG  325 (423)
T ss_dssp             ---E-EEEEEEEEESSC
T ss_pred             ---C-CceEEEEEEeCC
Confidence               4 358889887654

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.64  E-value=7.6e-15  Score=99.78  Aligned_cols=91  Identities=23%  Similarity=0.356  Sum_probs=71.4

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeee-CCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGY-PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~-P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      +...+.+..+.+|+++.|.|.+.|. |.|.+.|++++..+... ....+...++...+  .|..+..+|+|.|+|.|.|.
T Consensus         4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~L--~i~~v~~~D~G~Y~C~a~n~   80 (97)
T 2bk8_A            4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENS-EKYEITYEDGVAIL--YVKDITKLDDGTYRCKVVND   80 (97)
T ss_dssp             EECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSS-SSEEEEEETTEEEE--EECSCCGGGCEEEEEEEECS
T ss_pred             eeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCC-CCEEEEEcCCeEEE--EEecCChhhCeEEEEEEECC
Confidence            4455678899999999999999997 99999999999988753 22223234442222  26778999999999999999


Q ss_pred             CCceeEEEEEEEEccC
Q psy18191        213 LGFARSKNATLDVAGK  228 (238)
Q Consensus       213 ~G~~~s~~~~L~V~~~  228 (238)
                      .|...+ .+.|.|.+.
T Consensus        81 ~g~~~~-~~~l~V~~~   95 (97)
T 2bk8_A           81 YGEDSS-YAELFVKGV   95 (97)
T ss_dssp             SCEEEE-EEEEEETTT
T ss_pred             CCeEeE-EEEEEEEec
Confidence            999974 999999754

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.64  E-value=3.2e-15  Score=120.94  Aligned_cols=157  Identities=13%  Similarity=0.020  Sum_probs=95.4

Q ss_pred             ccEEEeccc-cccccce-E-----EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEe
Q psy18191         64 PICLRFQDL-LPQSKQG-L-----MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITE  136 (238)
Q Consensus        64 ~~~~w~~~~-~~~~~~g-~-----~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~  136 (238)
                      +.+.|++++ ....... .     ..|.+.++...|+|.|+|.+.+..  |...     .....+. +......+|.+..
T Consensus       120 ~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~--~~~~-----s~~~~l~-V~~~~~~~p~i~~  191 (292)
T 4dkd_C          120 AGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGG--RKVM-----SISIRLK-VQKVIPGPPALTL  191 (292)
T ss_dssp             SSEEEEEGGGCCCCSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTT--SCEE-----CCCEEEE-EECCCCSSCEEEE
T ss_pred             eeEEEEecCCCccccCCcccccCCceEEECCCCHHHCeEEEEEEEeCC--Ccee-----EEEEEEE-EeCCCCCCCeEEc
Confidence            678888863 3332221 1     125666777778888887666421  1100     0011111 1111223889988


Q ss_pred             CCCceEEeCCCcEEEEEEEeeeCC-CEEEEEeCCEEeeccCCccEEEecCCc--EEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191        137 HPASAVVPRHEPTTLNCKADGYPE-PRIEWYKDGSLVSAEIGSHRILLPAGS--LFFLSLVHGKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~--l~~~~vi~~v~~~d~G~Y~C~a~N~~  213 (238)
                      .+....+.+|+.+.|.|.+.|.|+ +.+.|++++..+...   .......+.  ....+.|..+..+|+|.|+|.|.|..
T Consensus       192 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  268 (292)
T 4dkd_C          192 VPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIP---QQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQ  268 (292)
T ss_dssp             ESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCC---BEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSS
T ss_pred             cCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccC---ccceeccceeeeEEEEEECccChhcCeEEEEEEecCC
Confidence            888777789999999999998775 568889988766532   111111221  11123377889999999999999999


Q ss_pred             CceeEEEEEEEEccCCCCC
Q psy18191        214 GFARSKNATLDVAGKISTA  232 (238)
Q Consensus       214 G~~~s~~~~L~V~~~~~~~  232 (238)
                      |... ..+.|.|.......
T Consensus       269 g~~~-~~~~l~V~~~~~~~  286 (292)
T 4dkd_C          269 GKHS-TSMFFRVVESAGNS  286 (292)
T ss_dssp             CEEE-EEEEECC-------
T ss_pred             CCce-eEEEEEEeeCCCcc
Confidence            9986 59999998766543

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.64  E-value=1.4e-15  Score=117.23  Aligned_cols=85  Identities=11%  Similarity=0.121  Sum_probs=61.2

Q ss_pred             CCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecC-CcEEEEEeecCCCCCCCeEEEEEEEeCCCc
Q psy18191        137 HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPA-GSLFFLSLVHGKKDTDSGVYWCVARNELGF  215 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~-~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~  215 (238)
                      .+....+..|+.+.|.|.+.|.|.|.++|++++..+...   ......+ ......+.|..+..+|.|.|+|.|.|..|.
T Consensus       124 ~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~  200 (218)
T 4frw_A          124 PGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSS---RSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLL  200 (218)
T ss_dssp             ECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEE---EEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCS
T ss_pred             eeeeeeeeeccccceeeeccCCcCceEEEEECCcccccC---ceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCC
Confidence            345566778999999999999999999999999877642   1121111 111222346777999999999999999998


Q ss_pred             eeEEEEEEEE
Q psy18191        216 ARSKNATLDV  225 (238)
Q Consensus       216 ~~s~~~~L~V  225 (238)
                      .. ..+.|.|
T Consensus       201 ~~-~~~t~~v  209 (218)
T 4frw_A          201 QD-QRITHIL  209 (218)
T ss_dssp             SC-EEEEEEC
T ss_pred             eE-EEEEEEE
Confidence            75 3555554

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.64  E-value=8e-16  Score=121.77  Aligned_cols=131  Identities=15%  Similarity=0.136  Sum_probs=79.6

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCcc---CCEEEe-CCCceEEeCCCcEEEEEEEee
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYR---VPRITE-HPASAVVPRHEPTTLNCKADG  157 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~---~P~i~~-~~~~~~~~~G~~~~L~C~~~g  157 (238)
                      .|.+.++..+|+|.|+|.+.+......+-.        ....+.+.+..   +|.+.. .+....+.+|+.+.|.|.+.|
T Consensus        91 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~--------~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g  162 (250)
T 2fbo_J           91 TLRLTHVHPQDGGRYWCQVAQWSIRTEFGL--------DAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTD  162 (250)
T ss_dssp             CEEECSCCGGGCEEEEEEEECTTCCSGGGE--------EEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEES
T ss_pred             eEEEeeCChhhCeEEEEEeccCccCCcccc--------cceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecC
Confidence            567778888888888876665322111000        00011111222   344433 345577788999999999999


Q ss_pred             eCCCEEEEEeCCEEeeccCCc---------------------cEEE-ecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCc
Q psy18191        158 YPEPRIEWYKDGSLVSAEIGS---------------------HRIL-LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGF  215 (238)
Q Consensus       158 ~P~p~i~W~~~g~~l~~~~~~---------------------~~~~-~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~  215 (238)
                      .|.|.+.|++++..+......                     .... ...+.|.    |..+..+|+|.|+|.|.|.+|.
T Consensus       163 ~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~----i~~v~~~D~G~Y~C~a~N~~g~  238 (250)
T 2fbo_J          163 CANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLV----IRAAKITDAGRVWCELATGQGE  238 (250)
T ss_dssp             CTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEE----ECSCCGGGCEEEEEEEESSSSG
T ss_pred             CCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEE----EecCCcccCEEEEEEecCCccc
Confidence            999999999998876532100                     1111 1224444    6677999999999999996654


Q ss_pred             eeE--EEEEEE
Q psy18191        216 ARS--KNATLD  224 (238)
Q Consensus       216 ~~s--~~~~L~  224 (238)
                      ..+  ..+.|.
T Consensus       239 ~g~~~~~~~l~  249 (250)
T 2fbo_J          239 LDADRSSTILK  249 (250)
T ss_dssp             GGEEEEEEEEE
T ss_pred             cCccceeEEEe
Confidence            422  344444

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.64  E-value=4.1e-15  Score=115.73  Aligned_cols=134  Identities=16%  Similarity=0.246  Sum_probs=79.9

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEE-eeeCC
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKA-DGYPE  160 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~-~g~P~  160 (238)
                      .|.+.++..+|+|.|+|...+... +        .....+.  ......+|.+...+ ...+.+|+.+.|.|.+ .|.|.
T Consensus        73 sL~I~~v~~~D~G~Y~C~~~~~~~-~--------~~~~~l~--V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~  140 (222)
T 4i0k_A           73 SLRLQRVRVTDEGSYTCFVSIQDF-D--------SAAVSLQ--VAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPE  140 (222)
T ss_dssp             CEEECSCCGGGCSCEEEEEEECCC-C--------CCCCCCC--CCBCCCCCEEECCC------CCSEEEEEEEEEEEBSC
T ss_pred             EEEECCcccccCEEEEEEEEeCCC-c--------eEEEEEE--EEcCCCCCcEEeCC-CceecCCceEEEEEecccccCC
Confidence            366677777777777766543210 0        0111111  01112346776554 3467889999999999 89999


Q ss_pred             CEEEEEe-CCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        161 PRIEWYK-DGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       161 p~i~W~~-~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      |.+.|++ ++..+............++...++ .|..+..+|.|.|+|.|.|..|... ..+.|.|.++|
T Consensus       141 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l-~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~p  208 (222)
T 4i0k_A          141 AEVFWKDGQGVPLTGNVTTSQMANERGLFDVH-SVLRVVLGANGTYSCLVRNPVLQQD-AHGSVTITGQP  208 (222)
T ss_dssp             CEEEEECTTSCBCCSEEEEEEEECTTSCEEEE-EEEEEECCTTCEEEEEEEETTTTEE-EEEEEECCC--
T ss_pred             CeEEEEcCCCccCCCCcceeEEcCCCCeEEEE-EEEEEEeCCCCEEEEEEECCCCCCc-eEEEEEEeCCc
Confidence            9999999 555443210111112234442222 1344489999999999999999996 59999998765

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.64  E-value=3.2e-15  Score=134.21  Aligned_cols=153  Identities=16%  Similarity=0.179  Sum_probs=104.8

Q ss_pred             CCCccEEEeccccccccceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPAS  140 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~  140 (238)
                      .|.+.+.|++++..+....  .|.+.++...|+|.|+|.+.+......  .    ..  .+.........+|.+.. +..
T Consensus       408 ~p~~~i~W~~~g~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~--~----s~--~~~v~v~~~~~~p~i~~-~~~  476 (642)
T 1e07_A          408 NPPAQYSWLIDGNIQQHTQ--ELFISNITEKNSGLYTCQANNSASGHS--R----TT--VKTITVSAELPKPSISS-NNS  476 (642)
T ss_pred             cCCCeEEEEECCEEcCCCc--eEEEccCChhhCeEEEEEEEcCCCCCc--c----cc--eEEEEEeccCCCceEec-CCc
Confidence            4577899999988665432  467788899999999988877532111  0    01  11111111224566654 345


Q ss_pred             eEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEE
Q psy18191        141 AVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKN  220 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~  220 (238)
                      ..+.+|+.+.|.|.+.+ |.|.+.|+++|..+... ....+...++.|.+    ..+..+|+|.|+|.|.|..|...+..
T Consensus       477 ~~v~~g~~v~l~C~~~~-~~~~i~W~~~g~~l~~~-~~~~~~~~~~~L~i----~~v~~~d~G~Y~C~a~n~~g~~~s~~  550 (642)
T 1e07_A          477 KPVEDKDAVAFTCEPEA-QNTTYLWWVNGQSLPVS-PRLQLSNGNRTLTL----FNVTRNDARAYVCGIQNSVSANRSDP  550 (642)
T ss_pred             eeecCCCeEEEEEECCC-CCcEEEEEECCEeCCCC-CcEEEcCCCcEEEE----eecChhcCceEEEEeEcCCCCccCCC
Confidence            77889999999999985 88999999999988743 11122222445554    45599999999999999999876557


Q ss_pred             EEEEEccCCC
Q psy18191        221 ATLDVAGKIS  230 (238)
Q Consensus       221 ~~L~V~~~~~  230 (238)
                      +.|.|...|.
T Consensus       551 ~~l~V~~~p~  560 (642)
T 1e07_A          551 VTLDVLYGPD  560 (642)
T ss_pred             EEEEEEeCCC
Confidence            8899876554

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.63  E-value=2.7e-14  Score=125.22  Aligned_cols=156  Identities=17%  Similarity=0.133  Sum_probs=102.6

Q ss_pred             CccEEEec-cccccccce-E-----EEEEcCCCCCCCCC-ceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEE
Q psy18191         63 KPICLRFQ-DLLPQSKQG-L-----MYLVGSQASPDYPN-RFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRI  134 (238)
Q Consensus        63 ~~~~~w~~-~~~~~~~~g-~-----~~l~~~~~~~~~~g-~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i  134 (238)
                      .+.+.||+ ++..+.... +     ..|.+.++..+|+| .|+|.+.+..  |...     .....+. +......+|.+
T Consensus       143 ~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~--~~~~-----s~~~~l~-V~~~~~~~p~i  214 (524)
T 2ec8_A          143 VTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEG--KSVL-----SEKFILK-VRPAFKAVPVV  214 (524)
T ss_dssp             CSCEEEECSSSCCCCSSCEEEEETTTEEEEESCCGGGTTCEEEEEEC------CCC-----CCCEECC-EECCCCSCCEE
T ss_pred             cceEEEEccCCcCcCCCCceeECCCccEEEeccchhhCCceEEEEEEECC--ceEE-----EEEEEEE-EEeCCCCCCcE
Confidence            47899988 666554322 1     14566778888888 8887766531  1110     0011111 11112478999


Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCE-EEEEeCCEEe--eccCCccEEEec-C--CcEEEEEeecCCCCCCCeEEEEE
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPR-IEWYKDGSLV--SAEIGSHRILLP-A--GSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~-i~W~~~g~~l--~~~~~~~~~~~~-~--~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      ...+....+.+|+.+.|.|.+.|.|.|. +.|++++..+  ...   ...... +  ........|..+..+|+|.|+|.
T Consensus       215 ~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~  291 (524)
T 2ec8_A          215 SVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEK---YNSWHHGDFNYERQATLTISSARVNDSGVFMCY  291 (524)
T ss_dssp             ECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEE---EEEEECSSSCEEEEEEEEESSCCTTTCEEEEEE
T ss_pred             EecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccc---cccccccCCccceEEEEEECCCCHHHCEEEEEE
Confidence            8888888999999999999999999987 9999999873  221   111111 1  01112223777899999999999


Q ss_pred             EEeCCCceeEEEEEEEEccCCC
Q psy18191        209 ARNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      |.|..|...+ .+.|.|..++.
T Consensus       292 a~n~~g~~~~-~~~l~V~~~p~  312 (524)
T 2ec8_A          292 ANNTFGSANV-TTTLEVVDKGF  312 (524)
T ss_dssp             EECSSCEEEE-EEEEEEESSCE
T ss_pred             EEecCCceEE-EEEEEEeccCc
Confidence            9999999974 99999976643

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.63  E-value=5.3e-15  Score=119.58  Aligned_cols=151  Identities=14%  Similarity=0.122  Sum_probs=103.1

Q ss_pred             cEEEec-cccccccce---------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEE
Q psy18191         65 ICLRFQ-DLLPQSKQG---------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRI  134 (238)
Q Consensus        65 ~~~w~~-~~~~~~~~g---------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i  134 (238)
                      .+.|++ ++..+....         ...|.+.++..+|+|.|+|.+.+..  |...          ...+.+.+..+|.+
T Consensus        34 ~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~--g~~~----------~~~~~l~v~~~~~~  101 (291)
T 2wim_A           34 SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAK--GQTQ----------EATVVLEIYQKLTF  101 (291)
T ss_dssp             EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSS--SCEE----------EEEEEEEEECCCBC
T ss_pred             ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEeccc--CceE----------EEEEEEEecCCcce
Confidence            689999 555443211         2468888999999999998776632  2111          11112224456777


Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      ...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+............++.|.    |..+..+|+|.|+|.|.|..+
T Consensus       102 ~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~----i~~v~~~d~G~Y~C~~~n~~~  177 (291)
T 2wim_A          102 REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ----ILNINKSDEGIYRCEGRVEAR  177 (291)
T ss_dssp             CSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEE----ETTCCGGGCEEEEEEEEETTT
T ss_pred             EeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEE----EEecchhhCEEEEEEEEECCC
Confidence            6667778899999999999999999999999999988765333444445566665    566699999999999999985


Q ss_pred             c-eeEEEEEEEEccCCCC
Q psy18191        215 F-ARSKNATLDVAGKIST  231 (238)
Q Consensus       215 ~-~~s~~~~L~V~~~~~~  231 (238)
                      . ..+..+.|.|..++..
T Consensus       178 ~~~~~~~~~~~v~~~p~~  195 (291)
T 2wim_A          178 GEIDFRDIIVIVNVPPAI  195 (291)
T ss_dssp             TEEEEEEEEEEEEBCCCC
T ss_pred             CeeEEeeEEEEeccCCcc
Confidence            4 3334667777666543

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.63  E-value=1.9e-15  Score=117.53  Aligned_cols=132  Identities=14%  Similarity=0.154  Sum_probs=81.8

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCC
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPE  160 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~  160 (238)
                      ..|.+.++..+|+|.|+|.+.+   .|.....           +.+.+..+|..........+.+|+.+.|.|.+.|.|.
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~---~~~~~~~-----------~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~  145 (222)
T 3sbw_C           80 AALQITDVKLQDAGVYRCMISY---GGADYKR-----------ITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPK  145 (222)
T ss_dssp             EEEEESSCCGGGCEEEEEEEES---SSEEEEE-----------EEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSC
T ss_pred             EEEEEcCcccccCeEEEEEEEe---CCCceeE-----------EEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCC
Confidence            4688889999999999977665   1211111           1111223332211111125678999999999999999


Q ss_pred             CEEEEEeC-CEEeeccCCccEE-EecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        161 PRIEWYKD-GSLVSAEIGSHRI-LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       161 p~i~W~~~-g~~l~~~~~~~~~-~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      |.+.|+++ +..+... ..... ...++.+.+... -.+...|.|.|+|.|.|..|... ..+.|.|.+.+
T Consensus       146 p~i~W~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~-l~v~~~d~g~Y~C~a~n~~g~~~-~~~~l~v~~~p  213 (222)
T 3sbw_C          146 AEVIWTSSDHQVLSGK-TTTTNSKREEKLFNVTST-LRINTTTNEIFYCTFRRLDPEEN-HTAELVIPELP  213 (222)
T ss_dssp             CEEEEEETTCCEECCE-EEEEECC----CEEEEEE-EEEECCTTCEEEEEEEETTTTEE-EEEEEECCCC-
T ss_pred             CeEEEEECCCceecCc-cceEEEcCCCCCEEEEEE-EEEeccCCcEEEEEEEeCcccee-eEEEEEecCCc
Confidence            99999998 6555421 11111 122343333321 12267899999999999999996 59999987654

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.63  E-value=1.3e-15  Score=115.14  Aligned_cols=134  Identities=11%  Similarity=0.016  Sum_probs=83.3

Q ss_pred             CCCccEEEeccccccc----------cce-E-----EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecce
Q psy18191         61 YPKPICLRFQDLLPQS----------KQG-L-----MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGV  124 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~----------~~g-~-----~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~  124 (238)
                      .+.+.+.|++++..+.          ..+ +     ..|.|.++..+|+|.|+|.+.+..  |.....    ....+. +
T Consensus        25 ~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~--g~~~~~----~~~~l~-V   97 (176)
T 1hng_A           25 DDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTN--GTRILN----KALDLR-I   97 (176)
T ss_dssp             TTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETT--CCEEEE----EEEEEE-E
T ss_pred             cccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCC--CCEEEE----EEEEEE-E
Confidence            3466899999874221          011 1     136777888888888887665532  211000    000111 1


Q ss_pred             ecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeE
Q psy18191        125 HGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       125 ~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~  204 (238)
                      .. ...+|.+.        ..+..+.|.|.+.|.|.|.+.|+++|..+...          ..+.+..+    ..+|+|.
T Consensus        98 ~~-~~~~p~i~--------~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~----------~~~~i~~~----~~~d~G~  154 (176)
T 1hng_A           98 LE-MVSKPMIY--------WECSNATLTCEVLEGTDVELKLYQGKEHLRSL----------RQKTMSYQ----WTNLRAP  154 (176)
T ss_dssp             EC-CCCCCEEE--------EETTTTEEEEECSSCSSCEEEEEETTEEEEEE----------SSSEEEEE----CSCCSSC
T ss_pred             eC-CCCCCEEE--------ecCCcEEEEEEecCCCCcEEEEEECCEECCCC----------CcEEEEEE----EccCCeE
Confidence            10 11223333        23456999999999999999999999888642          11333344    8999999


Q ss_pred             EEEEEEeCCCceeEEEEEEEE
Q psy18191        205 YWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       205 Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      |+|.|.|.+|...+ .+.|.+
T Consensus       155 Y~C~a~N~~g~~~~-~~~l~~  174 (176)
T 1hng_A          155 FKCKAVNRVSQESE-MEVVNC  174 (176)
T ss_dssp             EEEEEEETTEEEEE-EECCCC
T ss_pred             EEEEEEecCCCcee-cccccC
Confidence            99999999999964 666654

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.63  E-value=4e-15  Score=125.68  Aligned_cols=159  Identities=23%  Similarity=0.373  Sum_probs=99.9

Q ss_pred             CCCccEEEecccc-ccccce-E-----EEEEcCCCCCCC-CCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCC
Q psy18191         61 YPKPICLRFQDLL-PQSKQG-L-----MYLVGSQASPDY-PNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVP  132 (238)
Q Consensus        61 ~~~~~~~w~~~~~-~~~~~g-~-----~~l~~~~~~~~~-~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P  132 (238)
                      .+.+.+.|++++. ...... .     ..|.+.++...| +|.|+|.+.+...  ..........+ .+.........+|
T Consensus       144 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~--~~~~~~~~~~l-~v~~~~~~~~~~p  220 (404)
T 3p3y_A          144 LPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFT--HTIQQKNPFTL-KVLTTRGVAERTP  220 (404)
T ss_dssp             SSCCEEEEECTTSCBCCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTT--CCEEECCCBCE-EEECCSCCCCCCC
T ss_pred             CCCCeEEEeCCCccccCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccc--cceeccCceeE-EEeccCCccccCC
Confidence            4567888998764 322211 1     135556777777 4788876655322  11111100000 1100001122344


Q ss_pred             EEEeCC---CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        133 RITEHP---ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       133 ~i~~~~---~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .+...+   ....+.+|+.+.|.|.+.|.|.|.+.|+++|..+...  .......++.|.    |..+..+|+|.|+|.|
T Consensus       221 ~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~--~~~~~~~~~~L~----i~~~~~~d~G~Y~C~a  294 (404)
T 3p3y_A          221 SFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSD--KAKFENFNKALR----ITNVSEEDSGEYFCLA  294 (404)
T ss_dssp             CBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTT--TEEEEGGGTEEE----ESSCCGGGCEEEEEEE
T ss_pred             ccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCC--cccccccCceEE----EccCCHhHCEEEEEEE
Confidence            443322   2466889999999999999999999999999887642  233334455555    5666999999999999


Q ss_pred             EeCCCceeEEEEEEEEccCC
Q psy18191        210 RNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V~~~~  229 (238)
                      .|..|... ..+.|.|..++
T Consensus       295 ~n~~g~~~-~~~~l~V~~~p  313 (404)
T 3p3y_A          295 SNKMGSIR-HTISVRVKAAP  313 (404)
T ss_dssp             ECSSCEEE-EEEEEEEEEEE
T ss_pred             EeCCCcEE-EEEEEEEeCCC
Confidence            99999986 58999987654

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=1.5e-15  Score=104.21  Aligned_cols=93  Identities=16%  Similarity=0.157  Sum_probs=72.9

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .+|.|...+.++.+.+|+++.|.|.+  .|.|.+.|+|+|..+..+  .+.....++.... +.|..+..+|+|.|+|.|
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~--~r~~i~~~~~~~~-L~I~~v~~~D~G~Y~C~a   80 (100)
T 2yuz_A            6 SGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQES--DRLKVVQKGRIHK-LVIANALTEDEGDYVFAP   80 (100)
T ss_dssp             CCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCC--SSEEEEECSSEEE-EEESSCCGGGCSEEEEEE
T ss_pred             CCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCC--CcEEEEEeCCEEE-EEECCCChhhCEEEEEEE
Confidence            46788888889999999999999999  899999999999998753  2322333443322 237888999999999999


Q ss_pred             EeCCCceeEEEEEEEEccCCC
Q psy18191        210 RNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      .|.  ... ..+.|.|..+|.
T Consensus        81 ~N~--~~~-~~a~L~V~~~P~   98 (100)
T 2yuz_A           81 DAY--NVT-LPAKVHVISGPS   98 (100)
T ss_dssp             SSS--CCC-EEEEEEEECCSC
T ss_pred             cCC--Cee-EEEEEEEeCCCC
Confidence            998  443 488999988765

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.62  E-value=9.4e-16  Score=106.37  Aligned_cols=94  Identities=24%  Similarity=0.412  Sum_probs=74.7

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      ..+|.|...|.++.+.+|+++.|.|.+.|.|.|.+.|+++|..+... ....+....+...  +.|..+..+|+|.|+|.
T Consensus        12 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~-~~~~~~~~~~~~~--L~I~~v~~~D~G~Y~C~   88 (106)
T 1nct_A           12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTS-ARHQVTTTKYKST--FEISSVQASDEGNYSVV   88 (106)
T ss_dssp             SCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTC-SSEEEEECSSEEE--EEECCCCSSCCSEEEEC
T ss_pred             CCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCC-CCEEEEECCCEEE--EEECcCCchhCEEEEEE
Confidence            46788999999999999999999999999999999999999887642 2222222222222  23677799999999999


Q ss_pred             EEeCCCceeEEEEEEEEc
Q psy18191        209 ARNELGFARSKNATLDVA  226 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~  226 (238)
                      |.|..|... ..+.|.|.
T Consensus        89 a~N~~G~~~-~~~~l~V~  105 (106)
T 1nct_A           89 VENSEGKQE-AEFTLTIQ  105 (106)
T ss_dssp             CBCSSCBCC-EEEEEEEC
T ss_pred             EEeCCCeEE-EEEEEEEE
Confidence            999999986 59999885

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.62  E-value=2.7e-15  Score=119.36  Aligned_cols=143  Identities=14%  Similarity=0.149  Sum_probs=95.0

Q ss_pred             CCccEEEeccccccccce-EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCc
Q psy18191         62 PKPICLRFQDLLPQSKQG-LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPAS  140 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~g-~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~  140 (238)
                      +.+.+.|++++..+.... ...|.+..+...|+|.|+|.+.+...      .....  ..+.  ......+|.+...+ .
T Consensus       111 p~~~v~W~~~g~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~------~~~~~--~~l~--V~~~~~~p~~~~~~-~  179 (262)
T 3rjd_A          111 LVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHR------YTSAG--ISVT--VKELFPAPVLNASV-T  179 (262)
T ss_dssp             CCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEESSSE------EEEEC--EEEE--EECSSCCCEEEESS-C
T ss_pred             CCceEEEEECCccccccCCCCeEEEEECChhhCEEEEEEEeCCCC------ccccc--eEEE--eccCCCCCeEeecC-c
Confidence            456899999887654432 23567788888999999987766431      10000  0111  11112466776655 5


Q ss_pred             eEEeCCCcEEEEEEEeeeCC-CE----EEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCc
Q psy18191        141 AVVPRHEPTTLNCKADGYPE-PR----IEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGF  215 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~~g~P~-p~----i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~  215 (238)
                      ..+.+|+.+.|.|.+.|.|. |.    +.|++++..+...       .....|.    |..+..+|+|.|+|.|.|..|.
T Consensus       180 ~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~-------~~~~~L~----i~~v~~~d~G~Y~C~a~n~~G~  248 (262)
T 3rjd_A          180 SPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR-------NTSSEYQ----ILTARREDSGLYWCEAATEDGN  248 (262)
T ss_dssp             SSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE-------ESCCEEE----ESSCCGGGCEEEEEEEEETTSS
T ss_pred             eeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc-------CCCceEE----EEEechhhCeEEEEEEEcccCc
Confidence            66889999999999999886 54    7889999877632       1234444    5667999999999999999997


Q ss_pred             ee--EEEEEEEEc
Q psy18191        216 AR--SKNATLDVA  226 (238)
Q Consensus       216 ~~--s~~~~L~V~  226 (238)
                      ..  +..+.|.|+
T Consensus       249 ~~~~s~~~~l~V~  261 (262)
T 3rjd_A          249 VLKRSPELELQVL  261 (262)
T ss_dssp             CEEECCCEEECEE
T ss_pred             eEEecCCeEEEEe
Confidence            53  234555554

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.62  E-value=5.2e-16  Score=124.45  Aligned_cols=139  Identities=24%  Similarity=0.325  Sum_probs=92.7

Q ss_pred             CCccEEEeccccccccce-EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeC--C
Q psy18191         62 PKPICLRFQDLLPQSKQG-LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEH--P  138 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~g-~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~--~  138 (238)
                      +.+.+.|  ++.++...+ ...|.+.....+|+|.|+|.+.+.. .|.....        ...+.+.+..+|.+...  |
T Consensus       124 p~~~i~W--~g~~~~~~~~~~~l~i~~~~~~~~g~Y~C~a~n~~-~g~~~~~--------s~~~~l~V~~~p~~~~~~~p  192 (265)
T 2oz4_A          124 PRAKVTL--NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEV-AGQLIHK--------NQTRELRVLYGPRLDERDCP  192 (265)
T ss_dssp             TTSEEEE--SSCSSSCCSSEECCEEECCGGGTTEEEEEEEEEEC-SSSEEEE--------EEEEEEEEEEEEECCGGGSC
T ss_pred             CCCEEEE--CCEEccCCCCcEEEEEccccccCCceEEEEEEcCC-CCCcccc--------cccEEEEEEeCCccccccCC
Confidence            5677888  555543332 2344455666677777887664321 1211110        01122224566666443  4


Q ss_pred             CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeE
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARS  218 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s  218 (238)
                      .+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.          ..+.+.  .    ++.+|+|.|+|.|.|..|... 
T Consensus       193 ~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~----------~~g~~~--~----v~~~d~G~Y~C~a~N~~G~~~-  255 (265)
T 2oz4_A          193 GNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL----------PIGESV--T----VTRDLEGTYLCRARSTQGEVT-  255 (265)
T ss_dssp             SEEEEETTCEECCCCCCEEESCCEEEEEETTTEEC----------CTTSCE--E----CCGGGCEEEEEEEEETTEEEE-
T ss_pred             CccEEcCCCeEEEEeECccCCCCeEEEEECCcccC----------CCCcEE--E----eehhhCeEEEEEEECCCCcEE-
Confidence            56788999999999999999999999999987322          234432  2    388999999999999999996 


Q ss_pred             EEEEEEEccC
Q psy18191        219 KNATLDVAGK  228 (238)
Q Consensus       219 ~~~~L~V~~~  228 (238)
                      ..+.|.|..+
T Consensus       256 ~~~~l~V~~p  265 (265)
T 2oz4_A          256 REVTVNVLSP  265 (265)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEecC
Confidence            5999999753

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.62  E-value=7.6e-16  Score=104.54  Aligned_cols=88  Identities=20%  Similarity=0.321  Sum_probs=72.0

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      ..+|.|...+....+.+|+.+.|.|.+.|.| |.+.|+++|..+...   .++...++.|.    |..+..+|+|.|+|.
T Consensus         7 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~---~~~~~~~~~L~----i~~~~~~D~G~Y~C~   78 (95)
T 2ckn_A            7 AQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVES---NRTRITGEEVE----VRDSIPADSGLYACV   78 (95)
T ss_dssp             SCSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCC---SSEEECSSEEE----ESSCCGGGSEEEEEE
T ss_pred             CCCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCC---CCEEEeCCEEE----ECCCChHHCEEEEEE
Confidence            3567777778889999999999999999998 899999999888642   23334456665    566699999999999


Q ss_pred             EEeCCCceeEEEEEEEE
Q psy18191        209 ARNELGFARSKNATLDV  225 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V  225 (238)
                      |.|..|... ..+.|.|
T Consensus        79 a~n~~g~~~-~~~~l~V   94 (95)
T 2ckn_A           79 TSSPSGSDT-TYFSVNV   94 (95)
T ss_dssp             EEETTEEEE-EEEEEEE
T ss_pred             eccCCCcEE-EEEEEEE
Confidence            999999986 5888877

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.62  E-value=1.8e-15  Score=127.19  Aligned_cols=156  Identities=19%  Similarity=0.224  Sum_probs=102.4

Q ss_pred             CCCccEEEeccccccc--cce-------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecce-ecCCcc
Q psy18191         61 YPKPICLRFQDLLPQS--KQG-------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGV-HGDGYR  130 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~--~~g-------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~-~~~v~~  130 (238)
                      .+.+.+.|++++.+..  ..+       ...|.+.++...|+|.|+|.+.+....+  ...... ....+... ......
T Consensus       129 ~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~--~~~~~s-~~~~l~v~~~~~~~~  205 (382)
T 1cs6_A          129 YPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFI--TKSVFS-KFSQLSLAAEDARQY  205 (382)
T ss_dssp             ESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTE--EEEEEC-CCEEEEEESCCCCCE
T ss_pred             CCCcEEEEEECCCccccccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccc--cceeEc-cceeeccchhhcccC
Confidence            3567899999886432  111       1246677888888899987766532111  111100 00111100 011234


Q ss_pred             CCEEEeC-CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        131 VPRITEH-PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       131 ~P~i~~~-~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      +|.+... +....+.+|+.+.|.|.+.|.|.|.+.|++++..+..     ......+.|.    |..+..+|+|.|+|.|
T Consensus       206 ~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~-----~~~~~~~~L~----i~~~~~~d~G~Y~C~a  276 (382)
T 1cs6_A          206 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS-----KWLSSEPLLH----IQNVDFEDEGTYECEA  276 (382)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC-----CCSBSSSEEE----ECSCCGGGCEEEEEEE
T ss_pred             CCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCccccc-----EEecCCcEEE----EccCChhhCEEEEEEE
Confidence            6776654 5678899999999999999999999999998876542     1112234454    5666999999999999


Q ss_pred             EeCCCceeEEEEEEEEccCC
Q psy18191        210 RNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V~~~~  229 (238)
                      .|..|... ..+.|.|..+|
T Consensus       277 ~n~~g~~~-~~~~l~V~~~p  295 (382)
T 1cs6_A          277 ENIKGRDT-YQGRIIIHAQP  295 (382)
T ss_dssp             EETTEEEE-EEEEEEEEEEE
T ss_pred             EcCCCeEE-EEEEEEEecCC
Confidence            99999986 58889887654

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.62  E-value=5.1e-15  Score=122.13  Aligned_cols=96  Identities=18%  Similarity=0.244  Sum_probs=62.5

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC--EEEEEeCCEEeeccCCccEEEecCCcEEE--EEeecCCCCCCCe
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP--RIEWYKDGSLVSAEIGSHRILLPAGSLFF--LSLVHGKKDTDSG  203 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~l~~--~~vi~~v~~~d~G  203 (238)
                      +..+|.+...+..  +.+|+.+.|.|.+.|.|+|  .+.|+++|..+............++.+.+  .+.|..+..+|+|
T Consensus       219 v~~~P~i~~~~~~--~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G  296 (327)
T 2wng_A          219 IRVPPTLEVTQQP--VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDV  296 (327)
T ss_dssp             BCBCCEEEEEEEC--CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CC
T ss_pred             cCCCCEEEEecCC--cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCC
Confidence            5578888765443  6799999999999996544  79999999988753222223334454332  2235666889999


Q ss_pred             EEEEEEEeCCCceeEEEEEEEE
Q psy18191        204 VYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       204 ~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      .|+|.|.|..|...++.+.+.+
T Consensus       297 ~Y~C~a~N~~~~~~s~~~~~~~  318 (327)
T 2wng_A          297 KLTCQVEHDGQPAVSKSHDLKV  318 (327)
T ss_dssp             EEEEEEEETTCCCEEEEEECC-
T ss_pred             EEEEEEEeCCCCCchhheEEEe
Confidence            9999999999988665655544

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.62  E-value=2.8e-15  Score=100.85  Aligned_cols=86  Identities=23%  Similarity=0.384  Sum_probs=71.3

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .++.+...|....+.+|+.+.|.|.+.|.|.|.+.|++++..+...        ..+.|.    |..+..+|+|.|+|.|
T Consensus         2 ~~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~--------~~~~L~----i~~v~~~d~G~Y~C~a   69 (91)
T 3bfo_A            2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE--------TKKLYM----VPYVDLEHQGTYWCHV   69 (91)
T ss_dssp             CCCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTC--------CSSEEE----ESSCCGGGCEEEEEEE
T ss_pred             CceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcC--------CCCeEE----ECCCCHHhCEEEEEEE
Confidence            3577888888899999999999999999999999999999887643        123444    5667999999999999


Q ss_pred             EeCCCceeEEEEEEEEcc
Q psy18191        210 RNELGFARSKNATLDVAG  227 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V~~  227 (238)
                      .|..|...+..+.|.|.+
T Consensus        70 ~n~~g~~~s~~~~l~V~~   87 (91)
T 3bfo_A           70 YNDRDSQDSKKVEIIIDE   87 (91)
T ss_dssp             ECSSCEEECCCEEEEEC-
T ss_pred             EcCCCCEEeeeEEEEEeh
Confidence            999998766678888854

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.62  E-value=2.7e-15  Score=106.88  Aligned_cols=96  Identities=14%  Similarity=0.142  Sum_probs=68.6

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecC----C-cEEEEEeecCCCCCCCeE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPA----G-SLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~----~-~l~~~~vi~~v~~~d~G~  204 (238)
                      +||.| ....   ...+..+.|.|.+.|.|.|.|+|+|||..|..+ .........    + .....+.|..+...|+|.
T Consensus         3 ~pP~I-~l~~---~~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   77 (126)
T 1he7_A            3 MPASV-QLHT---AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNET-SFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN   77 (126)
T ss_dssp             CCCCC-CCCC---CCCCCEEEEEEEECCSSCCEEEEEETTEECCCC-SSEEEEEECCCSSCCCEEEEEEEESCCGGGCEE
T ss_pred             CCCEE-EccC---CccCccEEEEEEEeeeCCCeEEEEECCEECCCC-CceeEEEeeccccccccceEEEECcCCCCCCEE
Confidence            57776 2222   235678999999999999999999999999753 111111111    1 111222366779999999


Q ss_pred             EEEEEEeCCCceeEEEEEEEEccCCCC
Q psy18191        205 YWCVARNELGFARSKNATLDVAGKIST  231 (238)
Q Consensus       205 Y~C~a~N~~G~~~s~~~~L~V~~~~~~  231 (238)
                      |+|.|.|.+|... .++.|.|...|..
T Consensus        78 YtC~A~N~~G~~~-~t~~l~v~~~P~~  103 (126)
T 1he7_A           78 YTLLAANPFGQAS-ASIMAAFMDNPFE  103 (126)
T ss_dssp             EEEEEEETTEEEE-EEEEECCCSCTTS
T ss_pred             EEEEEEECCCeEE-EEEEEEEEcCCCC
Confidence            9999999999996 5999998876654

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.62  E-value=3.3e-16  Score=134.69  Aligned_cols=139  Identities=22%  Similarity=0.283  Sum_probs=87.8

Q ss_pred             CCccEEEeccccccccce-EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCC--
Q psy18191         62 PKPICLRFQDLLPQSKQG-LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHP--  138 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~g-~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~--  138 (238)
                      +.+.+.|  ++.++...+ ...|.+..+..+|+|.|+|.+.+.. .|....        ....+.+.+..+|.+...+  
T Consensus       309 p~p~i~W--~g~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~-~g~~~~--------~~~~~~l~V~~~P~~~~~~~p  377 (450)
T 1z7z_I          309 PRAKVTL--NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEV-AGQLIH--------KNQTRELRVLYGPRLDERDCP  377 (450)
T ss_dssp             -----------------CCCCCEEEECCGGGTTCEEEEEEEEEE-TTEEEE--------EEEEEECEEEEEEECCSTTSC
T ss_pred             CCCEeEE--CCEEcCCCCceEEEEEecCcccCCceEEEEEEcCC-CCcccc--------cceeEEEEEecCCceeeccCC
Confidence            4667788  555542222 2356677788888888887765421 121110        1112233355778776653  


Q ss_pred             CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeE
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARS  218 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s  218 (238)
                      .+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+..          .|.+.  .+    +.+|+|.|+|.|.|.+|... 
T Consensus       378 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~----------~g~~~--~v----~~~d~G~Y~C~a~N~~G~~~-  440 (450)
T 1z7z_I          378 GNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP----------IGESV--TV----TRDLEGTYLCRARSTQGEVT-  440 (450)
T ss_dssp             SEEEEETTCEECCCCCCEEESCCEEEEEETTTEECC----------TTSCE--EC----CGGGCEEEEEEEEETTEEEE-
T ss_pred             CceeEcCCCeEEEEEecccCCCCcEEEEECCcccCC----------CCCeE--eE----ehhhCeEEEEEEEeCCCcee-
Confidence            567899999999999999999999999999874432          23322  23    88999999999999999997 


Q ss_pred             EEEEEEEccC
Q psy18191        219 KNATLDVAGK  228 (238)
Q Consensus       219 ~~~~L~V~~~  228 (238)
                      ..+.|.|..+
T Consensus       441 ~~~~l~V~~~  450 (450)
T 1z7z_I          441 REVTVNVLSP  450 (450)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEEcC
Confidence            5999999753

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.62  E-value=6.5e-15  Score=99.71  Aligned_cols=89  Identities=18%  Similarity=0.200  Sum_probs=68.1

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .+|.|...+.++.+.+|+++.|.|.+.+ |.|.+.|+|+|..+..+ ....+ ..++.... +.|..+..+|+|.|+|.|
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~-~~~~i-~~~g~~~~-L~I~~v~~~D~G~Y~C~a   79 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAAS-PDCEI-IEDGKKHI-LILHNCQLGMTGEVSFQA   79 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCB-TTEEE-EEETTEEE-EEECSCCGGGCEEEEEEE
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCC-CCEEE-EEECCEEE-EEECCCChhhCEEEEEEE
Confidence            5788988899999999999999999976 55889999999998753 22233 23333222 237788999999999999


Q ss_pred             EeCCCceeEEEEEEEEcc
Q psy18191        210 RNELGFARSKNATLDVAG  227 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V~~  227 (238)
                      .|.    .+ ++.|.|.+
T Consensus        80 ~n~----~~-sa~L~V~~   92 (93)
T 1waa_A           80 ANT----KS-AANLKVKE   92 (93)
T ss_dssp             TTE----EE-EEEEEEEC
T ss_pred             CCC----cE-EEEEEEEc
Confidence            884    23 77888865

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.61  E-value=1.7e-16  Score=132.01  Aligned_cols=161  Identities=14%  Similarity=0.032  Sum_probs=75.0

Q ss_pred             CCCccEEEeccccccccc-eE----EEEEcCCCCCCCCCceEEEeCCCcccCCc-eEEeCCCCcceecceec-CCccCCE
Q psy18191         61 YPKPICLRFQDLLPQSKQ-GL----MYLVGSQASPDYPNRFSLCNNKTWQKGLP-LKKYHPPSLPLFPGVHG-DGYRVPR  133 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~-g~----~~l~~~~~~~~~~g~y~~~~~~~~~~G~y-~c~~~~~~~~~~~~~~~-~v~~~P~  133 (238)
                      .|.+.+.|++++.++... .+    ..|.+.++..+|+|.|+|.+.+... |.. ...    ....+..... ....+|.
T Consensus       152 ~p~~~v~W~k~~~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~-g~~~~~~----~~~~l~v~~~~~~~~~p~  226 (349)
T 4dep_C          152 SVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPEN-GRTFHLT----RTLTVKVVGSPKNAVPPV  226 (349)
T ss_dssp             TSCCEEEEEETTEECCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEET-TEEEEEE----EEEEEEEECCGGGCCSCE
T ss_pred             CCCceEEEeeCCEECCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeC-CEEEEEE----EEEEEEEEccCCCCCCCe
Confidence            567889999998865431 11    2577788889999999987766321 211 000    0111110000 0011677


Q ss_pred             EEeCCCce--EEeCCCcEEEEEEEe----eeCCCEEEEEeCCEEeeccCCccE----EE-ecCCcE--EEEEeecCCCCC
Q psy18191        134 ITEHPASA--VVPRHEPTTLNCKAD----GYPEPRIEWYKDGSLVSAEIGSHR----IL-LPAGSL--FFLSLVHGKKDT  200 (238)
Q Consensus       134 i~~~~~~~--~~~~G~~~~L~C~~~----g~P~p~i~W~~~g~~l~~~~~~~~----~~-~~~~~l--~~~~vi~~v~~~  200 (238)
                      +...+...  .+.+|+.+.|.|.+.    |.|.|.+.|+++|..+........    .. ...+..  ...+.|..+..+
T Consensus       227 i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  306 (349)
T 4dep_C          227 IHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSE  306 (349)
T ss_dssp             EC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC--------
T ss_pred             EecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHH
Confidence            76654432  788999999999998    578999999999988764111100    00 011111  111225666999


Q ss_pred             CC-eEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191        201 DS-GVYWCVARNELGFARSKNATLDVAG  227 (238)
Q Consensus       201 d~-G~Y~C~a~N~~G~~~s~~~~L~V~~  227 (238)
                      |+ |.|+|.|.|..|... ..+.|.|..
T Consensus       307 d~~G~Y~C~a~N~~G~~~-~~~~l~v~~  333 (349)
T 4dep_C          307 DLKRSYVCHARSAKGEVA-KAAKVKQKV  333 (349)
T ss_dssp             -----CEEEEECSSCEEE-EECC-----
T ss_pred             HcCCcEEEEEEcCCCcEE-EEEEEeeec
Confidence            99 999999999999997 588998865

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.61  E-value=4.4e-14  Score=130.11  Aligned_cols=155  Identities=18%  Similarity=0.285  Sum_probs=112.1

Q ss_pred             CCccEEEeccccccccceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCce
Q psy18191         62 PKPICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASA  141 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~  141 (238)
                      |.+.+.|++++..+.... ..|.+.++..+|+|.|+|.+.+..  |....    ..  .+.  ......+|.+...+...
T Consensus       371 p~~~v~W~k~g~~~~~~~-~~L~i~~v~~~d~G~Y~C~a~n~~--g~~~~----~~--~l~--v~~~~~~p~i~~~~~~~  439 (816)
T 3dmk_A          371 PIKTVSWMKDGKAIGHSE-SVLRIESVKKEDKGMYQCFVRNDR--ESAEA----SA--ELK--LGGRFDPPVIRQAFQEE  439 (816)
T ss_dssp             CCCEEEEEETTEECSCCS-SEEEESSCCGGGCEEEEEEEECSS--CEEEE----CC--EEE--CCCSSCCCEEEEECCCE
T ss_pred             CCCEEEEEECCEECCCCC-CEEEEcCCCHHHCEEEEEEEECCC--CcEEE----EE--EEE--EccccCCCceEecCcce
Confidence            467899999988665432 246788899999999998776642  21111    00  111  11124678888877888


Q ss_pred             EEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEE---EecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeE
Q psy18191        142 VVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI---LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARS  218 (238)
Q Consensus       142 ~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~---~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s  218 (238)
                      .+.+|+.+.|.|.+.|.|.|.+.|+++|..+... .....   ...++.......|..+..+|+|.|+|.|.|..|... 
T Consensus       440 ~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~-  517 (816)
T 3dmk_A          440 TMEPGPSVFLKCVAGGNPTPEISWELDGKKIANN-DRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAE-  517 (816)
T ss_dssp             EECSSSCEEEEEEEECSSCCEEEEEETTEECCSC-TTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEE-
T ss_pred             EEcCCCCEEEEEEEecCCCCEEEEEECCEECCCC-CCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEE-
Confidence            9999999999999999999999999999988653 11111   123444333344788899999999999999999986 


Q ss_pred             EEEEEEEccCC
Q psy18191        219 KNATLDVAGKI  229 (238)
Q Consensus       219 ~~~~L~V~~~~  229 (238)
                      ..+.|.|..++
T Consensus       518 ~~~~l~V~~~p  528 (816)
T 3dmk_A          518 HSAKLNVYGLP  528 (816)
T ss_dssp             EEEEEEECSSC
T ss_pred             EEEEEEEecCC
Confidence            59999998765

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.61  E-value=6.8e-15  Score=102.24  Aligned_cols=96  Identities=17%  Similarity=0.260  Sum_probs=69.3

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCC---CEEEEEeCCEEeeccCCccEEEec------CCcEEEEEeecCCCCC
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPE---PRIEWYKDGSLVSAEIGSHRILLP------AGSLFFLSLVHGKKDT  200 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~---p~i~W~~~g~~l~~~~~~~~~~~~------~~~l~~~~vi~~v~~~  200 (238)
                      ..|.|...|.++.+.+|+++.|.|.+.|.|.   |.+.|+|++..........++...      .......+.|..++.+
T Consensus         3 p~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (108)
T 3cx2_A            3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (108)
T ss_dssp             CCCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGG
T ss_pred             CccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCc
Confidence            3567777788899999999999999999998   999999987322211111111110      1111223347888999


Q ss_pred             CCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191        201 DSGVYWCVARNELGFARSKNATLDVA  226 (238)
Q Consensus       201 d~G~Y~C~a~N~~G~~~s~~~~L~V~  226 (238)
                      |+|.|.|.|.|..|... ..+.|.|.
T Consensus        83 D~G~Y~C~a~N~~G~~~-~~~~L~V~  107 (108)
T 3cx2_A           83 FTGSYRCEVSTKDKFDC-SNFNLTVH  107 (108)
T ss_dssp             GCEEEEEEEECSSCEEE-EEEEEEEE
T ss_pred             cCEEEEEEEecCCCceE-EEEEEEEe
Confidence            99999999999999996 59999985

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.61  E-value=2.1e-14  Score=125.83  Aligned_cols=151  Identities=13%  Similarity=0.107  Sum_probs=95.2

Q ss_pred             ccEEEeccccccccc-----------eE----EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCC
Q psy18191         64 PICLRFQDLLPQSKQ-----------GL----MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDG  128 (238)
Q Consensus        64 ~~~~w~~~~~~~~~~-----------g~----~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v  128 (238)
                      +.+.|++++.++...           +.    ..|.+..+..+|+|.|+|.+.+..  |......      ... ....+
T Consensus       146 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~--~~~~~~~------~~~-~~~~~  216 (523)
T 2rcj_C          146 VTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG--STVEKTV------APT-ECSAS  216 (523)
T ss_pred             eEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecC--cccccce------eee-ecCCC
Confidence            389999998755321           11    246777888888999998776642  2111110      000 11123


Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeee-CCC-EEEEEeCCEEeeccCCccEEEecCCcE--EEEEeecCCCCCCCeE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGY-PEP-RIEWYKDGSLVSAEIGSHRILLPAGSL--FFLSLVHGKKDTDSGV  204 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l--~~~~vi~~v~~~d~G~  204 (238)
                      ..+|.+...+....+.+|+.+.|.|.+.|. |.| .++|+++|..+..... ......++..  ...+.|..+..+| |.
T Consensus       217 ~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~-~~~~~~~g~~~~~s~L~i~~~~~~d-G~  294 (523)
T 2rcj_C          217 TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTF-PAVLQSSGLYSLSSVVTVPSSSLGT-QT  294 (523)
T ss_pred             CcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeC-CcEecCCCcEEEEEEEEechhhcCC-ce
Confidence            467777644444566899999999999887 878 8999999987543211 1122223321  1122356668899 99


Q ss_pred             EEEEEEeCCCceeEEEEEEEEc
Q psy18191        205 YWCVARNELGFARSKNATLDVA  226 (238)
Q Consensus       205 Y~C~a~N~~G~~~s~~~~L~V~  226 (238)
                      |+|.|.|..|... ..+.|.|.
T Consensus       295 Y~C~a~n~~g~~~-~~~~l~v~  315 (523)
T 2rcj_C          295 YICNVNHKPSNTK-VDKRVEPL  315 (523)
T ss_pred             EEEEEEeCCCCcc-eEEecCCC
Confidence            9999999999875 36666553

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.61  E-value=9.1e-15  Score=120.12  Aligned_cols=157  Identities=11%  Similarity=0.080  Sum_probs=89.1

Q ss_pred             CccEEEeccccccccc----------eEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCC
Q psy18191         63 KPICLRFQDLLPQSKQ----------GLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVP  132 (238)
Q Consensus        63 ~~~~~w~~~~~~~~~~----------g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P  132 (238)
                      .+.+.|++++......          ....|.+.++..+|+|.|+|.+.+....  .... .......+.  ......+|
T Consensus       146 ~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~--~~~s-~~s~~~~l~--V~~~~~~p  220 (316)
T 3vh8_G          146 FEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTP--YQLS-APSDPLDIV--VTGPYEKP  220 (316)
T ss_dssp             CSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCT--TBCC-CCCCCEEEE--EECSSCCC
T ss_pred             CcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCC--cccc-CCCCCEEEE--ecCCCCCC
Confidence            5678999988744221          1245778889999999999887764321  0000 001111111  11123567


Q ss_pred             EEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       133 ~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      .+...+.. .+.+|+.+.|.|.+. .|.+.+.|+++|..+...  ........+.......|..++  |+|.|+|.|.|.
T Consensus       221 ~i~~~~~~-~v~~G~~v~L~C~~~-~~~~~~~W~k~g~~~~~~--~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~  294 (316)
T 3vh8_G          221 SLSAQPGP-KVQAGESVTLSCSSR-SSYDMYHLSREGGAHERR--LPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFR  294 (316)
T ss_dssp             EEEEESCS-CCCTTSCCEEEEEES-SCCSEEEEEETTSSCCEE--EECEECTTSCEEEEEECC-------CEEEEEEEBT
T ss_pred             eEEeCCCC-eecCCCcEEEEEECC-CCCcEEEEEECCCcCCCc--eeceeccCCceeEEEEcCCcC--CCEEEEEEeecC
Confidence            77766543 568999999999997 477999999999766531  111112222221222355657  999999999998


Q ss_pred             CCc----eeEEEEEEEEccCCC
Q psy18191        213 LGF----ARSKNATLDVAGKIS  230 (238)
Q Consensus       213 ~G~----~~s~~~~L~V~~~~~  230 (238)
                      .+.    ..|..+.|.|.++|+
T Consensus       295 ~~~~~~s~~S~~~~l~V~g~p~  316 (316)
T 3vh8_G          295 HSPYEWSDPSDPLLVSVTGNPS  316 (316)
T ss_dssp             TBTTEECCCCCCEEC-------
T ss_pred             CCchhccCCCCcEEEEEeCCCC
Confidence            764    345688899987763

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.61  E-value=2.9e-15  Score=102.32  Aligned_cols=91  Identities=30%  Similarity=0.471  Sum_probs=70.2

Q ss_pred             cCCEEEeCC----CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCc--cEEEecCCcEEEEEeecCCCCCCCe
Q psy18191        130 RVPRITEHP----ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGS--HRILLPAGSLFFLSLVHGKKDTDSG  203 (238)
Q Consensus       130 ~~P~i~~~~----~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~--~~~~~~~~~l~~~~vi~~v~~~d~G  203 (238)
                      .+|.|...+    ..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+......  .......+.|.    |..+..+|+|
T Consensus         3 ~~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~----i~~v~~~D~G   78 (100)
T 3caf_A            3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI----MESVVPSDKG   78 (100)
T ss_dssp             EEEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEE----ECSCCGGGCE
T ss_pred             CCCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEE----EccCCcCCCE
Confidence            456666443    3577899999999999999999999999999988754221  12222334555    5666999999


Q ss_pred             EEEEEEEeCCCceeEEEEEEEE
Q psy18191        204 VYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       204 ~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      .|+|.|.|..|... ..+.|.|
T Consensus        79 ~Y~C~a~N~~g~~~-~~~~l~V   99 (100)
T 3caf_A           79 NYTCVVENEYGSIN-HTYHLDV   99 (100)
T ss_dssp             EEEEEEEETTEEEE-EEEEEEE
T ss_pred             EEEEEEEeCCCEEE-EEEEEEE
Confidence            99999999999986 5888887

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.60  E-value=7.9e-15  Score=112.91  Aligned_cols=149  Identities=13%  Similarity=0.093  Sum_probs=89.9

Q ss_pred             CccEEEecccccccc----------ceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCC
Q psy18191         63 KPICLRFQDLLPQSK----------QGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVP  132 (238)
Q Consensus        63 ~~~~~w~~~~~~~~~----------~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P  132 (238)
                      .+.+.|||++.....          .....|.+.++...|+|.|+|.+.+......   .........+.  ......+|
T Consensus        35 ~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~---~~~~s~~~~l~--V~~~~~~p  109 (201)
T 1nkr_A           35 FEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQ---VSAPSDPLDIV--IIGLYEKP  109 (201)
T ss_dssp             CSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTC---CCCCCCCEEEE--EECSSCCC
T ss_pred             CCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCcc---ccCCCCCEEEE--eeccCCCC
Confidence            467999999874421          1234577889999999999987643211000   00001111111  11123467


Q ss_pred             EEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEec---CCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLP---AGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       133 ~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~---~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .+...+. ..+.+|+.++|.|.+.+ |.+.+.|+|+|..+.... .......   .+.|.+    ..++  |+|.|+|.|
T Consensus       110 ~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~-~~~~~~~~~~~~~L~i----~~v~--d~G~Y~C~a  180 (201)
T 1nkr_A          110 SLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRL-PAGPKVNGTFQADFPL----GPAT--HGGTYRCFG  180 (201)
T ss_dssp             EEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEE-ECEEEETTEEEEEEEE----EECC--SCEEEEEEE
T ss_pred             ceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCccc-ccccccCCceEEEEEe----CCcC--CCeeEEEEE
Confidence            8876655 57899999999999986 568999999997665320 0111111   234444    4446  999999999


Q ss_pred             EeCC----CceeEEEEEEEE
Q psy18191        210 RNEL----GFARSKNATLDV  225 (238)
Q Consensus       210 ~N~~----G~~~s~~~~L~V  225 (238)
                      .+..    .+..|..+.|.|
T Consensus       181 ~~~~~~~~~s~~S~~~~l~V  200 (201)
T 1nkr_A          181 SFHDSPYEWSKSSDPLLVSV  200 (201)
T ss_dssp             EETTEEEEECCCCCCEEEEE
T ss_pred             EcCCCCCcCCCCCCCEEEEe
Confidence            9753    222344666665

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.60  E-value=1.3e-15  Score=126.12  Aligned_cols=151  Identities=13%  Similarity=0.013  Sum_probs=99.7

Q ss_pred             CCCccEEEeccccccccc----eEEEEEcCCCCCCCCC-ceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEE
Q psy18191         61 YPKPICLRFQDLLPQSKQ----GLMYLVGSQASPDYPN-RFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRIT  135 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~----g~~~l~~~~~~~~~~g-~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~  135 (238)
                      .+.+.+.||+++......    ....|.+..+..+|+| .|+|.+.+..  |.  +...    ... .+   +..+|.+.
T Consensus        65 ~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~--g~--~~~~----~~~-~v---~~~~p~~~  132 (329)
T 3oq3_B           65 DKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKN--GD--CVQG----IVR-SH---IRKPPSCI  132 (329)
T ss_dssp             CTTCEEEEEECSSSCEECSTTEETTEEEESSCCGGGGGCCEEEEEECTT--SC--EEEE----EEE-EE---ECCCCSCE
T ss_pred             CCCCeeEEEECCCCccccCceeecceEEEcCCChHhCCCcEEEEEEeCC--Cc--eeeE----EEE-EE---EcCCCcEe
Confidence            356789999998744321    1235677888999999 8998777642  21  1100    000 11   12344443


Q ss_pred             eCCCceEEeCCCcEEEEEEEeeeC-CCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC--
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGYP-EPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE--  212 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~P-~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~--  212 (238)
                      ..+....+.+|+.+.|.|.+.|.| .|.+.|++++..+...  ..++...++.|.    |..+..+|+|.|+|.|.|.  
T Consensus       133 ~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~--~~~~~~~~~~L~----I~~v~~~D~G~Y~C~a~n~~~  206 (329)
T 3oq3_B          133 PETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIID--GTKYSQSGQNLI----IHNPELEDSGRYDCYVHYDDV  206 (329)
T ss_dssp             EEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCS--SSSEEEETTEEE----ECSCCGGGCEEEEEEEEECCT
T ss_pred             ccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCC--CceEecCCCEEE----EeecChhhCEEEEEEEEeccc
Confidence            332233356799999999999999 9999999999988643  222223356665    5666999999999999997  


Q ss_pred             CCceeE---EEEEEEEccCC
Q psy18191        213 LGFARS---KNATLDVAGKI  229 (238)
Q Consensus       213 ~G~~~s---~~~~L~V~~~~  229 (238)
                      .|....   ..+.|.|..++
T Consensus       207 ~g~~~~~~s~~~~l~V~~~~  226 (329)
T 3oq3_B          207 RIKNDIVVSRCKILTVIPSQ  226 (329)
T ss_dssp             TSSSCEEEEEEEEEEEECCC
T ss_pred             CCCceeEEEeeEEEEEECCC
Confidence            655432   23778887665

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.60  E-value=8.7e-15  Score=112.31  Aligned_cols=150  Identities=15%  Similarity=0.210  Sum_probs=87.4

Q ss_pred             CCccEEEeccccccc--------------------cceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCccee
Q psy18191         62 PKPICLRFQDLLPQS--------------------KQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLF  121 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~--------------------~~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~  121 (238)
                      +.+.+.|++++..+.                    ..+...|.+.++..+|+|.|+|.+.+..  |.......   ...+
T Consensus        26 ~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~--g~~~~~~~---~~~~  100 (201)
T 1dr9_A           26 AQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYE--KDAFKREH---LAEV  100 (201)
T ss_dssp             HHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEEEEECC--TTSCEEEE---EEEE
T ss_pred             cccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEEEEEcCC--CCcccccc---ccEE
Confidence            567889999876431                    0111357777888888888887766532  11110000   0011


Q ss_pred             cceecCCccCCEEEeCCCceEEeCCCcEEEEEEE-eeeCCCEEEEEeCCEEeeccCCccEEEe-cCCcEEEEEeecCCCC
Q psy18191        122 PGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILL-PAGSLFFLSLVHGKKD  199 (238)
Q Consensus       122 ~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~l~~~~vi~~v~~  199 (238)
                      .........+|.+...    ....|+.+.|.|.+ .|.|.|.++|+++|..+...  ...... .++.+.....+..+..
T Consensus       101 ~l~V~~~~~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~--~~~~~~~~~~~~~~~~~~~~v~~  174 (201)
T 1dr9_A          101 TLSVKADFPTPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAI--NTTVSQDPETELYAVSSKLDFNM  174 (201)
T ss_dssp             EEEEECCCCCCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCS--EEEEEECTTTCCEEEEEEEEEET
T ss_pred             EEEEcCCCCCCceEec----cCCCCCeEEEEEecCCccCCCEEEEEECCEECccc--cceEEecCCCcEEEEEEEEEEEe
Confidence            1111101123544331    12458899999999 59999999999999888742  222222 2323322211222367


Q ss_pred             CCCeEEEEEEEeCCCceeEEEEEE
Q psy18191        200 TDSGVYWCVARNELGFARSKNATL  223 (238)
Q Consensus       200 ~d~G~Y~C~a~N~~G~~~s~~~~L  223 (238)
                      .|.|.|+|.|.|..|... ..+.+
T Consensus       175 ~d~g~Y~C~a~n~~~~~s-~~~~~  197 (201)
T 1dr9_A          175 TTNHSFMCLIKYGHLRVN-QTFNW  197 (201)
T ss_dssp             TSCEEEEEEEEETTCCEE-EEEEE
T ss_pred             cCCCEEEEEEecCcceee-eEEec
Confidence            899999999999999984 35543

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.59  E-value=1.5e-14  Score=103.08  Aligned_cols=101  Identities=22%  Similarity=0.260  Sum_probs=71.3

Q ss_pred             CEEEeCCCceEEeCCCcEEEEEEEeee---CCCEEEEEeCCEEeeccCCccEEEe----c--CCcEEEEEeecCCCCCCC
Q psy18191        132 PRITEHPASAVVPRHEPTTLNCKADGY---PEPRIEWYKDGSLVSAEIGSHRILL----P--AGSLFFLSLVHGKKDTDS  202 (238)
Q Consensus       132 P~i~~~~~~~~~~~G~~~~L~C~~~g~---P~p~i~W~~~g~~l~~~~~~~~~~~----~--~~~l~~~~vi~~v~~~d~  202 (238)
                      |.|...|.++.+.+|+++.|.|.+.|.   |.|.|.|||+...........++.+    .  .........|..++..|+
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da   87 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   87 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence            456677889999999999999999875   8999999997421100000111111    1  111123334788899999


Q ss_pred             eEEEEEEEeCCCceeEEEEEEEEcc-CCCCCC
Q psy18191        203 GVYWCVARNELGFARSKNATLDVAG-KISTAT  233 (238)
Q Consensus       203 G~Y~C~a~N~~G~~~s~~~~L~V~~-~~~~~~  233 (238)
                      |.|+|.|.|..|... ..+.|.|.. ++..|.
T Consensus        88 G~Y~Cevsn~~g~~~-~~~~L~V~~~~~~~p~  118 (126)
T 2dav_A           88 GNYRCEVTYKDKFDS-CSFDLEVHESTGTTPN  118 (126)
T ss_dssp             EEEEEEEECSSCEEE-ECCEEEEECCCCSCCC
T ss_pred             EEEEEEEEeCCCcEE-EEEEEEEEecCCCCCe
Confidence            999999999999986 599999998 555544

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.59  E-value=1.5e-14  Score=111.73  Aligned_cols=156  Identities=13%  Similarity=0.042  Sum_probs=92.5

Q ss_pred             CCCccEEEecccc-cccc-----ceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCE-
Q psy18191         61 YPKPICLRFQDLL-PQSK-----QGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPR-  133 (238)
Q Consensus        61 ~~~~~~~w~~~~~-~~~~-----~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~-  133 (238)
                      .|.|.+.|++... +...     .....|.+.++...|+|.|+|.+.+..  |..           ...+.+.|..+|. 
T Consensus        28 ~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~--~~~-----------~~~~~l~V~~~p~~   94 (202)
T 1vca_A           28 CESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCES--RKL-----------EKGIQVEIYSFPKD   94 (202)
T ss_dssp             CSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETT--EEE-----------EEEEEEEEEBCCSC
T ss_pred             CCCCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECC--ceE-----------eeEEEEEEEeCCCC
Confidence            3457799998431 2211     112347888999999999998876632  210           0111122333332 


Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCC---CEEEEEeCCEEeeccCCccEEEec-CCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPE---PRIEWYKDGSLVSAEIGSHRILLP-AGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~---p~i~W~~~g~~l~~~~~~~~~~~~-~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      +...+. ..+.+|+.+.|.|.+.|.++   +.+.|++++..+............ .....+...|..+..+|.|.|+|.|
T Consensus        95 ~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A  173 (202)
T 1vca_A           95 PEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRA  173 (202)
T ss_dssp             CEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEE
T ss_pred             CEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEE
Confidence            222222 56789999999999988654   379999999987642100000000 0111122225556777899999999


Q ss_pred             EeCCCce------eEEEEEEEEccCCC
Q psy18191        210 RNELGFA------RSKNATLDVAGKIS  230 (238)
Q Consensus       210 ~N~~G~~------~s~~~~L~V~~~~~  230 (238)
                      .|.+|..      ...++.|.|..+|.
T Consensus       174 ~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          174 KLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             EECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             EccccCCCCcceeEeeEEEEEEecCCC
Confidence            9998862      23478888887664

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.59  E-value=1.3e-15  Score=125.90  Aligned_cols=158  Identities=25%  Similarity=0.270  Sum_probs=68.6

Q ss_pred             CCCccEEEeccccccccce-----EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceeccee----------
Q psy18191         61 YPKPICLRFQDLLPQSKQG-----LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVH----------  125 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g-----~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~----------  125 (238)
                      .|.+.+.|++++..+...+     ...|.+.++..+|+|.|+|.+.+.   |.....+...   +.....          
T Consensus        36 ~p~~~v~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~---~~~~~~~~l~---V~~~~~~~~~~~~~~~  109 (334)
T 1ry7_B           36 GPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLT---QRVLCHFSVR---VTDAPSSGDDEDGEDE  109 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCcceEEEECCeeCCCcccEEeccceEEEeecccccCEEEEEEEEeC---CeEEEEEEEE---EeccCccccccccccc
Confidence            3567899999987654322     235677888999999999877664   3222211100   000000          


Q ss_pred             ----cCCccCCEEEeC----CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEe--cCCcEEEEEeec
Q psy18191        126 ----GDGYRVPRITEH----PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL--PAGSLFFLSLVH  195 (238)
Q Consensus       126 ----~~v~~~P~i~~~----~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~--~~~~l~~~~vi~  195 (238)
                          .....+|.+...    +....+.+|+.+.|.|.+.|.|.|.+.|++++..+...........  ....|.    |.
T Consensus       110 ~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~----i~  185 (334)
T 1ry7_B          110 AEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLV----ME  185 (334)
T ss_dssp             ---------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEE----EC
T ss_pred             cccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccceecccceEEEE----EC
Confidence                000124444322    1236788999999999999999999999999988764311111111  223444    56


Q ss_pred             CCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        196 GKKDTDSGVYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      .+..+|+|.|+|.|.|..|... ..+.|.|...+
T Consensus       186 ~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~~  218 (334)
T 1ry7_B          186 SVVPSDRGNYTCVVENKFGSIR-QTYTLDVLERS  218 (334)
T ss_dssp             SCCGGGCCCEEEEEEETTEEEE-EEEEEEEECCC
T ss_pred             CCCcccCEEEEEEEEeCCCCEE-EEEEEEEecCC
Confidence            6799999999999999999986 58999997643

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.59  E-value=1.9e-14  Score=107.33  Aligned_cols=136  Identities=14%  Similarity=0.136  Sum_probs=94.0

Q ss_pred             CccEEEeccccccccceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceE
Q psy18191         63 KPICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAV  142 (238)
Q Consensus        63 ~~~~~w~~~~~~~~~~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~  142 (238)
                      .+.+.|++++..+..... .+.+.++...|+|.|+|...+...          ...     +.+.+..+|.+...+ ...
T Consensus        34 ~~~~~W~~~g~~~~~~~~-~~~~~~~~~~d~G~Y~C~~~~~~~----------s~~-----~~l~v~~~~~~~~~~-~~~   96 (170)
T 3ry4_A           34 SDSIQWFHNGNLIPTHTQ-PSYRFKANNNDSGEYTCQTGQTSL----------SDP-----VHLTVLFEWLVLQTP-HLE   96 (170)
T ss_dssp             SSCEEEEETTEECTTCCS-SEEEEECCGGGCEEEEEEETTSBC----------CCC-----EEEEEECCSEEEECS-CSE
T ss_pred             cceEEEEECCeEcccCcc-ceEEEecccccCeEEEEEEeCCCc----------eEe-----EEEEEECCceEecCC-Cce
Confidence            567999999886654321 123346778888999977765311          011     111233455555443 567


Q ss_pred             EeCCCcEEEEEEE-eeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEE
Q psy18191        143 VPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNA  221 (238)
Q Consensus       143 ~~~G~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~  221 (238)
                      +.+|+.+.|.|.+ .+.|.+.+.|+++|..+...       ..++.|.    |..+..+|+|.|+|.|.|..|...+..+
T Consensus        97 ~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~-------~~~~~L~----i~~v~~~d~G~Y~C~a~n~~g~~~s~~~  165 (170)
T 3ry4_A           97 FQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS-------HLDPTFS----IPQANHSHSGDYHCTGNIGYTLFSSKPV  165 (170)
T ss_dssp             ECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEE-------SSCCEEE----ESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             eecCCeEEEEEECCCCCCCceEEEEECCeEcccc-------CCCCeEE----EEeccccCCEEEEEEEEeCcCccccccE
Confidence            8899999999999 45577999999999887632       1234444    5666999999999999999998656677


Q ss_pred             EEEEc
Q psy18191        222 TLDVA  226 (238)
Q Consensus       222 ~L~V~  226 (238)
                      .|.|+
T Consensus       166 ~l~V~  170 (170)
T 3ry4_A          166 TITVQ  170 (170)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88774

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.58  E-value=6.4e-15  Score=117.18  Aligned_cols=154  Identities=14%  Similarity=0.105  Sum_probs=94.3

Q ss_pred             CccEEEeccccccc--------cceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEE
Q psy18191         63 KPICLRFQDLLPQS--------KQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRI  134 (238)
Q Consensus        63 ~~~~~w~~~~~~~~--------~~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i  134 (238)
                      ...+.|||++....        ......|.+.++...|+|.|+|...+...      .........+.  +.....+|.+
T Consensus        34 ~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~------~s~~S~~~~L~--V~~~~~~P~i  105 (242)
T 1p6f_A           34 AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL------WSEPSNLLDLV--VTEMYDTPTL  105 (242)
T ss_dssp             CCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETTE------ECCCCCCEEEE--EECCSCCCEE
T ss_pred             CcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCCc------cccCCcceEEE--eecccCCCce
Confidence            35789999886332        11234577888889999999987643211      11111111111  1112246777


Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCC-
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNEL-  213 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~-  213 (238)
                      ...+ ...+.+|++++|.|.+.+. .+.+.|+|+|..+...   ......++.|.    |..++.+|+|.|+|.|.|.. 
T Consensus       106 ~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~---~~~~~~~~~l~----I~~v~~~d~G~Y~C~a~n~~~  176 (242)
T 1p6f_A          106 SVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQ---RGYGKVQAEFP----LGPVTTAHRGTYRCFGSYNNH  176 (242)
T ss_dssp             EEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEEE---EEECSSEEEEE----EEECCGGGCEEEEEEEEEETT
T ss_pred             EccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCcc---ccCCCceEEEE----eCCCccccCEEEEEEEECCCC
Confidence            7655 3568899999999998764 4699999999766531   11111233455    44559999999999999974 


Q ss_pred             -CceeEEEEEEEEccCCCCCC
Q psy18191        214 -GFARSKNATLDVAGKISTAT  233 (238)
Q Consensus       214 -G~~~s~~~~L~V~~~~~~~~  233 (238)
                       ....+..+.|.|.+.++.|.
T Consensus       177 ~~s~~S~~~~l~V~~~~~~P~  197 (242)
T 1p6f_A          177 AWSFPSEPVKLLVTGDIENTS  197 (242)
T ss_dssp             EECCCCCCEEEEEEC------
T ss_pred             cccCCCCCEEEEEeccCCCCc
Confidence             33345688999988765553

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.58  E-value=1.3e-14  Score=127.92  Aligned_cols=150  Identities=15%  Similarity=0.141  Sum_probs=84.5

Q ss_pred             CCCccEEEeccccccccce-----EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEE
Q psy18191         61 YPKPICLRFQDLLPQSKQG-----LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRIT  135 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g-----~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~  135 (238)
                      .|.|.+.|++++.++....     ...|.+.++..+|+|.|+|.+.|...  .           ....+.+.+..+|.|.
T Consensus       353 ~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g--~-----------~~~~~~L~V~~~P~i~  419 (527)
T 3qs9_E          353 YPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA--Q-----------FTKMFTLNIRRKPQVL  419 (527)
T ss_dssp             ESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTE--E-----------EEEEEEEC--CCCEEE
T ss_pred             cCCCEEEEEECCEECcCCcccccCCcEEEEecCCcccCEEEEEEEEeCCC--c-----------EEEEEEEEEecCCeEE
Confidence            3578899999987554321     23466778888888998887776432  1           1112334467899987


Q ss_pred             eCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCcc---EE-----EecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSH---RI-----LLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~---~~-----~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      ..+.      |  ..|.|.+.|.|.|.+.|++++..........   ..     ....+.......|.....+|+|.|+|
T Consensus       420 ~~~~------~--~~l~C~a~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C  491 (527)
T 3qs9_E          420 AEAS------A--SQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKC  491 (527)
T ss_dssp             ECCC------C--E---EEEECSSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEE
T ss_pred             EeCC------C--CEEEEEEEEEcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEE
Confidence            7642      2  3579999999999999998765442110000   00     01111111222244445679999999


Q ss_pred             EEEeCCCceeEEEEEEEEccCCCCC
Q psy18191        208 VARNELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~~~~~~~  232 (238)
                      .|.|.+|... ..+.|.|.++.+..
T Consensus       492 ~A~N~~G~~~-~~~~L~V~~p~~~~  515 (527)
T 3qs9_E          492 CAYNSLGTSC-ETILLNSPGPFPFI  515 (527)
T ss_dssp             EEECSSCEEE-EEEEC---------
T ss_pred             EEEeCCCCce-eEEEEecCCCceec
Confidence            9999999997 59999998876554

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.58  E-value=3e-16  Score=129.96  Aligned_cols=162  Identities=12%  Similarity=0.106  Sum_probs=103.9

Q ss_pred             CCCccEEEeccccccccce--------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCC
Q psy18191         61 YPKPICLRFQDLLPQSKQG--------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVP  132 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g--------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P  132 (238)
                      .+.+.+.|++++..+....        ...|.+.++...|+|.|+|.+.+......+...    ....+.........+|
T Consensus       152 ~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~----~~~~l~V~~~~~~~~P  227 (339)
T 3o4o_C          152 KTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNIT----RSIELRIKKKKEETIP  227 (339)
T ss_dssp             SSCCCBCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEE----EEEEEEEECCCCCCCC
T ss_pred             CCCceEEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEE----EEEEEEEEcCCCCCCC
Confidence            4577899999887654331        125777888888899999877664321111110    0111111111122477


Q ss_pred             EEEeCCCceEEeCCCcEEEEEEE---eeeC-CCEEEEEeCCEEeeccC-------CccEEEecCCcEE--EEEeecCCCC
Q psy18191        133 RITEHPASAVVPRHEPTTLNCKA---DGYP-EPRIEWYKDGSLVSAEI-------GSHRILLPAGSLF--FLSLVHGKKD  199 (238)
Q Consensus       133 ~i~~~~~~~~~~~G~~~~L~C~~---~g~P-~p~i~W~~~g~~l~~~~-------~~~~~~~~~~~l~--~~~vi~~v~~  199 (238)
                      .+...+....+.+|+.+.|.|.+   .|.| .|.+.|+++|..+....       ........++...  ..+.|..+..
T Consensus       228 ~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~  307 (339)
T 3o4o_C          228 VIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTR  307 (339)
T ss_dssp             EECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCC
T ss_pred             EEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEech
Confidence            88777777888999999999999   8999 89999999997764221       1112222234211  1223677799


Q ss_pred             CCC-eEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191        200 TDS-GVYWCVARNELGFARSKNATLDVAG  227 (238)
Q Consensus       200 ~d~-G~Y~C~a~N~~G~~~s~~~~L~V~~  227 (238)
                      +|+ |.|+|.|.|.+|... ..+.|.+..
T Consensus       308 ~d~~G~Y~C~a~N~~G~~~-~~~~~~~~~  335 (339)
T 3o4o_C          308 EDLHMDFKCVVHNTLSFQT-LRTTVKEHH  335 (339)
T ss_dssp             CSCCCCCEEEEEETTEEEC-CBCCCCC--
T ss_pred             hhcCccEEEEEEeccCceE-EEEEhhHhc
Confidence            998 999999999999996 477666543

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.58  E-value=3.4e-14  Score=115.84  Aligned_cols=144  Identities=10%  Similarity=0.077  Sum_probs=96.2

Q ss_pred             CCCccEEEeccccccccc---------eEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecC----
Q psy18191         61 YPKPICLRFQDLLPQSKQ---------GLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGD----  127 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~---------g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~----  127 (238)
                      .|.+.+.|++++.++...         +...|.+.++..+|+|.|+|.+.+..  |.....       .+......    
T Consensus        29 ~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~--g~~~s~-------~l~v~~~~~~~~   99 (312)
T 2y23_A           29 TPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTD--GIASSY-------LIDEEELKRLLA   99 (312)
T ss_dssp             CTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSC--CCCEEE-------EECHHHHHHHHH
T ss_pred             CCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCC--CcEEEE-------EEEEeeeeeeec
Confidence            567899999998865432         13578888999999999998877642  211110       11100000    


Q ss_pred             ---CccCCEEEeCC-CceEEeCCCcEEEEEEEe-eeCCCEEEEEeCCEEeeccCCccEEEec--CCcEEEEEeecCCCCC
Q psy18191        128 ---GYRVPRITEHP-ASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLP--AGSLFFLSLVHGKKDT  200 (238)
Q Consensus       128 ---v~~~P~i~~~~-~~~~~~~G~~~~L~C~~~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~--~~~l~~~~vi~~v~~~  200 (238)
                         ...+|.+...+ ....+.+|+.+.|.|.+. +.|.|.+.|++++..+... ....+...  .+.  ....|..+..+
T Consensus       100 ~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~-~~~~~~~~~~~~~--~~L~i~~~~~~  176 (312)
T 2y23_A          100 LSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEG-PKYKMHIDRNTGI--IEMFMEKLQDE  176 (312)
T ss_dssp             HHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSS-SSCEEEEETTTTE--EEEEESCCCGG
T ss_pred             ccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeC-CcEEEEEccCCCE--EEEEEccCCcc
Confidence               00145544433 367889999999999998 8999999999999998753 22233222  233  22237788999


Q ss_pred             CCeEEEEEEEeCCCce
Q psy18191        201 DSGVYWCVARNELGFA  216 (238)
Q Consensus       201 d~G~Y~C~a~N~~G~~  216 (238)
                      |+|.|+|.|.|..+..
T Consensus       177 d~G~Y~C~~~~~~~~~  192 (312)
T 2y23_A          177 DEGTYTFQLQDGKATN  192 (312)
T ss_dssp             GCEEEEEEEESSSCEE
T ss_pred             cCEeEEEEEEeCCceE
Confidence            9999999998866555

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.57  E-value=1.3e-15  Score=108.12  Aligned_cols=104  Identities=15%  Similarity=0.224  Sum_probs=79.7

Q ss_pred             ecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCE-EEEEeCCEEeeccCCcc-EE--EecCCcEEEEEeecCCCCC
Q psy18191        125 HGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPR-IEWYKDGSLVSAEIGSH-RI--LLPAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       125 ~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~-i~W~~~g~~l~~~~~~~-~~--~~~~~~l~~~~vi~~v~~~  200 (238)
                      .+.+..+|.|.. +....+.+|+.+.|.|.+.|.|.|. +.|++++..+......+ .+  ...++.....+.|..+..+
T Consensus         8 ~l~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   86 (122)
T 2cry_A            8 TLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRA   86 (122)
T ss_dssp             CCCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHH
T ss_pred             EEEEecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChh
Confidence            344778999988 7888899999999999999999997 99999998887421122 22  1113322233347888999


Q ss_pred             CC-eEEEEEEEeCCCceeEEEEEEEEccCCC
Q psy18191        201 DS-GVYWCVARNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       201 d~-G~Y~C~a~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      |. |.|+|.|.|.+|... ..+.|.|.++..
T Consensus        87 D~~G~Y~C~a~N~~G~~~-~~~~l~V~~~~~  116 (122)
T 2cry_A           87 DFQTIYNCTAWNSFGSDT-EIIRLKEQGSEM  116 (122)
T ss_dssp             HHHSCEEEEEECSSCEEE-EEECCCCSCSSC
T ss_pred             hCCceEEEEEECCCCeEE-EEEEEEECCCCC
Confidence            99 999999999999997 599999987543

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.57  E-value=1.6e-14  Score=95.89  Aligned_cols=82  Identities=21%  Similarity=0.373  Sum_probs=61.3

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      ..++.+.+|+++.|.|.+.| |.|.+.|+|||..|..+ ....+...++...+  .|..+..+|+|.|+|.|.|    ..
T Consensus         3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~-~~~~~~~~~~~~~L--~I~~~~~~D~G~Y~C~a~n----~~   74 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQ-GRVQLEQAGARQVL--RVQGARSGDAGEYLCDAPQ----DS   74 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCC-SSEEEEECSSCEEE--EESSCSSTTCEEEEEECTT----TC
T ss_pred             CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEcccc-ccEEEeecCCeEEE--EecCCCCcccEEEEEEECC----EE
Confidence            45788999999999999866 88999999999999763 22333333332222  3788899999999998854    43


Q ss_pred             EEEEEEEEccC
Q psy18191        218 SKNATLDVAGK  228 (238)
Q Consensus       218 s~~~~L~V~~~  228 (238)
                       ..+.|.|..|
T Consensus        75 -~~a~l~V~eP   84 (84)
T 2lu7_A           75 -RIFLVSVEEP   84 (84)
T ss_dssp             -EEEEEEECCC
T ss_pred             -EEEEEEEECC
Confidence             4888888754

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.56  E-value=2.4e-15  Score=123.00  Aligned_cols=148  Identities=11%  Similarity=0.144  Sum_probs=97.1

Q ss_pred             CCccEEEeccccccccc-------eEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEE
Q psy18191         62 PKPICLRFQDLLPQSKQ-------GLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRI  134 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~-------g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i  134 (238)
                      +.+.+.|++++..+...       +...|.+.++..+|+|.|+|.+.+..  |.....           +.+.+..+|.+
T Consensus        35 p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~--g~~~~~-----------~~l~v~~~~~~  101 (317)
T 2y25_A           35 KETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDR--GKDKSR-----------LKLVDEAFKEL  101 (317)
T ss_dssp             TTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSS--CEEEEE-----------ECCSTHHHHHH
T ss_pred             CCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCC--CcEEEE-----------EEEEEecCccc
Confidence            56789999998755432       23578888999999999998776632  211111           11112333333


Q ss_pred             EeCCCceEEeCCCcEEEEEEEee----------eCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeE
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADG----------YPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g----------~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~  204 (238)
                      ...+....+..|+.+.|.|.+.|          .|.|.+.|+++|..+... ........++...+  .|..+..+|+|.
T Consensus       102 ~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~L--~i~~~~~~d~G~  178 (317)
T 2y25_A          102 MMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS-DRVKTGVTGEQIWL--QINEPTPNDKGK  178 (317)
T ss_dssp             HHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCC-SSEEEEECSSEEEE--EEESCCGGGCEE
T ss_pred             cccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCC-CCeEEeccCCEEEE--EECcCCcccCee
Confidence            32233344567777888887766          789999999999888743 22222223332222  266779999999


Q ss_pred             EEEEEEeCCCceeEEEEEEEEc
Q psy18191        205 YWCVARNELGFARSKNATLDVA  226 (238)
Q Consensus       205 Y~C~a~N~~G~~~s~~~~L~V~  226 (238)
                      |+|.|.|..|... ..+.|.|.
T Consensus       179 Y~C~a~n~~g~~~-~~~~l~v~  199 (317)
T 2y25_A          179 YVMELFDGKTGHQ-KTVDLSGQ  199 (317)
T ss_dssp             EEEEEECSSCEEE-EEEEECHH
T ss_pred             EEEEEEeCCceEE-EEEEEeee
Confidence            9999999999986 47777653

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.56  E-value=2.6e-14  Score=111.68  Aligned_cols=134  Identities=16%  Similarity=0.263  Sum_probs=80.0

Q ss_pred             EEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcE-EEEEEE-eeeCC
Q psy18191         83 LVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPT-TLNCKA-DGYPE  160 (238)
Q Consensus        83 l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~-~L~C~~-~g~P~  160 (238)
                      |.+.++..+|+|.|+|.+.+.. .|.....      ..+.  .......|.+...+....+.+|+.+ .|.|.+ .|.|.
T Consensus        79 L~i~~v~~~D~G~Y~C~~~~~~-~~~~~~~------~~l~--V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~  149 (231)
T 2pet_A           79 LVLAEAQVGDERDYVCVVRAGA-AGTAEAT------ARLN--VFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPA  149 (231)
T ss_dssp             EEESSCCGGGCEEEEEEEECGG-GCEEEEE------EEEE--EEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSC
T ss_pred             EEEcccCcccCceEEEEEEecC-CCceEEE------EEEE--EEecCCCcEEecCCcceeecCCCceEEEEEEeECcccC
Confidence            6667777788888887655532 1211111      0111  1111233677766667777889988 999999 89999


Q ss_pred             CEEEEEeCCEEeeccC---CccEEE-----ecCCcEEE--EEeecCCCCCCCeEEEEEEEe-----CCCceeEEEEEEEE
Q psy18191        161 PRIEWYKDGSLVSAEI---GSHRIL-----LPAGSLFF--LSLVHGKKDTDSGVYWCVARN-----ELGFARSKNATLDV  225 (238)
Q Consensus       161 p~i~W~~~g~~l~~~~---~~~~~~-----~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N-----~~G~~~s~~~~L~V  225 (238)
                      |.+.|++++..+....   ....+.     ..++...+  ...|......|.|.|+|.|.|     ..|...+..+.|.|
T Consensus       150 p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V  229 (231)
T 2pet_A          150 PKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL  229 (231)
T ss_dssp             CEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred             CEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence            9999999999887542   111111     11222221  122444455569999999999     45552234555554

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=2.3e-14  Score=98.46  Aligned_cols=96  Identities=20%  Similarity=0.336  Sum_probs=74.7

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      ..||.|...+.+..+.+|+++.|.|.+.+ |.|.+.|++++..+...  .......++... .+.|..+..+|+|.|+|.
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~--~~~~~~~~~~~~-~L~I~~v~~~D~G~Y~C~   81 (103)
T 2edf_A            6 SGPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKS--QKYDVVCEGTMA-MLVIRGASLKDAGEYTCE   81 (103)
T ss_dssp             CCCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCS--SSEEEEEETTEE-EEEESSCCTTTCSEEEEE
T ss_pred             CCCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCC--CCEEEEECCCEE-EEEECCCCcccCEEEEEE
Confidence            36788888888999999999999999988 88899999999888653  222222334322 223788899999999999


Q ss_pred             EEeCCCceeEEEEEEEEccCCCCCC
Q psy18191        209 ARNELGFARSKNATLDVAGKISTAT  233 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~~~~~~~  233 (238)
                      |.|    .. ..+.|.|..++..+.
T Consensus        82 a~n----~~-~~~~l~V~~~p~~~~  101 (103)
T 2edf_A           82 VEA----SK-STASLHVEEKASGPS  101 (103)
T ss_dssp             CSS----CE-EEEEEEECCCSSSSC
T ss_pred             Ecc----CC-cEEEEEEeCCCCCCC
Confidence            999    23 588999998887764

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=7.5e-15  Score=100.38  Aligned_cols=88  Identities=20%  Similarity=0.378  Sum_probs=70.1

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      |..+.+.+|+.+.|.|.+.|.| |.+.|++++..+...  . ++...++.|.    |..+..+|+|.|+|.|.|..|...
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~--~-~~~~~~~~L~----i~~v~~~D~G~Y~C~a~n~~g~~~   81 (99)
T 2cr3_A           10 VESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAES--N-RTRITGEEVE----VQDSVPADSGLYACVTSSPSGSDT   81 (99)
T ss_dssp             EEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCC--S-SEEECSSEEE----ETTCCTTTCEEEEEEEEETTEEEE
T ss_pred             CcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCC--C-cEEEECCEEE----EccCCHHHCEEEEEEEEeCCceEE
Confidence            3456678999999999999987 799999999887642  2 2333355554    677799999999999999999986


Q ss_pred             EEEEEEEEccCCCCCCC
Q psy18191        218 SKNATLDVAGKISTATD  234 (238)
Q Consensus       218 s~~~~L~V~~~~~~~~~  234 (238)
                       ..+.|.|...++.+.+
T Consensus        82 -~~~~l~V~~~~~s~~~   97 (99)
T 2cr3_A           82 -TYFSVNVSDALPSGPS   97 (99)
T ss_dssp             -EEEEECBCSCCSCCCC
T ss_pred             -EEEEEEEecCCCCccc
Confidence             5999999888776654

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.56  E-value=2.1e-14  Score=120.83  Aligned_cols=157  Identities=19%  Similarity=0.271  Sum_probs=92.8

Q ss_pred             ccEEEecccccccc-----ce-E-----EEEEcCCCCCCCC-CceEEEeCCCcccCCceEEeCCCCcceecceecCCccC
Q psy18191         64 PICLRFQDLLPQSK-----QG-L-----MYLVGSQASPDYP-NRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRV  131 (238)
Q Consensus        64 ~~~~w~~~~~~~~~-----~g-~-----~~l~~~~~~~~~~-g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~  131 (238)
                      +.+.|++++.....     .+ .     ..|.+.++..+|+ |.|+|.+.+.. .|..........+ .+.  ......+
T Consensus       136 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~-~~~~~~~~~~~~l-~v~--~~~~~~~  211 (388)
T 2v5m_A          136 EVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRL-TGETRLSATKGRL-VIT--EPISSSA  211 (388)
T ss_dssp             EEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETT-TCCEEECSSCBCE-EEE--CCCSCEE
T ss_pred             ceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCC-CCceeeccccceE-EEe--cCCcCCC
Confidence            67899998763311     01 1     1356667777777 88887665432 1111111000000 110  0000111


Q ss_pred             CEEEe-CCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeecc---CCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        132 PRITE-HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE---IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       132 P~i~~-~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~---~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      |.+.. ......+.+|+.+.|.|.+.|.|.|.+.|++++..+...   ....+....++.|.    |..+..+|+|.|+|
T Consensus       212 p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~----i~~v~~~d~G~Y~C  287 (388)
T 2v5m_A          212 PRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLI----IKDAVVEDSGKYLC  287 (388)
T ss_dssp             EECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEEETTEEE----ESSCCGGGCEEEEE
T ss_pred             CcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceecccCEEE----ECcCCHHHCeEEEE
Confidence            22211 123466789999999999999999999999975322110   01122223355555    56679999999999


Q ss_pred             EEEeCCCceeEEEEEEEEccCC
Q psy18191        208 VARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      .|.|..|... ..+.|.|..++
T Consensus       288 ~a~n~~g~~~-~~~~l~V~~~p  308 (388)
T 2v5m_A          288 VVNNSVGGES-VETVLTVTAPL  308 (388)
T ss_dssp             EEECSSCEEE-EEEEEEEEEEE
T ss_pred             EEecCCCcee-EEEEEEEeCCC
Confidence            9999999985 58889887654

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.56  E-value=4.1e-14  Score=116.22  Aligned_cols=159  Identities=13%  Similarity=0.015  Sum_probs=96.5

Q ss_pred             CccEEEeccccccccc-----eEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeC
Q psy18191         63 KPICLRFQDLLPQSKQ-----GLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEH  137 (238)
Q Consensus        63 ~~~~~w~~~~~~~~~~-----g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~  137 (238)
                      .+.+.|+|++......     ....|.+.++..+|+|.|+|.+.+......   .........+.  ......+|.+...
T Consensus        51 ~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~---~~~~s~~~~l~--V~~~~~~p~~~~~  125 (316)
T 3vh8_G           51 FNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTG---WSAPSNPVVIM--VTGNHRKPSLLAH  125 (316)
T ss_dssp             CCSEEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSS---BCCCCCCEEEE--EECSSCCCEEEEE
T ss_pred             CceEEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEEEEcCCCCcc---eecCCCcEEEE--EecCCCCCeEEec
Confidence            5689999998754321     123567788999999999987654211000   00001111111  1112346777766


Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCce-
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA-  216 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~-  216 (238)
                      +... +.+|+.+.|.|.+. .+.+.+.|++++..+...  ................|..++.+|+|.|+|.|.|..|.. 
T Consensus       126 ~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~  201 (316)
T 3vh8_G          126 PGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPS--RLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQ  201 (316)
T ss_dssp             SCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCE--EEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTB
T ss_pred             CCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccc--eeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCcc
Confidence            6554 88999999999994 466789999999776421  001111111111122367779999999999999998852 


Q ss_pred             ---eEEEEEEEEccCCC
Q psy18191        217 ---RSKNATLDVAGKIS  230 (238)
Q Consensus       217 ---~s~~~~L~V~~~~~  230 (238)
                         .+..+.|.|...+.
T Consensus       202 ~s~~s~~~~l~V~~~~~  218 (316)
T 3vh8_G          202 LSAPSDPLDIVVTGPYE  218 (316)
T ss_dssp             CCCCCCCEEEEEECSSC
T ss_pred             ccCCCCCEEEEecCCCC
Confidence               13467788766443

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.55  E-value=1.6e-14  Score=115.98  Aligned_cols=154  Identities=13%  Similarity=0.061  Sum_probs=95.2

Q ss_pred             CccEEEecccccccc----------ceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCC
Q psy18191         63 KPICLRFQDLLPQSK----------QGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVP  132 (238)
Q Consensus        63 ~~~~~w~~~~~~~~~----------~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P  132 (238)
                      .+.+.|||++.....          .....|.+..+..+|+|.|+|.+.+......   .........+.  +.....+|
T Consensus        34 ~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~---~s~~S~~~~L~--V~~~~~~P  108 (257)
T 1b6u_A           34 FQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQ---LSAPSDPLDIV--ITGLYEKP  108 (257)
T ss_dssp             CSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTS---CCCCCCCEEEE--EECSSCCC
T ss_pred             CcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCcc---ccccCCCEEEe--cccCCCCc
Confidence            457999999874321          1234577889999999999987654211000   00001111111  11123567


Q ss_pred             EEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEe----cCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL----PAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       133 ~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~----~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      .+...+. ..+.+|++++|.|.+.+.| +.+.|+|+|..+....  .....    .++.|.+.    .++  |+|.|+|.
T Consensus       109 ~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~--~~~~~~~~~~~~~l~I~----~v~--D~G~Y~C~  178 (257)
T 1b6u_A          109 SLSAQPG-PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRF--SAGPKVNGTFQADFPLG----PAT--HGGTYRCF  178 (257)
T ss_dssp             EEECSSC-TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECC--BCBCCSSSCCBEEEEEE----ECC--SCEEEEEE
T ss_pred             ceEccCC-CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCccc--ccccccCCceeEEEEec----ccc--cCEEEEEE
Confidence            8876655 3578999999999998764 7999999998765421  11111    12345544    346  99999999


Q ss_pred             EEeCC----CceeEEEEEEEEccCCCC
Q psy18191        209 ARNEL----GFARSKNATLDVAGKIST  231 (238)
Q Consensus       209 a~N~~----G~~~s~~~~L~V~~~~~~  231 (238)
                      |.|..    ....+..+.|.|.+++..
T Consensus       179 a~~~~~p~~~s~~S~pl~L~V~g~p~~  205 (257)
T 1b6u_A          179 GSFRDSPYEWSNSSDPLLVSVTGNPSN  205 (257)
T ss_dssp             EECSSCTTBBCCCCCCEEECCBCCC--
T ss_pred             EEcCCCCcccccCCCCEEEEEeccCCC
Confidence            99753    333456789999887643

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.55  E-value=8.7e-15  Score=113.26  Aligned_cols=134  Identities=15%  Similarity=0.179  Sum_probs=83.3

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee-C
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY-P  159 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P  159 (238)
                      ..|.|.++.++|+|.|+|.+.+..  |..... .  ....+. +......+|.+...+....+.+|+.+.|.|.+.|. |
T Consensus        70 ~~L~I~~v~~~D~G~Y~C~~~~~~--~~~~~~-~--~~~~l~-V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p  143 (213)
T 3mj8_L           70 ATLTISKAQAGDEADYYCQSWDGT--NSAWVF-G--SGTKVT-VLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYP  143 (213)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETT--TTEEEE-B--CCEEEE-EECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBS
T ss_pred             EEEEECCCChhhCEEEEEEeccCC--cceeEE-c--CceEEE-EeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeC
Confidence            457888899999999997765531  100000 0  111111 11112367888776655555689999999999986 3


Q ss_pred             C-CEEEEEeCCEEeeccCC-ccEEEecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCceeEEEEE
Q psy18191        160 E-PRIEWYKDGSLVSAEIG-SHRILLPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGFARSKNAT  222 (238)
Q Consensus       160 ~-p~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~  222 (238)
                      + +.+.|+++|..+..... ..... .++...+  .+.|..+..+|.|.|+|.|.|..+... +.+.
T Consensus       144 ~~~~v~W~k~g~~l~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~-~~~~  208 (213)
T 3mj8_L          144 ADVAVTWEADGTPITQGVKTTQPSK-SDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVE-KSLS  208 (213)
T ss_dssp             SCCEEEEEETTEEECTTEEECCCEE-ETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEE-EEEC
T ss_pred             CCeEEEEEcCCcccCCCcccCCcCc-cCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEE-eeec
Confidence            3 39999999998864210 00111 2333322  123566688899999999999997765 3443

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1.9e-14  Score=99.02  Aligned_cols=94  Identities=19%  Similarity=0.262  Sum_probs=70.3

Q ss_pred             cCCEEEeCCCc---eEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEE
Q psy18191        130 RVPRITEHPAS---AVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       130 ~~P~i~~~~~~---~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      .+|.+...|..   +.+.+|+++.|.|.+.|.|.| +.|++++..+... ....+...+....+  .|..+..+|+|.|+
T Consensus         6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~-~~~~~~~~~~~~~L--~I~~~~~~D~G~Y~   81 (104)
T 2e6p_A            6 SGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEES-ELLVVKMDGRKHRL--ILPEAKVQDSGEFE   81 (104)
T ss_dssp             SSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCB-TTBEEEEETTEEEE--EESSCCTTTCEEEE
T ss_pred             CCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCC-CCEEEEeCCCEEEE--EECCCChhhCEEEE
Confidence            46666666666   788999999999999999999 9999999988753 22333322322222  37788999999999


Q ss_pred             EEEEeCCCceeEEEEEEEEccCCCCC
Q psy18191        207 CVARNELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       207 C~a~N~~G~~~s~~~~L~V~~~~~~~  232 (238)
                      |.|.|..+     .+.|.|..++.++
T Consensus        82 C~a~n~~~-----~~~l~V~~~P~pp  102 (104)
T 2e6p_A           82 CRTEGVSA-----FFGVTVQDPSGPS  102 (104)
T ss_dssp             EECSSCCC-----CEEEEEECCCCSS
T ss_pred             EEECCceE-----EEEEEEcCCCCCc
Confidence            99999743     6678888777655

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.55  E-value=7.9e-14  Score=110.42  Aligned_cols=138  Identities=18%  Similarity=0.307  Sum_probs=84.8

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecC-----------CccCCEEEeCCCceEEeCCCcE
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGD-----------GYRVPRITEHPASAVVPRHEPT  149 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~-----------v~~~P~i~~~~~~~~~~~G~~~  149 (238)
                      ..|.|.++.++|+|.|.|.+.+....+    .+...  ..+. +...           ...+|.+...+..+.+.+|+++
T Consensus        81 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~----~~~~~--~~l~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v  153 (247)
T 2ghw_B           81 LYLQMNSLRAEDTAVYYCARDRSYYLD----YWGQG--TLVT-VSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERA  153 (247)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEEE----EECCC--EEEE-ECSCC------------CCCCEEEECSEEEECTTSCE
T ss_pred             EEEEECcCCHHHCEEEEEeeeccCCcc----ccCCc--eEEE-EecccccccccccCCCCcceEEEccCCEEEecCCCcE
Confidence            358888999999999997766531100    11000  1111 0000           1235566666777889999999


Q ss_pred             EEEEEEeeeCCCEEEEEe--CCEEeec----------cCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        150 TLNCKADGYPEPRIEWYK--DGSLVSA----------EIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       150 ~L~C~~~g~P~p~i~W~~--~g~~l~~----------~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      .|.|.+.+.|.|.+.|++  ++..+..          ....+......+.. ..+.|..+..+|+|.|.|.|.|..+...
T Consensus       154 ~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~a~~~~~~~~  232 (247)
T 2ghw_B          154 TLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTD-FTLTISRLEPEDFAVYYCQQRSNWPPTF  232 (247)
T ss_dssp             EEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSE-EEEEECSCCGGGCEEEEEEECSSSSCEE
T ss_pred             EEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCe-EEEEECcCCHHHCEEEEEEEccCCCceE
Confidence            999999999999999999  5543310          00111111112211 1223788899999999999999655443


Q ss_pred             EEEEEEEEc
Q psy18191        218 SKNATLDVA  226 (238)
Q Consensus       218 s~~~~L~V~  226 (238)
                      .....|.|.
T Consensus       233 g~~t~l~V~  241 (247)
T 2ghw_B          233 GQGTKVEVK  241 (247)
T ss_dssp             CCCEEEEEC
T ss_pred             cCCEEEEEC
Confidence            345677876

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.55  E-value=1.7e-14  Score=101.78  Aligned_cols=100  Identities=17%  Similarity=0.219  Sum_probs=69.1

Q ss_pred             CCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEe-cCC-cEEEEEeecCCCCCCCeE
Q psy18191        127 DGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL-PAG-SLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       127 ~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~-~l~~~~vi~~v~~~d~G~  204 (238)
                      .+..+|.+...... .  ..+...|.|.+.|.|.|.+.|+++|..+.... ...... ..+ .....+.|..+..+|+|.
T Consensus         4 ~V~~pP~i~~~~~~-~--~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~   79 (118)
T 1wwc_A            4 TVYYPPRVVSLEEP-E--LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESK-IIHVEYYQEGEISEGCLLFNKPTHYNNGN   79 (118)
T ss_dssp             CCCCCCCCCCCCCC-C--CCCEEEEEEEEECSSCCEEEEEETTEECCCSS-SEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred             EEecCCceeccCCC-e--eccceEEEEEeeeeCCCeEEEEECCEECCCCC-ceeEEEeccCccccEEEEECCCChhcCEE
Confidence            35678887554222 1  23567899999999999999999999887542 122221 111 011122366779999999


Q ss_pred             EEEEEEeCCCceeEEEEEEEEccCCCC
Q psy18191        205 YWCVARNELGFARSKNATLDVAGKIST  231 (238)
Q Consensus       205 Y~C~a~N~~G~~~s~~~~L~V~~~~~~  231 (238)
                      |+|.|.|..|... ..+.|.|...|..
T Consensus        80 Y~C~a~N~~G~~~-~~~~l~v~~~P~~  105 (118)
T 1wwc_A           80 YTLIAKNPLGTAN-QTINGHFLKEPFP  105 (118)
T ss_dssp             EEEEEEETTEEEE-EEEEECCSCCCCC
T ss_pred             EEEEEECCCCeEe-eEEEEEEccCCCc
Confidence            9999999999997 4999888776543

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.54  E-value=1.5e-14  Score=120.19  Aligned_cols=147  Identities=12%  Similarity=0.103  Sum_probs=96.2

Q ss_pred             CCccEEEecccc------ccc----cceE----EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecC
Q psy18191         62 PKPICLRFQDLL------PQS----KQGL----MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGD  127 (238)
Q Consensus        62 ~~~~~~w~~~~~------~~~----~~g~----~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~  127 (238)
                      +.+.+.|++++.      ++.    ...+    ..|.+.++..+|+|.|+|.+.+..  |.....      ..+.     
T Consensus        46 ~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~--~~~~~~------~~l~-----  112 (349)
T 4dep_C           46 AGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTT--YCSKVA------FPLE-----  112 (349)
T ss_dssp             TTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEEEEEEEECSS--CEEEEE------EEEE-----
T ss_pred             CCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEEEEEEEecCC--ceEEEE------EEEE-----
Confidence            468999999883      121    1111    257788899999999998776632  211111      0111     


Q ss_pred             CccCCEE----EeCCCceEEeCCCcEEEEEEE-----eeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCC
Q psy18191        128 GYRVPRI----TEHPASAVVPRHEPTTLNCKA-----DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKK  198 (238)
Q Consensus       128 v~~~P~i----~~~~~~~~~~~G~~~~L~C~~-----~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~  198 (238)
                      +..+|.+    ...+....+.+|+.+.|.|.+     .|.|.|.+.|++++..+..   ...+...+..|.    |..+.
T Consensus       113 V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~---~~~~~~~~~~L~----i~~v~  185 (349)
T 4dep_C          113 VVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQN---FNNVIPEGMNLS----FLIAL  185 (349)
T ss_dssp             EECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCS---CSSEEEETTEEE----EESCC
T ss_pred             EecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCC---ccceeecCCEEE----Eeeee
Confidence            1122211    122345677899999999985     7889999999999998863   223333445565    45569


Q ss_pred             CCCCeEEEEEEEeCC-Cce--eEEEEEEEEccC
Q psy18191        199 DTDSGVYWCVARNEL-GFA--RSKNATLDVAGK  228 (238)
Q Consensus       199 ~~d~G~Y~C~a~N~~-G~~--~s~~~~L~V~~~  228 (238)
                      .+|+|.|+|.|.|.. |..  .+..+.|.|..+
T Consensus       186 ~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~  218 (349)
T 4dep_C          186 ISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGS  218 (349)
T ss_dssp             GGGCEEEEEEEEEEETTEEEEEEEEEEEEEECC
T ss_pred             ecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEcc
Confidence            999999999999998 554  245778888654

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.54  E-value=2.9e-14  Score=116.74  Aligned_cols=150  Identities=15%  Similarity=0.102  Sum_probs=97.1

Q ss_pred             ccCCCccEEEeccccc--ccc---ce----EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCc
Q psy18191         59 GFYPKPICLRFQDLLP--QSK---QG----LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGY  129 (238)
Q Consensus        59 ~~~~~~~~~w~~~~~~--~~~---~g----~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~  129 (238)
                      +..+.+.+.|++++..  ...   ..    -..|.+.++..+|+|.|+|.+.+..  |.....        +....  ..
T Consensus        31 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~--g~~~~~--------~~v~v--~~   98 (315)
T 1itb_B           31 PNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSS--YCLRIK--------ISAKF--VE   98 (315)
T ss_dssp             SCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSS--CCCCEE--------CCCEE--EC
T ss_pred             CcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCc--eEEEEE--------EEEEE--eC
Confidence            3334678999998752  111   11    1257788899999999998776642  221111        11000  11


Q ss_pred             cCCEEEeCC---CceEEeCCCcEEEEEEE------eeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCC
Q psy18191        130 RVPRITEHP---ASAVVPRHEPTTLNCKA------DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       130 ~~P~i~~~~---~~~~~~~G~~~~L~C~~------~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~  200 (238)
                      .+|.+...+   ....+..|+++.|.|.+      .|.|.|.+.|++++..+...  ..+....++.|.    |..+..+
T Consensus        99 ~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~--~~~~~~~~~~L~----i~~v~~~  172 (315)
T 1itb_B           99 NEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD--NIHFSGVKDRLI----VMNVAEK  172 (315)
T ss_dssp             CCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCC--SSSEEEETTEEE----ESSCCGG
T ss_pred             CCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCc--cceEeecCceEE----EEeceeh
Confidence            233332221   23567899999999998      89999999999999998653  223344466665    5666999


Q ss_pred             CCeEEEEEEE-eCCCceeE--EEEEEEEc
Q psy18191        201 DSGVYWCVAR-NELGFARS--KNATLDVA  226 (238)
Q Consensus       201 d~G~Y~C~a~-N~~G~~~s--~~~~L~V~  226 (238)
                      |+|.|+|.|. |..|...+  ..+.|.+.
T Consensus       173 d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~  201 (315)
T 1itb_B          173 HRGNYTCHASYTYLGKQYPITRVIEFITL  201 (315)
T ss_dssp             GCEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             hCcEEEEEEEcCCCCcEEEEEEEEEEEEe
Confidence            9999999999 88898732  24444443

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.54  E-value=1.3e-13  Score=106.88  Aligned_cols=103  Identities=22%  Similarity=0.380  Sum_probs=79.3

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      ...+|.| ..+.++.+.+|+.+.|.|.+.|.|.|.+.|+++|..+.............+.... +.|..+..+|+|.|+|
T Consensus        16 ~~~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~-L~i~~~~~~d~G~Y~C   93 (215)
T 3mtr_A           16 HMYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASY-LEVTPDSENDFGNYNC   93 (215)
T ss_dssp             CCEEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEE-EEECCCSGGGCEEEEE
T ss_pred             eecCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeE-EEEecCChhhCeEEEE
Confidence            3467888 4667789999999999999999999999999999988754222222222111111 2267779999999999


Q ss_pred             EEEeCCCceeEEEEEEEEccCCCCCC
Q psy18191        208 VARNELGFARSKNATLDVAGKISTAT  233 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~~~~~~~~  233 (238)
                      .|.|..|... ..+.|.|..++.+|.
T Consensus        94 ~a~n~~g~~~-~~~~l~v~~~P~~p~  118 (215)
T 3mtr_A           94 TAVNRIGQES-LEFILVQADTPSSPS  118 (215)
T ss_dssp             EEECSSCEEE-EEEEEEECCCCCCCE
T ss_pred             EEEECCCceE-EEEEEEECCCCCCCc
Confidence            9999999996 599999988887764

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.53  E-value=8.5e-14  Score=96.36  Aligned_cols=99  Identities=20%  Similarity=0.311  Sum_probs=71.2

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeee--CCCEEEEEeCCEEeeccCCccEEEe--cCC-c--EEEEEeecCCCCC
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGY--PEPRIEWYKDGSLVSAEIGSHRILL--PAG-S--LFFLSLVHGKKDT  200 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~--P~p~i~W~~~g~~l~~~~~~~~~~~--~~~-~--l~~~~vi~~v~~~  200 (238)
                      ...+|.|...|....+.+|+++.|.|.+.|.  |.|.+.|++++..+...........  .++ .  ....+.|..+..+
T Consensus         7 ~~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   86 (112)
T 3so5_A            7 DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFT   86 (112)
T ss_dssp             -CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGG
T ss_pred             CCCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccc
Confidence            3468999998889999999999999999865  4689999999988764210001111  110 0  0112236778999


Q ss_pred             CCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191        201 DSGVYWCVARNELGFARSKNATLDVA  226 (238)
Q Consensus       201 d~G~Y~C~a~N~~G~~~s~~~~L~V~  226 (238)
                      |+|.|+|.|.|..|...+..+.|.|.
T Consensus        87 D~G~Y~C~a~n~~g~~~s~~~~l~V~  112 (112)
T 3so5_A           87 SEGXYQCVISNHFGSSYSVXAXLTIN  112 (112)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             cCCeEEEEEEeCCCcEEEeEEEEEeC
Confidence            99999999999999954468888773

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.53  E-value=3.6e-14  Score=97.57  Aligned_cols=92  Identities=18%  Similarity=0.309  Sum_probs=68.8

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCC-ccEEEecC--CcEEEEEeecCCCCCCCeEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG-SHRILLPA--GSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~-~~~~~~~~--~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      |+.|...+.++.+.+|+++.|.|.+.+ |.|.+.|++++..+..... ...+...+  ..|.+    ..+..+|+|.|+|
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I----~~~~~~D~G~Y~C   81 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILII----EGATKADAAEYSV   81 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEE----EEECTTTCSEEEE
T ss_pred             CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEE----CCCCcccCEEEEE
Confidence            444667778899999999999999987 7799999999998875421 12333222  23444    4559999999999


Q ss_pred             EEEeCCCceeEEEEEEEEccCCCCC
Q psy18191        208 VARNELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~~~~~~~  232 (238)
                      .|.|    .. ..+.|.|..++.++
T Consensus        82 ~a~n----~~-~~~~l~V~~~p~p~  101 (103)
T 1x44_A           82 MTTG----GQ-SSAKLSVDLKSGPS  101 (103)
T ss_dssp             EETT----EE-EEEEEEEECCCSCC
T ss_pred             EECC----Cc-EEEEEEEeCCCCCC
Confidence            9988    33 48899998877654

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.53  E-value=2.2e-14  Score=116.16  Aligned_cols=139  Identities=12%  Similarity=0.103  Sum_probs=96.9

Q ss_pred             cEEEecccccc---ccceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCce
Q psy18191         65 ICLRFQDLLPQ---SKQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASA  141 (238)
Q Consensus        65 ~~~w~~~~~~~---~~~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~  141 (238)
                      .+.|++++..+   ...+ ..|.+.++..+|+|.|+|.+.+    |. .           ..+.+.+..+|.+...+...
T Consensus        39 ~i~W~~~~~~~~~~~~~~-~~L~i~~~~~~d~G~Y~C~~~n----g~-~-----------~~~~l~V~~~~~~~~~~~~~  101 (290)
T 2o26_X           39 FVRWTFKTYFNEMVENKK-NEWIQEKAEATRTGTYTCSNSN----GL-T-----------SSIYVFVRDPAKLFLVGLPL  101 (290)
T ss_dssp             EEEEEEECSSSCEEEECS-SEEEETTCCGGGCEEEEEEESS----SC-E-----------EEEEEEEECSSCCBCCCCCE
T ss_pred             cEEEecCCcceeeecCCC-ceEEEeccCHHhCeEEEEEeeC----Cc-c-----------EEEEEEEeCCCcccccccce
Confidence            78999998755   1122 4677788888899999977766    21 1           11111133455544556678


Q ss_pred             EEeCCCcEEEEEEEeeeCC-CEEEE-EeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCe-EEEEEEEeCCCceeE
Q psy18191        142 VVPRHEPTTLNCKADGYPE-PRIEW-YKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSG-VYWCVARNELGFARS  218 (238)
Q Consensus       142 ~~~~G~~~~L~C~~~g~P~-p~i~W-~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G-~Y~C~a~N~~G~~~s  218 (238)
                      .+.+|+.+.|.|.+.+ |. |.+.| +++|..+..  .........+.|.    |..+..+|+| .|+|.|.|..|...+
T Consensus       102 ~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~--~~~~~~~~~~~L~----i~~v~~~d~G~~Y~C~a~n~~~~~~s  174 (290)
T 2o26_X          102 FGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPT--DLTFVPNPKAGIT----IKNVKRAYHRLCVRCAAQRDGTWLHS  174 (290)
T ss_dssp             EEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCT--TCEEEEETTTEEE----EESCCGGGTTCEEEEEEEETTEEEEC
T ss_pred             EEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCC--CCceeeCCCCCEE----EecccHHHCCCEEEEEEEECCceEEe
Confidence            8899999999999986 77 99999 568877753  2222333455665    5566999999 999999999777554


Q ss_pred             EEEEEEEcc
Q psy18191        219 KNATLDVAG  227 (238)
Q Consensus       219 ~~~~L~V~~  227 (238)
                      ..+.|.|..
T Consensus       175 ~~~~l~V~~  183 (290)
T 2o26_X          175 DKFTLKVRE  183 (290)
T ss_dssp             CCEEEEEEC
T ss_pred             EEEEEEEEe
Confidence            468888863

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.53  E-value=3.1e-14  Score=119.18  Aligned_cols=145  Identities=11%  Similarity=-0.059  Sum_probs=96.6

Q ss_pred             CCCccEEEeccccccccceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPAS  140 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~  140 (238)
                      .|.+.+.|++++..... +...|.+.++..+|+|.|+|.+.+..  +    ...      . .+...+..+|..   +..
T Consensus       123 ~p~~~v~W~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~~~~--~----~~~------~-~~~l~v~~~p~~---~~~  185 (363)
T 1wio_A          123 GSSPSVQCRSPRGKNIQ-GGKTLSVSQLELQDSGTWTCTVLQNQ--K----KVE------F-KIDIVVLAFQKA---SSI  185 (363)
T ss_dssp             TCCCCEEEECSSSCEEE-ESSEEEECSBCGGGCEECEEEEEETT--E----EEE------E-CCEECEECCSCS---EEE
T ss_pred             CCCCeEEEEcCCCcccc-cceEEEEeeCChhcCCEEEEEEecCC--C----eEE------E-EEEEEEecCCCC---CCc
Confidence            45778999998764322 23457788899999999998776531  1    100      0 011112233332   145


Q ss_pred             eEEeCCCcEEEEEEEee-----eCCCEEEEEeCCEEeecc-------CCccEEEe----------cCC--cEEEEEeecC
Q psy18191        141 AVVPRHEPTTLNCKADG-----YPEPRIEWYKDGSLVSAE-------IGSHRILL----------PAG--SLFFLSLVHG  196 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~~g-----~P~p~i~W~~~g~~l~~~-------~~~~~~~~----------~~~--~l~~~~vi~~  196 (238)
                      ..+.+|+.+.|.|.+.|     .|.|.+.|+++|..+...       .....+..          .++  .|.    |..
T Consensus       186 ~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~----i~~  261 (363)
T 1wio_A          186 VYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLT----LPQ  261 (363)
T ss_dssp             EEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEE----ESS
T ss_pred             eEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEE----Ecc
Confidence            67889999999998877     889999999999877641       11111111          222  333    667


Q ss_pred             CCCCCCeEEEEEEEeC--CCceeEEEEEEEEcc
Q psy18191        197 KKDTDSGVYWCVARNE--LGFARSKNATLDVAG  227 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N~--~G~~~s~~~~L~V~~  227 (238)
                      +..+|+|.|+|.|.|.  .|... ..+.|.|..
T Consensus       262 v~~~d~G~Y~C~a~n~~~~g~~~-~~~~l~V~~  293 (363)
T 1wio_A          262 ALPQYAGSGNLTLALEAKTGKLH-QEVNLVVMR  293 (363)
T ss_dssp             BCGGGCEEEEEEECBTTTTCCEE-EEEEEEEEE
T ss_pred             CCcCcCcEEEEEEEEhhhcCeEE-EEEeEEEEE
Confidence            7999999999999999  99885 588888753

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.52  E-value=1.2e-13  Score=120.95  Aligned_cols=148  Identities=15%  Similarity=0.112  Sum_probs=92.1

Q ss_pred             CCc-cEEEecccccccc---------ce----EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecC
Q psy18191         62 PKP-ICLRFQDLLPQSK---------QG----LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGD  127 (238)
Q Consensus        62 ~~~-~~~w~~~~~~~~~---------~g----~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~  127 (238)
                      |.| .+.|++++.....         .|    ...|.+..+..+| |.|+|.+.+...  ....        .   ....
T Consensus       248 P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g--~~~~--------~---~~l~  313 (523)
T 2rcj_C          248 PQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS--NTKV--------D---KRVE  313 (523)
T ss_pred             CCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCC--Ccce--------E---EecC
Confidence            456 7999999864321         12    1256777777788 888887776432  1111        0   1111


Q ss_pred             CccCCEE-EeCCCceE-EeCCCcEEEEEEEeeeCC----CEEEEEeCCEEeeccCCccEEEecCCcEEE--EEeecCCCC
Q psy18191        128 GYRVPRI-TEHPASAV-VPRHEPTTLNCKADGYPE----PRIEWYKDGSLVSAEIGSHRILLPAGSLFF--LSLVHGKKD  199 (238)
Q Consensus       128 v~~~P~i-~~~~~~~~-~~~G~~~~L~C~~~g~P~----p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~--~~vi~~v~~  199 (238)
                      +..+|.+ ...|.... +.+|+.+.|.|.+.|.|+    +.++|+|+|..+............++.+..  .+.|..+..
T Consensus       314 v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~  393 (523)
T 2rcj_C          314 PLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNW  393 (523)
T ss_pred             CCcCceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHh
Confidence            2234554 33444343 788999999999998754    489999999988753211122233444332  123566688


Q ss_pred             CCCeEEEEEEEeCCCceeEEEEEEE
Q psy18191        200 TDSGVYWCVARNELGFARSKNATLD  224 (238)
Q Consensus       200 ~d~G~Y~C~a~N~~G~~~s~~~~L~  224 (238)
                      +|+|.|+|.|.|..|... ....|.
T Consensus       394 ~d~G~Y~C~a~n~~~~~~-~~~~~~  417 (523)
T 2rcj_C          394 LDGKEYKCKVSNKALPAP-IEKTIS  417 (523)
T ss_pred             cCCCeEEEEEeCCCCCCc-eeEEEE
Confidence            999999999999887764 244444

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.52  E-value=4.3e-14  Score=95.69  Aligned_cols=85  Identities=26%  Similarity=0.418  Sum_probs=66.4

Q ss_pred             CCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        137 HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      .|....+.+|+++.|.|.+.|  .|.+.|+++|..+...   .+....++.|.    |..+..+|+|.|+|.|.|..|..
T Consensus         7 ~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~---~~~~~~~~~L~----i~~~~~~D~G~Y~C~a~n~~g~~   77 (95)
T 4hwu_A            7 QPEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPN---NRTVLIGEYLQ----IKGATPRDSGLYACTAARTVDSE   77 (95)
T ss_dssp             -CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCC---SSEEEETTEEE----ECSCCGGGCEEEEEEEECSSCEE
T ss_pred             CCCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCC---ceEEEeCCEEE----ECcCCcccCEEEEEEEccCCCcE
Confidence            456678899999999999987  5799999999988642   23334456665    56669999999999999999988


Q ss_pred             eEEEEEEEEccCCCC
Q psy18191        217 RSKNATLDVAGKIST  231 (238)
Q Consensus       217 ~s~~~~L~V~~~~~~  231 (238)
                      . ..+.|.|..+++.
T Consensus        78 ~-~~~~l~V~~~~~~   91 (95)
T 4hwu_A           78 T-WIFMVNVTDAAEN   91 (95)
T ss_dssp             E-EEEEEEECCC---
T ss_pred             E-EEEEEEEeCCccc
Confidence            6 5999999877654

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.52  E-value=3.7e-14  Score=95.54  Aligned_cols=87  Identities=21%  Similarity=0.315  Sum_probs=61.7

Q ss_pred             cCCEEEeCCCceE--EeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        130 RVPRITEHPASAV--VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       130 ~~P~i~~~~~~~~--~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      .||.|..++.+..  +.+|+++.|.|.+.+ |.|.+.|+|||..|..+ ....+...++...  +.|..+..+|+|.|+|
T Consensus         3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~-~~~~i~~~~~~~~--L~I~~v~~~D~G~Y~C   78 (91)
T 2lvc_A            3 MPVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEES-DFVVLENEGPHRR--LVLPATQPSDGGEFQC   78 (91)
T ss_dssp             CCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCC-SSCEEEEETTEEE--EEESSCCGGGCSEEEE
T ss_pred             CCcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeee-eeeeEEecCCeEE--EEeCCCChhhcEEEEE
Confidence            4666766555544  468999999999865 88999999999998764 3333433333222  2378889999999999


Q ss_pred             EEEeCCCceeEEEEEEEE
Q psy18191        208 VARNELGFARSKNATLDV  225 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V  225 (238)
                      .|.|.    . ..+.|.|
T Consensus        79 ~a~n~----~-~~~~ltV   91 (91)
T 2lvc_A           79 VAGDE----C-AYFTVTI   91 (91)
T ss_dssp             ECSSC----E-EEEEEEC
T ss_pred             EEcce----E-EEEEEEC
Confidence            98664    2 3666654

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.51  E-value=1.7e-13  Score=121.51  Aligned_cols=135  Identities=21%  Similarity=0.184  Sum_probs=90.6

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee-C
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY-P  159 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P  159 (238)
                      ..|.+.++..+|+|.|+|.+.+..  |..           ...+.+.+..+|.+...+....+.+|+.+.|.|.+.+. |
T Consensus        75 ~~L~I~~v~~~D~G~Y~C~~~n~~--~~~-----------~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~  141 (585)
T 2ocw_A           75 FVVNIAQLSQDDSGRYKCGLGINS--RGL-----------SFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENA  141 (585)
T ss_pred             EEEEECCCCcccCEEEEEEcccCC--CCc-----------eEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCC
Confidence            357788888888899887665532  111           11122335678888877888999999999999999865 4


Q ss_pred             CCEEEEEeCCEEee----cc-------CCccEEEecCCc--EEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191        160 EPRIEWYKDGSLVS----AE-------IGSHRILLPAGS--LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA  226 (238)
Q Consensus       160 ~p~i~W~~~g~~l~----~~-------~~~~~~~~~~~~--l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~  226 (238)
                      .+.+.|++++..+.    ..       ...+.....++.  ....+.|..+..+|+|.|+|.|.|..|... ..+.|.|.
T Consensus       142 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-~~~~l~V~  220 (585)
T 2ocw_A          142 QKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNK-KNADLQVL  220 (585)
T ss_pred             CccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCcccc-ceEEEEEc
Confidence            57899999875321    10       011111122221  011122566699999999999999999986 59999997


Q ss_pred             cCC
Q psy18191        227 GKI  229 (238)
Q Consensus       227 ~~~  229 (238)
                      .++
T Consensus       221 ~~~  223 (585)
T 2ocw_A          221 KPE  223 (585)
T ss_pred             cCC
Confidence            654

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.51  E-value=6.3e-14  Score=95.33  Aligned_cols=87  Identities=23%  Similarity=0.289  Sum_probs=66.6

Q ss_pred             CCEEEe-CCCceEEeCCCcEEEEEEEe-eeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        131 VPRITE-HPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       131 ~P~i~~-~~~~~~~~~G~~~~L~C~~~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      +|.+.. .+....+.+|+++.|.|.+. |.|.|.+.|++++.....   .. ....++.|.    |..+..+|+|.|.|.
T Consensus         9 ~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~---~~-~~~~~~~L~----i~~v~~~D~G~Y~C~   80 (98)
T 1gl4_B            9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP---SR-AMDFNGILT----IRNVQPSDAGTYVCT   80 (98)
T ss_dssp             CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCC---TT-EEEETTEEE----ECSCCGGGCEEEEEE
T ss_pred             CcEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCC---ce-eecCCCEEE----EeCCChhhCEEEEEE
Confidence            444444 35677899999999999998 689999999997543332   12 223456665    566699999999999


Q ss_pred             EEeCCCceeEEEEEEEEc
Q psy18191        209 ARNELGFARSKNATLDVA  226 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~  226 (238)
                      |.|..|... ..+.|.|.
T Consensus        81 a~n~~g~~~-~~~~l~V~   97 (98)
T 1gl4_B           81 GSNMFAMDQ-GTATLHVQ   97 (98)
T ss_dssp             EECSSCEEE-EEEEEEEC
T ss_pred             ecCCCCccc-cEEEEEEe
Confidence            999999986 58899885

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.50  E-value=2.4e-13  Score=92.90  Aligned_cols=90  Identities=18%  Similarity=0.220  Sum_probs=68.6

Q ss_pred             cCCEEEeCCCc-eEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCC--cEEEEEeecCCCCCCCeEEE
Q psy18191        130 RVPRITEHPAS-AVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAG--SLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       130 ~~P~i~~~~~~-~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~--~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      .+|.|...+.+ ..+.+|+++.|.|.+. .|.|.+.|+++|..+... ....+...+.  .|.    |..+..+|+|.|+
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~-~~~~~~~~~~~~~L~----I~~~~~~D~G~Y~   79 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPS-TKYIFEHKGCQRILF----INNCQMTDDSEYY   79 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCB-TTEEEEEETTEEEEE----EEEECTTTCCEEE
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCC-CCEEEEecCCEEEEE----EcCCCcCcCEEEE
Confidence            57888887776 6889999999999998 799999999999888653 2222322222  244    4455999999999


Q ss_pred             EEEEeCCCceeEEEEEEEEccCCC
Q psy18191        207 CVARNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       207 C~a~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      |.|    |... ..+.|.|..+|.
T Consensus        80 C~a----g~~~-~~~~l~V~~~P~   98 (100)
T 2yuv_A           80 VTA----GDEK-CSTELFVRSGPS   98 (100)
T ss_dssp             EEE----TTEE-EEEEEEECCSCC
T ss_pred             EEE----CCce-EEEEEEEecCCC
Confidence            999    7775 489999988763

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.50  E-value=1.4e-13  Score=113.48  Aligned_cols=146  Identities=12%  Similarity=0.139  Sum_probs=87.7

Q ss_pred             CCccEEEecccccccc-----------------------ceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCc
Q psy18191         62 PKPICLRFQDLLPQSK-----------------------QGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSL  118 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~-----------------------~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~  118 (238)
                      |.+.+.||+++.+...                       .+...|.+.++..+|+|.|+|.+.+.  .|..... .....
T Consensus        32 p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~--~~~~~~~-~~~~~  108 (327)
T 2wng_A           32 PVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFRK--GSPDTEF-KSGAG  108 (327)
T ss_dssp             SCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEEEEEEES--STTCEEE-EECCC
T ss_pred             CCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEEEEEeecC--CCcceeE-eecCc
Confidence            5678999998753210                       11235778888888999999776553  1211110 00011


Q ss_pred             ceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC--EEEEEeCCEEeeccCCccEEEe--cCCcEEE--EE
Q psy18191        119 PLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP--RIEWYKDGSLVSAEIGSHRILL--PAGSLFF--LS  192 (238)
Q Consensus       119 ~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~~~~~~--~~~~l~~--~~  192 (238)
                      ..+.  +.....+|.+. .+ ...+.+|+.+.|.|.+.|.|+|  .+.|+++|..+...  ......  .++.+.+  .+
T Consensus       109 ~~l~--V~~~p~~p~i~-~~-~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~--~~~~~~~~~~~~~~~~s~L  182 (327)
T 2wng_A          109 TELS--VRAKPSAPVVS-GP-AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDF--QTNVDPVGESVSYSIHSTA  182 (327)
T ss_dssp             EEEE--EEBCCCCCEEE-CC-SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCE--EEEEECSSCCSCEEEEEEE
T ss_pred             EEEE--EEecCCCceee-cc-ccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEcccc--ccccccccCCCceEEEEEE
Confidence            1111  11122344554 33 3667899999999999999876  89999999988743  111111  2233332  22


Q ss_pred             eecCCCCCCCeEEEEEEEeCCCce
Q psy18191        193 LVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       193 vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      .|.....+|.|.|+|.|.|..|..
T Consensus       183 ~i~~~~~d~~g~Y~C~a~n~~~~~  206 (327)
T 2wng_A          183 KVVLTREDVHSQVICEVAHVTLQG  206 (327)
T ss_dssp             EEECCTTGGGCEEEEEEECTTSCS
T ss_pred             EEechhcCcCceEEEEEeccccCC
Confidence            244556666899999999998763

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.50  E-value=2.1e-13  Score=108.74  Aligned_cols=145  Identities=12%  Similarity=0.175  Sum_probs=84.9

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceec------------CCccCCEEEeCCCceEEeCCCcE
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHG------------DGYRVPRITEHPASAVVPRHEPT  149 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~------------~v~~~P~i~~~~~~~~~~~G~~~  149 (238)
                      .|.|.++.++|+|.|.|.+.+....+..  ....  ...+. +..            ....+|.+...|....+.+|+++
T Consensus        82 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~--~~~~--~~~L~-V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v  156 (256)
T 3umt_A           82 YLELRSLTSEDSAVYYCARDDRYPAWFA--YWGQ--GTTVT-VSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERV  156 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEECCSTTCCSC--EECC--CEEEE-ECC---------------CCCCEEEECSEEEECTTCCE
T ss_pred             EEEECCCCcccCEEEEEEEccCCCcccc--EECC--CEEEE-EcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCE
Confidence            4788888899999999776653110000  0000  00111 000            00126777777888999999999


Q ss_pred             EEEEEEeeeCCCEEEEEeC--CEEee---cc-------CCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        150 TLNCKADGYPEPRIEWYKD--GSLVS---AE-------IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       150 ~L~C~~~g~P~p~i~W~~~--g~~l~---~~-------~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      .|.|.+.+.|.|.+.|+++  +..+.   ..       ...+......+.. ..+.|..++.+|+|.|.|.|.|..+...
T Consensus       157 ~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~~~~~~~~~f  235 (256)
T 3umt_A          157 SITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSD-YSLTISSLESEDFVDYYCLQYASSPPTF  235 (256)
T ss_dssp             EEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTE-EEEEECSCCGGGCSEEEEEECSSSSCEE
T ss_pred             EEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCE-EEEEECCCChhHCEEEEEEEeeCCCcEE
Confidence            9999999999999999984  22211   00       0111111111221 1123778899999999999999766554


Q ss_pred             EEEEEEEEccCCCCC
Q psy18191        218 SKNATLDVAGKISTA  232 (238)
Q Consensus       218 s~~~~L~V~~~~~~~  232 (238)
                      .....|.|.+.+...
T Consensus       236 g~gt~L~V~~~~~~~  250 (256)
T 3umt_A          236 GGGTKLEIKRAAALE  250 (256)
T ss_dssp             CCCEEEEEC------
T ss_pred             CCCEEEEEECCCccc
Confidence            456788887765443

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=3.3e-14  Score=100.15  Aligned_cols=98  Identities=14%  Similarity=0.158  Sum_probs=69.7

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeee---CCCEEEEEeCCE-EeeccC-CccEEE--ecC--CcEEEEEeecCCCCC
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGY---PEPRIEWYKDGS-LVSAEI-GSHRIL--LPA--GSLFFLSLVHGKKDT  200 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~---P~p~i~W~~~g~-~l~~~~-~~~~~~--~~~--~~l~~~~vi~~v~~~  200 (238)
                      ..+.|...|.++.+.+|+++.|.|.+.|.   |.|.|.|+|+.. .+.... ....+.  ...  ......+.|..++..
T Consensus        11 ~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   90 (118)
T 2edn_A           11 PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLG   90 (118)
T ss_dssp             CSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTT
T ss_pred             CcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChh
Confidence            34567777889999999999999999875   789999999742 111110 111111  111  111233348888999


Q ss_pred             CCeEEEEEEEeCCCceeEEEEEEEEccC
Q psy18191        201 DSGVYWCVARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       201 d~G~Y~C~a~N~~G~~~s~~~~L~V~~~  228 (238)
                      |+|.|+|.|.|..|... ..+.|.|..+
T Consensus        91 D~G~Y~Cevsn~~g~~s-~~~~L~V~~~  117 (118)
T 2edn_A           91 DRGYYRLEVKAKDTCDS-CGFNIDVEAP  117 (118)
T ss_dssp             TCSCEEEEEECSSCEEE-EEECCEEECC
T ss_pred             hCEEEEEEEEEcCCcEE-EEEEEEEEcC
Confidence            99999999999999985 5999999874

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.50  E-value=2.8e-13  Score=108.25  Aligned_cols=139  Identities=14%  Similarity=0.215  Sum_probs=85.7

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCC-ceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeC
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGL-PLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYP  159 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~-y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P  159 (238)
                      ..|.|.++.++|+|.|.|.+.+..  |. +....       ...+.+.+..+|.+...|..+.+.+|+++.|.|.+.+.|
T Consensus        79 ~~L~I~~v~~~DsG~Y~C~~~n~~--g~~~~~~~-------~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~  149 (256)
T 1nqb_A           79 AYMQLSSLTSEDSAVYYCARYDYY--GSSYFDYW-------GQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSI  149 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCTT--SSSSCSEE-------CCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCC
T ss_pred             EEEEECcCChhhCEEEEEEEeecc--CccceeEE-------cCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcc
Confidence            357788888888888887776631  21 00000       011112244567777777788899999999999999988


Q ss_pred             CC-----EEEEEe--CCEEeec----------cCCccEEE-ecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEE
Q psy18191        160 EP-----RIEWYK--DGSLVSA----------EIGSHRIL-LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNA  221 (238)
Q Consensus       160 ~p-----~i~W~~--~g~~l~~----------~~~~~~~~-~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~  221 (238)
                      .|     .+.|+|  +|..+..          ....+... ......  .+.|..++.+|+|.|.|.|.|..+.......
T Consensus       150 ~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt  227 (256)
T 1nqb_A          150 VHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDF--TLKISRVEAEDLGVYYCFQGSHVPYTFGGGT  227 (256)
T ss_dssp             BCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEE--EEEESSCCGGGCEEEEEEECSSSSCEECCCE
T ss_pred             cccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEE--EEEECCCChHHCEEEEEEEccCCceEECCCE
Confidence            76     999999  5654320          00111111 111211  2237888999999999999996544333455


Q ss_pred             EEEEccCCC
Q psy18191        222 TLDVAGKIS  230 (238)
Q Consensus       222 ~L~V~~~~~  230 (238)
                      .|.|.++..
T Consensus       228 ~l~V~~~~~  236 (256)
T 1nqb_A          228 KLEIKRAAA  236 (256)
T ss_dssp             EEEECC---
T ss_pred             EEEEECCCC
Confidence            788865543

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.50  E-value=4.6e-14  Score=112.88  Aligned_cols=126  Identities=18%  Similarity=0.177  Sum_probs=77.5

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEE---eee
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKA---DGY  158 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~---~g~  158 (238)
                      .|.+.++..+|+|.|+|.+.+....+  .         ....+.+.+  .|   ..|....+.+|+.+.|.|.+   .+.
T Consensus        85 ~L~I~~v~~~D~G~Y~C~~~~~~~~~--~---------~~~~~~l~V--~~---~~p~~~~v~~G~~v~L~C~~~~~~~~  148 (268)
T 3mj6_A           85 SLLLQDVQKADEGIYTCEIRLKNESM--V---------MKKPVELWV--LP---EEPRDLRVRVGDTTQMRCSIQSTEEK  148 (268)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTCCC--E---------EEEEEEEEE--EC---CCCSEEEEETTCCEEECCBCEESSSS
T ss_pred             EEEECCCCHhHCEEEEEEEEecCCcc--e---------EEEEEEEEE--ec---cCCCccccccCCcEEEEEEecCCCCC
Confidence            36667777777777776654421111  0         001111101  11   23456788999999999999   677


Q ss_pred             CCCEEEEEeC-CEEee------c------------cCC-ccEEE-----ecCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191        159 PEPRIEWYKD-GSLVS------A------------EIG-SHRIL-----LPAGSLFFLSLVHGKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       159 P~p~i~W~~~-g~~l~------~------------~~~-~~~~~-----~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~  213 (238)
                      |.|.+.|+++ +..+.      .            ... .+...     ...+.|.    |..+..+|+|.|+|.|.|..
T Consensus       149 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~----i~~v~~~D~G~Y~C~a~n~~  224 (268)
T 3mj6_A          149 RVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIK----LQTVKESDQGIYTCSIYVGK  224 (268)
T ss_dssp             CCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEE----ECSCCGGGCEEEEEEEEETT
T ss_pred             CccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEE----ECcCChhhCeEEEEEEEcCC
Confidence            9999999984 32110      0            000 01111     1234454    66679999999999999999


Q ss_pred             CceeEEEEEEEEccC
Q psy18191        214 GFARSKNATLDVAGK  228 (238)
Q Consensus       214 G~~~s~~~~L~V~~~  228 (238)
                      |... ..+.|.|...
T Consensus       225 g~~~-~~~~l~V~~~  238 (268)
T 3mj6_A          225 LESR-KTIVLHVVQD  238 (268)
T ss_dssp             EEEE-EEEEEEEECC
T ss_pred             ceEE-EEEEEEEEcC
Confidence            9986 5999998443

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.50  E-value=2.6e-14  Score=110.52  Aligned_cols=126  Identities=12%  Similarity=0.171  Sum_probs=78.2

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEee-eC
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADG-YP  159 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g-~P  159 (238)
                      ..|.|.++..+|+|.|+|.+.+..  |.   .....  ..+.  ......+|.+...+.......|+.+.|.|.+.| .|
T Consensus        71 ~~L~I~~v~~~D~G~Y~C~~~~~~--~~---~~~~~--~~l~--V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p  141 (213)
T 3d9a_L           71 FTLSINSVETEDFGMYFCQQSNSW--PY---TFGGG--TKLE--IKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYP  141 (213)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSS--SC---EECCC--EEEE--ECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBS
T ss_pred             EEEEECCCChhhCEEEEEeeecCC--cc---eeCCC--EEEE--EecCCCCceeEeECCChhhcCCCcEEEEEEEeeecC
Confidence            368888999999999998776632  11   00000  0111  111234787776444433457899999999988 56


Q ss_pred             CC-EEEEEeCCEEeeccCCccEE---EecCCcE--EEEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        160 EP-RIEWYKDGSLVSAEIGSHRI---LLPAGSL--FFLSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       160 ~p-~i~W~~~g~~l~~~~~~~~~---~~~~~~l--~~~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      .| .+.|+++|..+.... ....   ...++..  ...+.|..+..+|.|.|+|.|.|.....
T Consensus       142 ~~~~v~W~k~g~~~~~~~-~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          142 KDINVKWKIDGSERQNGV-LNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             SCCEEEEEETTEEECTTE-EEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             CceEEEEEcCCCcCccee-eecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence            65 899999999886420 0101   0122221  1122355668899999999999987665

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=5.5e-14  Score=97.05  Aligned_cols=95  Identities=17%  Similarity=0.204  Sum_probs=70.6

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      .+|.|...+.+..+.+|+++.|.|.+.+.|. +.+.|+|+|..+..+ ....+.. ++.... +.|..+..+|+|.|+|.
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~-~r~~~~~-~~~~~~-L~I~~v~~~D~G~Y~C~   83 (104)
T 2eny_A            7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSS-SRFQATR-QGRKYI-LVVREAAPSDAGEVVFS   83 (104)
T ss_dssp             CCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBC-SSCEEEE-ETTEEE-EEECSCCTTTCSCEEEE
T ss_pred             CCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCC-CCEEEEE-cCCEEE-EEECCCCHHHCEEEEEE
Confidence            3556777788999999999999999998875 489999999988753 2233332 332221 23788899999999998


Q ss_pred             EEeCCCceeEEEEEEEEccCCCCC
Q psy18191        209 ARNELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~~~~~~  232 (238)
                      |.|    .. ..+.|.|..+|..+
T Consensus        84 a~~----~~-~~a~L~V~~~p~~~  102 (104)
T 2eny_A           84 VRG----LT-SKASLIVRERSGPS  102 (104)
T ss_dssp             ETT----EE-EEECEEEECCCSSC
T ss_pred             ECC----ee-EEEEEEEeCCCcCC
Confidence            854    44 48899998877544

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.50  E-value=1.1e-13  Score=95.53  Aligned_cols=92  Identities=18%  Similarity=0.216  Sum_probs=69.1

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      ..+|.|...+.++.+.+|+++.|.|.+.+.|.| +.|++++..+... ....+.. ++.... +.|..+..+|+|.|+|.
T Consensus         6 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~-~~~~~~~-~~~~~~-L~I~~v~~~D~G~Y~C~   81 (106)
T 2dlt_A            6 SGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPS-KRITISH-VGRFHK-LVIDDVRPEDEGDYTFV   81 (106)
T ss_dssp             CCCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCC-SSCEEEE-ETTEEE-EEESSCCTTTCSCEEEE
T ss_pred             CCCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCC-CCEEEEE-eCCEEE-EEECCCCcCCCEEEEEE
Confidence            357889988999999999999999999999888 9999999888653 2223322 332211 23788899999999999


Q ss_pred             EEeCCCceeEEEEEEEEcc
Q psy18191        209 ARNELGFARSKNATLDVAG  227 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~  227 (238)
                      |.|..+.   ..+.|.|..
T Consensus        82 a~n~~~~---~~~~l~V~~   97 (106)
T 2dlt_A           82 PDGYALS---LSAKLNFLE   97 (106)
T ss_dssp             EETSCCC---CCBCEEEEC
T ss_pred             EccCCce---EEEEEEEEE
Confidence            9998333   256666654

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.50  E-value=1.7e-12  Score=100.28  Aligned_cols=99  Identities=30%  Similarity=0.446  Sum_probs=77.7

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEe-cCCcEEEEEeecCCCC-CCCeEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL-PAGSLFFLSLVHGKKD-TDSGVYWC  207 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~l~~~~vi~~v~~-~d~G~Y~C  207 (238)
                      .+|.|...|.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+........... .++...+  .|..+.. +|+|.|+|
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L--~i~~v~~~~d~G~Y~C   82 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL--RIEPVRAGRDDAPYEC   82 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEE--EESSCCTTTTCSEEEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEE--EEEecCCCCcCceEEE
Confidence            689999999999999999999999999999999999999998874322222222 2332222  2677798 99999999


Q ss_pred             EEEeCCCceeEEEEEEEEccCCC
Q psy18191        208 VARNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      .|.|..|...+..+.|.|...+.
T Consensus        83 ~~~n~~g~~~~~~~~l~V~~~~~  105 (212)
T 2yd1_A           83 VAENGVGDAVSADATLTIYEGDK  105 (212)
T ss_dssp             EEECSSSCEEEEEEEEEEECTTC
T ss_pred             EEEeCCCCeEEeeEEEEEecccC
Confidence            99999999434688999977643

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1.9e-14  Score=98.59  Aligned_cols=92  Identities=16%  Similarity=0.171  Sum_probs=69.8

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCC---ccEEEecCCcEEEEEeecCCCCCCCeEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---SHRILLPAGSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~---~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      .+|.|...+.+..+.+|+++.|.|.+.+.| |.+.|+++|..+.....   ...+. .++.... +.|..+..+|+|.|+
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~-~~~~~~~-L~I~~~~~~D~G~Y~   83 (101)
T 2edk_A            7 GPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFK-KDGKRHI-LIFSDVVQEDRGRYQ   83 (101)
T ss_dssp             CCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEE-ECSSEEE-EECSSCCGGGCSBEE
T ss_pred             CCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEE-ECCCEEE-EEECCCChhhCEEEE
Confidence            567888888889999999999999999999 99999999998875421   12333 3333222 237888999999999


Q ss_pred             EEEEeCCCceeEEEEEEEEccCC
Q psy18191        207 CVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       207 C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      |.|.|    .. ..+.|.|.++|
T Consensus        84 C~a~n----~~-~~~~l~V~~~P  101 (101)
T 2edk_A           84 VITNG----GQ-CEAELIVEEKQ  101 (101)
T ss_dssp             EECSS----CE-ECCBEEEECCC
T ss_pred             EEEcC----Cc-EEEEEEEeCCC
Confidence            99988    22 36778887654

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.49  E-value=1.3e-12  Score=112.24  Aligned_cols=154  Identities=12%  Similarity=0.072  Sum_probs=100.8

Q ss_pred             cEEEeccccccccce------EEEEEcCCCCCCCCCceEEEeCCCcc-cCCceEEeCCCCcceecceecCCccCCEEEeC
Q psy18191         65 ICLRFQDLLPQSKQG------LMYLVGSQASPDYPNRFSLCNNKTWQ-KGLPLKKYHPPSLPLFPGVHGDGYRVPRITEH  137 (238)
Q Consensus        65 ~~~w~~~~~~~~~~g------~~~l~~~~~~~~~~g~y~~~~~~~~~-~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~  137 (238)
                      .+.||+++..+....      ...|.+..+..+|+|.|+|.+.+... .+...- ........+. +......+|.+.. 
T Consensus       120 ~v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~-~~~s~~~~l~-v~~~~~~~p~~~~-  196 (450)
T 1z7z_I          120 TVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELF-ENTSAPYQLQ-TFVLPATPPQLVS-  196 (450)
T ss_dssp             EEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEE-EEECCCEECE-ECCCCSSCCEEEC-
T ss_pred             EEEEeeCCEEeecccccccccceEEEEEeeccccCceEEEEEEcccCCCCceEE-eeccCcccee-eeccCCCCCEecC-
Confidence            889999987554321      24677788889999999988776432 111110 0000111111 1110124566543 


Q ss_pred             CCceEEeCCCcEEEEEEEeee-C--CCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCe--EEEEEEEeC
Q psy18191        138 PASAVVPRHEPTTLNCKADGY-P--EPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSG--VYWCVARNE  212 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~-P--~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G--~Y~C~a~N~  212 (238)
                        ...+.+|+.+.|.|.+.|. |  .+.+.|++++..+..     ......+.+.+...+ .+..+|+|  .|+|.|.|.
T Consensus       197 --~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~-----~~~~~~~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~  268 (450)
T 1z7z_I          197 --PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP-----TVTYGNDSFSAKASV-SVTAEDEGTQRLTCAVILG  268 (450)
T ss_dssp             --CSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC-----EEEEETTEEEEEEEE-ECCGGGCEEEEEEEEEEET
T ss_pred             --ceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc-----eEEecCCceeEEEEE-EeEhhhCCcEEEEEEEccC
Confidence              2678999999999999998 7  789999999988763     233333444333222 45899999  999999999


Q ss_pred             CCceeEEEEEEEEccCCC
Q psy18191        213 LGFARSKNATLDVAGKIS  230 (238)
Q Consensus       213 ~G~~~s~~~~L~V~~~~~  230 (238)
                      .|... ..+.|.|...+.
T Consensus       269 ~g~~~-~~~~l~V~~~~~  285 (450)
T 1z7z_I          269 NQSQE-TLQTVTIYSFPA  285 (450)
T ss_dssp             TEEEE-EEEEEEEECCCC
T ss_pred             CccEE-EEEEEEEecCCC
Confidence            99986 488999887443

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.49  E-value=2.3e-13  Score=108.32  Aligned_cols=143  Identities=17%  Similarity=0.199  Sum_probs=84.7

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceeccee----------cCCccCCEEEeCCCceEEeCCCcEEE
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVH----------GDGYRVPRITEHPASAVVPRHEPTTL  151 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~----------~~v~~~P~i~~~~~~~~~~~G~~~~L  151 (238)
                      .|.|.++.++|+|.|.|.+.+...  ...   .  ....+....          ..+..+|.+...|....+.+|+++.|
T Consensus        81 ~L~I~~v~~~DsG~Y~C~~~~~~~--~~~---~--~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L  153 (253)
T 3uzq_A           81 YLHLSSLTSGDTAVYYCSRGWEGF--AYW---G--QGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATI  153 (253)
T ss_dssp             EEEECSCCGGGCEEEEEEECSSSC--CEE---C--CCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEE
T ss_pred             EEEeCCCCcccCEEEEEEEeeCCc--cEE---C--CCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEE
Confidence            478888899999999977765211  100   0  000111000          01223567777778899999999999


Q ss_pred             EEEEeeeCCC----EEEEEeC--CEEee---cc-------CCccEEE-ecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        152 NCKADGYPEP----RIEWYKD--GSLVS---AE-------IGSHRIL-LPAGSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       152 ~C~~~g~P~p----~i~W~~~--g~~l~---~~-------~~~~~~~-~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      .|.+.+.|.|    .+.|+++  +..+.   ..       ...+... ...+..  .+.|..++.+|+|.|.|.|.|..+
T Consensus       154 ~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~L~I~~v~~~DsG~Y~C~~~n~~~  231 (253)
T 3uzq_A          154 SCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDF--TLTINPVEADDVATYFCQRSNEVP  231 (253)
T ss_dssp             EEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEE--EEEESSCCGGGCEEEEEEECSSSS
T ss_pred             EEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEE--EEEECCCCHHHCEEEEEEEccCCC
Confidence            9999998887    8999984  22111   00       0011111 112221  223788899999999999999766


Q ss_pred             ceeEEEEEEEEccCCCCCC
Q psy18191        215 FARSKNATLDVAGKISTAT  233 (238)
Q Consensus       215 ~~~s~~~~L~V~~~~~~~~  233 (238)
                      .....-..|.|.+.+..+.
T Consensus       232 ~~fg~gt~l~v~~~~~~~~  250 (253)
T 3uzq_A          232 WTFGGGTKLEIKRPLEHHH  250 (253)
T ss_dssp             CCBCCCEEEEECCC-----
T ss_pred             cEECCCEEEEEcCCCCCcc
Confidence            5544466788887766554

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.48  E-value=2.9e-13  Score=93.34  Aligned_cols=96  Identities=17%  Similarity=0.181  Sum_probs=68.3

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCE-EeeccC-----CccEEEe-c-CCcEEEEEeecCCCCCC
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGS-LVSAEI-----GSHRILL-P-AGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~-~l~~~~-----~~~~~~~-~-~~~l~~~~vi~~v~~~d  201 (238)
                      .+|.+...+.++.+.+|+++.|.|.+.+.|.|.+.|++++. .+....     ..+.... . .+..  .+.|..++.+|
T Consensus         5 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--~L~I~~v~~~D   82 (108)
T 3m45_A            5 GSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHEL--SISVSDVSLSD   82 (108)
T ss_dssp             ---CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEE--EEEECSCCGGG
T ss_pred             cCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcE--EEEECCCChhH
Confidence            45666667788999999999999999999999999999875 332210     1122211 1 1122  22377889999


Q ss_pred             CeEEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        202 SGVYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       202 ~G~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      +|.|+|.|.| .|... ..+.|.|..+|
T Consensus        83 ~G~Y~C~~~n-~~~~~-~~~~L~V~~~P  108 (108)
T 3m45_A           83 EGQYTCSLFT-MPVKT-SKAYLTVLGVP  108 (108)
T ss_dssp             CEEEEEEECS-SSCEE-EEEEEEEECCC
T ss_pred             CeEEEEEEEc-CCCcE-EEEEEEEEcCC
Confidence            9999999999 88875 59999998754

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.9e-14  Score=97.64  Aligned_cols=86  Identities=24%  Similarity=0.458  Sum_probs=68.3

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .+|.+...|....+.+|+.+.|.|.+.|.|.|.+.|++++..+...        .++.|.    |..+..+|+|.|+|.|
T Consensus         9 ~~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~--------~~~~L~----i~~v~~~d~G~Y~C~a   76 (96)
T 2ens_A            9 EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP--------PSPVLI----LPEIGPQDQGTYSCVA   76 (96)
T ss_dssp             CSCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSC--------CCSEEE----EESCCTTTCEEEECEE
T ss_pred             CCCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCC--------CCCEEE----ECCCCcccCEEEEEEE
Confidence            5677878888889999999999999999999999999999877642        234455    5566999999999999


Q ss_pred             EeCCCc-eeEEEEEEEEcc
Q psy18191        210 RNELGF-ARSKNATLDVAG  227 (238)
Q Consensus       210 ~N~~G~-~~s~~~~L~V~~  227 (238)
                      .|..|. ..+..+.|.|.+
T Consensus        77 ~n~~~~~~~s~~~~v~V~~   95 (96)
T 2ens_A           77 THSSHGPQESRAVSISIIE   95 (96)
T ss_dssp             CCSSCCCEECCCEEEEECC
T ss_pred             EeCCCCcEEEEEEEEEEeC
Confidence            996544 334567777754

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.48  E-value=9e-13  Score=100.86  Aligned_cols=110  Identities=14%  Similarity=0.134  Sum_probs=66.0

Q ss_pred             EEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCcc---CCEEEeCCCceEEeCCC-cEEEEEEEeee
Q psy18191         83 LVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYR---VPRITEHPASAVVPRHE-PTTLNCKADGY  158 (238)
Q Consensus        83 l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~---~P~i~~~~~~~~~~~G~-~~~L~C~~~g~  158 (238)
                      |.|.++...|+|.|.|...+..  |           .....+.+.|..   +|.+...+  .....|. .+.|.|.+.|.
T Consensus        72 L~I~~v~~~D~G~Y~C~~~~~~--~-----------~~~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~  136 (193)
T 2if7_A           72 LQLSNLKMEDTGSYRAQISTKT--S-----------AKLSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDA  136 (193)
T ss_dssp             EEECSCCGGGCEEEEEEEECSS--C-----------EEEEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESC
T ss_pred             EEECCCCcccCceEEEEEEecC--C-----------CeEEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecC
Confidence            5666777777777776654421  1           111111111222   34554433  2233465 89999999985


Q ss_pred             -CCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCC-CCCeEEEEEEEeCCCceeEEEEE
Q psy18191        159 -PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKD-TDSGVYWCVARNELGFARSKNAT  222 (238)
Q Consensus       159 -P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~-~d~G~Y~C~a~N~~G~~~s~~~~  222 (238)
                       |.|.+.|+++|..+..          ++.|.+...    .. .|+|.|+|.|.|.+|... ..+.
T Consensus       137 ~p~p~i~W~~~g~~l~~----------~~~l~i~~~----~~~~d~G~Y~C~a~N~~g~~s-~~~~  187 (193)
T 2if7_A          137 DDNVSFRWEALGNTLSS----------QPNLTVSWD----PRISSEQDYTCIAENAVSNLS-FSVS  187 (193)
T ss_dssp             CTTCEEEEEETTEEEES----------SSEEEEEEC----TTTCSCCEEEEEEEETTEEEE-EEEE
T ss_pred             CCceEEEEEeCCEEcCC----------CCeEEEEec----cCcCCCCcEEEEEECCCCccc-cccc
Confidence             5899999999987642          233444322    33 489999999999999884 3443

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.48  E-value=7.4e-13  Score=102.44  Aligned_cols=98  Identities=29%  Similarity=0.419  Sum_probs=76.0

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCC-CCCCCeEEE
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGK-KDTDSGVYW  206 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v-~~~d~G~Y~  206 (238)
                      +..+|.|...|.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... ........++.... +.|..+ +.+|+|.|+
T Consensus         3 ~~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~-~~~~~~~~~~~~~~-L~i~~v~~~~d~G~Y~   80 (212)
T 2yd6_A            3 GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQ-RFEVIEFDDGSGSV-LRIQPLRTPRDEAIYE   80 (212)
T ss_dssp             -CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCT-TEEEEEEGGGTEEE-EEECSCCTTTTCEEEE
T ss_pred             CCCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCC-ceeEEEEcCCCceE-EEEeccCCCCCCeEEE
Confidence            347899999999999999999999999999999999999999988743 11122222222222 236777 489999999


Q ss_pred             EEEEeCCCceeEEEEEEEEccC
Q psy18191        207 CVARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       207 C~a~N~~G~~~s~~~~L~V~~~  228 (238)
                      |.|.|..|... ..+.|.|...
T Consensus        81 C~a~n~~g~~~-~~~~l~V~~~  101 (212)
T 2yd6_A           81 CVASNNVGEIS-VSTRLTVLRE  101 (212)
T ss_dssp             EEEEETTEEEE-EEEEEEEECG
T ss_pred             EEEEcCCCcEE-EEEEEEEecc
Confidence            99999999985 5889999765

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.48  E-value=1.4e-14  Score=119.83  Aligned_cols=152  Identities=14%  Similarity=0.137  Sum_probs=98.8

Q ss_pred             cCCCccEEEeccccc--cccc---eE----EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCcc
Q psy18191         60 FYPKPICLRFQDLLP--QSKQ---GL----MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYR  130 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~--~~~~---g~----~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~  130 (238)
                      ..+.+.+.|++++..  ....   .+    ..|.+.++...|+|.|+|.+.+..  |.....           +.+.+..
T Consensus        51 ~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~--g~~~~~-----------~~l~V~~  117 (339)
T 3o4o_C           51 VSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNAS--YCDKMS-----------IELRVFE  117 (339)
T ss_dssp             TSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEEEECCEEETT--EEEEEE-----------EEEEEEC
T ss_pred             CCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEEEEEEEECCc--ceEEEE-----------EEEEEEc
Confidence            356778999998874  3221   11    257788899999999998766532  211111           1111222


Q ss_pred             CCEEE--eCCCceEEeCCCcEEEEEE-----EeeeCCCEEEEEeCCEEeeccCCccEEEecC-CcEEEEEeecCCCCCCC
Q psy18191        131 VPRIT--EHPASAVVPRHEPTTLNCK-----ADGYPEPRIEWYKDGSLVSAEIGSHRILLPA-GSLFFLSLVHGKKDTDS  202 (238)
Q Consensus       131 ~P~i~--~~~~~~~~~~G~~~~L~C~-----~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~-~~l~~~~vi~~v~~~d~  202 (238)
                      +|...  .......+.+|+.+.|.|.     +.|.|.|.+.|+++|..+... ........+ +.|.    |..+..+|+
T Consensus       118 ~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~-~~~~~~~~~~~~L~----i~~v~~~d~  192 (339)
T 3o4o_C          118 NTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKD-NEKFLSVRGTTHLL----VHDVALEDA  192 (339)
T ss_dssp             SCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTT-CSSEEECTTSSEEE----ESSCCGGGC
T ss_pred             CCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCC-CceeEEcCCcceEE----EcccCHhhC
Confidence            22210  1112346789999999999     889999999999999888753 222332222 3454    566699999


Q ss_pred             eEEEEEEEeCCCc---eeEEEEEEEEccCC
Q psy18191        203 GVYWCVARNELGF---ARSKNATLDVAGKI  229 (238)
Q Consensus       203 G~Y~C~a~N~~G~---~~s~~~~L~V~~~~  229 (238)
                      |.|+|.|.|..|.   ..+..+.|.|...+
T Consensus       193 G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~  222 (339)
T 3o4o_C          193 GYYRCVLTFAHEGQQYNITRSIELRIKKKK  222 (339)
T ss_dssp             EEEEEEEECCBTTBCCEEEEEEEEEEECCC
T ss_pred             eEEEEEEEECCCCeEEEEEEEEEEEEEcCC
Confidence            9999999999884   22358888887543

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.48  E-value=5e-13  Score=106.18  Aligned_cols=137  Identities=13%  Similarity=0.099  Sum_probs=98.8

Q ss_pred             cEEEeccccccccceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEe
Q psy18191         65 ICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVP  144 (238)
Q Consensus        65 ~~~w~~~~~~~~~~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~  144 (238)
                      .+.|++++..+...+ ..|.+.++..+|+|.|+|.+.+...          .....     +.+..+|.+. .+....+.
T Consensus        33 ~~~W~~~g~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~----------s~~~~-----l~v~~~~~~~-~~~~~~~~   95 (262)
T 3rjd_A           33 STQWFLNGTATQTST-PSYRITSASVNDSGEYRCQRGLSGR----------SDPIQ-----LEIHRGWLLL-QVSSRVFT   95 (262)
T ss_dssp             CEEEEETTEECSCCS-SEEEESSCCGGGCEEEEEEESSSCC----------CCCEE-----EEEECSSEEE-EESCSEEE
T ss_pred             eEEEEECCEEeeccC-CeEEEecCCcccCeEEEEEEecCCc----------cccEE-----EEEeccceEe-cCCCeEEe
Confidence            899999998665432 2456788899999999987765321          01111     1123444433 34557788


Q ss_pred             CCCcEEEEEEE-eeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEE
Q psy18191        145 RHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL  223 (238)
Q Consensus       145 ~G~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L  223 (238)
                      +|+.+.|.|.+ .+.|.+.+.|++++..+...       ...+.|.    |..+..+|+|.|+|.|.|..|... ..+.|
T Consensus        96 ~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~-------~~~~~l~----i~~~~~~d~G~Y~C~~~n~~~~~~-~~~~l  163 (262)
T 3rjd_A           96 EGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF-------HWNSNLT----ILKTNISHNGTYHCSGMGKHRYTS-AGISV  163 (262)
T ss_dssp             TTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE-------EECCCEE----ESSCCGGGCEEEEEEEESSSEEEE-ECEEE
T ss_pred             cCCeEEEEEEccCCCCCceEEEEECCcccccc-------CCCCeEE----EEECChhhCEEEEEEEeCCCCccc-cceEE
Confidence            99999999999 78888999999999887632       2245555    566699999999999999998775 58899


Q ss_pred             EEccCCC
Q psy18191        224 DVAGKIS  230 (238)
Q Consensus       224 ~V~~~~~  230 (238)
                      .|...+.
T Consensus       164 ~V~~~~~  170 (262)
T 3rjd_A          164 TVKELFP  170 (262)
T ss_dssp             EEECSSC
T ss_pred             EeccCCC
Confidence            9986543

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.48  E-value=5.2e-14  Score=108.76  Aligned_cols=130  Identities=15%  Similarity=0.095  Sum_probs=80.0

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeC-
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYP-  159 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P-  159 (238)
                      ..|.|.++.++|+|.|+|.+.+..  |. . ..  .....+. +......+|.+...+....+.+|+.+.|.|.+.|.+ 
T Consensus        68 ~~L~I~~v~~~D~G~Y~C~~~~~~--~~-~-~~--~~~~~l~-V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p  140 (211)
T 3tv3_L           68 ASLTVSGLQTDDEAVYYCGSLVGN--WD-V-IF--GGGTKLT-VLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYP  140 (211)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEETT--TE-E-EE--CCCEEEE-ECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBS
T ss_pred             EEEEECCCChhHCEEEEEEEecCC--Cc-e-eE--CCCceEE-EeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecC
Confidence            357788888889999987765531  10 0 00  0111111 111123678887766555555799999999999863 


Q ss_pred             -CCEEEEEeCCEEeeccCC-ccEEEecCCcEEEE--EeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        160 -EPRIEWYKDGSLVSAEIG-SHRILLPAGSLFFL--SLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       160 -~p~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~--~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                       .+.+.|+++|..+..... .......++.....  +.|..+..+|.|.|+|.|.|..|...
T Consensus       141 ~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~  202 (211)
T 3tv3_L          141 GAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE  202 (211)
T ss_dssp             SCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEE
T ss_pred             CCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEE
Confidence             588999999998864200 11112233433221  22444466789999999999987764

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.48  E-value=1.5e-12  Score=90.81  Aligned_cols=93  Identities=22%  Similarity=0.327  Sum_probs=70.3

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .||.|...+.+..+.+|+++.|.|.+.+.  |.+.|++++..+...  .+.....++... .+.|..+..+|+|.|+|.|
T Consensus        18 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~--~~~~~~~~~~~~-~L~I~~v~~~D~G~Y~C~a   92 (113)
T 2edh_A           18 LPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDG--DRHSLRQDGARC-ELQIRGLVAEDAGEYLCMC   92 (113)
T ss_dssp             SCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCS--SSEEEEEETTEE-EEEECSCCSTTCEEEEEEE
T ss_pred             CCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCC--CcEEEEECCCEE-EEEECCCChhhCEEEEEEe
Confidence            45688888888999999999999999774  789999999888643  222223334221 1236788999999999999


Q ss_pred             EeCCCceeEEEEEEEEccCCCCC
Q psy18191        210 RNELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V~~~~~~~  232 (238)
                          |... ..+.|.|..+|...
T Consensus        93 ----~~~~-~~~~l~V~~~p~~~  110 (113)
T 2edh_A           93 ----GKER-TSAMLTVRAMPSGP  110 (113)
T ss_dssp             ----TTEE-EEEEEEECCCCCSS
T ss_pred             ----CCCC-EEEEEEEeCCCCCc
Confidence                6665 58999998877554

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.48  E-value=7.3e-13  Score=100.59  Aligned_cols=99  Identities=24%  Similarity=0.401  Sum_probs=77.2

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      +..+|.+...+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+...  .......++.... ..|..+..+|+|.|+|
T Consensus         4 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~-L~i~~~~~~d~G~Y~C   80 (197)
T 3lcy_A            4 SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQS--RKYKMSSDGRTHT-LTVMTEEQEDEGVYTC   80 (197)
T ss_dssp             CCEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCC--SSEEEEESSSEEE-EEEECCSGGGCEEEEE
T ss_pred             cCCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCC--ccEEEEeCCCEEE-EEEecCCccCCEEEEE
Confidence            346899999899999999999999999999999999999999988643  2222233332111 1256679999999999


Q ss_pred             EEEeCCCceeEEEEEEEEccCCC
Q psy18191        208 VARNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      .|.|..|... ..+.|.|...+.
T Consensus        81 ~~~n~~~~~~-~~~~l~v~~~p~  102 (197)
T 3lcy_A           81 IATNEVGEVE-TSSKLLLQATPQ  102 (197)
T ss_dssp             EEECSSCEEE-EEEEEEEEEEEE
T ss_pred             EEECCCCcee-EEEEEEEEcCCC
Confidence            9999999986 488888866543

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=2.7e-13  Score=93.04  Aligned_cols=95  Identities=22%  Similarity=0.293  Sum_probs=72.9

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .+|.|...+.++.+.+|+++.|.|. .+.|.|.+.|++++..+...  .......++.... +.|..+..+|+|.|+|. 
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~--~~~~~~~~~~~~~-L~I~~v~~~D~G~Y~C~-   81 (103)
T 2dku_A            7 GANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRAS--GKHQPSQEGLTLR-LTISALEKADSDTYTCD-   81 (103)
T ss_dssp             CCCCCSSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCCSS--SSEEEEEETTEEE-EEEESCCTTTCSEEEEE-
T ss_pred             CCCEeEecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCCC--CeEEEEeCCCEEE-EEECCCCcccCEEEEEE-
Confidence            5677877788899999999999999 58899999999999888753  2222223342111 12677799999999998 


Q ss_pred             EeCCCceeEEEEEEEEccCCCCCC
Q psy18191        210 RNELGFARSKNATLDVAGKISTAT  233 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V~~~~~~~~  233 (238)
                         .|... ..+.|.|...+.+|.
T Consensus        82 ---~g~~~-~~~~l~V~~~p~~p~  101 (103)
T 2dku_A           82 ---IGQAQ-SRAQLLVQGRRSGPS  101 (103)
T ss_dssp             ---CSSCB-CCEEEEEECSCCCCS
T ss_pred             ---eCCce-EEEEEEEeCccCCCC
Confidence               77776 489999999887765

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.48  E-value=9e-13  Score=100.38  Aligned_cols=97  Identities=28%  Similarity=0.402  Sum_probs=77.2

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEe-cCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      .+|.|...+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+........... .++...+  .|..+..+|+|.|+|.
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L--~i~~~~~~d~G~Y~C~   80 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL--IIASVTDDDATVYQVR   80 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEE--EECSCCGGGCSEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEE--EECcCCHHhCEEEEEE
Confidence            579999888999999999999999999999999999999998875422333332 2332222  2677899999999999


Q ss_pred             EEeCCCceeEEEEEEEEccCC
Q psy18191        209 ARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      |.|..|... ..+.|.|..++
T Consensus        81 ~~n~~g~~~-~~~~l~V~~~p  100 (197)
T 2j8h_A           81 ATNQGGSVS-GTASLEVEVPA  100 (197)
T ss_dssp             EEETTEEEE-EEEEEEEEEEE
T ss_pred             EEECCCcee-EEEEEEEcCCC
Confidence            999999985 58888886654

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.4e-13  Score=96.66  Aligned_cols=91  Identities=23%  Similarity=0.273  Sum_probs=70.3

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCC---cEEEEEeecCCCCCCCeEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAG---SLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~---~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      ++.|...+.++.+.+|+++.|.|.+.|.|.|.+.|+++|..+..+ ....+...++   .|.    |..+..+|+|.|+|
T Consensus        13 p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~-~~~~~~~~~~~~~~L~----I~~v~~~D~G~Y~C   87 (115)
T 2cr6_A           13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHAN-ELNEIDAQPGGYHVLT----LRQLALKDSGTIYF   87 (115)
T ss_dssp             CCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCS-SSCCBCCBTTTBCCBE----ECSCCTTTCEEEEE
T ss_pred             CCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCC-CcEEEEEcCCCEEEEE----EcCCChhhCEEEEE
Confidence            347888888999999999999999999999999999999988753 1112211222   343    67779999999999


Q ss_pred             EEEeCCCceeEEEEEEEEccCCCC
Q psy18191        208 VARNELGFARSKNATLDVAGKIST  231 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~~~~~~  231 (238)
                      .    +|... ..+.|.|..++..
T Consensus        88 ~----~g~~~-~~~~L~V~~~p~~  106 (115)
T 2cr6_A           88 E----AGDQR-ASAALRVTEKPSV  106 (115)
T ss_dssp             E----ETTEE-CCEEEEEECCSSC
T ss_pred             E----ECCee-EEEEEEEECCCce
Confidence            9    56775 4889999887654

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.47  E-value=3.9e-13  Score=90.96  Aligned_cols=87  Identities=22%  Similarity=0.349  Sum_probs=66.0

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      .|.|...+.++.+.+|+++.|.|.+ +.|.|.+.|++++..+..+ ....+. .++.... +.|..+..+|+|.|+|.| 
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~-~~~~~~-~~~~~~~-L~I~~v~~~D~G~Y~C~a-   82 (95)
T 2k1m_A            8 VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISAS-NKYGLA-TEGTRHT-LTVREVGPADQGSYAVIA-   82 (95)
T ss_dssp             CCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSS-TTCEEE-EETTEEE-EEESSCCTTCCSEEEEEE-
T ss_pred             CCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCC-CcEEEE-EcCCEEE-EEEcCCCcccCEEEEEEE-
Confidence            4666677788999999999999999 8899999999999988753 222332 2333222 237888999999999999 


Q ss_pred             eCCCceeEEEEEEEEc
Q psy18191        211 NELGFARSKNATLDVA  226 (238)
Q Consensus       211 N~~G~~~s~~~~L~V~  226 (238)
                         |... ..+.|.|.
T Consensus        83 ---g~~~-~~~~l~V~   94 (95)
T 2k1m_A           83 ---GSSK-VKFDLKVI   94 (95)
T ss_dssp             ---TTEE-EEEEEEEE
T ss_pred             ---CCce-EEEEEEEe
Confidence               6665 47888885

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.47  E-value=4.9e-13  Score=114.27  Aligned_cols=153  Identities=12%  Similarity=0.162  Sum_probs=86.9

Q ss_pred             CCCc-cEEEeccccccccce----------------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecc
Q psy18191         61 YPKP-ICLRFQDLLPQSKQG----------------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPG  123 (238)
Q Consensus        61 ~~~~-~~~w~~~~~~~~~~g----------------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~  123 (238)
                      .|.+ .+.|++++.++....                ...|.+..+..+|+|.|+|.+.+...  ..        ..... 
T Consensus       144 ~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~--~~--------~~~~~-  212 (438)
T 1qgc_4          144 YPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS--TS--------PIVKS-  212 (438)
T ss_dssp             BSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTC--SS--------CEEEE-
T ss_pred             cCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEeccc--CC--------ceecc-
Confidence            3455 799999887554331                12455556666667777766554211  10        00111 


Q ss_pred             eecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeC--CCEEEEEeC--CEEeec---------------cCCccEEEe-
Q psy18191        124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYP--EPRIEWYKD--GSLVSA---------------EIGSHRILL-  183 (238)
Q Consensus       124 ~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~--g~~l~~---------------~~~~~~~~~-  183 (238)
                      +.. ...++. ...+....+.+|+++.|.|.+.|.|  .+.+.|+++  +..+..               ....+.... 
T Consensus       213 ~~~-~~~~~~-~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  290 (438)
T 1qgc_4          213 FNR-NECEVM-LVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISR  290 (438)
T ss_dssp             EET-TC-CCE-EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEE
T ss_pred             ccc-ccceeE-EecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEe
Confidence            111 112233 3345677899999999999999988  679999996  543321               001121111 


Q ss_pred             cCCcEEEEEeecCCCCCCCeEEEEEEEeCCC-----ceeEEEEEEEEcc
Q psy18191        184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELG-----FARSKNATLDVAG  227 (238)
Q Consensus       184 ~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G-----~~~s~~~~L~V~~  227 (238)
                      ........+.|..++.+|+|.|+|.|.|..|     ... ..+.|.|..
T Consensus       291 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~-~~~~l~V~~  338 (438)
T 1qgc_4          291 DNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWG-QGTVVTVSA  338 (438)
T ss_dssp             ETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBC-CCEEEEECS
T ss_pred             ecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeC-CCEEEEEec
Confidence            1111111223788899999999999999544     221 245677764

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.47  E-value=1.6e-13  Score=106.01  Aligned_cols=125  Identities=10%  Similarity=0.111  Sum_probs=76.5

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee-CC
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY-PE  160 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~  160 (238)
                      .|.|.++..+|+|.|.|.+.+..  |...    . ....+.  ......+|.+...+....+..|+.+.|.|.+.|. |.
T Consensus        71 ~L~I~~v~~~D~G~Y~C~~~~~~--~~~~----~-~~~~l~--V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~  141 (210)
T 1lk3_L           71 TLTIDPVEADDTAIYFCQQSWNG--PLTF----G-AGTKLE--LKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPR  141 (210)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSS--SCEE----C-CCEEEE--ECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSS
T ss_pred             EEEECCCCHHHCeEEEEEEEcCC--Ccee----C-CCEEEE--EcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCC
Confidence            68888899999999998776532  1100    0 000111  1112246777765443334589999999999875 55


Q ss_pred             C-EEEEEeCCEEeeccCCccEE---EecCCcEE--EEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        161 P-RIEWYKDGSLVSAEIGSHRI---LLPAGSLF--FLSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       161 p-~i~W~~~g~~l~~~~~~~~~---~~~~~~l~--~~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      | .+.|+++|..+.... ....   ...++...  ..+.|..+..+|+|.|+|.|.|.....
T Consensus       142 ~~~v~W~k~g~~~~~~~-~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          142 DISVKWKIDGTERRDGV-LDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             CCEEEEEETTEECCTTE-EEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             ceEEEEEeCCccCCCCc-eEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence            4 899999999876420 0110   11233321  122255568899999999999987644

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.46  E-value=2.8e-13  Score=104.68  Aligned_cols=127  Identities=12%  Similarity=0.108  Sum_probs=79.3

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCC
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPE  160 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~  160 (238)
                      ..|.|.++..+|+|.|+|.+.+..  |.   ....  ...+.  ......+|.+...+.......|+.+.|.|.+.|.|+
T Consensus        71 ~~L~I~~v~~~D~G~Y~C~~~~~~--~~---~~~~--~~~l~--V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p  141 (213)
T 3r06_A           71 SSFTISSLESEDIGSYYCQQYYNY--PW---TFGP--GTKLE--IKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYP  141 (213)
T ss_dssp             EEEEESSCCGGGCSEEEEEECSSS--SC---EECC--CEEEE--ECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBS
T ss_pred             EEEEECCCCcccCEEEEEecccCC--ce---EEcC--CceEE--EeccCCCceeeeeCCCceecCCCCcEEEEEEeeecC
Confidence            368888999999999998776532  10   0000  01111  122357888877666666667888999999998765


Q ss_pred             C--EEEEEeCCEEeeccCCccE--EEecCCcEEEE--EeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        161 P--RIEWYKDGSLVSAEIGSHR--ILLPAGSLFFL--SLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       161 p--~i~W~~~g~~l~~~~~~~~--~~~~~~~l~~~--~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      |  .+.|+++|..+........  ....++.+.+.  ..|..+..+|.|.|+|.|.|.....
T Consensus       142 ~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~  203 (213)
T 3r06_A          142 KDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTA  203 (213)
T ss_dssp             SCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred             CceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCc
Confidence            3  8999999998864200001  11123433322  2244446678999999999987543

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.46  E-value=9.7e-14  Score=107.60  Aligned_cols=133  Identities=14%  Similarity=0.173  Sum_probs=76.0

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEee-eC
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADG-YP  159 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g-~P  159 (238)
                      ..|.|.++..+|+|.|.|.+.+..  |....... .....+. +......+|.+...+.......|+.+.|.|.+.| .|
T Consensus        75 ~~L~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~~-~~~~~l~-V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p  150 (218)
T 3s96_B           75 RYLSISNIQPEDEAIYICGVGDTI--KEQFVYVF-GGGTKVT-VLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSP  150 (218)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEEEE--TTEEEEEE-CCCEEEE-EESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBS
T ss_pred             EEEEEccCCcccCEEEEEEEecCC--CCceeEEE-cCcEEEE-EecCCCCCceEEeeCCCcccccCCcEEEEEEECcccC
Confidence            347888899999999997765521  10000000 0111111 1111236777776544455556789999999988 57


Q ss_pred             CC-EEEEEeCCEEeeccCCccEEEecCCcEEEE--EeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        160 EP-RIEWYKDGSLVSAEIGSHRILLPAGSLFFL--SLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       160 ~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~--~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      .| .+.|+++|..+............++.+.+.  ..|..+..+|.|.|+|.|.|..|...
T Consensus       151 ~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~  211 (218)
T 3s96_B          151 SGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVE  211 (218)
T ss_dssp             SCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEE
T ss_pred             CCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccc
Confidence            77 899999999886421111111124444331  12444466679999999999987764

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.46  E-value=6.4e-13  Score=100.85  Aligned_cols=95  Identities=26%  Similarity=0.433  Sum_probs=76.5

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      .+|.|...+.+..+.+|+++.|.|.+.|.|.|.+.|+++|..+..... .......++...+.  |..++.+|+|.|+|.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~--i~~~~~~d~G~Y~C~   81 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLT--IPAVTKANSGRYSLK   81 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEE--ESSCCGGGCEEEEEE
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEE--ECCCCcccCEEEEEE
Confidence            578898888899999999999999999999999999999988875421 23333444433332  678899999999999


Q ss_pred             EEeCCCceeEEEEEEEEcc
Q psy18191        209 ARNELGFARSKNATLDVAG  227 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~  227 (238)
                      |.|..|... ..+.|.|..
T Consensus        82 ~~n~~~~~~-~~~~l~v~~   99 (194)
T 2a38_A           82 ATNGSGQAT-STAELLVKA   99 (194)
T ss_dssp             EEETTEEEE-EEEEEEEEC
T ss_pred             EEcCCceEe-EEEEEEEcc
Confidence            999999886 488888874

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.46  E-value=7.4e-13  Score=104.10  Aligned_cols=127  Identities=17%  Similarity=0.213  Sum_probs=73.3

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCc--------cCCEEEeCCCceEEeCCCcEEEEE
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGY--------RVPRITEHPASAVVPRHEPTTLNC  153 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~--------~~P~i~~~~~~~~~~~G~~~~L~C  153 (238)
                      .|.|.++.++|+|.|.|.+.+..... ..-...  ....+. +.....        ..+.+...|..+.+.+|+++.|.|
T Consensus        74 ~L~I~~v~~~DsG~Y~C~~~~~~g~~-~~~~~~--~~~~l~-V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C  149 (238)
T 2p1y_A           74 SLILELATPSQTSVYFCASGDLGQTN-ERLFFG--HGTKLS-VLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNC  149 (238)
T ss_dssp             EEEESSCCGGGCEEEEEEEEC-------CEEEC--CCEEEE-EECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEE
T ss_pred             EEEEecCCcccCeeEEEEEEeCCCcc-ccceeC--CCeEEE-EeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEE
Confidence            57788888889999987766531100 000000  001111 100000        012556667778899999999999


Q ss_pred             EEeeeCCCEEEEEeCC-----EEeecc-C------CccEEEe--cCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191        154 KADGYPEPRIEWYKDG-----SLVSAE-I------GSHRILL--PAGSLFFLSLVHGKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       154 ~~~g~P~p~i~W~~~g-----~~l~~~-~------~~~~~~~--~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~  213 (238)
                      .+.|.|.|.+.|++++     ..+... .      ..+....  ..+.. ..+.|..+..+|+|.|+|.|.|..
T Consensus       150 ~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          150 SYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKK-LSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             ECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTE-EEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCe-EEEEEcCCCHHHCEEEEEEEeeCC
Confidence            9999999999999964     111100 0      0111111  11111 123478889999999999999983

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.46  E-value=6.7e-13  Score=105.09  Aligned_cols=129  Identities=18%  Similarity=0.145  Sum_probs=73.6

Q ss_pred             EEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEee-eCCC
Q psy18191         83 LVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADG-YPEP  161 (238)
Q Consensus        83 l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g-~P~p  161 (238)
                      |.|.++..+|+|.|+|...+..  |           .....+.+.+..+|.+...+.. ....|+.+.|.|.+.| .|.|
T Consensus        84 L~I~~v~~~D~G~Y~C~~~~~~--~-----------~~~~~~~L~V~~~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P~p  149 (248)
T 3pv7_A           84 LRLPGIQLEEAGEYRCEVVVTP--L-----------KAQGTVQLEVVASPASRLLLDQ-VGMKENEDKYMCESSGFYPEA  149 (248)
T ss_dssp             EEESSCCGGGCEEEEEEEEETT--E-----------EEEEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSC
T ss_pred             EEeCCCCHHHCeEEEEEEEeCC--c-----------cceeEEEEEEecCCceEEecCC-ccccCCCcEEEEEEccEECCC
Confidence            7777888888888887654421  1           1111222335568888766553 3456778889999998 7999


Q ss_pred             -EEEEEeCCEEeecc----CC---ccEEEecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCce-eEEEEEEEE
Q psy18191        162 -RIEWYKDGSLVSAE----IG---SHRILLPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGFA-RSKNATLDV  225 (238)
Q Consensus       162 -~i~W~~~g~~l~~~----~~---~~~~~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~~-~s~~~~L~V  225 (238)
                       .+.|+++|..+...    ..   .......++...+  ...|..+..+|.|.|+|.|.|..+.. .+..+.|.|
T Consensus       150 i~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          150 INITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             CEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             eEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence             99999998643211    00   0111223344332  22355667888999999999998863 234777777

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.46  E-value=7.3e-13  Score=95.75  Aligned_cols=89  Identities=20%  Similarity=0.255  Sum_probs=63.7

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccC--------CccEEEe--cCCcEEEEEeecCC
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEI--------GSHRILL--PAGSLFFLSLVHGK  197 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~--------~~~~~~~--~~~~l~~~~vi~~v  197 (238)
                      ...+|.|...|.+..+.+|+++.|.|.+.|.|.|.+.|++++..+....        .......  ........+.|..+
T Consensus        18 ~~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v   97 (137)
T 3qr2_A           18 GSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL   97 (137)
T ss_dssp             ---CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSC
T ss_pred             CCCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCC
Confidence            4479999999999999999999999999999999999999776543210        0011110  01111122237778


Q ss_pred             CCCCCeEEEEEEEeCCCce
Q psy18191        198 KDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N~~G~~  216 (238)
                      ..+|+|.|+|.|.|..|..
T Consensus        98 ~~~D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           98 VEEDTGTYECRASNDPDRN  116 (137)
T ss_dssp             CGGGCEEEEEEEECCTTSS
T ss_pred             CcccCEEEEEEEEecCCcc
Confidence            9999999999999999986

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.46  E-value=2e-13  Score=105.46  Aligned_cols=128  Identities=16%  Similarity=0.161  Sum_probs=78.6

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCC
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPE  160 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~  160 (238)
                      ..|.+.++..+|+|.|.|.+.+..  |.   .....  ..+. +......+|.+...+.......|+.+.|.|.+.|.++
T Consensus        73 ~~L~I~~v~~~D~G~Y~C~~~~~~--~~---~~~~~--~~l~-V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p  144 (212)
T 1q0x_L           73 AALTITGAQTEDEAIYFCALWSNN--KL---VFGGG--TKLT-VLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYP  144 (212)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECSS--CE---EECCC--EEEE-ECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBS
T ss_pred             EEEEECCCCccCCEEEEEEEecCc--hh---hcCCC--eEEE-EecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeC
Confidence            367888899999999998776532  10   11011  1111 1111235788876544444457899999999998654


Q ss_pred             C--EEEEEeCCEEeeccCCc-cEEEecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        161 P--RIEWYKDGSLVSAEIGS-HRILLPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       161 p--~i~W~~~g~~l~~~~~~-~~~~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      +  .+.|+++|..+...... ......++....  .+.|..+..+|.|.|+|.|.|.....
T Consensus       145 ~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  205 (212)
T 1q0x_L          145 GVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSS  205 (212)
T ss_dssp             SCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEE
T ss_pred             CCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcce
Confidence            4  89999999988642100 011122333221  22245557789999999999987654

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.46  E-value=2.3e-13  Score=105.22  Aligned_cols=143  Identities=15%  Similarity=0.143  Sum_probs=84.0

Q ss_pred             ccEEEeccccccccc----------e----EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCc
Q psy18191         64 PICLRFQDLLPQSKQ----------G----LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGY  129 (238)
Q Consensus        64 ~~~~w~~~~~~~~~~----------g----~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~  129 (238)
                      ..+.|++++......          +    ...|.+..+..+|+|.|+|.+.+...  .....      ..+.. ...+.
T Consensus        37 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~--~~~~~------~~v~~-~~~~~  107 (207)
T 2vol_A           37 VQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAF--PAPIE------KTISK-TKGRP  107 (207)
T ss_dssp             CEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTC--SSCEE------EEECC-CCCCC
T ss_pred             eEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCC--CCceE------EEecc-CCCCC
Confidence            479999987643211          1    12466667777778888876665321  10000      01110 01355


Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEe--ecCCCCCCCeEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSL--VHGKKDTDSGVY  205 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~v--i~~v~~~d~G~Y  205 (238)
                      .+|.+...+.......|+.+.|.|.+.|. |. +.++|+++|..+............+|.+.+...  |.....+|.|.|
T Consensus       108 ~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~y  187 (207)
T 2vol_A          108 KAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTF  187 (207)
T ss_dssp             BCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEE
T ss_pred             cCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEE
Confidence            78888655433323469999999999985 44 389999999987532111112234566554322  222334579999


Q ss_pred             EEEEEeCCCc
Q psy18191        206 WCVARNELGF  215 (238)
Q Consensus       206 ~C~a~N~~G~  215 (238)
                      +|.|.|....
T Consensus       188 tC~a~n~~l~  197 (207)
T 2vol_A          188 TCSVLHEGLH  197 (207)
T ss_dssp             EEEEECTTSG
T ss_pred             EEEEECCCCC
Confidence            9999998754

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.45  E-value=5.8e-13  Score=103.09  Aligned_cols=100  Identities=52%  Similarity=0.976  Sum_probs=81.7

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccC-CccEEEecCCcEEEEEeecCCCCCCCeEEE
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEI-GSHRILLPAGSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~-~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      ...+|.|...|..+.+.+|+++.|.|.+.|.|.|.+.|+++|..+.... ...+....++.+.+...|..++.+|+|.|+
T Consensus         6 ~~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~   85 (217)
T 2vr9_A            6 QYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYW   85 (217)
T ss_dssp             CCCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEE
T ss_pred             ccCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEE
Confidence            3478999999999999999999999999999999999999999887532 134555667777665557888999999999


Q ss_pred             EEEEeCCCceeEEEEEEEEcc
Q psy18191        207 CVARNELGFARSKNATLDVAG  227 (238)
Q Consensus       207 C~a~N~~G~~~s~~~~L~V~~  227 (238)
                      |.|.|..|...+..+.|.|..
T Consensus        86 C~~~n~~g~~~~~~~~l~v~~  106 (217)
T 2vr9_A           86 CVAKNRVGQAVSRHASLQIAV  106 (217)
T ss_dssp             EEEEETTEEEECCCEEEEECE
T ss_pred             EEEecCCCccccccceEEEEE
Confidence            999999998754466777654

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.45  E-value=3.2e-13  Score=107.88  Aligned_cols=147  Identities=15%  Similarity=0.212  Sum_probs=84.3

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcc--cCC-ceEEeCCCCcceecceecC-----------CccCCEEEeCCCceEEeCC
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQ--KGL-PLKKYHPPSLPLFPGVHGD-----------GYRVPRITEHPASAVVPRH  146 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~--~G~-y~c~~~~~~~~~~~~~~~~-----------v~~~P~i~~~~~~~~~~~G  146 (238)
                      ..|.|.++.++|+|.|.|.+.+...  .+. ..-.+..  ...+. +...           ...++.+...+..+.+.+|
T Consensus        78 ~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~--~~~l~-V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G  154 (257)
T 1f3r_B           78 VFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGP--GTMVT-VSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVG  154 (257)
T ss_dssp             EEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECC--CEEEE-ECSSCCSSCCSSSCCCCCEECSCEETSEECCCTT
T ss_pred             EEEEECCCCcccCEEEEEEEcccccCccccccccccCC--ceEEE-EEeCCccccccccCCCccceEEEccCCEEEEcCC
Confidence            3678889999999999987665311  000 0000000  00111 0000           0012233344566778899


Q ss_pred             CcEEEEEEEeeeCCCEEEEEe--CCEEeec---c-------CCccEEEe-cCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191        147 EPTTLNCKADGYPEPRIEWYK--DGSLVSA---E-------IGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       147 ~~~~L~C~~~g~P~p~i~W~~--~g~~l~~---~-------~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~  213 (238)
                      +++.|.|.+.+.|.|.+.|++  +|..+..   .       ...+.... .++..  .+.|..+..+|+|.|.|.|.|..
T Consensus       155 ~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          155 DRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDY--TLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             CCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEE--EEEECSCCGGGCSEEEEEEESSS
T ss_pred             CCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEE--EEEECCCChhhCEEEEEEEeCCC
Confidence            999999999999999999999  5543310   0       01111111 12222  22377889999999999999975


Q ss_pred             CceeEEEEEEEEccCCCCCC
Q psy18191        214 GFARSKNATLDVAGKISTAT  233 (238)
Q Consensus       214 G~~~s~~~~L~V~~~~~~~~  233 (238)
                       ........|.|.+....+.
T Consensus       233 -~~~g~gt~l~V~~~~~~~~  251 (257)
T 1f3r_B          233 -YTFGAGTKLELKAAEQKLI  251 (257)
T ss_dssp             -EEECCCCEECCSSSCCCCC
T ss_pred             -CeECCCEEEEEeCCCcCCc
Confidence             2222355788877655443

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=1.3e-12  Score=91.11  Aligned_cols=95  Identities=21%  Similarity=0.265  Sum_probs=67.6

Q ss_pred             ccCCEEEeCCCc---eEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEE
Q psy18191        129 YRVPRITEHPAS---AVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       129 ~~~P~i~~~~~~---~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                      ..+|.+...|..   +.+.+|+++.|.|.+. .|.|.+.|+++|..+... ....+ ..++.... +.|..+..+|+|.|
T Consensus         8 ~~pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~-~~~~~-~~~~~~~~-L~I~~v~~~D~G~Y   83 (113)
T 2cpc_A            8 TDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVES-PALLL-QKEDTVRR-LVLPAVQLEDSGEY   83 (113)
T ss_dssp             CSCSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCB-TTBEE-EECSSEEE-EEESSCCTTTCEEE
T ss_pred             ccCCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccC-CCEEE-EECCCEEE-EEECCCCcccCEEE
Confidence            345555444444   6788999999999995 889999999999988753 22222 22332222 23778899999999


Q ss_pred             EEEEEeCCCceeEEEEEEEEccCCCCC
Q psy18191        206 WCVARNELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       206 ~C~a~N~~G~~~s~~~~L~V~~~~~~~  232 (238)
                      +|.|.|    . +..+.|.|..++...
T Consensus        84 ~C~a~n----~-~~~~~l~V~~~p~~~  105 (113)
T 2cpc_A           84 LCEIDD----E-SASFTVTVTEPPVRI  105 (113)
T ss_dssp             EEESSS----C-EEEEEEEEECCCCCC
T ss_pred             EEEEec----C-cEEEEEEEecCCchh
Confidence            999999    3 358889998776443

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.45  E-value=3.8e-14  Score=109.64  Aligned_cols=129  Identities=15%  Similarity=0.177  Sum_probs=79.1

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee-C
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY-P  159 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P  159 (238)
                      ..|.|.++..+|+|.|+|.+.+... +. . ....  ...+. +......+|.+...+....+.+|+.+.|.|.+.|. |
T Consensus        69 ~~L~I~~v~~~D~G~Y~C~~~n~~~-~~-~-~~~~--~~~l~-V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p  142 (212)
T 1nfd_E           69 ATLTISGAQPEDEAAYYCLSSYGDN-ND-L-VFGS--GTQLT-VLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYP  142 (212)
T ss_dssp             EEEEETTCCGGGCSEEEEEEEETTT-TE-E-EECC--CEEEE-EECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBS
T ss_pred             EEEEECcCCcccCEEEEEEEEcccC-cc-c-ccCC--ceEEE-EccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeEC
Confidence            3688889999999999987663111 00 0 1111  11111 11112367888765544445679999999999987 5


Q ss_pred             C-CEEEEEeCCEEeeccCCccEEE-ecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        160 E-PRIEWYKDGSLVSAEIGSHRIL-LPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       160 ~-p~i~W~~~g~~l~~~~~~~~~~-~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      + |.+.|+++|..+.......... ..++ ...  .+.|..+..+|+|.|+|.|.|..+..
T Consensus       143 ~~~~v~W~k~g~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (212)
T 1nfd_E          143 GSATVTWKANGATINDGVKTTKPSKQGQN-YMTSSYLSLTADQWKSHNRVSCQVTHEGETV  202 (212)
T ss_dssp             SCCEEEEEETTEEECSSCBCCCCBCSSSC-EEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred             CccEEEEEECCeEcCCCeecCCceecCCC-ceEEEEEEEchhhcCCCCeEEEEEEeCCceE
Confidence            5 7999999999886431100000 1111 111  11245558899999999999998765

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=1.4e-12  Score=91.02  Aligned_cols=95  Identities=15%  Similarity=0.164  Sum_probs=70.5

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCcc-------EEEe-cCCcEEEEEeecCCCCCC
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSH-------RILL-PAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~-------~~~~-~~~~l~~~~vi~~v~~~d  201 (238)
                      .+|.|...+.+..+.+|+++.|.|.+.+  .|.+.|++||..|..+....       ++.+ .+|... .++|+.+..+|
T Consensus         7 p~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~-~L~I~~v~~~D   83 (112)
T 2e6q_A            7 GTARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQH-RLILHAVKHQD   83 (112)
T ss_dssp             SCCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEE-EEEEESCCSTT
T ss_pred             CCcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEE-EEEECCCCHHH
Confidence            4578888899999999999999999987  77899999999998642111       4333 344322 33478889999


Q ss_pred             CeEEEEEEEeCCCceeEEEEEEEEccCCCC
Q psy18191        202 SGVYWCVARNELGFARSKNATLDVAGKIST  231 (238)
Q Consensus       202 ~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~  231 (238)
                      +|.|+|...+   ...+ ++.|.|.++|-.
T Consensus        84 ~G~Y~~~~~~---~~~s-sA~L~V~~~p~~  109 (112)
T 2e6q_A           84 SGALVGFSCP---GVQD-SAALTIQESSGP  109 (112)
T ss_dssp             CSEEEEEEET---TEEE-EEEEEEECSSCS
T ss_pred             CccEEEEEEC---CeeE-EEEEEEeCCCcc
Confidence            9999875443   3444 899999887643

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.45  E-value=1.6e-13  Score=106.60  Aligned_cols=129  Identities=13%  Similarity=0.177  Sum_probs=74.8

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEee-eC
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADG-YP  159 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g-~P  159 (238)
                      ..|.|.++..+|+|.|.|.+.+....+  ......  ...+. +......+|.+...+....+.+|+.+.|.|.+.| .|
T Consensus        79 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~--~~~~~~--~~~l~-V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P  153 (219)
T 1c1e_H           79 AYLQINNLKNEDMATYFCARGTTIVRA--MDYWGQ--GTSLT-VSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP  153 (219)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTTTE--EEEECC--CEEEE-ECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBS
T ss_pred             EEEEECCCCcccCEEEEEEEeccCccc--ceeecC--ceEEE-EecCCCCCCeEEEecCccccccCCeEEEEEEcccccC
Confidence            467888888999999997765532100  001100  11111 1111224577665433344578999999999998 89


Q ss_pred             CC-EEEEEeCCEEeeccCCccEEEecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        160 EP-RIEWYKDGSLVSAEIGSHRILLPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       160 ~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      .| .+.|+++|..+........ . ..+....  ...|.. ...|.|.|+|.|.|..|...
T Consensus       154 ~p~~v~W~~~g~~~~~~~~~~~-~-~~~~~~~~s~L~i~~-~~~d~g~Y~C~a~n~~~~~~  211 (219)
T 1c1e_H          154 EPVTVTWNSGSLSSGVHTFPAV-L-QSDLYTLSSSVTVPS-SPRPSETVTCNVAHPASSTK  211 (219)
T ss_dssp             SCCEEEEGGGTBCTTEEECCCE-E-SSSCEEEEEEEEEES-SSTTTSCCEEEEEEGGGTEE
T ss_pred             CCeEEEEEeCCcccceEecCCc-c-cCCeEEEEEEEEEec-ccCCCCEEEEEEEeCCCCcc
Confidence            99 9999999876432101111 1 1232211  112333 33466999999999988764

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.45  E-value=2.1e-12  Score=102.90  Aligned_cols=93  Identities=15%  Similarity=0.300  Sum_probs=61.6

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCC-CEEEEEeC--CEEee---cc-------CCccEE-EecCCcEEEEEeecC
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPE-PRIEWYKD--GSLVS---AE-------IGSHRI-LLPAGSLFFLSLVHG  196 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~-p~i~W~~~--g~~l~---~~-------~~~~~~-~~~~~~l~~~~vi~~  196 (238)
                      +|.+...+....+.+|+++.|.|.+.+.|. |.+.|++.  +..+.   ..       ...+.. ........  +.|..
T Consensus       149 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--L~I~~  226 (256)
T 3juy_B          149 EIVLTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFT--LTITR  226 (256)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEE--EEESS
T ss_pred             eeEEEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEE--EEECC
Confidence            456777788899999999999999999886 89999983  22211   00       011111 11222222  23788


Q ss_pred             CCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        197 KKDTDSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      ++.+|+|.|.|.|.|..+........|.|
T Consensus       227 v~~~DsG~Y~C~~~~~~~~~~g~gt~l~V  255 (256)
T 3juy_B          227 VEPEDFALYYCQVYGASSYTFGQGTKLER  255 (256)
T ss_dssp             CCGGGCSEEEEEECCSSCCEECCCEEEEE
T ss_pred             CCHhHCEEEEEEEeeCCCceEcCCEEEEE
Confidence            89999999999999966544334555655

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.44  E-value=1.6e-13  Score=107.02  Aligned_cols=145  Identities=17%  Similarity=0.126  Sum_probs=84.7

Q ss_pred             CccEEEeccccccccc--------------eEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCC
Q psy18191         63 KPICLRFQDLLPQSKQ--------------GLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDG  128 (238)
Q Consensus        63 ~~~~~w~~~~~~~~~~--------------g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v  128 (238)
                      .+.+.|||++..+...              ....|.+..+..+|+|.|+|.+.+.  .+...-.      ..+. ....+
T Consensus        44 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~--~~~~~~~------~~v~-~~~~~  114 (218)
T 2rgs_A           44 DVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNK--DLPSPIE------RTIS-KIKGL  114 (218)
T ss_dssp             CEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEET--TCSSCEE------EEEC-CCCCC
T ss_pred             ceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECC--cCCCcce------EEEe-ecCCC
Confidence            3689999988643211              1124666677777778887665542  1111000      0000 01135


Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEee-eCCC-EEEEEeCCEEeeccCCccEEEecCCcEEEEEe--ecCCCCCCCeE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADG-YPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSL--VHGKKDTDSGV  204 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g-~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~v--i~~v~~~d~G~  204 (238)
                      ..+|.+...+.......|+.+.|.|.+.| .|.| .++|+++|..+............+|.+.+...  +.....+|.|.
T Consensus       115 ~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~  194 (218)
T 2rgs_A          115 VRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDS  194 (218)
T ss_dssp             CBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSC
T ss_pred             CCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCe
Confidence            57888765543332236999999999998 5666 89999999987532111112234565554332  22222335899


Q ss_pred             EEEEEEeCCCce
Q psy18191        205 YWCVARNELGFA  216 (238)
Q Consensus       205 Y~C~a~N~~G~~  216 (238)
                      |+|.|.|.....
T Consensus       195 YtC~a~n~~l~~  206 (218)
T 2rgs_A          195 FSCNVRHEGLKN  206 (218)
T ss_dssp             EEEEEECTTSGG
T ss_pred             EEEEEEcCCCCC
Confidence            999999987654

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.44  E-value=1.2e-13  Score=115.50  Aligned_cols=115  Identities=10%  Similarity=0.024  Sum_probs=80.2

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP  161 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p  161 (238)
                      .|.+.++..+|+|.|+|.+.+..  +          ...+.     +..   +...|. ..+.+|+++.|.|.+.|.|.|
T Consensus        68 ~L~I~~v~~~D~G~Y~C~~~n~~--~----------~~~l~-----V~~---~~~~~~-~~v~~G~~v~l~C~~~~~p~~  126 (363)
T 1wio_A           68 PLIIKNLKIEDSDTYICEVEDQK--E----------EVQLL-----VFG---LTANSD-THLLQGQSLTLTLESPPGSSP  126 (363)
T ss_dssp             CEEECSCCGGGCEEEEEEETTEE--E----------EEEEE-----EEE---EEESSC-SSEESBSCEEEEEECCTTCCC
T ss_pred             EEEECCCCHHHCEEEEEEEEECC--C----------cEEEE-----EEe---CCCCCc-eEEecCCCEEEEEEcCCCCCC
Confidence            47777888888888887766631  1          00111     111   223332 456899999999999999999


Q ss_pred             EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCCCC
Q psy18191        162 RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST  231 (238)
Q Consensus       162 ~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~  231 (238)
                      .+.|++++..+.         ...+.|.    |..+..+|+|.|+|.|.|..+... ..+.|.|...+..
T Consensus       127 ~v~W~~~~~~~~---------~~~~~L~----i~~v~~~d~G~Y~C~a~~~~~~~~-~~~~l~v~~~p~~  182 (363)
T 1wio_A          127 SVQCRSPRGKNI---------QGGKTLS----VSQLELQDSGTWTCTVLQNQKKVE-FKIDIVVLAFQKA  182 (363)
T ss_dssp             CEEEECSSSCEE---------EESSEEE----ECSBCGGGCEECEEEEEETTEEEE-ECCEECEECCSCS
T ss_pred             eEEEEcCCCccc---------ccceEEE----EeeCChhcCCEEEEEEecCCCeEE-EEEEEEEecCCCC
Confidence            999999975442         2345555    555699999999999999877775 4778888765543

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.44  E-value=1e-12  Score=92.89  Aligned_cols=94  Identities=17%  Similarity=0.180  Sum_probs=65.3

Q ss_pred             CCCceEEeCCCcEEEEEEEeee--CCCEEEEEeCCEEeecc---CCccEEEecCC--cEEEEEeecCCCCCCCeEEEEEE
Q psy18191        137 HPASAVVPRHEPTTLNCKADGY--PEPRIEWYKDGSLVSAE---IGSHRILLPAG--SLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~--P~p~i~W~~~g~~l~~~---~~~~~~~~~~~--~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .+..+.+.+|+++.|.|.+.|.  |.+.+.|++++..+...   ...........  .....+.|..++.+|+|.|+|.|
T Consensus        14 p~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a   93 (122)
T 3s35_X           14 PSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA   93 (122)
T ss_dssp             SCSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEE
Confidence            3445688999999999999994  45789999988744310   01111111111  01112237788999999999999


Q ss_pred             EeCCCceeEEEEEEEEccCCCC
Q psy18191        210 RNELGFARSKNATLDVAGKIST  231 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V~~~~~~  231 (238)
                      .|..|... ..+.|.|.++|..
T Consensus        94 ~n~~g~~~-~~~~l~V~~~p~i  114 (122)
T 3s35_X           94 SSGLMTKK-NSTFVRVHEKPFV  114 (122)
T ss_dssp             ECSSCEEE-EEEEEEEEEEECC
T ss_pred             ccCCCceE-EEEEEEEeccCeE
Confidence            99999997 5999999887654

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.44  E-value=4.3e-12  Score=115.82  Aligned_cols=160  Identities=18%  Similarity=0.092  Sum_probs=104.0

Q ss_pred             CCCccEEEeccccccccceEEEEEcCCC-CCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQGLMYLVGSQA-SPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPA  139 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g~~~l~~~~~-~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~  139 (238)
                      .|.|.+.|.+++.....-...-+.+... .....+.|.|.+.+  ..|.+.|...       .........+|.|. .+.
T Consensus       103 ~P~p~i~W~k~g~~~~~~~~~~~~i~~~~~~~~~l~~~~va~~--~~G~~~~~~v-------~~~~~~~~~~p~~~-~~~  172 (731)
T 2v5y_A          103 GPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSG--HQGYLAIDEV-------KVLGHPCTRTPHFL-RIQ  172 (731)
T ss_dssp             CCCCSEEEEECCCCCSSCEEEEEEECCCTTSCEEEEEEEEECS--SCCEEEECCB-------EEESSCCSSSCEEC-CCC
T ss_pred             CCccceeEEEeCCcCCceeEEEEEEeecCCCceEEEEEEEecC--CceEEEEeeE-------Eeeecccccccccc-ccc
Confidence            4678899999987543322222333322 22223567764433  5777776321       11111244678887 566


Q ss_pred             ceEEeCCCcEEEEEEEeeeCCCEEE-EE--eCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        140 SAVVPRHEPTTLNCKADGYPEPRIE-WY--KDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~p~i~-W~--~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      +..+..|+++.|.|.+.|.|.|.+. |+  ++|..+...   ...............|..+...|+|.|+|.|.|..|..
T Consensus       173 ~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~---~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~  249 (731)
T 2v5y_A          173 NVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLK---EIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVG  249 (731)
T ss_dssp             CEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEE---EEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEE
T ss_pred             ceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCcccccc---ceEEeccccceEEEEEcccccccCeEEEEEEECCCCCc
Confidence            8999999999999999999999987 88  788776532   11222222122223367779999999999999999983


Q ss_pred             eEEEEEEEEccCCCCCC
Q psy18191        217 RSKNATLDVAGKISTAT  233 (238)
Q Consensus       217 ~s~~~~L~V~~~~~~~~  233 (238)
                      .+..+.|.|..++.++.
T Consensus       250 ~s~~~~l~V~~~P~~~~  266 (731)
T 2v5y_A          250 ISNYAELVVKEPPVPIA  266 (731)
T ss_dssp             ECCCEEEEEECCCCBSS
T ss_pred             ceeeEEEEEecCCCCCC
Confidence            34578899988776554

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.44  E-value=1e-12  Score=104.77  Aligned_cols=148  Identities=16%  Similarity=0.239  Sum_probs=84.0

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecce-------ecCCccCCEEEeCCCceEEeCCCcEEEEEE
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGV-------HGDGYRVPRITEHPASAVVPRHEPTTLNCK  154 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~-------~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~  154 (238)
                      .|.|.++.++|+|.|.|.+.+..  +...........+.+...       ...+..+|.+...+....+.+|+++.|.|.
T Consensus        87 ~L~I~~v~~~DsG~Y~C~~~n~~--~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~  164 (257)
T 3gkz_A           87 YLQLKSVSSEDTATYYCSYFDSD--DYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCS  164 (257)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTT--CTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEE
T ss_pred             EEEECCCChhhCEEEEEEEecCC--CcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEE
Confidence            57888888899999997776531  111111111000011000       000123467777777889999999999999


Q ss_pred             EeeeCCC-EEEEEeC--CEEee---cc-------CCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEE
Q psy18191        155 ADGYPEP-RIEWYKD--GSLVS---AE-------IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNA  221 (238)
Q Consensus       155 ~~g~P~p-~i~W~~~--g~~l~---~~-------~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~  221 (238)
                      +.+.|.| .+.|+++  +..+.   ..       ...+......+.. ..+.|..++.+|+|.|.|.|.|........-.
T Consensus       165 ~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt  243 (257)
T 3gkz_A          165 ASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTS-YSLTISSMEAEDAASYFCHQWSSFPFTFGSGT  243 (257)
T ss_dssp             ESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTE-EEEEESSCCGGGCEEEEEEECSSSSCEECCCE
T ss_pred             EccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCE-EEEEECCCChHHCEEEEEEEccCCceEEcCCE
Confidence            9998887 8999983  32211   00       0011111111111 12237888999999999999985544433345


Q ss_pred             EEEEccCCCCC
Q psy18191        222 TLDVAGKISTA  232 (238)
Q Consensus       222 ~L~V~~~~~~~  232 (238)
                      .|.|...+..|
T Consensus       244 ~l~v~~~~~~~  254 (257)
T 3gkz_A          244 KLEIKRAPHHH  254 (257)
T ss_dssp             EEEECCC----
T ss_pred             EEEEEeCCCCC
Confidence            67776655444

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.43  E-value=4.1e-13  Score=101.75  Aligned_cols=98  Identities=27%  Similarity=0.368  Sum_probs=75.1

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      +..+|.|...+....+.+|+++.|.|.+.|.|.|.+.|++++..+............+..|.    |..++.+|+|.|+|
T Consensus         4 ~~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~----i~~~~~~d~G~Y~C   79 (192)
T 2iep_A            4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLT----ILSVEDSDDGIYCC   79 (192)
T ss_dssp             CCEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEE----ESSCCGGGCEEEEE
T ss_pred             cCCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEE----EcCCCcccCeEEEE
Confidence            44678888878888999999999999999999999999999998875322222222233344    66779999999999


Q ss_pred             EEEeCCCceeEEEEEEEEccCC
Q psy18191        208 VARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      .+.|..|...+..+.|.|..++
T Consensus        80 ~~~~~~~~~~~~~~~l~v~~~p  101 (192)
T 2iep_A           80 TANNGVGGAVESCGALQVKMKP  101 (192)
T ss_dssp             EEECSSSCCEEEEEEEEEEEEE
T ss_pred             EEEcCCCceeEeEEEEEEEeCC
Confidence            9999998854456777776543

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.43  E-value=7e-13  Score=91.46  Aligned_cols=90  Identities=14%  Similarity=0.185  Sum_probs=64.7

Q ss_pred             ccCCEEEeCCCc-eEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        129 YRVPRITEHPAS-AVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       129 ~~~P~i~~~~~~-~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      ..+|.|...+.+ ..+.+|+++.|.|.+ +.|.|.+.|+++|..+..+.....+. .++... .+.|..+..+|+|.|+|
T Consensus        13 ~~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~-~~~~~~-~L~I~~v~~~D~G~Y~C   89 (104)
T 1pd6_A           13 KKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFE-SIGAKR-TLTISQCSLADDAAYQC   89 (104)
T ss_dssp             STTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEE-EETTEE-EEEECSCSSSSCEEEEE
T ss_pred             cCCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEE-ecCCEE-EEEECCCCcccCEEEEE
Confidence            356777666555 889999999999999 78999999999999887531222332 234221 22377889999999999


Q ss_pred             EEEeCCCceeEEEEEEEEc
Q psy18191        208 VARNELGFARSKNATLDVA  226 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~  226 (238)
                      .|    |... ..+.|.|.
T Consensus        90 ~a----~~~~-~~~~l~V~  103 (104)
T 1pd6_A           90 VV----GGEK-CSTELFVK  103 (104)
T ss_dssp             EE----TTEE-ECCEEEEE
T ss_pred             EE----CCCc-EEEEEEEe
Confidence            99    3343 36677775

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.43  E-value=4.8e-13  Score=101.75  Aligned_cols=133  Identities=15%  Similarity=0.154  Sum_probs=79.0

Q ss_pred             CCccEEEec--cccccc----------cce-E-----EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecc
Q psy18191         62 PKPICLRFQ--DLLPQS----------KQG-L-----MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPG  123 (238)
Q Consensus        62 ~~~~~~w~~--~~~~~~----------~~g-~-----~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~  123 (238)
                      +.+.+.|++  ++..+.          ..+ .     ..|.|.++...|+|.|+|.+.+..  |.....    ..+.+. 
T Consensus        29 ~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n~~--g~~~~~----~~~~L~-  101 (182)
T 1hnf_A           29 DIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTK--GKNVLE----KIFDLK-  101 (182)
T ss_dssp             SEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEEETT--SCEEEE----EEEEEE-
T ss_pred             cCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEEeCC--CceeEE----EEEEEE-
Confidence            456899999  765431          111 1     145666777777777776554421  110000    000111 


Q ss_pred             eecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCe
Q psy18191        124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSG  203 (238)
Q Consensus       124 ~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G  203 (238)
                      +. ....+|.+..        .+..+.|.|.+.+.|.|.+.|+++|..+..         ....+.+ ..    ..+|+|
T Consensus       102 V~-~~~~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~l~~---------~~~~i~~-~~----~~~d~G  158 (182)
T 1hnf_A          102 IQ-ERVSKPKISW--------TCINTTLTCEVMNGTDPELNLYQDGKHLKL---------SQRVITH-KW----TTSLSA  158 (182)
T ss_dssp             EE-CCCCCCEEEE--------ETTTTEEEEECSSCSSCEEEEEESSCEEEE---------ESSCEEE-EC----CSCEEE
T ss_pred             Ec-CcCCCCEEEE--------ccCcEEEEeEccCCCCCEEEEEECCEECCC---------CCcEEEE-ec----ccCCCc
Confidence            11 1123455543        234789999999999999999999988721         1223321 11    478999


Q ss_pred             EEEEEEEeCCCceeEEEEEEEE
Q psy18191        204 VYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       204 ~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      .|+|.|.|.+|...+ ...+..
T Consensus       159 ~Y~C~a~N~~~~~~s-~~~~~c  179 (182)
T 1hnf_A          159 KFKCTAGNKVSKESS-VEPVSC  179 (182)
T ss_dssp             EEEEEEECSSCEEEE-EEEEEE
T ss_pred             EEEEEEEeCCCCcEE-cceecC
Confidence            999999999999864 655544

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.43  E-value=4.7e-13  Score=91.83  Aligned_cols=93  Identities=24%  Similarity=0.341  Sum_probs=71.4

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .+|.|...+.++.+.+|+++.|.|.+.+.|.| +.|++++..+...  .......++.... +.|..++.+|+|.|+|. 
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~--~~~~~~~~~~~~~-L~I~~v~~~D~G~Y~C~-   81 (103)
T 2e7b_A            7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPG--DKYSLRQEGAMLE-LVVRNLRPQDSGRYSCS-   81 (103)
T ss_dssp             CCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCS--SSEEEEECSSEEE-EEECSCCTTTCCCEEEE-
T ss_pred             CCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCC--CcEEEEEcCCEEE-EEEccCCcccCEEEEEE-
Confidence            57778777888999999999999999999999 9999999887642  2333334444222 23678899999999998 


Q ss_pred             EeCCCceeEEEEEEEEccCCCC
Q psy18191        210 RNELGFARSKNATLDVAGKIST  231 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V~~~~~~  231 (238)
                         .|... ..+.|.|..++..
T Consensus        82 ---~g~~~-~~~~l~V~~~p~~   99 (103)
T 2e7b_A           82 ---FGDQT-TSATLTVTALPSG   99 (103)
T ss_dssp             ---CSSCB-CCBCEEEECCCCC
T ss_pred             ---ECCcE-EEEEEEEEecccc
Confidence               66665 4888999887654

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.43  E-value=6.6e-13  Score=107.09  Aligned_cols=144  Identities=13%  Similarity=0.022  Sum_probs=95.1

Q ss_pred             cEEEecccccccc----ceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCE-EEeCCC
Q psy18191         65 ICLRFQDLLPQSK----QGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPR-ITEHPA  139 (238)
Q Consensus        65 ~~~w~~~~~~~~~----~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~-i~~~~~  139 (238)
                      .+.|++++.....    .+...|.+.++...|+|.|+|.+.+...  ..      .  ..   +.+.+..+|. +...+.
T Consensus        31 ~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~------~--~~---~~l~V~~~~~~~~~~~~   97 (289)
T 3ejj_X           31 SVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPM--AG------S--TT---IHLYVKDPAHSWNLLAQ   97 (289)
T ss_dssp             CCEEECSCSSSSEECCCSSCCEEEESSCCGGGCEEEEEECCC-------------C--EE---EEEEECCSSCSEEESCS
T ss_pred             cEEEccCCCceEEEeccCCccEEEEeeeccccCEEEEEEEeccCC--cc------e--eE---EEEEEeCCCcceecccc
Confidence            4899987653211    2235678889999999999987665322  10      0  11   1111333443 555667


Q ss_pred             ceEEeCCCcEEEEEEEeeeCCCE-EEEEe-CCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC-CCce
Q psy18191        140 SAVVPRHEPTTLNCKADGYPEPR-IEWYK-DGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE-LGFA  216 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~p~-i~W~~-~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~-~G~~  216 (238)
                      ...+.+|+++.|.|.+.+.|.+. +.|++ ++..+..  ........++.|.    |..+..+|+|.|+|.|.|. .+..
T Consensus        98 ~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~L~----i~~v~~~d~G~Y~C~a~~~~~~~~  171 (289)
T 3ejj_X           98 EVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLR--KTVYFFSPWRGFI----IRKAKVLDSNTYVCKTMVNGREST  171 (289)
T ss_dssp             EEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCT--TCCEEEETTTEEE----ESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eEEEecCCceEeEEEccCCCcceEEEEEecCCeecCC--CccEEECCCCCEE----EeecccccCEEEEEEEEeCCCccc
Confidence            88899999999999999887775 99986 6666543  2333334456665    5666999999999999954 4444


Q ss_pred             eEEEEEEEEccC
Q psy18191        217 RSKNATLDVAGK  228 (238)
Q Consensus       217 ~s~~~~L~V~~~  228 (238)
                       +..+.|.|...
T Consensus       172 -~~~~~l~V~~~  182 (289)
T 3ejj_X          172 -STGIWLKVNRV  182 (289)
T ss_dssp             -CCCEEEEEESS
T ss_pred             -cccEEEEEEEC
Confidence             45888888753

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.43  E-value=7.8e-13  Score=99.53  Aligned_cols=98  Identities=26%  Similarity=0.452  Sum_probs=71.3

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      +|.|...|.+..+.+|+++.|.|.+.|.|.|.+.|++++..+... .................|..++.+|+|.|+|.|.
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   80 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNL-DQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE   80 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSS-EEEEEEEETTEEEEEEEESSCCGGGCEEEEEEES
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCC-CceEEEecCCCceEEEEEeecCcccCeEEEEEEE
Confidence            467777788899999999999999999999999999999988753 1222222232222233377889999999999999


Q ss_pred             eCCCceeEEEEEEEEccCC
Q psy18191        211 NELGFARSKNATLDVAGKI  229 (238)
Q Consensus       211 N~~G~~~s~~~~L~V~~~~  229 (238)
                      |..|...+..+.|.|..+|
T Consensus        81 ~~~~~~~~~~~~l~V~~~p   99 (182)
T 1rhf_A           81 DGGETEISQPVWLTVEGVP   99 (182)
T ss_dssp             SCTTCEECCCEEEEEECSC
T ss_pred             cCCCcEEEEEEEEEEecCC
Confidence            9988755568888887655

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.42  E-value=3.8e-13  Score=105.45  Aligned_cols=127  Identities=13%  Similarity=0.151  Sum_probs=78.5

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee-C
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY-P  159 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P  159 (238)
                      ..|.+.++..+|+|.|+|...+..  +.   ....  ...+. +.. ...+|.+...+....+.+|+.+.|.|.+.|. |
T Consensus        94 ~~L~I~~v~~~D~G~Y~C~~~~~~--~~---~~~~--~~~l~-V~~-~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p  164 (237)
T 3sob_L           94 FTLTISSLQPEDFATYYCQQSYTT--PP---TFGQ--GTKVE-IKR-TVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYP  164 (237)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSS--SC---EECC--CEEEE-EEC-CCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBS
T ss_pred             EEEEECCCChhhCeEEEEeeccCC--ce---EEcC--cEEEE-Eec-CCCCCceEEeCCChhhccCCceEEEEEEcccCC
Confidence            457888899999999997765532  10   0000  01111 111 3567888765554445568899999999885 4


Q ss_pred             -CCEEEEEeCCEEeeccC--CccEEEecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        160 -EPRIEWYKDGSLVSAEI--GSHRILLPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       160 -~p~i~W~~~g~~l~~~~--~~~~~~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                       .|.+.|+++|..+....  ........++...+  ...|..+..+|.|.|+|.|.|.....
T Consensus       165 ~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  226 (237)
T 3sob_L          165 REAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS  226 (237)
T ss_dssp             SCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             CceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCC
Confidence             48999999999886420  00001112343322  12245557788999999999998654

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.42  E-value=2.3e-12  Score=102.74  Aligned_cols=144  Identities=13%  Similarity=0.146  Sum_probs=81.0

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceeccee---------------cCCccCCEEEeCCCceEEeC
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVH---------------GDGYRVPRITEHPASAVVPR  145 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~---------------~~v~~~P~i~~~~~~~~~~~  145 (238)
                      ..|.|.++.++|+|.|.|.+.+...  .+.-.....  ..+.+..               .....+|.+...|....+.+
T Consensus        76 ~sL~I~~v~~~DsG~Y~C~~~~~~~--~~~~~~~~~--~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~  151 (256)
T 3tf7_C           76 FHLRKASVHRSDSAVYFCAVSAKGT--GSKLSFGKG--AKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVT  151 (256)
T ss_dssp             EEEEESSCCGGGCSEEEEEEECTTC--TTCEEECCC--EEEEEEC---------------------CCEEESCSEEEEET
T ss_pred             EEEEECCCCcccCEEEEEEEecCCC--ccceEECCC--eEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeC
Confidence            3578888899999999977655321  110111100  0111000               00234677888888888999


Q ss_pred             CCcEEEEEEEeeeCCCEEEEEeCC--EEe---ec--cC--------CccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        146 HEPTTLNCKADGYPEPRIEWYKDG--SLV---SA--EI--------GSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       146 G~~~~L~C~~~g~P~p~i~W~~~g--~~l---~~--~~--------~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      |+++.|.|.+.+. .|.+.|++..  ..+   ..  ..        ..+............+.|..++.+|+|.|.|.|.
T Consensus       152 G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~  230 (256)
T 3tf7_C          152 GENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASS  230 (256)
T ss_dssp             TCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEE
T ss_pred             CCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEec
Confidence            9999999999887 7899999832  111   10  00        0010011011001112377889999999999999


Q ss_pred             eCCCceeE-EEEEEEEccCC
Q psy18191        211 NELGFARS-KNATLDVAGKI  229 (238)
Q Consensus       211 N~~G~~~s-~~~~L~V~~~~  229 (238)
                      |..|.... .-..|.|....
T Consensus       231 n~~g~~~fG~gt~l~v~~~~  250 (256)
T 3tf7_C          231 DAPGQLYFGEGSKLTVLELE  250 (256)
T ss_dssp             EETTEEEECCCEEEEEECGG
T ss_pred             CCCCccEECCCeEEEEEccc
Confidence            98765421 13356665544

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.42  E-value=2.5e-12  Score=104.51  Aligned_cols=97  Identities=28%  Similarity=0.402  Sum_probs=77.5

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEe-cCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      .+|.|...|.++.+.+|+++.|.|.+.|.|.|.+.|++++..+........+.. .++...+  .|..++.+|+|.|+|.
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L--~i~~v~~~d~G~Y~C~   80 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL--IIASVTDDDATVYQVR   80 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEE--EESSCCGGGCSEEEEE
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEE--EEccCChhhCeEEEEE
Confidence            589999999999999999999999999999999999999998875422233322 3332222  2677899999999999


Q ss_pred             EEeCCCceeEEEEEEEEccCC
Q psy18191        209 ARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      |.|..|... ..+.|.|..++
T Consensus        81 a~n~~g~~~-~~~~l~V~~~p  100 (305)
T 2nzi_A           81 ATNQGGSVS-GTASLEVEVPA  100 (305)
T ss_dssp             EEETTEEEE-EEEEEEECEEE
T ss_pred             EEcCCCCcc-ceEEEEEecCC
Confidence            999999885 58899987654

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.42  E-value=1.9e-12  Score=98.54  Aligned_cols=99  Identities=16%  Similarity=0.250  Sum_probs=75.2

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEe-eeCCCEEEEEeCCEEeeccCC-ccEEEecCC---cE--EEEEeecCCCCCCCe
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIG-SHRILLPAG---SL--FFLSLVHGKKDTDSG  203 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~-g~P~p~i~W~~~g~~l~~~~~-~~~~~~~~~---~l--~~~~vi~~v~~~d~G  203 (238)
                      +|.|...|.+..+.+|+++.|.|.+. |.|.|.+.|+++|..+..... ..++....+   ..  ...+.|..++.+|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            67888889999999999999999999 999999999999998875311 112222221   11  122237788999999


Q ss_pred             EEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        204 VYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       204 ~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      .|+|.|.|..|...+..+.|.|..+|
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~~~p  107 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLEGLP  107 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECCSC
T ss_pred             EEEEEEEeCCCceecccEEEEEecCC
Confidence            99999999988876555888887665

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.41  E-value=7.8e-13  Score=102.13  Aligned_cols=126  Identities=13%  Similarity=0.126  Sum_probs=71.7

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee---
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY---  158 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~---  158 (238)
                      .|.|.++...|+|.|.|...+..  +  ...........+.+  .....+|.+.. +..  +.+|+.+.|.|.+.|.   
T Consensus        83 sL~I~~v~~~D~G~Y~C~~~~~~--~--~~~~~~~~~~~l~V--~~~~~~p~i~~-~~~--~~~G~~v~L~C~~~~~~~~  153 (214)
T 2zg1_A           83 SLSIGDARMEDTGSYFFRVERGR--D--VKYSYQQNKLNLEV--TALIEKPDIHF-LEP--LESGRPTRLSCSLPGSCEA  153 (214)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETT--T--EEEECCSSCEEEEE--ECCCCCCEEC---CC--CCTTCCEEEEEECTTCCSC
T ss_pred             EEEEccCCHhhCceEEEEEEcCC--C--ceeeecCCceEEEE--ecCCCCCceec-Ccc--ccCCCeEEEEEEeccCCCC
Confidence            46777788888888886654421  0  00000111111221  11223566644 222  5789999999999764   


Q ss_pred             -CCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCcee-EEEEEEEE
Q psy18191        159 -PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR-SKNATLDV  225 (238)
Q Consensus       159 -P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~-s~~~~L~V  225 (238)
                       |.|.+.|++++..+..   ..  ....+.|.    |..+..+|.|.|+|.|.|..|... +..+.|.|
T Consensus       154 ~p~p~v~W~~~~~~~~~---~~--~~~~~~L~----i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V  213 (214)
T 2zg1_A          154 GPPLTFSWTGNALSPLD---PE--TTRSSELT----LTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV  213 (214)
T ss_dssp             SSCCEEEEESSTTSSSC---SS--CCCSSEEE----ECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred             CCCceEEEeCCCCccCC---CC--ceeEEEEE----EecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence             8999999999865321   11  12234454    455588899999999999875432 23555544

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.41  E-value=4e-13  Score=104.16  Aligned_cols=126  Identities=10%  Similarity=0.092  Sum_probs=76.1

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee-CC
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY-PE  160 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~  160 (238)
                      .|.|.++..+|+|.|.|.+.+..  | .. .....  ..+.  ......+|.+...+.......|+.+.|.|.+.|. |.
T Consensus        73 ~L~I~~v~~~D~G~Y~C~~~~~~--~-~~-~~~~~--~~l~--V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~  144 (216)
T 2xzc_L           73 TLGITGLQTGDEADYYCGTWDSS--L-NP-VFGGG--TKLE--IKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPR  144 (216)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTT--S-CE-EEBCC--EEEE--ECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSS
T ss_pred             EEEECCCCcccCEEEEEEEEeCC--C-cc-eECCC--EEEE--EcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCC
Confidence            67888888999999998776532  1 00 00000  1111  1112357877664333223468899999999884 55


Q ss_pred             C-EEEEEeCCEEeeccCCccEE---EecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        161 P-RIEWYKDGSLVSAEIGSHRI---LLPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       161 p-~i~W~~~g~~l~~~~~~~~~---~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      | .+.|+++|..+.... ....   ...++....  .+.|..+..+|.|.|+|.|.|.....
T Consensus       145 ~~~v~W~k~g~~~~~~~-~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  205 (216)
T 2xzc_L          145 EAKVQWKVDNALQSGNS-QESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS  205 (216)
T ss_dssp             CCEEEEEETTEECCSSE-EEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             ceEEEEEECCeecCCCe-eEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence            4 899999999876320 0111   112333221  22255558889999999999987654

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.41  E-value=5.5e-13  Score=107.71  Aligned_cols=142  Identities=15%  Similarity=0.032  Sum_probs=94.3

Q ss_pred             EEEecccccc---cc-ceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCE-EEeCCCc
Q psy18191         66 CLRFQDLLPQ---SK-QGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPR-ITEHPAS  140 (238)
Q Consensus        66 ~~w~~~~~~~---~~-~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~-i~~~~~~  140 (238)
                      +.|+++..+-   .. .....|.+.++...|+|.|+|.+.+...  ....           .+.+.+..+|. +...+..
T Consensus        32 v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~--~~~~-----------~~~l~V~~~~~~~~~~~~~   98 (292)
T 4dkd_C           32 VEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPL--GGSA-----------AIHLYVKDPARPWNVLAQE   98 (292)
T ss_dssp             CCBCCCCCSSCEECCBTTEEEEEESSCCGGGCSCEEECCCC------CCE-----------EECCEECCSSCCEEESCSE
T ss_pred             eEEccCCCCceEEeccCceEEEEEcccccccCEEEEEEEccCCC--Ccce-----------EEEEEEcCccccccccCCe
Confidence            7788765421   11 1235788899999999999987665321  1111           11112334444 3455677


Q ss_pred             eEEeCCCcEEEEEEEeeeCC--CEEEEEeC-CEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        141 AVVPRHEPTTLNCKADGYPE--PRIEWYKD-GSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~~g~P~--p~i~W~~~-g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      ..+.+|+.+.|.|.+.+ |.  |.+.|+++ +..+..  ........++.|.    |..+..+|+|.|+|.|.|..|...
T Consensus        99 ~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~L~----i~~~~~~d~G~Y~C~a~n~~~~~~  171 (292)
T 4dkd_C           99 VVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMR--HTNYSFSPWHGFT----IHRAKFIQSQDYQCSALMGGRKVM  171 (292)
T ss_dssp             EEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCS--SCCEECCSSSCCE----ETTCCGGGCSEEEEEECSTTSCEE
T ss_pred             EEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCcccc--CCcccccCCceEE----ECCCCHHHCeEEEEEEEeCCCcee
Confidence            88999999999999987 54  78999997 444432  2222233344554    667799999999999999988775


Q ss_pred             EEEEEEEEcc
Q psy18191        218 SKNATLDVAG  227 (238)
Q Consensus       218 s~~~~L~V~~  227 (238)
                      +..+.|.|..
T Consensus       172 s~~~~l~V~~  181 (292)
T 4dkd_C          172 SISIRLKVQK  181 (292)
T ss_dssp             CCCEEEEEEC
T ss_pred             EEEEEEEEeC
Confidence            5588888876

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.41  E-value=6e-13  Score=102.79  Aligned_cols=123  Identities=15%  Similarity=0.177  Sum_probs=75.7

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee-CC
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY-PE  160 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~  160 (238)
                      .|.|.++..+|+|.|.|.+.+....|         ....+. +......+|.+...+....+.+|+.+.|.|.+.|. |.
T Consensus        79 ~L~I~~v~~~D~G~Y~C~~~~~~~~~---------~~~~l~-V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~  148 (210)
T 3d9a_H           79 YLDLNSVTTEDTATYYCANWDGDYWG---------QGTLVT-VSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPE  148 (210)
T ss_dssp             EEEECSCCGGGCEEEEEEETTSSCBC---------CCEEEE-ECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSS
T ss_pred             EEEECCCCcccCEEEEEEEecCcccc---------cceEEE-eccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecC
Confidence            67788888888888887776532111         011111 11112346776654433446789999999999987 88


Q ss_pred             C-EEEEEeCCEEeeccCCccEEEecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        161 P-RIEWYKDGSLVSAEIGSHRILLPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       161 p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      | .+.|++++..+........ . .++....  ...|..+..+| |.|+|.|.|..|...
T Consensus       149 p~~v~W~~~~~~~~~~~~~~~-~-~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  205 (210)
T 3d9a_H          149 PVTVTWNSGSLSSGVHTFPAV-L-QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK  205 (210)
T ss_dssp             CCEEEEGGGTBCTTEEECCCE-E-ETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEE
T ss_pred             CcEEEEeeCCcccceEEcCCc-c-CCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence            8 9999999875422111111 1 1232211  12245556656 999999999998864

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.41  E-value=2.9e-12  Score=105.38  Aligned_cols=132  Identities=12%  Similarity=0.094  Sum_probs=84.3

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEe--CCCceEEeCC---CcEEEEEE-E
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITE--HPASAVVPRH---EPTTLNCK-A  155 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~--~~~~~~~~~G---~~~~L~C~-~  155 (238)
                      .|.+.++...|+|.|+|..... ..|           .....+.+.+..+|.+..  .+....+.+|   +.+.|.|. +
T Consensus        93 ~L~I~~v~~~D~G~Y~C~~~~~-~~~-----------~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~  160 (331)
T 3u83_A           93 TIRLSRLELEDEGVYICEFATF-PTG-----------NRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSA  160 (331)
T ss_dssp             CEEECSCCGGGCEEEEEEEEEE-TTE-----------EEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEE
T ss_pred             eEEEcccCcccCcEEEEEEEec-CCC-----------ccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEec
Confidence            3666677777777777652211 111           111122233456776633  4566788888   77999998 8


Q ss_pred             eeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEE--EeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        156 DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL--SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       156 ~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~--~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      .|.|.|.+.|++++.....   .......++.+.+.  ..|..+..+|+|.|+|.|.|..|... ..+.|.|..+|
T Consensus       161 ~~~p~~~i~W~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~-~~~~l~V~~~P  232 (331)
T 3u83_A          161 NGKPPSVVSWETRLKGEAE---YQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFK-ESLTLNVQYEP  232 (331)
T ss_dssp             EEBSCCEEEEEESSCCEEE---EEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEE-EEEECCEEEEE
T ss_pred             CCcCCceEEEEcCCCCccc---cceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcce-eeEEEEEecCC
Confidence            8999999999996322221   11222334444332  23667789999999999999999875 58888875443

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.41  E-value=4.8e-13  Score=106.29  Aligned_cols=125  Identities=10%  Similarity=0.096  Sum_probs=75.6

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeC-C
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYP-E  160 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P-~  160 (238)
                      .|.+.++..+|+|.|+|.+.+...  .   .....    ..........+|.+...+.......|+.+.|.|.+.|.+ +
T Consensus       114 ~L~I~~v~~~D~G~Y~C~a~n~~~--~---~~~~~----~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~  184 (254)
T 2c1o_A          114 TLKISRVEAEDLGIYYCVQGSHFP--P---TFGAG----TKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPK  184 (254)
T ss_dssp             EEEESSCCGGGCSEEEEEECSSSS--C---EEBCC----EEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSS
T ss_pred             EEEECcCCcccCEEEEEEEEcCcc--e---EecCC----EEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCC
Confidence            678888888999999977765311  0   00000    011111133578777644433334688999999998854 4


Q ss_pred             -CEEEEEeCCEEeeccCCccEEE---ecCCcE--EEEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        161 -PRIEWYKDGSLVSAEIGSHRIL---LPAGSL--FFLSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       161 -p~i~W~~~g~~l~~~~~~~~~~---~~~~~l--~~~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                       +.++|+++|..+.... .....   ..++..  ...+.|..+..+|+|.|+|.|.|.....
T Consensus       185 ~~~v~W~k~g~~l~~~~-~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          185 DINVKWKIDGSERQNGV-LNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             CCEEEEEESSSEECTTE-EEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             CcEEEEEECCCcccCcc-eeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence             4699999998876420 01111   112221  1122355668899999999999988654

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.40  E-value=8.6e-13  Score=107.62  Aligned_cols=132  Identities=13%  Similarity=0.089  Sum_probs=80.0

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCE--EEeCCCceEEeCCCcEEEEEEE-eee
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPR--ITEHPASAVVPRHEPTTLNCKA-DGY  158 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~--i~~~~~~~~~~~G~~~~L~C~~-~g~  158 (238)
                      .|.|.++..+|+|.|+|.+.+. ..|....           .....+..+|.  +...+.......|+.+.|.|.+ .|.
T Consensus        75 sL~I~~v~~~D~G~Y~C~a~n~-~~~~~~~-----------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~  142 (308)
T 4fom_A           75 TITLHNIGFSDSGKYICKAVTF-PLGNAQS-----------STTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGK  142 (308)
T ss_dssp             CEEECSCCGGGCEEEEEEEEET-TTEEEEE-----------EEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEB
T ss_pred             EEEEccCCHHHCEEEEEEEeeC-CCcceee-----------eeEEEeeeccccccccccceeEEcCCceEEEEEEecCCc
Confidence            3677788888888888655432 1111111           11111223333  2334555556678899999985 789


Q ss_pred             CCCEEEEEeCCEEeeccCCccEEEecCCcE--EEEEeecCCCCCCCeEEEEEEEeCCCcee-EEEEEEEEccCC
Q psy18191        159 PEPRIEWYKDGSLVSAEIGSHRILLPAGSL--FFLSLVHGKKDTDSGVYWCVARNELGFAR-SKNATLDVAGKI  229 (238)
Q Consensus       159 P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l--~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~-s~~~~L~V~~~~  229 (238)
                      |.|.++|++++..+...    ......+..  .....|..+...|.|.|+|.|.|..|... ...+.|.|..+|
T Consensus       143 P~~~i~W~~~~~~~~~~----~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P  212 (308)
T 4fom_A          143 PVAHIDWEGDLGEMEST----TTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAP  212 (308)
T ss_dssp             SCCEEEECCCSSBCCEE----EEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEE
T ss_pred             CCceEEEEECCcccccc----cceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCC
Confidence            99999999999877532    112222222  11233677799999999999999887653 235556555443

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.40  E-value=4.1e-12  Score=102.88  Aligned_cols=142  Identities=15%  Similarity=0.199  Sum_probs=82.2

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCC-ceEEeCCCCcceecceecC----------CccCCEEEeCCCceEEeCCCcE
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGL-PLKKYHPPSLPLFPGVHGD----------GYRVPRITEHPASAVVPRHEPT  149 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~-y~c~~~~~~~~~~~~~~~~----------v~~~P~i~~~~~~~~~~~G~~~  149 (238)
                      ..|.|.++.++|+|.|.|...+..  |. +.-.+..  ...+.+....          ...+|.+...|..+.+.+|+++
T Consensus       105 ~sL~I~~v~~~DsG~Y~C~~~n~~--g~~~~~~~~~--~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v  180 (282)
T 1qok_A          105 AYLQLSSLTSEDTAVYYCNEGTPT--GPYYFDYWGQ--GTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKV  180 (282)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSS--SSCCCEEECC--CEEEEEEC---------------CCCEEEECSEEEECTTCCE
T ss_pred             EEEEECcCChhhCEEEEEEeccCC--CccceeeeCC--CEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcE
Confidence            457888888899999987766532  10 0000000  0011100000          0124556666777889999999


Q ss_pred             EEEEEEeeeCCCEEEEEe--CCEEeec---c-------CCccEEE-ecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        150 TLNCKADGYPEPRIEWYK--DGSLVSA---E-------IGSHRIL-LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       150 ~L~C~~~g~P~p~i~W~~--~g~~l~~---~-------~~~~~~~-~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      +|.|.+.+.| |.+.|+|  +|..+..   .       ...+... .......  +.|..+..+|+|.|.|.|.|..+..
T Consensus       181 ~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--L~I~~v~~~DsG~Y~C~a~~~~~~~  257 (282)
T 1qok_A          181 TITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYS--LTISRMEAEDAATYYCQQRSSYPLT  257 (282)
T ss_dssp             EEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEE--EEESSCCGGGCEEEEEEECSSSSCE
T ss_pred             EEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEE--EEEccCChhHCEEEEEEEeeCCCce
Confidence            9999999999 9999999  5544310   0       0111111 1122222  2378889999999999999865433


Q ss_pred             eEEEEEEEEccCC
Q psy18191        217 RSKNATLDVAGKI  229 (238)
Q Consensus       217 ~s~~~~L~V~~~~  229 (238)
                      ......|.|.+..
T Consensus       258 fg~gt~l~V~~~~  270 (282)
T 1qok_A          258 FGAGTKLELKRAA  270 (282)
T ss_dssp             ECCCEEEEEC---
T ss_pred             EeCCEEEEEeccc
Confidence            3345677776543

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.39  E-value=5.5e-12  Score=101.74  Aligned_cols=142  Identities=13%  Similarity=0.149  Sum_probs=77.0

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecC---------CccCCEEEeCCCceEEeCCCcEEEE
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGD---------GYRVPRITEHPASAVVPRHEPTTLN  152 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~---------v~~~P~i~~~~~~~~~~~G~~~~L~  152 (238)
                      .|.|.++.++|+|.|.|.+.+...  ...     .....+.+....         ...++.+...|....+.+|+++.|.
T Consensus        83 ~L~I~~v~~~DsG~Y~C~~~n~~~--~~~-----~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~  155 (276)
T 3auv_A           83 TLTISSLQPEDFATYYCQQHYTTP--PTF-----GCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLS  155 (276)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSS--CCC-----CCCEEEEC-----------------CCEEEEECCEEECTTCCEEEE
T ss_pred             EEEEccCChhhCEEEEEEEecCCc--ccc-----cCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEE
Confidence            678888899999999977765321  000     000111100000         0012223334567889999999999


Q ss_pred             EEEeeeC--CCEEEEEeCC--EEe---e---c---------cCCccEEEecC-CcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        153 CKADGYP--EPRIEWYKDG--SLV---S---A---------EIGSHRILLPA-GSLFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       153 C~~~g~P--~p~i~W~~~g--~~l---~---~---------~~~~~~~~~~~-~~l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      |.+.|.|  .|.+.|++++  ..+   .   .         ....+.....+ ......+.|..++.+|+|.|.|.|.|.
T Consensus       156 C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          156 CAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             EEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence            9999876  5899999963  211   1   0         00112111111 001112237788999999999999998


Q ss_pred             C---Cc-eeEEEEEEEEccCCC
Q psy18191        213 L---GF-ARSKNATLDVAGKIS  230 (238)
Q Consensus       213 ~---G~-~~s~~~~L~V~~~~~  230 (238)
                      .   +. .......|.|.+.+.
T Consensus       236 ~~~~~~~~fg~gt~l~V~~~~~  257 (276)
T 3auv_A          236 FLPYAMDYWGQGTLVTVSSASA  257 (276)
T ss_dssp             STTCSCCCBCCCEEEEEC----
T ss_pred             cCCcCceEECCCEEEEEccccc
Confidence            3   21 111245777765443

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.38  E-value=2.8e-13  Score=123.62  Aligned_cols=148  Identities=16%  Similarity=0.113  Sum_probs=31.5

Q ss_pred             CccEEEecccccccc-----------------ceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceeccee
Q psy18191         63 KPICLRFQDLLPQSK-----------------QGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVH  125 (238)
Q Consensus        63 ~~~~~w~~~~~~~~~-----------------~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~  125 (238)
                      .+.+.|++++.....                 .....|.+..+..+|+|.|+|.+.+..  |.           ....+.
T Consensus       255 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~--~~-----------~~~~~~  321 (772)
T 3v2a_R          255 GIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL--MT-----------KKNSTF  321 (772)
T ss_dssp             CCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSS--CE-----------EEEEEE
T ss_pred             ceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCC--cc-----------eeEEEE
Confidence            457999998764221                 112467788899999999998776532  21           111111


Q ss_pred             cCCccCCEEEeCC---CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCC
Q psy18191        126 GDGYRVPRITEHP---ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDS  202 (238)
Q Consensus       126 ~~v~~~P~i~~~~---~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~  202 (238)
                      +.+..+|.+...+   ....+.+|+.+.|.|.+.|.|.|.+.|+++|..+...   ..+ ...+.|.+    ..+..+|+
T Consensus       322 l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~---~~~-~~~~~L~i----~~v~~~d~  393 (772)
T 3v2a_R          322 VRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESN---HTI-KAGHVLTI----MEVSERDT  393 (772)
T ss_dssp             EEEECCCC------------------------------------------------------------------------
T ss_pred             EEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCC---ceE-ccceeEEE----ecCChhcC
Confidence            2244566654332   3567889999999999999999999999999887642   111 12355554    44599999


Q ss_pred             eEEEEEEEeCCCcee-EEEEEEEEccCCCC
Q psy18191        203 GVYWCVARNELGFAR-SKNATLDVAGKIST  231 (238)
Q Consensus       203 G~Y~C~a~N~~G~~~-s~~~~L~V~~~~~~  231 (238)
                      |.|+|.|.|..|... +..+.|.|..+|..
T Consensus       394 G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~  423 (772)
T 3v2a_R          394 GNYTVILTNPISKEKQSHVVSLVVYVPPQI  423 (772)
T ss_dssp             ------------------------------
T ss_pred             ceEEEEEEECCcCeEEEEEEEEEEecCCcc
Confidence            999999999998753 24667777666544

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.38  E-value=3.1e-12  Score=98.31  Aligned_cols=100  Identities=55%  Similarity=0.888  Sum_probs=78.7

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCC---ccEEEecCCcEEEEE-eecCCCCCCCeE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---SHRILLPAGSLFFLS-LVHGKKDTDSGV  204 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~---~~~~~~~~~~l~~~~-vi~~v~~~d~G~  204 (238)
                      ..+|.|...|.++.+.+|+++.|.|.+.|.|.|.+.|++++..+.....   ..+....++.+.+.. .|..+..+|+|.
T Consensus         7 ~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   86 (212)
T 2v9r_A            7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV   86 (212)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEE
T ss_pred             cCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeE
Confidence            4688999989999999999999999999999999999999998865321   234455566665432 245678999999


Q ss_pred             EEEEEEeCCCceeEEEEEEEEccC
Q psy18191        205 YWCVARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       205 Y~C~a~N~~G~~~s~~~~L~V~~~  228 (238)
                      |+|.|.|..|...+..+.|.|...
T Consensus        87 Y~C~~~n~~g~~~~~~~~l~V~~~  110 (212)
T 2v9r_A           87 YVCVARNYLGEAVSHDASLEVAIL  110 (212)
T ss_dssp             EEEEEEETTEEEECCCEEEEECEE
T ss_pred             EEEEEECCCCceeecceEEEEEec
Confidence            999999999887445777877653

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.37  E-value=3e-12  Score=88.51  Aligned_cols=91  Identities=22%  Similarity=0.331  Sum_probs=67.0

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .+|.|...+.+..+.+|+++.|.|.+.+.  |.+.|++++..+... ....+ ..++.... +.|..++.+|+|.|+|.|
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~-~~~~~-~~~~~~~~-L~I~~v~~~D~G~Y~C~a   81 (108)
T 2dm7_A            7 GPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDG-GRYSL-KQDGTRCE-LQIHDLSVADAGEYSCMC   81 (108)
T ss_dssp             CCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSS-SSCEE-EEETTEEE-EEESSCCTTTCSEEEEEE
T ss_pred             CCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCC-CCEEE-EecCCEEE-EEECCCCcccCEEEEEEE
Confidence            67888877888999999999999999765  789999999887642 22222 23343221 237788999999999999


Q ss_pred             EeCCCceeEEEEEEEEccCCC
Q psy18191        210 RNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      .|    .. ..+.|.|..++.
T Consensus        82 ~n----~~-~~~~l~V~~~p~   97 (108)
T 2dm7_A           82 GQ----ER-TSATLTVRALPA   97 (108)
T ss_dssp             TT----EE-EEEECEEECCCS
T ss_pred             cC----CE-EEEEEEEecCCH
Confidence            44    43 488888877543

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.37  E-value=1.4e-12  Score=92.72  Aligned_cols=91  Identities=20%  Similarity=0.307  Sum_probs=63.9

Q ss_pred             CCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeec------cCCcc-EEE-ecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        137 HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA------EIGSH-RIL-LPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~------~~~~~-~~~-~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      .+..+.+.+|+++.|.|.+.+.|.|.+.|++++..+..      ....+ ... ...+...  +.|..++.+|+|.|.|.
T Consensus         7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--L~I~~v~~~DsG~Y~C~   84 (124)
T 3rbg_A            7 HTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLS--ITVPNVTLQDEGVYKCL   84 (124)
T ss_dssp             SEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEE--EEESSCCGGGCEEEEEE
T ss_pred             CCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEE--EEECCCChHHCEEEEEE
Confidence            34568889999999999999999999999986543321      00111 111 1112222  23788899999999999


Q ss_pred             EEeCCCceeEEEEEEEEccCCCC
Q psy18191        209 ARNELGFARSKNATLDVAGKIST  231 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~~~~~  231 (238)
                      |.|. |... ..+.|.|..+|..
T Consensus        85 a~n~-g~~~-~~~~l~V~~~P~~  105 (124)
T 3rbg_A           85 HYSD-SVST-KEVKVIVLATMKG  105 (124)
T ss_dssp             EESS-SEEE-EEEEEEEECC---
T ss_pred             EEcC-CCCc-EEEEEEEEeCCCC
Confidence            9999 8886 5999999887654

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.37  E-value=3.3e-12  Score=98.56  Aligned_cols=132  Identities=12%  Similarity=0.006  Sum_probs=80.1

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEE-eeeCC
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKA-DGYPE  160 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~-~g~P~  160 (238)
                      .|.|.++..+|+|.|+|.+.+..  |...          .......+..+|.+...+.......++.+.+.|.+ .+.|+
T Consensus        84 sL~I~~v~~~D~G~Y~C~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~  151 (225)
T 4fmk_A           84 TLAFRGLRVEDEGNYTCEFATFP--NGTR----------RGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPP  151 (225)
T ss_dssp             CEEECSCCGGGCEEEEEEEEEET--TEEE----------EEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSC
T ss_pred             EEEEccCCHHHCcceEEEEEeCC--Ccce----------eeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCC
Confidence            36777888888888887654421  1100          01111113345555555455556677777777765 67788


Q ss_pred             CEEEEEeCCEEeeccCCccEEEecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCcee-EEEEEEEEcc
Q psy18191        161 PRIEWYKDGSLVSAEIGSHRILLPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGFAR-SKNATLDVAG  227 (238)
Q Consensus       161 p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~~~-s~~~~L~V~~  227 (238)
                      |.+.|++++..+...  .......++....  .+.|..+..+|.|.|+|.|.|..|... +.+++|.|+.
T Consensus       152 ~~~~w~~~~~~~~~~--~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y  219 (225)
T 4fmk_A          152 ARITWISSLGGEAKD--TQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRY  219 (225)
T ss_dssp             CEEEEECSSCCEEEE--EEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTT
T ss_pred             CEEEEEECCccccCC--cceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEE
Confidence            999999987665431  1222233444322  233677799999999999999988763 2355565544

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.36  E-value=5.3e-12  Score=103.29  Aligned_cols=131  Identities=14%  Similarity=0.065  Sum_probs=84.2

Q ss_pred             EEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEE-eeeCCC
Q psy18191         83 LVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKA-DGYPEP  161 (238)
Q Consensus        83 l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~-~g~P~p  161 (238)
                      |.|.++..+|+|.|+|..... ..|.           ....+.+.+..+|.+...+....+..|+.+.|.|.+ .|.|.|
T Consensus        81 L~I~~v~~~D~G~Y~C~v~~~-~~~~-----------~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~  148 (313)
T 4fqp_A           81 LRMFGLRVEDEGNYTCLFVTF-PQGS-----------RSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPA  148 (313)
T ss_dssp             EEECSCCGGGCEEEEEEEECS-SSCE-----------EEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCC
T ss_pred             EEECcCChhhCEEEEEEEeec-cCcc-----------eeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCc
Confidence            667777777888887654321 1121           111222335677887776666777788899999986 478999


Q ss_pred             EEEEEeCCEEeeccCCccEEEecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCcee-EEEEEEEEcc
Q psy18191        162 RIEWYKDGSLVSAEIGSHRILLPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGFAR-SKNATLDVAG  227 (238)
Q Consensus       162 ~i~W~~~g~~l~~~~~~~~~~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~~~-s~~~~L~V~~  227 (238)
                      .+.|++++..+...  .......++...+  ...|..+...|.|.|+|.|.|..+... +..+.|.|..
T Consensus       149 ~i~W~~~~~~~~~~--~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~  215 (313)
T 4fqp_A          149 QITWHSDLGGMPNT--SQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYY  215 (313)
T ss_dssp             EEEEEETTCCEEEE--EEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCE
T ss_pred             EEEeecCCcccccc--ceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeeccccc
Confidence            99999999877642  1122223444332  233566788899999999999886642 2345555543

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.36  E-value=7.7e-13  Score=103.70  Aligned_cols=124  Identities=9%  Similarity=0.085  Sum_probs=64.2

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCC-
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPE-  160 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~-  160 (238)
                      .|.|.++..+|+|.|.|.+.+..  +...    . ....+.  ......+|.+...+.......|+.+.|.|.+.|.++ 
T Consensus        94 ~L~I~~v~~~D~G~Y~C~~~~~~--~~~~----~-~~~~l~--V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~  164 (233)
T 3bqu_C           94 VFTIENMLSEDVADYYCLQSDNL--PYTF----G-GGTNLE--IKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPK  164 (233)
T ss_dssp             EEC-----CCCCSEEEEEECSSS--SCCB----C-CCCBC-----CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSS
T ss_pred             EEEECCCCHHHCEEEEEEEecCC--ceee----c-CCEEEE--EeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCC
Confidence            68888999999999998776532  1000    0 000111  111224777766444333447999999999998644 


Q ss_pred             C-EEEEEeCCEEeeccCCccEE---EecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCc
Q psy18191        161 P-RIEWYKDGSLVSAEIGSHRI---LLPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGF  215 (238)
Q Consensus       161 p-~i~W~~~g~~l~~~~~~~~~---~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~  215 (238)
                      | .+.|+++|..+.... ....   ...++....  ...|..+..+|.|.|+|.|.|....
T Consensus       165 ~~~v~W~k~g~~~~~~~-~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          165 DINVKWKIDGSERQNGV-LNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             CEEEEEEEC-----CCE-EEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             ceEEEEEECCeeCCCCc-eEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            3 799999998775320 0111   012333221  2224555778999999999997644

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.36  E-value=7.7e-12  Score=94.32  Aligned_cols=95  Identities=17%  Similarity=0.276  Sum_probs=69.9

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      +|.|...+.+..+.+|+++.|.|.+.+.|.|.+.|++++..+............++.|.    |..++.+|+|.|+|.+.
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~----i~~~~~~d~G~Y~C~~~   77 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ----ILNINKSDEGIYRCEGR   77 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEE----ETTCCGGGCEEEEEEEE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEE----EeeCCHhHCcEEEEEEE
Confidence            67888888899999999999999999999999999999988765434444555566665    56679999999999999


Q ss_pred             eCCCce-eEEEEEEEEccCC
Q psy18191        211 NELGFA-RSKNATLDVAGKI  229 (238)
Q Consensus       211 N~~G~~-~s~~~~L~V~~~~  229 (238)
                      |..+.. ....+.|.|..++
T Consensus        78 ~~~~~~~~~~~~~l~v~~~p   97 (189)
T 2v5t_A           78 VEARGEIDFRDIIVIVNVPP   97 (189)
T ss_dssp             ETTTTEEEEEEEEEEEEEEE
T ss_pred             EcCCCceEEEEEEEEecCCC
Confidence            998543 2235566665443

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.36  E-value=2.8e-12  Score=99.82  Aligned_cols=97  Identities=28%  Similarity=0.438  Sum_probs=74.8

Q ss_pred             ccCCEEEeCC----CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCcc--EEEecCCcEEEEEeecCCCCCCC
Q psy18191        129 YRVPRITEHP----ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSH--RILLPAGSLFFLSLVHGKKDTDS  202 (238)
Q Consensus       129 ~~~P~i~~~~----~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~--~~~~~~~~l~~~~vi~~v~~~d~  202 (238)
                      ..+|.+...+    ....+.+|+++.|.|.+.|.|.|.+.|++++..+.......  ........|.    |..++.+|+
T Consensus        13 ~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~----i~~~~~~d~   88 (231)
T 3ojm_B           13 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI----MESVVPSDK   88 (231)
T ss_dssp             CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEE----ECSCCGGGC
T ss_pred             ccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEE----EecCCcccC
Confidence            3567776554    67889999999999999999999999999999887542211  2223334454    566699999


Q ss_pred             eEEEEEEEeCCCceeEEEEEEEEccCCC
Q psy18191        203 GVYWCVARNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       203 G~Y~C~a~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      |.|+|.|.|..|... ..+.|.|...+.
T Consensus        89 G~Y~C~~~n~~~~~~-~~~~l~V~~~~~  115 (231)
T 3ojm_B           89 GNYTCVVENEYGSIN-HTYHLDVVERSR  115 (231)
T ss_dssp             EEEEEEEEETTEEEE-EEEEEEEECCCC
T ss_pred             EEEEEEEecccCccc-ccEEEEEEcCCC
Confidence            999999999999986 588999876543

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.36  E-value=1.4e-12  Score=101.60  Aligned_cols=129  Identities=13%  Similarity=0.153  Sum_probs=76.8

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee-CC
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY-PE  160 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~  160 (238)
                      .|.|.++..+|+|.|.|...+..  |..... .......+. +......+|.+...+....+.+|+.+.|.|.+.|. |.
T Consensus        82 ~L~I~~v~~~D~G~Y~C~~~~~~--~~~~~~-~~~~~~~l~-V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~  157 (222)
T 1q9r_B           82 YLQMNTLRAEDSATYYCARDHDG--YYERFS-YWGQGTLVT-VSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPE  157 (222)
T ss_dssp             EEEECSCCGGGCEEEEEEECCCS--SCCSCC-CBCCCEEEE-ECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSS
T ss_pred             EEEECcCCcccCeEEEEEEeccC--Ccccce-EeCCceEEE-eccCCCCCCeEEEccccccccCCCcEEEEEEEccEECC
Confidence            57788888888888887665531  100000 000011111 11112346776654333345689999999999986 88


Q ss_pred             C-EEEEEeCCEEeeccCCccEEEecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        161 P-RIEWYKDGSLVSAEIGSHRILLPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       161 p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      | .+.|+++|..+...  .......++...+  .+.|..+...| |.|+|.|.|..|...
T Consensus       158 p~~v~W~~~g~~~~~~--~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~  214 (222)
T 1q9r_B          158 PVTVTWNSGSLSSGVH--TFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK  214 (222)
T ss_dssp             CCEEEEGGGTBCTTEE--EEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred             CCEEEEecCCeEcceE--eccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCc
Confidence            8 99999998765321  1111112332221  22366678889 999999999998864

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.36  E-value=3.9e-12  Score=109.23  Aligned_cols=154  Identities=10%  Similarity=0.008  Sum_probs=87.3

Q ss_pred             CCc-cEEEecccccccc--------ce----EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCc--ce---ecc
Q psy18191         62 PKP-ICLRFQDLLPQSK--------QG----LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSL--PL---FPG  123 (238)
Q Consensus        62 ~~~-~~~w~~~~~~~~~--------~g----~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~--~~---~~~  123 (238)
                      |.+ .+.|++++.....        .+    ...|.+..+..+| |.|+|.+.+................  ..   ...
T Consensus       152 P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~  230 (444)
T 1igt_B          152 PEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKC  230 (444)
T ss_dssp             SSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSC
T ss_pred             CCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCcccc
Confidence            455 8999998764211        12    1246666777677 8888776653221000001000000  00   000


Q ss_pred             eecCCccCCEE-EeCCCceE-EeCCCcEEEEEEEeeeC----CCEEEEEeCCEEeeccCCccEEEecCCcE--EEEEeec
Q psy18191        124 VHGDGYRVPRI-TEHPASAV-VPRHEPTTLNCKADGYP----EPRIEWYKDGSLVSAEIGSHRILLPAGSL--FFLSLVH  195 (238)
Q Consensus       124 ~~~~v~~~P~i-~~~~~~~~-~~~G~~~~L~C~~~g~P----~p~i~W~~~g~~l~~~~~~~~~~~~~~~l--~~~~vi~  195 (238)
                      ....+..+|.+ ...|.... +.+|+++.|.|.+.|.|    .+.++|++++..+............++..  ...+.|.
T Consensus       231 ~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~  310 (444)
T 1igt_B          231 PAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQ  310 (444)
T ss_dssp             CCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECC
T ss_pred             CCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEc
Confidence            00112346776 44443333 58899999999999984    36999999998875431111122223321  1122366


Q ss_pred             CCCCCCCeEEEEEEEeCCCce
Q psy18191        196 GKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      .+..+|.|.|+|.|.|..|..
T Consensus       311 ~v~~~d~G~Y~C~a~n~~~~~  331 (444)
T 1igt_B          311 HQDWMSGKEFKCKVNNKDLPA  331 (444)
T ss_dssp             HHHHHTTCEEEEEEECTTCSS
T ss_pred             HHHhccCCcEEEEEEcCCCCC
Confidence            668999999999999999876

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.35  E-value=1.1e-11  Score=104.16  Aligned_cols=94  Identities=27%  Similarity=0.373  Sum_probs=71.7

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEEeeccC---CccEEEecC---CcEEEEEeecCCCCCCC
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSLVSAEI---GSHRILLPA---GSLFFLSLVHGKKDTDS  202 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~l~~~~---~~~~~~~~~---~~l~~~~vi~~v~~~d~  202 (238)
                      +|.|.. +.+..+.+|+++.|.|.+.|.|.|.+.|+++  |..+....   ..+......   +.|.    |..+..+|+
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~----i~~v~~~D~   75 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLH----IKDVKLSDS   75 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEE----EESCCGGGC
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEE----EcccChhhC
Confidence            577776 5667888899999999999999999999999  88876421   122222211   2333    667799999


Q ss_pred             eEEEEEEEeCCCceeEEEEEEEEccCCC
Q psy18191        203 GVYWCVARNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       203 G~Y~C~a~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      |.|+|.|.|..|... ..+.|.|..+|.
T Consensus        76 G~Y~C~a~n~~g~~~-~~~~l~V~~~P~  102 (389)
T 2jll_A           76 GRYDCEAASRIGGHQ-KSMYLDIEYAPK  102 (389)
T ss_dssp             EEEEEEEECSSCEEE-EEEEEEEEEEEE
T ss_pred             EEEEEEEEeCCCCcc-eEEEEEEEeCCE
Confidence            999999999999985 699999976553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.35  E-value=7.3e-12  Score=107.75  Aligned_cols=99  Identities=24%  Similarity=0.400  Sum_probs=74.3

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC-EEeeccCC-ccEEEecCCcEEEEEeecCCCCCCCeEE
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG-SLVSAEIG-SHRILLPAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g-~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                      ...+|.+...+....+.+|+++.|.|.+ +.|.|.+.|++++ ..+..... .+.....+++|.    |..++.+|+|.|
T Consensus       338 ~C~~P~i~~~~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~L~----I~~v~~~D~G~Y  412 (440)
T 3zyj_A          338 TCYAPVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN----FTNVTVQDTGMY  412 (440)
T ss_dssp             CCCCCCEEECCCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCCSSEEECTTCCEE----ESSCCSTTCEEE
T ss_pred             cCCCCcccccccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccCCCceEEEccCCeEE----EccCChhhCEEE
Confidence            3457888888889999999999999999 6799999999954 44433211 233445677776    566699999999


Q ss_pred             EEEEEeCCCceeEEEEEEEEccCCCCC
Q psy18191        206 WCVARNELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       206 ~C~a~N~~G~~~s~~~~L~V~~~~~~~  232 (238)
                      +|.|.|..|... .++.+.|.+.+.++
T Consensus       413 ~C~a~N~~G~~~-~~~~~~v~~~~~~~  438 (440)
T 3zyj_A          413 TCMVSNSVGNTT-ASATLNVTGTHHHH  438 (440)
T ss_dssp             EEEEECSSCEEE-EEEEEEEC------
T ss_pred             EEEEEcCCCcEE-EEEEEEEecccccc
Confidence            999999999997 59999999888765

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.34  E-value=2.7e-12  Score=109.63  Aligned_cols=127  Identities=13%  Similarity=0.160  Sum_probs=79.1

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEee-eC
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADG-YP  159 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g-~P  159 (238)
                      ..|.|.++..+|+|.|+|.+.+...  ..   .  .....+.  ......+|.+...+......+|+.+.|.|.+.| .|
T Consensus        75 ~~L~I~~v~~~D~G~Y~C~a~n~~~--~~---~--~~~~~l~--V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p  145 (438)
T 1qgc_4           75 FTLTIDPVEADDVATYYCQQSNEVP--LT---F--GAGTKLD--LKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYP  145 (438)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSTT--CC---B--CCCEEEE--ECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBS
T ss_pred             EEEEeCCCcCcCCeeEEEEEecCCC--cc---c--cCceeEE--ecCCCCCCEEEecCCChhhccCCceEEEEEEccccC
Confidence            4688889999999999987776421  00   0  0001111  111234777766443333346889999999987 67


Q ss_pred             CC-EEEEEeCCEEeeccC-CccEEE-ecCCcEE--EEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        160 EP-RIEWYKDGSLVSAEI-GSHRIL-LPAGSLF--FLSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       160 ~p-~i~W~~~g~~l~~~~-~~~~~~-~~~~~l~--~~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      .| .+.|+++|..+.... ...... ..++...  ..+.|..+..+|+|.|+|.|.|..|..
T Consensus       146 ~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  207 (438)
T 1qgc_4          146 KDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  207 (438)
T ss_dssp             SCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred             CCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCC
Confidence            77 899999999886420 000111 1223221  122355668899999999999998875

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.34  E-value=4.9e-12  Score=100.20  Aligned_cols=146  Identities=14%  Similarity=0.079  Sum_probs=82.5

Q ss_pred             CCc-cEEEeccccccccc--------------eEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceec
Q psy18191         62 PKP-ICLRFQDLLPQSKQ--------------GLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHG  126 (238)
Q Consensus        62 ~~~-~~~w~~~~~~~~~~--------------g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~  126 (238)
                      |.+ .+.||+++......              +...|.+..+..+|+|.|+|.+.+.........        .+. ...
T Consensus        48 P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~--------~v~-~~~  118 (239)
T 1i1c_A           48 DPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPAPIEK--------SIS-KPE  118 (239)
T ss_dssp             CCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSSCEEE--------EEC-CCS
T ss_pred             CCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCCCcEE--------EEe-cCC
Confidence            434 79999987533210              112455666666677777766554321100000        000 001


Q ss_pred             CCccCCEEEeCCCceEEeCCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEe--ecCCCCCCC
Q psy18191        127 DGYRVPRITEHPASAVVPRHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSL--VHGKKDTDS  202 (238)
Q Consensus       127 ~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~v--i~~v~~~d~  202 (238)
                      .+..+|.+...+.......|+.+.|.|.+.|. |. ..+.|+++|..+............+|++.+...  +......|.
T Consensus       119 ~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~  198 (239)
T 1i1c_A          119 GTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQG  198 (239)
T ss_dssp             SCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTT
T ss_pred             CCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECCCCCEEEEEEEEEChhhcCCC
Confidence            35578887665443322358899999999985 44 389999999987532111112234566655432  211123468


Q ss_pred             eEEEEEEEeCCCce
Q psy18191        203 GVYWCVARNELGFA  216 (238)
Q Consensus       203 G~Y~C~a~N~~G~~  216 (238)
                      |.|+|.|.|.....
T Consensus       199 g~YtC~v~n~~l~~  212 (239)
T 1i1c_A          199 NTFTCSVLHEGLEN  212 (239)
T ss_dssp             CCEEEEEECTTSGG
T ss_pred             CEEEEEEECCCCCC
Confidence            99999999987554

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.34  E-value=1.6e-12  Score=103.36  Aligned_cols=126  Identities=12%  Similarity=0.121  Sum_probs=75.5

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee-CC
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY-PE  160 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~  160 (238)
                      .|.|.++..+|+|.|.|.+.+..  +.   ...  ....+.  +.....+|.+...+....+.+|+.+.|.|.+.|. |.
T Consensus       110 ~L~I~~v~~~D~G~Y~C~~~~~~--~~---~~~--~~~~l~--V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~  180 (252)
T 3bkj_L          110 TLRISRVEAEDLGVYYCFQASLV--PL---TFG--AGTKLE--LKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPK  180 (252)
T ss_dssp             EEEESSCCGGGCEEEEEEECSBS--SC---EEC--CCEEEE--ECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSS
T ss_pred             EEEECCCCcccCEEEEEEEEcCC--cc---EEC--CCEEEE--EeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCC
Confidence            67888888899999997766531  10   000  001111  1112346777664443334478999999999885 44


Q ss_pred             C-EEEEEeCCEEeecc-CC-ccEEEecCCcEE--EEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        161 P-RIEWYKDGSLVSAE-IG-SHRILLPAGSLF--FLSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       161 p-~i~W~~~g~~l~~~-~~-~~~~~~~~~~l~--~~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      | .+.|+++|..+... .. .......++...  ....|..+..+|+|.|+|.|.|.....
T Consensus       181 ~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          181 DINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             CCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             CcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            4 79999999987632 00 000111233321  112255557889999999999987654

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.33  E-value=7.8e-13  Score=103.64  Aligned_cols=130  Identities=15%  Similarity=0.126  Sum_probs=75.8

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCC-
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPE-  160 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~-  160 (238)
                      .|.+.++..+|+|.|.|.+.+..  |... .....  ..+. +......+|.+...+.......|+.+.|.|.+.|.++ 
T Consensus        92 ~L~I~~v~~~D~G~Y~C~~~~~~--~~~~-~~~~~--~~l~-V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~  165 (234)
T 2j6e_L           92 SLAISGLRSEDEADYYCATWDDS--LSAV-IFGGG--TKLT-VLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPG  165 (234)
T ss_dssp             EEEEESCCSTTCSEEEEEEEETT--TTEE-EECCC--BCCC-BCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSC
T ss_pred             EEEECCCCHHHCEEEEEEEEcCC--ccee-EecCC--EEEE-EecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCC
Confidence            67888899999999997766531  1100 00000  1111 1011124566654333333346889999999988644 


Q ss_pred             -CEEEEEeCCEEeeccCCcc-EEEecCCcE--EEEEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        161 -PRIEWYKDGSLVSAEIGSH-RILLPAGSL--FFLSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       161 -p~i~W~~~g~~l~~~~~~~-~~~~~~~~l--~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                       +.++|+++|..+....... .....++..  .....|..+..+|.|.|+|.|.|..+...
T Consensus       166 ~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  226 (234)
T 2j6e_L          166 AVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE  226 (234)
T ss_dssp             CCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCC
T ss_pred             ceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceE
Confidence             3899999999886420000 001122221  11222566688899999999999987764

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.33  E-value=4.4e-12  Score=100.24  Aligned_cols=129  Identities=13%  Similarity=0.144  Sum_probs=77.0

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecce-ecCCccCCEEEe-CCCceEEeCCCcEEEEEEEeee
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGV-HGDGYRVPRITE-HPASAVVPRHEPTTLNCKADGY  158 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~-~~~v~~~P~i~~-~~~~~~~~~G~~~~L~C~~~g~  158 (238)
                      ..|.|.++.++|+|.|.|.+.+...  .+.-.....  ..+... ......+|.+.. .+....+.+|+.+.|.|.+.|.
T Consensus        77 ~~L~I~~v~~~D~G~Y~C~~~~~~~--~~~~~~~~~--~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~  152 (246)
T 4dzb_B           77 STLTVTSAHPEDSSFYICSARTSGD--FGEQFFGPG--TRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGF  152 (246)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCSSG--GGCCEECCC--EEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEE
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCC--CcceEEcCC--EEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccC
Confidence            3688889999999999977664211  000011000  111100 000224666643 4555556679999999999998


Q ss_pred             CCC--EEEEEeCCEEeeccCCccEEEe---------cCCcEEEE--EeecCCCCCC-CeEEEEEEEeCCCce
Q psy18191        159 PEP--RIEWYKDGSLVSAEIGSHRILL---------PAGSLFFL--SLVHGKKDTD-SGVYWCVARNELGFA  216 (238)
Q Consensus       159 P~p--~i~W~~~g~~l~~~~~~~~~~~---------~~~~l~~~--~vi~~v~~~d-~G~Y~C~a~N~~G~~  216 (238)
                      |+|  .+.|+++|..+...   .....         .++.+.+.  ..|.....+| .|.|+|.|.|.....
T Consensus       153 ~p~~~~v~W~k~g~~l~~~---~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~  221 (246)
T 4dzb_B          153 YPDHVELSWWVNGKEVHSG---VCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE  221 (246)
T ss_dssp             BSSCEEEEEEETTEEECTT---EEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred             cCCceEEEEEECCEECCCC---cccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCC
Confidence            765  89999999988642   11110         24444321  2244445667 999999999987654

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.33  E-value=4.8e-12  Score=97.72  Aligned_cols=147  Identities=17%  Similarity=0.229  Sum_probs=78.2

Q ss_pred             ccEEEeccccccccceEEEEEcCCCCCCCCCceEEEeC---CCcc---cCCceEEeCCCCcce-ec-ceec--CCccCCE
Q psy18191         64 PICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNN---KTWQ---KGLPLKKYHPPSLPL-FP-GVHG--DGYRVPR  133 (238)
Q Consensus        64 ~~~~w~~~~~~~~~~g~~~l~~~~~~~~~~g~y~~~~~---~~~~---~G~y~c~~~~~~~~~-~~-~~~~--~v~~~P~  133 (238)
                      ..+.||+++.++.... .    ........|.|.+...   ...+   .|.|.|.+.+..... .. .+..  .+..+|.
T Consensus        37 ~~v~W~k~~~~~~~~~-~----~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~  111 (207)
T 1l6x_A           37 VKFNWYVDGVEVHNAK-T----KPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQ  111 (207)
T ss_dssp             CEEEEEETTEEECCCE-E----CCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCE
T ss_pred             eEEEEEECCccccCcc-c----CCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcceEEEeccCCCCCcCCE
Confidence            4899999987543211 0    0000112344443211   1112   566666555443321 11 1111  3456788


Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEe--ecCCCCCCCeEEEEEE
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSL--VHGKKDTDSGVYWCVA  209 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~v--i~~v~~~d~G~Y~C~a  209 (238)
                      +...+.......|+.+.|.|.+.|. |. +.+.|+++|..+............+|.+.+...  +......|.|.|+|.|
T Consensus       112 v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a  191 (207)
T 1l6x_A          112 VYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSV  191 (207)
T ss_dssp             EEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEE
T ss_pred             EEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEE
Confidence            7654332222346669999999986 44 389999999987632111112234566554432  2222335799999999


Q ss_pred             EeCCCc
Q psy18191        210 RNELGF  215 (238)
Q Consensus       210 ~N~~G~  215 (238)
                      .|....
T Consensus       192 ~n~~l~  197 (207)
T 1l6x_A          192 MHEALH  197 (207)
T ss_dssp             ECTTSG
T ss_pred             EcCCcC
Confidence            998754

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.33  E-value=1.7e-11  Score=92.72  Aligned_cols=97  Identities=19%  Similarity=0.362  Sum_probs=71.2

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeC-CCEEEEEe-CCEEeeccCCccEEEec-CCcEEEEEeecCCCCCCCeEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYP-EPRIEWYK-DGSLVSAEIGSHRILLP-AGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P-~p~i~W~~-~g~~l~~~~~~~~~~~~-~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      ++.+...|.+..+.+|+++.|.|.+.+.| .+.+.|++ +|..+............ .+...+  .|..+..+|+|.|+|
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L--~i~~~~~~d~G~Y~C   79 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTL--TIYNANIDDAGIYKC   79 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEE--EECSCCGGGCEEEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEE--EEccCCcccCEEEEE
Confidence            45677778889999999999999999987 89999999 88887743222222211 222222  267779999999999


Q ss_pred             EEEeCCCceeEEEEEEEEccCC
Q psy18191        208 VARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      .|.|..|...+..+.|.|..++
T Consensus        80 ~~~~~~~~~~~~~~~l~v~~~p  101 (191)
T 1epf_A           80 VVTAEDGTQSEATVNVKIFQKL  101 (191)
T ss_dssp             EEEETTTEEEEEEEEEEEECCS
T ss_pred             EEEcCCCcceEEEEEEEeecCc
Confidence            9999995544568888887654

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.32  E-value=1.1e-12  Score=100.27  Aligned_cols=93  Identities=19%  Similarity=0.283  Sum_probs=68.9

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEe---cCCcEEEEEeecCCCCCCCeEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL---PAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~---~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                      ..+|.|...|.. .+.+|+++.|.|.+.+ |.+.+.|+|+|..+...   .....   ..+.|.    |..++.+|+|.|
T Consensus         3 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~---~~~~~~~~~~~~L~----i~~v~~~D~G~Y   73 (196)
T 3p2t_A            3 LPKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWD---RQNPLEPKNKARFS----IPSMTEDYAGRY   73 (196)
T ss_dssp             BCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSE---EECCCSSSSEEEEE----ESSCCGGGCEEE
T ss_pred             CCCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccc---ccccccCCceEEEE----eccCCcccCceE
Confidence            357888887777 8899999999999988 77899999999876531   11111   112232    677899999999


Q ss_pred             EEEEEeCCCc-eeEEEEEEEEccCCC
Q psy18191        206 WCVARNELGF-ARSKNATLDVAGKIS  230 (238)
Q Consensus       206 ~C~a~N~~G~-~~s~~~~L~V~~~~~  230 (238)
                      +|.|.|..|. ..+..+.|.|...+.
T Consensus        74 ~C~a~n~~g~~~~s~~~~l~V~~~~~   99 (196)
T 3p2t_A           74 RCYYRSPVGWSQPSDPLELVMTGAYS   99 (196)
T ss_dssp             EEEEEETTEEBCCCCCEEEEEECSSC
T ss_pred             EEEEeCCCcccCCCccEEEEecCCCC
Confidence            9999999983 334578888875543

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.31  E-value=9.2e-12  Score=90.85  Aligned_cols=91  Identities=13%  Similarity=0.215  Sum_probs=65.1

Q ss_pred             eCCCceEEeCCCcEEEEEEEeeeCCCEEEEEe---------CCEEeeccCCccEEEe--cCCcEEEEEeecCCCCCCCeE
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGYPEPRIEWYK---------DGSLVSAEIGSHRILL--PAGSLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~---------~g~~l~~~~~~~~~~~--~~~~l~~~~vi~~v~~~d~G~  204 (238)
                      ..|..+.+.+|+++.|.|.+.+.|.+.+.|++         ++..+.   ..+....  ..+..  .+.|..++.+|+|.
T Consensus        43 ~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~---~~r~~~~~~~~~~~--~L~I~~v~~~DsG~  117 (145)
T 1z9m_A           43 PWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALR---DNRIQLVTSTPHEL--SISISNVALADEGE  117 (145)
T ss_dssp             CBCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSC---CTTEEEEEECSSEE--EEEECSCCGGGCEE
T ss_pred             cCCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecc---cCCEEEecCCCCeE--EEEECCCChhhCEE
Confidence            34677899999999999999999999999994         332222   1222111  11122  22378889999999


Q ss_pred             EEEEEEeCCCceeEEEEEEEEccCCCCCC
Q psy18191        205 YWCVARNELGFARSKNATLDVAGKISTAT  233 (238)
Q Consensus       205 Y~C~a~N~~G~~~s~~~~L~V~~~~~~~~  233 (238)
                      |+|.|.|. |... ..+.|.|..+|.+|.
T Consensus       118 Y~C~~~n~-~~~~-~~~~L~V~~~P~~P~  144 (145)
T 1z9m_A          118 YTCSIFTM-PVRT-AKSLVTVLGIPQKPI  144 (145)
T ss_dssp             EEEEECSS-SCEE-EEEEEEEECCCC---
T ss_pred             EEEEEEcC-CCce-EEEEEEEEeCCCCCc
Confidence            99999999 8875 599999998877653

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.31  E-value=4e-12  Score=109.14  Aligned_cols=142  Identities=18%  Similarity=0.160  Sum_probs=84.9

Q ss_pred             CccEEEeccccccccc--------------eEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceec--
Q psy18191         63 KPICLRFQDLLPQSKQ--------------GLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHG--  126 (238)
Q Consensus        63 ~~~~~w~~~~~~~~~~--------------g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~--  126 (238)
                      .+.+.|++++..+...              ....|.+..+..+|+|.|+|.+.+...  ....        . ..+..  
T Consensus       273 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~--~~~~--------~-~~v~~~~  341 (444)
T 1igt_B          273 DVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDL--PAPI--------E-RTISKPK  341 (444)
T ss_dssp             CCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTC--SSCE--------E-EEEECCC
T ss_pred             CeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCC--CCce--------E-EEEeccC
Confidence            3589999988644221              123577777888888888887766322  1100        0 11111  


Q ss_pred             CCccCCEEEeCCCceEEeCCCcEEEEEEEeee-CCC-EEEEEeCCEEeeccCCccEEEecCCcEEEEEe--ecCCCCCCC
Q psy18191        127 DGYRVPRITEHPASAVVPRHEPTTLNCKADGY-PEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSL--VHGKKDTDS  202 (238)
Q Consensus       127 ~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~v--i~~v~~~d~  202 (238)
                      .+..+|.+...+.......++.+.|.|.+.|. |.| .++|+++|..+............+|.+.+...  +.....+|.
T Consensus       342 ~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~  421 (444)
T 1igt_B          342 GSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVER  421 (444)
T ss_dssp             CCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTC
T ss_pred             CCCCCCEEEEeCCChHHccCCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChHHhcCC
Confidence            35578887654432212234459999999985 555 89999999987432111112234565544322  333345569


Q ss_pred             eEEEEEEEeCCCc
Q psy18191        203 GVYWCVARNELGF  215 (238)
Q Consensus       203 G~Y~C~a~N~~G~  215 (238)
                      |.|+|.|.|..-.
T Consensus       422 g~YtC~a~n~~l~  434 (444)
T 1igt_B          422 NSYSCSVVHEGLH  434 (444)
T ss_dssp             CCEEEEEECTTSG
T ss_pred             CeEEEEEECCCcC
Confidence            9999999997643

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.31  E-value=1.4e-11  Score=97.95  Aligned_cols=74  Identities=15%  Similarity=0.347  Sum_probs=48.1

Q ss_pred             CceEEeCCCcEEEEEEEeeeC--CCEEEEEeC--CEEeec----c-----------CCccEEEe-cCCcEEEEEeecCCC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYP--EPRIEWYKD--GSLVSA----E-----------IGSHRILL-PAGSLFFLSLVHGKK  198 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~--g~~l~~----~-----------~~~~~~~~-~~~~l~~~~vi~~v~  198 (238)
                      ....+.+|+++.|.|.+.+.|  .+.+.|+++  +..+..    .           ...+.... ........+.|..++
T Consensus       142 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~  221 (256)
T 3ux9_B          142 GGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLR  221 (256)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCC
Confidence            446689999999999999877  789999986  322210    0           00111111 111111122378889


Q ss_pred             CCCCeEEEEEEEeC
Q psy18191        199 DTDSGVYWCVARNE  212 (238)
Q Consensus       199 ~~d~G~Y~C~a~N~  212 (238)
                      .+|+|.|.|.|.|.
T Consensus       222 ~~DsG~Y~C~~~~~  235 (256)
T 3ux9_B          222 AEDTAVYYCARYID  235 (256)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             hhhCEEEEEEEEcC
Confidence            99999999999996

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.31  E-value=2.8e-11  Score=107.54  Aligned_cols=95  Identities=19%  Similarity=0.264  Sum_probs=77.7

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      ....|.+...+.+..+.+|+.+.|.|.+.|.|.|.++|++++..|..+ ....+...++. .. +.|..+..+|+|.|+|
T Consensus       479 ~~~~P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~s-~~~~i~~~~~~-~~-L~I~~~~~~D~G~Yt~  555 (573)
T 3uto_A          479 SEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS-VKYMKRYNGND-YG-LTINRVKGDDKGEYTV  555 (573)
T ss_dssp             GGGSCEEEECCCCEEECTTSCEEEEEEEECSSCCEEEEEETTEECCSS-SSEEEEEETTE-EE-EEECSCCGGGCEEEEE
T ss_pred             cccCCccccCCCCcEEeCCCcEEEEEEEEccCCCeEEEEECCEEcccC-CcEEEEEcCCE-EE-EEEcCCCcccCcEEEE
Confidence            446788888888999999999999999999999999999999999753 22333333443 32 2478889999999999


Q ss_pred             EEEeCCCceeEEEEEEEEc
Q psy18191        208 VARNELGFARSKNATLDVA  226 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~  226 (238)
                      .|.|..|+.+ ..+.|.|.
T Consensus       556 ~A~N~~G~~~-~~v~l~Vt  573 (573)
T 3uto_A          556 RAKNSYGTKE-EIVFLNVT  573 (573)
T ss_dssp             EEEETTEEEE-EEEEEEEC
T ss_pred             EEEeCCCcEE-EEEEEEEC
Confidence            9999999997 59999873

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.31  E-value=2e-11  Score=96.60  Aligned_cols=125  Identities=15%  Similarity=0.175  Sum_probs=69.6

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceeccee------------cCCccCCEEEeCCCceEEeCCCcE
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVH------------GDGYRVPRITEHPASAVVPRHEPT  149 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~------------~~v~~~P~i~~~~~~~~~~~G~~~  149 (238)
                      .|.|.++..+|+|.|.|.+.+...  .   .......+.+....            .....++.+...+....+.+|+++
T Consensus        75 ~L~I~~v~~~D~G~Y~C~~~n~~~--~---~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v  149 (250)
T 3esu_F           75 SLTISNLEQEDIGTYFCQQGNTLP--W---TFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASV  149 (250)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSS--C---EECCCEEEEEC------------------------CEECCCEEECTTCCE
T ss_pred             EEEEccCChhhCEEEEEEEeeCCC--c---eECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceE
Confidence            688889999999999987765321  0   00000000000000            000012333344566789999999


Q ss_pred             EEEEEEeeeC--CCEEEEEeC--CEEeecc---------------CCccEEEecCC-cEEEEEeecCCCCCCCeEEEEEE
Q psy18191        150 TLNCKADGYP--EPRIEWYKD--GSLVSAE---------------IGSHRILLPAG-SLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       150 ~L~C~~~g~P--~p~i~W~~~--g~~l~~~---------------~~~~~~~~~~~-~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .|.|.+.+.|  .|.+.|+++  +..+..-               ...+.....++ .....+.|..++.+|+|.|.|.|
T Consensus       150 ~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~  229 (250)
T 3esu_F          150 KISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCAR  229 (250)
T ss_dssp             EEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEE
Confidence            9999998877  789999997  4332110               00111111110 11112337888999999999999


Q ss_pred             Ee
Q psy18191        210 RN  211 (238)
Q Consensus       210 ~N  211 (238)
                      .|
T Consensus       230 ~~  231 (250)
T 3esu_F          230 SG  231 (250)
T ss_dssp             EC
T ss_pred             ec
Confidence            98

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.31  E-value=4.5e-12  Score=99.37  Aligned_cols=140  Identities=14%  Similarity=0.186  Sum_probs=75.2

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee-C
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY-P  159 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P  159 (238)
                      ..|.|.++..+|+|.|.|...+...     -.+.  ....+. +......+|.+...+....+..|+.+.|.|.+.|. |
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~-----~~~~--~~~~L~-V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P  150 (227)
T 1mju_H           79 AYMQLSSLTSDDSAVYYCANKLGWF-----PYWG--QGTLVT-VSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFP  150 (227)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTE-----EEEC--CCEEEE-ECSSCCBCCEEEEECCCC------CEEEEEEEEEEBS
T ss_pred             EEEEECCCCcccCEEEEEEECCCCc-----eEEc--CcEEEE-EcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeC
Confidence            3577778888888888866554210     0000  011111 11111245666543323456789999999999986 7


Q ss_pred             CC-EEEEEeCCEEeeccCCccEEEecCCcEE--EEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCCCCC
Q psy18191        160 EP-RIEWYKDGSLVSAEIGSHRILLPAGSLF--FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       160 ~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~--~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~~  232 (238)
                      .| .+.|++++..+.........  .++...  ....|..+..+| |.|+|.|.|..+... ....+.+.++|..+
T Consensus       151 ~p~~v~W~~~g~~~~~~~~~~~~--~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~-~~~~~~~~~~p~~~  222 (227)
T 1mju_H          151 EPVTLTWNSGSLSSGVHTFPAVL--QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTK-VDKKIEPRGPTIKP  222 (227)
T ss_dssp             SCCEEEEGGGTBCTTEEECCCEE--ETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEE-EEEECCCCCC----
T ss_pred             CCeEEEEecCCCcCCcEECCcee--cCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcc-eEEEeCCCCCCCCC
Confidence            77 99999998764321111111  123222  122356667677 999999999877664 46677776666543

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.30  E-value=1.1e-11  Score=93.96  Aligned_cols=87  Identities=24%  Similarity=0.306  Sum_probs=67.1

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      +..+|.|...|.. .+.+|+++.|.|.+.+ |.+.+.|+|+|...         ...++.|.    |..++.+|+|.|+|
T Consensus         5 ~~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~---------~~~~~~L~----i~~v~~~D~G~Y~C   69 (184)
T 2gi7_A            5 PLPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR---------YQDQAVLF----IPAMKRSLAGRYRC   69 (184)
T ss_dssp             CBCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC---------EESSSEEE----ESSCCGGGCEEEEE
T ss_pred             CCCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc---------cCcccEEE----ECcCChhhCceEEE
Confidence            4568888887765 7899999999999988 88999999998641         12345554    66779999999999


Q ss_pred             EEEeCCCc-eeEEEEEEEEccCC
Q psy18191        208 VARNELGF-ARSKNATLDVAGKI  229 (238)
Q Consensus       208 ~a~N~~G~-~~s~~~~L~V~~~~  229 (238)
                      .|.|..|. ..+..+.|.|.+..
T Consensus        70 ~a~n~~g~~~~s~~~~l~V~~~~   92 (184)
T 2gi7_A           70 SYQNGSLWSLPSDQLELVATGVF   92 (184)
T ss_dssp             EEEETTEEBCCCCCEEEEEESSS
T ss_pred             EEEcCCCccCCCCCEEEEecCcC
Confidence            99998874 22346788886543

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.30  E-value=3.5e-11  Score=91.09  Aligned_cols=62  Identities=15%  Similarity=0.273  Sum_probs=45.9

Q ss_pred             CCCcEEEEEEE-eeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEE
Q psy18191        145 RHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNAT  222 (238)
Q Consensus       145 ~G~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~  222 (238)
                      .++.+.|.|.+ .| |.|.+.|++++..+..        ..+..+.    +.  ..+|+|.|+|.|.|.+|...+ .+.
T Consensus       114 ~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~--------~~~~~l~----~~--~~~d~g~Y~C~a~N~~~~~~~-~~~  176 (180)
T 2dru_A          114 ECSNATLTCEVLEG-TDVELKLYQGKEHLRS--------LRQKTMS----YQ--WTNLRAPFKCKAVNRVSQESE-MEV  176 (180)
T ss_dssp             EGGGTEEEEECSSC-TTCEEEEEETTEEEEE--------ESSSEEE----EE--CSCCSSCEEEEEEETTEEEEE-EEC
T ss_pred             cCCCEEEEEEeCCC-CCCEEEEEECCeECcC--------CCCCEEE----EE--EhhcCccEEEEEecCcCcccc-cee
Confidence            34679999999 66 9999999999988751        1122332    21  378999999999999998753 443

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.30  E-value=4.2e-11  Score=94.63  Aligned_cols=124  Identities=10%  Similarity=0.111  Sum_probs=71.0

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCC-------------EEEeCCCceEEeCCC
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVP-------------RITEHPASAVVPRHE  147 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P-------------~i~~~~~~~~~~~G~  147 (238)
                      ..|.|.++.++|+|.|.|.+.+...  ..   ..  ....+.     +..+|             .+...+....+.+|+
T Consensus        71 ~~L~I~~v~~~D~G~Y~C~~~n~~~--~~---~~--~~~~L~-----V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~  138 (242)
T 2znx_A           71 FTLSINSVETEDFGMYFCQQSNSXP--YT---FG--GGTKLE-----ITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQ  138 (242)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSS--CE---EC--CCEEEE-----EC---------------CCEEEEECCSEECTTS
T ss_pred             EEEEECCCChHHCEEEEEeEecCCc--eE---EC--CCEEEE-----EcCCCCCCcccccccccceeeecCCcceecCCC
Confidence            3578888888999999977665321  00   00  000111     11222             222333345689999


Q ss_pred             cEEEEEEEeeeC--CCEEEEEeC--CEEee---c---cC-------CccEEEec--CCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        148 PTTLNCKADGYP--EPRIEWYKD--GSLVS---A---EI-------GSHRILLP--AGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       148 ~~~L~C~~~g~P--~p~i~W~~~--g~~l~---~---~~-------~~~~~~~~--~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      ++.|.|.+.|.|  .|.+.|+++  +..+.   .   ..       ...++...  .......+.|..++.+|+|.|.|.
T Consensus       139 ~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  218 (242)
T 2znx_A          139 TLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCA  218 (242)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             eEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEe
Confidence            999999999876  588999984  32221   0   00       01122111  111111223778899999999999


Q ss_pred             EEeC--CCce
Q psy18191        209 ARNE--LGFA  216 (238)
Q Consensus       209 a~N~--~G~~  216 (238)
                      |.|.  +|..
T Consensus       219 a~~~~~fG~g  228 (242)
T 2znx_A          219 NXDGDYXGQG  228 (242)
T ss_dssp             ETTSSCBCCC
T ss_pred             ccCCcccCCC
Confidence            9984  5665

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.30  E-value=6.2e-12  Score=104.49  Aligned_cols=125  Identities=14%  Similarity=0.191  Sum_probs=74.9

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee-C
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY-P  159 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P  159 (238)
                      ..|.|.++..+|+|.|.|.+.+..  +    .....  ..+. +......+|.+...+....+.+|+.+.|.|.+.|. |
T Consensus        79 ~~L~I~~v~~~D~G~Y~C~~~n~~--~----~~~~~--~~l~-V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P  149 (344)
T 1za6_B           79 AYVELSSLRSEDTAVYFCTRSLNM--A----YWGQG--TLVT-VSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  149 (344)
T ss_dssp             EEEEECSCCGGGCEEEEEEETTTT--C----EECCC--EEEE-ECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBS
T ss_pred             EEEEECCCCcccCEEEEEEEecCc--c----eecCc--EEEE-EecCCCCCCeEEEccccccccCCCcEEEEEEEeeEEC
Confidence            357788888888888887766521  1    11000  1111 11112246666544333445789999999999987 6


Q ss_pred             C-CEEEEEeCCEEeeccCCccEEEecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        160 E-PRIEWYKDGSLVSAEIGSHRILLPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       160 ~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      . |.+.|+++|..+....... ....++....  .+.|..+..+| |.|+|.|.|..|..
T Consensus       150 ~~~~v~W~k~g~~~~~~~~~~-~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~  207 (344)
T 1za6_B          150 EPVTVSWNSGALTSGVHTFPA-VLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  207 (344)
T ss_dssp             SCCCEEETTTTBCTTEEECCC-EECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTE
T ss_pred             CCeEEEEecCCccCceeECCC-eECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCc
Confidence            4 7999999987642110111 1122332221  22356666677 99999999999875

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.29  E-value=7.7e-11  Score=92.58  Aligned_cols=122  Identities=13%  Similarity=0.202  Sum_probs=71.1

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCc--cCCEEEeCCCceEEeCCCcEEEEEEEeeeC
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGY--RVPRITEHPASAVVPRHEPTTLNCKADGYP  159 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~--~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P  159 (238)
                      .|.|.++.++|+|.|+|.+.+...  ..   .  .....+. +.....  .++.+...+....+.+|+++.|.|.+.|.|
T Consensus        76 ~L~I~~v~~~D~G~Y~C~~~n~~~--~~---~--~~~~~l~-V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p  147 (240)
T 1moe_A           76 TLIIDPVEADDVATYYCQQTNEDP--YT---F--GGGTKLE-IKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFN  147 (240)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSS--CC---B--CCCEEEE-ECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSC
T ss_pred             EEEEcCCChhhCEEEEEEEccCCc--ee---e--cCCEEEE-EecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCcc
Confidence            688889999999999987766321  10   0  0011111 111000  122344456778899999999999999887


Q ss_pred             C--CEEEEEeC--CEEeec-------c--------CCccEEEe-cCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        160 E--PRIEWYKD--GSLVSA-------E--------IGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       160 ~--p~i~W~~~--g~~l~~-------~--------~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      .  +.+.|+++  +..+..       .        ...+.... ........+.|..++.+|+|.|.|.|.+
T Consensus       148 ~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          148 IKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             GGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             CCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            4  68999995  222110       0        01111111 1111111233788899999999999984

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.28  E-value=9.2e-12  Score=102.53  Aligned_cols=140  Identities=11%  Similarity=0.087  Sum_probs=81.4

Q ss_pred             cEEEeccc-ccccc---------ce----EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceec--CC
Q psy18191         65 ICLRFQDL-LPQSK---------QG----LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHG--DG  128 (238)
Q Consensus        65 ~~~w~~~~-~~~~~---------~g----~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~--~v  128 (238)
                      .+.||+++ .....         .+    ...|.+..+..+|+|.|+|.+.+... +.         ..... +..  .+
T Consensus       148 ~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~-~~---------~~~~~-v~~~~~~  216 (323)
T 2wqr_A          148 QLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHL-PR---------ALMRS-TTKTSGP  216 (323)
T ss_dssp             EEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTS-SS---------CEEEE-ECCCCSC
T ss_pred             EEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCC-CC---------CeeeE-EEccCCC
Confidence            89999964 33221         11    12466777777788888876655321 10         00111 111  13


Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeee-CCC-EEEEEeCCEEeeccCC--ccEEEecCCcEEE--EEeecCCCCCCC
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGY-PEP-RIEWYKDGSLVSAEIG--SHRILLPAGSLFF--LSLVHGKKDTDS  202 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~--~~~~~~~~~~l~~--~~vi~~v~~~d~  202 (238)
                      ..+|.+...+.......|+.+.|.|.+.|. |.+ .+.|+++|..+.....  .......++...+  .+.|..+..+|.
T Consensus       217 ~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~  296 (323)
T 2wqr_A          217 RAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQK  296 (323)
T ss_dssp             CBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHC
T ss_pred             CCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCC
Confidence            367776553222222339999999999985 443 7999999998864200  0011122333221  222455578899


Q ss_pred             eEEEEEEEeCCCc
Q psy18191        203 GVYWCVARNELGF  215 (238)
Q Consensus       203 G~Y~C~a~N~~G~  215 (238)
                      |.|+|.|.|..+.
T Consensus       297 g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          297 DEFICRAVHEAAS  309 (323)
T ss_dssp             CCEEEEEECTTST
T ss_pred             CEEEEEEEeCCCC
Confidence            9999999999877

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.28  E-value=2.3e-11  Score=94.78  Aligned_cols=129  Identities=15%  Similarity=0.214  Sum_probs=76.7

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee-C
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY-P  159 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P  159 (238)
                      ..|.|.++..+|+|.|.|...+..  + +.-.+.  ....+. +......+|.+...+ ...+..|+.+.|.|.+.|. |
T Consensus        79 ~~L~I~~v~~~DsG~Y~C~~~~~~--~-~~~~~~--~~~~L~-V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P  151 (220)
T 2fbj_H           79 LYLQMSKVRSEDTALYYCARLHYY--G-YNAYWG--QGTLVT-VSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFP  151 (220)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETT--T-EEEEEC--CCEEEE-ECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBS
T ss_pred             EEEEECCCChhhCEEEEEEEeccc--c-ccceec--CCEEEE-ecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEEC
Confidence            357777777788888876554321  1 000000  011111 111122467776544 3345789999999999887 7


Q ss_pred             C--CEEEEEeCCEEeeccCCccEEEecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        160 E--PRIEWYKDGSLVSAEIGSHRILLPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       160 ~--p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      .  +.+.|++++..+...... .....++...+  ...|..+...|.|.|+|.|.|..|..+
T Consensus       152 ~~~~~v~W~~~~~~~~~~~~~-~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          152 SGTMNVTWGKSGKDITTVNFP-PALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             CCCEEEEESCCCSSCEEEECC-CEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             CCcEEEEEecCCEecceEecC-ceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            6  799999998765321011 11223444332  223556677889999999999999985

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.28  E-value=6.1e-12  Score=97.79  Aligned_cols=131  Identities=15%  Similarity=0.172  Sum_probs=75.6

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee-CC
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY-PE  160 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~  160 (238)
                      .|.|.++...|+|.|.|...+..  |. .-.+.  ....+. +......+|.+...+....+.+|+.+.|.|.+.|. |.
T Consensus        82 ~L~I~~v~~~D~G~Y~C~~~~~~--~~-~~~~~--~~~~l~-V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~  155 (220)
T 1pz5_B           82 YLQMNNLRAEDTGIYYCTRGGAV--GA-MDYWG--QGTSVT-VSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPE  155 (220)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTT--SS-EEEEC--CCEEEE-ECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSS
T ss_pred             EEEEccCCHHHCEEEEEEEecCC--cc-cceEC--CCEEEE-EccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCC
Confidence            67788888888888887665531  10 00000  011111 11112356776654434446789999999999988 88


Q ss_pred             C-EEEEEeCCEEeeccCCccEEEecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCceeEEEEE
Q psy18191        161 P-RIEWYKDGSLVSAEIGSHRILLPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGFARSKNAT  222 (238)
Q Consensus       161 p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~  222 (238)
                      | .+.|++++..+......... . .+....  ...|..+..+| |.|+|.|.|..|... +++.
T Consensus       156 p~~v~W~~~~~~~~~~~~~~~~-~-~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~-~~~~  216 (220)
T 1pz5_B          156 PVTVKWNYGALSSGVRTVSSVL-Q-SGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVD-LIKE  216 (220)
T ss_dssp             CCEEEEGGGTCCTTEEECCCEE-E-TTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEE-EEEE
T ss_pred             CeEEEEecCCcccceEEcCCcc-c-CCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEe-eeec
Confidence            9 99999988631100011111 1 122211  12245556555 999999999999875 3443

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.28  E-value=1.5e-11  Score=93.15  Aligned_cols=89  Identities=24%  Similarity=0.367  Sum_probs=68.0

Q ss_pred             cCCEEEeCCCceEEeC-CCcEEEEEEEeeeCC--CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEE
Q psy18191        130 RVPRITEHPASAVVPR-HEPTTLNCKADGYPE--PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~-G~~~~L~C~~~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      .||.|... ....+.+ |+++.|.|.+.+.|.  +.+.|++++..+...   ... ..++.|.    |..+..+|+|.|+
T Consensus         2 ~~P~i~~~-~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~---~~~-~~~~~L~----i~~~~~~d~G~Y~   72 (190)
T 2wv3_A            2 NEPRIVTS-EEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT---RKN-ASNMEYR----INKPRAEDSGEYH   72 (190)
T ss_dssp             -CCEEEEC-CCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTC---CBC-CSEEEEE----ESSCCGGGCEEEE
T ss_pred             CCCccccc-ceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECccc---ceE-eccEEEE----EecCCcccCEEEE
Confidence            47888774 4566666 999999999999987  889999999988642   111 1223333    6777999999999


Q ss_pred             EEEEeCCCceeEEEEEEEEccCC
Q psy18191        207 CVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       207 C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      |.|.|. |... ..+.|.|..+|
T Consensus        73 C~~~n~-~~~~-~~~~l~V~~~p   93 (190)
T 2wv3_A           73 CVYHFV-SAPK-ANATIEVKAAP   93 (190)
T ss_dssp             EEEEET-TEEE-EEEEEEEECCC
T ss_pred             EEEEeC-Cccc-ccEEEEEecCC
Confidence            999999 8775 58999987765

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.28  E-value=4e-12  Score=97.19  Aligned_cols=95  Identities=18%  Similarity=0.244  Sum_probs=67.4

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      ..+|.|...|.. .+.+|+++.|.|.+.+.|. .+.|+|+|..+............++.|.    |..++.+|+|.|+|.
T Consensus         3 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~----i~~v~~~D~G~Y~C~   76 (196)
T 2d3v_A            3 LSKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFS----IPSMTEHHAGRYRCY   76 (196)
T ss_dssp             CCBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEE----ESSCCGGGCEEEEEE
T ss_pred             CCCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEE----eccCChhHCeEEEEE
Confidence            357888887764 7899999999999988765 9999999987642100000001112232    677899999999999


Q ss_pred             EEeCCCce-eEEEEEEEEccCC
Q psy18191        209 ARNELGFA-RSKNATLDVAGKI  229 (238)
Q Consensus       209 a~N~~G~~-~s~~~~L~V~~~~  229 (238)
                      |.|..|.. .+..+.|.|...+
T Consensus        77 a~n~~g~~~~s~~~~l~V~~~~   98 (196)
T 2d3v_A           77 YYSPAGWSEPSDPLELVVTGFY   98 (196)
T ss_dssp             EEETTEECBCCCCEEEEEECSS
T ss_pred             EeCCCCcCCcCccEEEEecCCC
Confidence            99998753 2346788887743

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.27  E-value=5.1e-12  Score=98.64  Aligned_cols=94  Identities=18%  Similarity=0.192  Sum_probs=67.9

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEE--ecCC--cEEEEEeecCCCCCCCe
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRIL--LPAG--SLFFLSLVHGKKDTDSG  203 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~--~~~~--~l~~~~vi~~v~~~d~G  203 (238)
                      +..+|.|...|. ..+.+|++++|.|.+.+ |.+.+.|+|+|..+...  .....  ...+  .|.    |..++.+|+|
T Consensus         6 ~~~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~--~~~~~~~~~~~~~~L~----I~~v~~~D~G   77 (218)
T 1uct_A            6 DFPMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYRE--IGRRLKFWNETDPEFV----IDHMDANKAG   77 (218)
T ss_dssp             GSCCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEE--CSEECC----CCCEEE----ECSCCGGGCE
T ss_pred             CCCCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccc--ccccCCCCcceeeEEE----EcccccccCE
Confidence            456888988776 57899999999999987 78899999998766432  11111  1123  444    6677999999


Q ss_pred             EEEEEEEeCCCce-eEEEEEEEEccCC
Q psy18191        204 VYWCVARNELGFA-RSKNATLDVAGKI  229 (238)
Q Consensus       204 ~Y~C~a~N~~G~~-~s~~~~L~V~~~~  229 (238)
                      .|+|.|.|..|.. .+..+.|.|.+.+
T Consensus        78 ~Y~C~a~n~~~~~~~s~~~~l~V~~~~  104 (218)
T 1uct_A           78 RYQCQYRIGHYRFRYSDTLELVVTGLY  104 (218)
T ss_dssp             EEEEEEEETTTEEEECCCEEEEEECSS
T ss_pred             EEEEEEEcCCCceeecCCEEEEEcCcc
Confidence            9999999987643 2346788887644

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.27  E-value=1.6e-11  Score=96.37  Aligned_cols=95  Identities=29%  Similarity=0.459  Sum_probs=72.5

Q ss_pred             cCCEEEeC----CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCc--cEEEecCCcEEEEEeecCCCCCCCe
Q psy18191        130 RVPRITEH----PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGS--HRILLPAGSLFFLSLVHGKKDTDSG  203 (238)
Q Consensus       130 ~~P~i~~~----~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~--~~~~~~~~~l~~~~vi~~v~~~d~G  203 (238)
                      .+|.+...    +..+.+.+|+++.|.|.+.|.|.|.+.|++++..+......  .......+.|.    |..++.+|+|
T Consensus        10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~----i~~v~~~d~G   85 (241)
T 3grw_A           10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLV----MESVVPSDRG   85 (241)
T ss_dssp             -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEE----ECSCCGGGCE
T ss_pred             CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEE----EEeCCcccCE
Confidence            46766543    34678899999999999999999999999999988754221  12333344554    5666999999


Q ss_pred             EEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        204 VYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       204 ~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      .|+|.|.|..|... ..+.|.|...+
T Consensus        86 ~Y~C~~~~~~~~~~-~~~~l~V~~~~  110 (241)
T 3grw_A           86 NYTCVVENKFGSIR-QTYTLDVLERS  110 (241)
T ss_dssp             EEEEEEEETTEEEE-EEEEEEEECCC
T ss_pred             EEEEEEeecCCceE-EEEEEEEeccC
Confidence            99999999999886 58899887643

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.27  E-value=1.4e-11  Score=92.48  Aligned_cols=60  Identities=12%  Similarity=0.155  Sum_probs=45.8

Q ss_pred             EEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEE
Q psy18191        150 TLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLD  224 (238)
Q Consensus       150 ~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~  224 (238)
                      .|.|.+.|.|.|.++|+++|..+...        ....+  ...    ...|+|.|+|.|.|.+|...+ .+.|.
T Consensus       109 ~L~C~~~~~p~p~i~W~~~~~~l~~~--------~~~~l--~~~----~~~~~g~Y~C~a~N~~~~~~~-~~~l~  168 (171)
T 1ccz_A          109 TLTCEVLEGTDVELKLYQGKEHLRSL--------RQKTM--SYQ----WTNLRAPFKCKAVNRVSQESE-MEVVN  168 (171)
T ss_dssp             EEEEECSSCSSCEEEEEETTEEEEEE--------SSSEE--EEE----CSCCSSCEEEEEEETTEEEEE-EECCC
T ss_pred             EEEEEeCCCCCcEEEEEECCEECcCC--------cceEE--EEe----ccCCCceEEEEEEcccCcccc-eeEEe
Confidence            79999999999999999999887632        11122  222    578899999999999999853 66554

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=1.5e-11  Score=84.05  Aligned_cols=81  Identities=25%  Similarity=0.418  Sum_probs=59.1

Q ss_pred             CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeE
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARS  218 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s  218 (238)
                      .++.+.+|+++.|.|.+. .|.|.+.|+|+|..+...  .......++.... +.|..+..+|+|.|+|.|.|    .. 
T Consensus        19 ~~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~--~~~~~~~~~~~~~-L~I~~~~~~D~G~Y~C~a~~----~~-   89 (102)
T 2eo1_A           19 REVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSS--SKVRVEAVGCTRR-LVVQQAGQAEAGEYSCEAGG----QQ-   89 (102)
T ss_dssp             EEEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCC--SSEEEEEETTEEE-EEETTCCTTTCSCEEEEETT----EE-
T ss_pred             ccEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCC--CCEEEEEcCCEEE-EEECCCCcccCEEEEEEcCC----Cc-
Confidence            346889999999999998 889999999999988753  2222222332221 23788899999999999954    33 


Q ss_pred             EEEEEEEccC
Q psy18191        219 KNATLDVAGK  228 (238)
Q Consensus       219 ~~~~L~V~~~  228 (238)
                      ..+.|.|..+
T Consensus        90 ~~~~l~V~~p   99 (102)
T 2eo1_A           90 LSFRLQVAGQ   99 (102)
T ss_dssp             CCEEEEEESC
T ss_pred             EEEEEEEeCC
Confidence            3778888765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.27  E-value=8.3e-12  Score=108.30  Aligned_cols=92  Identities=27%  Similarity=0.455  Sum_probs=70.0

Q ss_pred             CCEEEe-CCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        131 VPRITE-HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       131 ~P~i~~-~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      +|.+.. .+....+.+|+++.|.|.+.|.|.|.++|++++..+..... .+.....++.+.    |..++.+|+|.|+|.
T Consensus       384 ~P~i~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~----i~~v~~~d~G~Y~C~  459 (477)
T 2id5_A          384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLE----VRYAQVQDNGTYLCI  459 (477)
T ss_dssp             EEEESCCSCEEEEEETTCCEEECCCEEEESCCEEEEECTTSCBC-------CEECTTSCEE----ESSCCSTTCEEEEEE
T ss_pred             cccccccccccEEEeCCCeEEEEEeccccCCCEEEEEECCccccccCCCceEEeCCCCEEE----EeeCChHHCEEEEEE
Confidence            444443 35678899999999999999999999999999877653211 222334467765    666799999999999


Q ss_pred             EEeCCCceeEEEEEEEEcc
Q psy18191        209 ARNELGFARSKNATLDVAG  227 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~  227 (238)
                      |.|..|... ..++|.|.+
T Consensus       460 a~N~~g~~~-~~~~l~V~~  477 (477)
T 2id5_A          460 AANAGGNDS-MPAHLHVRS  477 (477)
T ss_dssp             EEETTEEEE-EEEEEEEEC
T ss_pred             EEeCCCcEE-EEEEEEEeC
Confidence            999999996 599998863

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.26  E-value=2e-11  Score=96.82  Aligned_cols=122  Identities=14%  Similarity=0.198  Sum_probs=63.9

Q ss_pred             CCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeC-----CCE
Q psy18191         88 ASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYP-----EPR  162 (238)
Q Consensus        88 ~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P-----~p~  162 (238)
                      +.+.|+|.|+|.+.+...     ..           ....+..+|.+...|..+.+.+|+++.|.|.+.|.|     .|.
T Consensus        11 v~~~dsg~Y~C~a~g~~~-----~~-----------~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~   74 (254)
T 2c1o_A           11 VRPGTSVKLSCKASGYSF-----TN-----------YWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTY   74 (254)
T ss_dssp             -------------------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBC
T ss_pred             ecCCccEEEEEcCchhhh-----hh-----------hhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCc
Confidence            567888888876653111     00           001122367777778889999999999999999988     489


Q ss_pred             EEEEeC--CEEee----------ccCCccEEEe-cCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191        163 IEWYKD--GSLVS----------AEIGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG  227 (238)
Q Consensus       163 i~W~~~--g~~l~----------~~~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~  227 (238)
                      +.|+++  +..+.          .....+.... ..+...  +.|..++.+|+|.|.|.|.|..+........|.|..
T Consensus        75 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~  150 (254)
T 2c1o_A           75 LNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFT--LKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKR  150 (254)
T ss_dssp             EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEE--EEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECC
T ss_pred             eEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEE--EEECcCCcccCEEEEEEEEcCcceEecCCEEEEECC
Confidence            999974  32221          0001122111 222222  237888999999999999998765433345677754

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.25  E-value=1.9e-11  Score=93.70  Aligned_cols=97  Identities=22%  Similarity=0.383  Sum_probs=71.4

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeec---------cCCccEEEecCCcEEEEEeecCCCCCC
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA---------EIGSHRILLPAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~---------~~~~~~~~~~~~~l~~~~vi~~v~~~d  201 (238)
                      |+.+...+..+.+.+|+++.|.|.+.|.|.+.+.|++++..+..         .....+....++.|.    |..++.+|
T Consensus         1 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~----i~~v~~~D   76 (212)
T 1f97_A            1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGIT----FSSVTRKD   76 (212)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEE----ESCCCGGG
T ss_pred             CceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEE----EcccCccc
Confidence            34566777888999999999999999999999999998755311         001122333345555    56669999


Q ss_pred             CeEEEEEEEeCCC--ceeEEEEEEEEccCCCCC
Q psy18191        202 SGVYWCVARNELG--FARSKNATLDVAGKISTA  232 (238)
Q Consensus       202 ~G~Y~C~a~N~~G--~~~s~~~~L~V~~~~~~~  232 (238)
                      +|.|+|.|.|..|  ... ..+.|.|..++..+
T Consensus        77 ~G~Y~C~~~~~~g~~~~~-~~~~l~V~~~p~~~  108 (212)
T 1f97_A           77 NGEYTCMVSEEGGQNYGE-VSIHLTVLVPPSKP  108 (212)
T ss_dssp             CEEEEEEEEETTSSSEEE-EEEEEEEEBCCCCC
T ss_pred             CeEEEEEEEccCCCcccE-EEEEEEEEcCCCCc
Confidence            9999999999987  343 58888888776554

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.25  E-value=3.1e-11  Score=103.98  Aligned_cols=149  Identities=15%  Similarity=0.093  Sum_probs=84.7

Q ss_pred             ccEEEecccccccc---------ce----EEEEEcCCCCCCCCCceEEEeCCCcccCCceEE--eCCCC---cceecc-e
Q psy18191         64 PICLRFQDLLPQSK---------QG----LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKK--YHPPS---LPLFPG-V  124 (238)
Q Consensus        64 ~~~~w~~~~~~~~~---------~g----~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~--~~~~~---~~~~~~-~  124 (238)
                      +.+.|++++..+..         .+    ...|.+..+..+| |.|+|.+.+..  |.....  +....   .+.... .
T Consensus       164 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~--~~~~~~~~v~~~~~~~~~~~~~~~  240 (457)
T 1hzh_H          164 VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKP--SNTKVDKKAEPKSCDKTHTCPPCP  240 (457)
T ss_dssp             CEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGG--GTEEEEEECCCCCSCSSCSCCSCC
T ss_pred             eEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCC--CCcceeEEecccCCCcccccCCCC
Confidence            67999999854321         11    1245666666667 88887665522  111110  00000   000000 0


Q ss_pred             ecCCccCCEE-EeCCCceE-EeCCCcEEEEEEEeeeCCC----EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCC
Q psy18191        125 HGDGYRVPRI-TEHPASAV-VPRHEPTTLNCKADGYPEP----RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKK  198 (238)
Q Consensus       125 ~~~v~~~P~i-~~~~~~~~-~~~G~~~~L~C~~~g~P~p----~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~  198 (238)
                      ...+..+|.+ ...|.... +.+|+++.|.|.+.|.|++    .+.|++++..+............++.+.+...+. +.
T Consensus       241 ~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~-i~  319 (457)
T 1hzh_H          241 APELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLT-VL  319 (457)
T ss_dssp             CCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEEC-CC
T ss_pred             CccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEE-EC
Confidence            0012236665 44443332 5789999999999998653    9999999988763211122334567776655432 35


Q ss_pred             CCC---CeEEEEEEEeCCCce
Q psy18191        199 DTD---SGVYWCVARNELGFA  216 (238)
Q Consensus       199 ~~d---~G~Y~C~a~N~~G~~  216 (238)
                      ..|   .|.|+|.|.|..+..
T Consensus       320 ~~d~~d~G~Y~C~a~n~~~~~  340 (457)
T 1hzh_H          320 HQDWLNGKEYKCKVSNKALPA  340 (457)
T ss_dssp             HHHHHHTCCEEEEEECTTSSS
T ss_pred             HHHccCCCcEEEEEeCCCCCC
Confidence            566   999999999876654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.25  E-value=1.2e-11  Score=106.85  Aligned_cols=98  Identities=22%  Similarity=0.384  Sum_probs=71.2

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC-CEEeeccCC-ccEEEecCCcEEEEEeecCCCCCCCeEEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD-GSLVSAEIG-SHRILLPAGSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~-g~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      ..+|.+...+....+.+|+++.|.|.+.  |.|.+.|+++ +..+..... .+.....+|+|.    |..++.+|+|.|+
T Consensus       350 C~~P~i~~~~~~~~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~~~~~~~~~~~g~L~----i~~v~~~D~G~Y~  423 (452)
T 3zyi_A          350 CSAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLN----FSHVLLSDTGVYT  423 (452)
T ss_dssp             CCCCCCSBCCCCEECCTTSCCEECCBCC--TTSEEEEECTTSCEECSSCCCSSCEECTTSCEE----CSSCCTTCCEEEE
T ss_pred             ccCcccccccccccccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccCCCCCCEEECCCCeEE----EeecCHHHCEEEE
Confidence            4578887778889999999999999987  9999999995 444432211 223344567776    6677999999999


Q ss_pred             EEEEeCCCceeEEEEEEEEccCCCCCC
Q psy18191        207 CVARNELGFARSKNATLDVAGKISTAT  233 (238)
Q Consensus       207 C~a~N~~G~~~s~~~~L~V~~~~~~~~  233 (238)
                      |.|.|..|... .++.|.|.+.+.++.
T Consensus       424 C~a~N~~G~~~-~~~~l~v~~~~~~~~  449 (452)
T 3zyi_A          424 CMVTNVAGNSN-ASAYLNVSTAGTHHH  449 (452)
T ss_dssp             EEEECSSCEEE-EEEEEEC--------
T ss_pred             EEEEcCCCcEE-EEEEEEEEcccccCC
Confidence            99999999997 599999988776654

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.25  E-value=5.3e-11  Score=91.65  Aligned_cols=88  Identities=15%  Similarity=0.214  Sum_probs=62.6

Q ss_pred             eCCCce-EEeCCCcEEEEEEEeeeCCCEEEEEeCC-EEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191        136 EHPASA-VVPRHEPTTLNCKADGYPEPRIEWYKDG-SLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       136 ~~~~~~-~~~~G~~~~L~C~~~g~P~p~i~W~~~g-~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~  213 (238)
                      ..|.+. .+.+|+++.|.|.+.|.|.|.+.|+++. ..+.     ...........  ..|..++.+|+|.|.|.|.|..
T Consensus         5 i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~-----~~~~~~~~~~~--L~I~~v~~~D~G~Y~C~a~n~~   77 (202)
T 1vca_A            5 TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN-----GKVTNEGTTST--LTMNPVSFGNEHSYLCTATCES   77 (202)
T ss_dssp             EESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS-----SEEEEETTEEE--EEESSCCGGGCSEEEEEEEETT
T ss_pred             ECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc-----ceEEEcCCccE--EEECcCCHHHCEEEEEEEEECC
Confidence            334444 4459999999999999999999999843 2211     11111122111  2377889999999999999999


Q ss_pred             CceeEEEEEEEEccCCCC
Q psy18191        214 GFARSKNATLDVAGKIST  231 (238)
Q Consensus       214 G~~~s~~~~L~V~~~~~~  231 (238)
                      |... ..+.|.|..++..
T Consensus        78 ~~~~-~~~~l~V~~~p~~   94 (202)
T 1vca_A           78 RKLE-KGIQVEIYSFPKD   94 (202)
T ss_dssp             EEEE-EEEEEEEEBCCSC
T ss_pred             ceEe-eEEEEEEEeCCCC
Confidence            8875 6999999876654

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.24  E-value=4.1e-11  Score=92.73  Aligned_cols=87  Identities=10%  Similarity=0.147  Sum_probs=60.9

Q ss_pred             CEEEeCCCceEEeCCCcEEEEEEEe-eeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        132 PRITEHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       132 P~i~~~~~~~~~~~G~~~~L~C~~~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      |.|... .+..+.+|+.+.|.|.+. +.|.|.++|++||..+..+ ...++......-...++|..+..+|+|.|+|.|.
T Consensus         4 p~~~~~-~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~-~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~   81 (207)
T 3rbs_A            4 PFTKSE-LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEG-PKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ   81 (207)
T ss_dssp             --CCEE-EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSS-SSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEE
T ss_pred             CeeecC-CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccC-CCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEE
Confidence            455443 367889999999999986 5799999999999999754 3334444331112223478889999999999999


Q ss_pred             eCCCceeEEEEEE
Q psy18191        211 NELGFARSKNATL  223 (238)
Q Consensus       211 N~~G~~~s~~~~L  223 (238)
                      |  |.... .+.+
T Consensus        82 N--g~a~~-~~~~   91 (207)
T 3rbs_A           82 D--GKATN-HSTV   91 (207)
T ss_dssp             E--TTEEE-EEEE
T ss_pred             C--CCeEE-EEEE
Confidence            9  55532 4444

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.24  E-value=4.4e-11  Score=95.25  Aligned_cols=136  Identities=12%  Similarity=0.128  Sum_probs=75.4

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEee-eCC
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADG-YPE  160 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g-~P~  160 (238)
                      .|.|.++..+|+|.|.|...+... + +.-.+.  ....+. +......+|.+...+....+..|+.+.|.|.+.| .|.
T Consensus        80 sL~I~~v~~~DsG~Y~C~~~~~~~-~-~~~~~~--~~~~l~-V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~  154 (253)
T 3liz_H           80 FLQMSSLKSEDTAMYYCTRDPAGR-A-WFAYWG--QGTLVT-VSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPE  154 (253)
T ss_dssp             EEEECSCCGGGCEEEEEEECCBTT-T-BCCEEC--CCEEEE-ECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSS
T ss_pred             EEEECCCChhhCEEEEEEEecCCc-c-eeeEEC--CCEEEE-EeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCC
Confidence            477777778888888866554210 0 000000  001111 1112346777765444455667999999999988 676


Q ss_pred             C-EEEEEeCCEEeeccCCccEEEecCCcEE--EEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191        161 P-RIEWYKDGSLVSAEIGSHRILLPAGSLF--FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA  226 (238)
Q Consensus       161 p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~--~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~  226 (238)
                      | .+.|++++..+........ .. .+...  ....|..+...| |.|+|.|.|..+... ....|.+.
T Consensus       155 ~~~v~W~~~~~~~~~~~~~~~-~~-~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~-~~~~~~~~  219 (253)
T 3liz_H          155 PVTVTWNSGSLSSGVHTFPAV-LQ-SDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK-VDKKIVPR  219 (253)
T ss_dssp             CCEEEEGGGTBCTTEEECCCE-EE-TTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEE-EEEECCCC
T ss_pred             CeEEEEEeCCeecceEeCCcc-cc-CCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcc-eEEEecCc
Confidence            7 8999999864321101111 11 13222  122356668888 999999999998775 36666654

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.24  E-value=1.1e-11  Score=102.09  Aligned_cols=85  Identities=14%  Similarity=0.172  Sum_probs=54.6

Q ss_pred             cCCEE-EeCCCceEEeCCCcEEEEEEEeee-CCC---EEEEEeCC-EEeeccCCccEEE-ecCCcEE--EEEeecCCCCC
Q psy18191        130 RVPRI-TEHPASAVVPRHEPTTLNCKADGY-PEP---RIEWYKDG-SLVSAEIGSHRIL-LPAGSLF--FLSLVHGKKDT  200 (238)
Q Consensus       130 ~~P~i-~~~~~~~~~~~G~~~~L~C~~~g~-P~p---~i~W~~~g-~~l~~~~~~~~~~-~~~~~l~--~~~vi~~v~~~  200 (238)
                      .+|.+ ...|....+.+|+++.|.|.+.|. |.|   .+.|++++ ..+...  ..... ..++...  ..+.|..+..+
T Consensus       111 ~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~--~~~~~~~~~g~~~~~~~L~I~~~~~~  188 (323)
T 2wqr_A          111 RGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHS--TRKEEKQRNGTLTVTSTLPVGTRDWI  188 (323)
T ss_dssp             GGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCC--CCEEEECTTSCEEEEEEEECCHHHHH
T ss_pred             CCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccc--cCCCccCCCCCEEEEEEEEECHHHcc
Confidence            34544 444555667899999999999886 566   89999975 443321  11111 1223211  12236666899


Q ss_pred             CCeEEEEEEEeCCCce
Q psy18191        201 DSGVYWCVARNELGFA  216 (238)
Q Consensus       201 d~G~Y~C~a~N~~G~~  216 (238)
                      |.|.|+|.|.|..+..
T Consensus       189 D~G~Y~C~a~n~~~~~  204 (323)
T 2wqr_A          189 EGETYQCRVTHPHLPR  204 (323)
T ss_dssp             TTCCEEEEEECTTSSS
T ss_pred             CCCCEEEEEECCCCCC
Confidence            9999999999987543

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.24  E-value=2.2e-11  Score=97.53  Aligned_cols=127  Identities=13%  Similarity=0.105  Sum_probs=72.5

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecce-ecCCccCCEEEe-CCCceEEeCCCcEEEEEEEeee
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGV-HGDGYRVPRITE-HPASAVVPRHEPTTLNCKADGY  158 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~-~~~v~~~P~i~~-~~~~~~~~~G~~~~L~C~~~g~  158 (238)
                      ..|.|.++..+|+|.|.|...+....+    ...  ....+... ......+|.+.. .+....+.+|+.+.|.|.+.|.
T Consensus       100 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~----~~~--~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~  173 (268)
T 3pl6_D          100 STLKIQRTERGDSAVYLCATSALGDTQ----YFG--PGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGF  173 (268)
T ss_dssp             EEEEECSCCGGGCEEEEEEEESSSSSC----EEC--CCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEE
T ss_pred             EEEEECCCCcccCEEEEEEEecCCCce----eeC--CcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcc
Confidence            346677777777777776655321000    000  01111100 001223676544 3555556679999999999987


Q ss_pred             CCC--EEEEEeCCEEeeccCCccEEE---------ecCCcEEEEE--eecCCCCCC-CeEEEEEEEeCCCce
Q psy18191        159 PEP--RIEWYKDGSLVSAEIGSHRIL---------LPAGSLFFLS--LVHGKKDTD-SGVYWCVARNELGFA  216 (238)
Q Consensus       159 P~p--~i~W~~~g~~l~~~~~~~~~~---------~~~~~l~~~~--vi~~v~~~d-~G~Y~C~a~N~~G~~  216 (238)
                      |++  .++|+++|..+...   ....         ..++...+..  .|.....+| .|.|+|.|.|.....
T Consensus       174 ~p~~~~v~W~~~g~~l~~~---~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~  242 (268)
T 3pl6_D          174 YPDHVELSWWVNGKEVHSG---VCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  242 (268)
T ss_dssp             BSSCEEEEEEESSSEECTT---EEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             cCCCeEEEEEECCEECCCC---eEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCC
Confidence            665  89999999888642   1111         0234443321  233334555 999999999986553

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.24  E-value=4.6e-11  Score=92.76  Aligned_cols=88  Identities=27%  Similarity=0.429  Sum_probs=71.5

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      ...+.|...|.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+...        ..+.|.    |..+..+|+|.|+|.
T Consensus        16 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~--------~~~~L~----i~~v~~~d~G~Y~C~   83 (218)
T 3k0w_A           16 PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG--------NTSELI----FNAVHVKDAGFYVCR   83 (218)
T ss_dssp             ---CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC--------CSSEEE----ETTCCGGGCEEEEEE
T ss_pred             CCCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC--------CCCEEE----EccCChhhCeEeEEE
Confidence            35678888899999999999999999999999999999999887642        123444    667799999999999


Q ss_pred             EEeCCCceeEEEEEEEEccC
Q psy18191        209 ARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~~  228 (238)
                      |.|..|...+..+.|.|...
T Consensus        84 ~~n~~~~~~s~~~~l~V~~~  103 (218)
T 3k0w_A           84 VNNNFTFEFSQWSQLDVCDI  103 (218)
T ss_dssp             EECTTCCEECCCEEEEEECC
T ss_pred             EEcCCCCceeeEEEEEEEcc
Confidence            99999876555788888665

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.23  E-value=1.3e-11  Score=98.61  Aligned_cols=137  Identities=12%  Similarity=0.091  Sum_probs=82.0

Q ss_pred             cEEEeccccccccc-----eEEEEEc-CCCCCCCCC--ceEEEeCCCcccCCceEEeCCCCcceecceecCCcc--CCEE
Q psy18191         65 ICLRFQDLLPQSKQ-----GLMYLVG-SQASPDYPN--RFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYR--VPRI  134 (238)
Q Consensus        65 ~~~w~~~~~~~~~~-----g~~~l~~-~~~~~~~~g--~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~--~P~i  134 (238)
                      .+.|++++..+...     +..++.. ..+...|.|  .|+|.+.+...  .           ......+.+..  +|.+
T Consensus        37 ~v~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~--~-----------~~~~~~l~V~~~p~p~~  103 (265)
T 2oz4_A           37 QVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQ--S-----------QETLQTVTIYSFPAPNV  103 (265)
T ss_dssp             EEEEEETTEECCCEEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTE--E-----------EEEEEEEEEECCCCCEE
T ss_pred             EEEEEeCCEECCceEeeCCCeEEEEeecccccccCCcceEEEEEecCCC--C-----------cEEEEEEEEeCCCCcee
Confidence            89999998765431     1111111 122455666  47766554321  1           11111111222  4555


Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCC-
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNEL-  213 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~-  213 (238)
                      ..  ....+.+|+.+.|.|.+.  |.|.+.|  +|..+...  ..     .+.|.    |..+...|.|.|+|.|.|.. 
T Consensus       104 ~~--~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~--~~-----~~~l~----i~~~~~~~~g~Y~C~a~n~~~  166 (265)
T 2oz4_A          104 IL--TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPL--GP-----RAQLL----LKATPEDNGRSFSCSATLEVA  166 (265)
T ss_dssp             EE--SCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCC--SS-----EECCE----EECCGGGTTEEEEEEEEEECS
T ss_pred             ec--CCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCC--CC-----cEEEE----EccccccCCceEEEEEEcCCC
Confidence            53  456688899999999998  9999999  87776421  11     12233    45558889999999998654 


Q ss_pred             Ccee--EEEEEEEEccCCCC
Q psy18191        214 GFAR--SKNATLDVAGKIST  231 (238)
Q Consensus       214 G~~~--s~~~~L~V~~~~~~  231 (238)
                      |...  +..+.|.|..++..
T Consensus       167 g~~~~~s~~~~l~V~~~p~~  186 (265)
T 2oz4_A          167 GQLIHKNQTRELRVLYGPRL  186 (265)
T ss_dssp             SSEEEEEEEEEEEEEEEEEC
T ss_pred             CCcccccccEEEEEEeCCcc
Confidence            7653  24677888765543

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.23  E-value=1.2e-10  Score=94.69  Aligned_cols=145  Identities=13%  Similarity=0.169  Sum_probs=81.4

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceeccee-----------cCCccCCEEEeCCCceEEeCCCcE
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVH-----------GDGYRVPRITEHPASAVVPRHEPT  149 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~-----------~~v~~~P~i~~~~~~~~~~~G~~~  149 (238)
                      ..|.|.++.++|+|.|.|...+.. .|.+.-.+...  ..+.+..           .....++.+...|..+.+.+|+++
T Consensus       101 ~sL~I~~v~~~DsG~Y~C~~~~~~-~g~~~~~~~~~--~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v  177 (291)
T 2gki_A          101 AYMELSSLTSEDSAVYYCARGAYK-RGYAMDYWGQG--TSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKV  177 (291)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECGG-GTTCEEEECCC--EEEEECC----------------CCCEECSCSEEEEETTSCE
T ss_pred             EEEEECcCCHHHCEEEEEEEeccc-cccccceeCCC--cEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcE
Confidence            468888999999999997766532 12111111110  0111000           001124556666777889999999


Q ss_pred             EEEEEEeeeCCC------EEEEEeCC--EE---eeccC-------CccEEE-ecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        150 TLNCKADGYPEP------RIEWYKDG--SL---VSAEI-------GSHRIL-LPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       150 ~L~C~~~g~P~p------~i~W~~~g--~~---l~~~~-------~~~~~~-~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      .|.|.+.+.|.+      .+.|+++.  ..   +....       ..+... ......  .+.|..++.+|+|.|.|.|.
T Consensus       178 ~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~--~L~I~~v~~~DsG~Y~C~a~  255 (291)
T 2gki_A          178 TMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDF--TLTISSVQAEDLAVYYCKQS  255 (291)
T ss_dssp             EEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEE--EEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEE--EEEECCCCHHHCEEEEEEEc
Confidence            999999988876      89999962  21   11100       111111 112211  22378889999999999999


Q ss_pred             eCCCceeEEEEEEEEccCCC
Q psy18191        211 NELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       211 N~~G~~~s~~~~L~V~~~~~  230 (238)
                      |.....-..-..|.|.+.+.
T Consensus       256 ~~~~~~fg~gt~l~v~~~~~  275 (291)
T 2gki_A          256 YYHMYTFGSGTKLEIKHHHH  275 (291)
T ss_dssp             ETTEEEECCCEEEEEECC--
T ss_pred             cCCceEEcCCEEEEEEeeEc
Confidence            95432222233566655543

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.23  E-value=1.9e-11  Score=94.49  Aligned_cols=87  Identities=22%  Similarity=0.248  Sum_probs=61.9

Q ss_pred             ceEEeCCCcEEEEEE---EeeeCCCEEEEEeCCEEeecc----------------CCccEEEecCCcEEEEEeecCCCCC
Q psy18191        140 SAVVPRHEPTTLNCK---ADGYPEPRIEWYKDGSLVSAE----------------IGSHRILLPAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~---~~g~P~p~i~W~~~g~~l~~~----------------~~~~~~~~~~~~l~~~~vi~~v~~~  200 (238)
                      ++++..|+++.|.|.   +.+.|.|.++|+|+|..+...                ..........+...  +.|..++.+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--L~I~~v~~~   79 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFF--LVVTAANIS   79 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEE--EEESSCCGG
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEE--EEEccCCHH
Confidence            578899999999994   578899999999986432110                00001111222222  247888999


Q ss_pred             CCeEEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        201 DSGVYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       201 d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      |+|.|+|.|.|..|... ..+.|.|..++
T Consensus        80 D~G~Y~C~a~n~~g~~~-~~~~l~V~~p~  107 (203)
T 4fa8_A           80 HDGNYLCRMKLGETEVT-KQEHLSVVKPL  107 (203)
T ss_dssp             GCEEEEEEEEETTEEEE-EEEEEEEEEEE
T ss_pred             HCeEEEEEEEcCCCcEE-EEEEEEecCCc
Confidence            99999999999999996 48899987654

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.23  E-value=9.4e-12  Score=95.20  Aligned_cols=95  Identities=19%  Similarity=0.306  Sum_probs=68.5

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      ..+|.|...|. ..+.+|+++.|.|.+.+.|. .+.|+|+|..+.............+.|.    |..++.+|+|.|+|.
T Consensus         3 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~----i~~v~~~D~G~Y~C~   76 (198)
T 1ugn_A            3 LPKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFP----IPSITWEHTGRYRCY   76 (198)
T ss_dssp             CCCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEE----ESSCCGGGCEEEEEE
T ss_pred             CCCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEE----ECCCCHHHCeEEEEE
Confidence            35788887776 47899999999999998875 6999999987642111111112345555    566799999999999


Q ss_pred             EEeCC-Cc-eeEEEEEEEEccCC
Q psy18191        209 ARNEL-GF-ARSKNATLDVAGKI  229 (238)
Q Consensus       209 a~N~~-G~-~~s~~~~L~V~~~~  229 (238)
                      |.|.. |. ..+..+.|.|...+
T Consensus        77 a~n~~~g~~~~s~~~~l~V~~~~   99 (198)
T 1ugn_A           77 YGSDTAGRSESSDPLELVVTGAY   99 (198)
T ss_dssp             EEETTTEECCCCCCEEEEEECSS
T ss_pred             EECCCCCcccCCccEEEEEcccc
Confidence            99988 62 22357888887744

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.22  E-value=9.6e-11  Score=89.57  Aligned_cols=95  Identities=21%  Similarity=0.233  Sum_probs=65.9

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCC-----CEEEEEeCCEEeeccCCccEEEecC----CcEEEEEeecCCCCCCCeE
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPE-----PRIEWYKDGSLVSAEIGSHRILLPA----GSLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~-----p~i~W~~~g~~l~~~~~~~~~~~~~----~~l~~~~vi~~v~~~d~G~  204 (238)
                      +...+..+.+.+|+++.|.|.+.+.|.     +.+.|++++..+... ..+.....+    +...+  .|..++.+|+|.
T Consensus         5 v~~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~-~~r~~~~~~~~~~~~~~L--~I~~v~~~D~G~   81 (202)
T 3bp6_B            5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQ-SERATLLEEQLPLGKALF--HIPSVQVRDSGQ   81 (202)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCB-CSSCEECGGGGGGTEEEE--EECSCCGGGCEE
T ss_pred             EecCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCccccc-CCceEEeeccccCCeeEE--EECCCCHHHCcE
Confidence            334445678899999999999999886     899999944333322 122222221    22222  277889999999


Q ss_pred             EEEEEEeCCCceeEEEEEEEEccCCCCC
Q psy18191        205 YWCVARNELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       205 Y~C~a~N~~G~~~s~~~~L~V~~~~~~~  232 (238)
                      |+|.|.|..|... ..+.|.|..++..+
T Consensus        82 Y~C~~~~~~~~~~-~~~~l~V~~~~~~p  108 (202)
T 3bp6_B           82 YRCLVICGAAWDY-KYLTVKVKASYMRI  108 (202)
T ss_dssp             EEEEEEETTEEEE-EEEEEEEEBCCCCE
T ss_pred             EEEEEEeCCCcce-EEEEEEecCCCCcc
Confidence            9999999999875 59999998765443

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.22  E-value=3.1e-11  Score=91.66  Aligned_cols=94  Identities=18%  Similarity=0.235  Sum_probs=65.8

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .+|.|...|.. .+.+|++++|.|.+.+ +.+.+.|+|+|..+............++.|.    |..++.+|+|.|+|.|
T Consensus         3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~----I~~v~~~D~G~Y~C~~   76 (188)
T 1oll_A            3 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFY----IPDMNSRMAGQYSCIY   76 (188)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEE----ESSCCGGGCEEEEEEE
T ss_pred             CCCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccccCCCcceeEEE----eCcCCcccCeEEEEEe
Confidence            47888887776 7899999999999876 4578999999987753101100001122232    6778999999999999


Q ss_pred             EeCCCce-eEEEEEEEEccCC
Q psy18191        210 RNELGFA-RSKNATLDVAGKI  229 (238)
Q Consensus       210 ~N~~G~~-~s~~~~L~V~~~~  229 (238)
                      .|..|.. .+..+.|.|.+..
T Consensus        77 ~~~~~~~~~s~~~~l~V~~~~   97 (188)
T 1oll_A           77 RVGELWSEPSNLLDLVVTEMY   97 (188)
T ss_dssp             EETTEECCCCCCEEEEEESCS
T ss_pred             cCCCCCCCCCCceEEEecccC
Confidence            9976532 2357788887543

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.22  E-value=1.2e-11  Score=102.86  Aligned_cols=89  Identities=21%  Similarity=0.326  Sum_probs=55.0

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCC--CEEEEEeCCEEeeccCCccEEEecCCcEEEEEe--ecCCCCCCCe
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPE--PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSL--VHGKKDTDSG  203 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~v--i~~v~~~d~G  203 (238)
                      ...+|.+...+.......|+.+.|.|.+.|.++  +.+.|+++|..+............+|++.+...  |.....+|.|
T Consensus       239 ~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g  318 (344)
T 1za6_B          239 QPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGN  318 (344)
T ss_dssp             CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTC
T ss_pred             CCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCC
Confidence            346777765433222235777999999999633  689999999877532111112234555544332  2222345699


Q ss_pred             EEEEEEEeCCCce
Q psy18191        204 VYWCVARNELGFA  216 (238)
Q Consensus       204 ~Y~C~a~N~~G~~  216 (238)
                      .|+|.|.|.....
T Consensus       319 ~YtC~a~~~~l~~  331 (344)
T 1za6_B          319 VFSCSVMHEALHN  331 (344)
T ss_dssp             EEEEEEECTTSTT
T ss_pred             eEEEEEEcCCCCC
Confidence            9999999977554

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.22  E-value=9.7e-11  Score=92.53  Aligned_cols=124  Identities=14%  Similarity=0.205  Sum_probs=68.8

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCC--------ccCCEEEeCCCceEEeCCCcEEEE
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDG--------YRVPRITEHPASAVVPRHEPTTLN  152 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v--------~~~P~i~~~~~~~~~~~G~~~~L~  152 (238)
                      ..|.|.++.++|+|.|.|.+.+...  .   .+..  ...+.+.....        ..++.....+....+.+|+++.|.
T Consensus        76 ~~L~I~~v~~~D~G~Y~C~~~n~~~--~---~~~~--~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~  148 (247)
T 1svz_A           76 FTLKISRVEAEDLGIYYCFQGSHFP--P---TFGG--GTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKIS  148 (247)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSS--C---EECC--CEEEEEC---------------CCEEEECCCEEECTTCCEEEE
T ss_pred             EEEEECCCCHHHCEEEEEEEccCCc--c---EECC--CEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEE
Confidence            3678888889999999977665311  0   0000  01111000000        002222333344568999999999


Q ss_pred             EEEeeeC--CCEEEEEeCC--EEee----cc-----------CCccEEEec--CCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        153 CKADGYP--EPRIEWYKDG--SLVS----AE-----------IGSHRILLP--AGSLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       153 C~~~g~P--~p~i~W~~~g--~~l~----~~-----------~~~~~~~~~--~~~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      |.+.+.|  .+.+.|++++  ..+.    ..           ...+.....  .+. ...+.|..++.+|+|.|.|.|.|
T Consensus       149 C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~L~I~~v~~~DsG~Y~C~a~n  227 (247)
T 1svz_A          149 CKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTS-TAFLQINNLKNEDTATYFCVRDR  227 (247)
T ss_dssp             EEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGT-EEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCC-EEEEEECCCChhHCEEEEEEEec
Confidence            9999875  5789999963  2110    00           011111111  111 11223788899999999999999


Q ss_pred             C
Q psy18191        212 E  212 (238)
Q Consensus       212 ~  212 (238)
                      .
T Consensus       228 ~  228 (247)
T 1svz_A          228 H  228 (247)
T ss_dssp             G
T ss_pred             c
Confidence            5

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.21  E-value=4.9e-11  Score=100.05  Aligned_cols=86  Identities=17%  Similarity=0.197  Sum_probs=67.5

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccC-CccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEI-GSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~-~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      +..+.+.+|+++.|.|.+.| |.|.+.|++++..+.... ...++...++.|.    |..++.+|+|.|+|.|.|..|..
T Consensus       253 ~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~~~~~L~----I~~v~~~D~G~Y~C~a~N~~g~~  327 (361)
T 2xot_A          253 ESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLF----FKKVQVEDGGVYTCYAMGETFNE  327 (361)
T ss_dssp             CCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEEETTEEE----ESSCCTTSCEEEEEEEECSSCEE
T ss_pred             ccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEeecCeEE----EeecCcccCEEEEEEEecCCCcc
Confidence            45678999999999999999 999999999776544321 1112223667765    66779999999999999999999


Q ss_pred             eEEEEEEEEccCC
Q psy18191        217 RSKNATLDVAGKI  229 (238)
Q Consensus       217 ~s~~~~L~V~~~~  229 (238)
                      . ..+.|.|...+
T Consensus       328 ~-~~~~l~V~~~~  339 (361)
T 2xot_A          328 T-LSVELKVYNFT  339 (361)
T ss_dssp             E-EEEEEEEESSC
T ss_pred             E-EEEEEEEEeee
Confidence            6 59999997654

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=99.21  E-value=2.3e-11  Score=83.93  Aligned_cols=91  Identities=16%  Similarity=0.179  Sum_probs=62.9

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .+|.|...|.. .+.+|++++|.|.+.+. .+.+.|+|+|..+...    +.........  ..|..++.+|+|.|.|.+
T Consensus         4 ~kP~i~~~p~~-~v~~G~~VtL~C~~~~~-~~~~~w~k~g~~~~~~----~~~~~~~~~~--l~I~~v~~~dsG~Y~C~~   75 (105)
T 2vsd_A            4 PQPSLSLHPSQ-GVSLGDTVTLRCHLPRM-AAWVQLWLNGTLRFDK----EKDKEQDAAE--FSFAVTNLEDAGTYQCRY   75 (105)
T ss_dssp             CCCEEEEESCS-SCCTTCEEEEEEECCSS-CEEEEEEETTEEEEEE----EECTTCSEEE--EEEECCSGGGCEEEEEEE
T ss_pred             CCCEEEeCCCC-CcCcCCCEEEEEEcCCC-CcEEEEEECCccceee----eccCCCCEEE--EEECCCCHHHCeEEEEEE
Confidence            57888877765 68899999999998765 4678999999766421    1111111111  126677999999999999


Q ss_pred             EeCC---CceeEEEEEEEEccC
Q psy18191        210 RNEL---GFARSKNATLDVAGK  228 (238)
Q Consensus       210 ~N~~---G~~~s~~~~L~V~~~  228 (238)
                      .|..   .+..|..+.|.|.+.
T Consensus        76 ~n~~~~~~s~~Sdpl~L~V~~~   97 (105)
T 2vsd_A           76 QVSEPLWTSNQSDPVELVLTIE   97 (105)
T ss_dssp             EEETTEEECCCCCCEEECCC--
T ss_pred             EcCCCCcccCCCCCEEEEEEEe
Confidence            9964   334456788887654

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.21  E-value=4.1e-11  Score=94.20  Aligned_cols=140  Identities=19%  Similarity=0.120  Sum_probs=78.0

Q ss_pred             cEEEecccccc-cc---------ce----EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecC--C
Q psy18191         65 ICLRFQDLLPQ-SK---------QG----LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGD--G  128 (238)
Q Consensus        65 ~~~w~~~~~~~-~~---------~g----~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~--v  128 (238)
                      .+.|++++..+ ..         .|    ...|.+..+..+|+|.|+|.+.+...  .        ...... +...  .
T Consensus        47 ~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~--~--------~~~~~~-v~~~~~~  115 (231)
T 2w59_A           47 SVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEEL--P--------LPLSKS-VYRNTGP  115 (231)
T ss_dssp             EEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTC--S--------SCEEEE-ECCCCSC
T ss_pred             EEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCC--C--------CceEEE-EecCCCC
Confidence            89999988755 21         11    12355555556667777765554211  0        001111 1110  2


Q ss_pred             ccCCEEEeC-CCceEEeCCCcEEEEEEEeee-C-CCEEEEEeCCEEeeccCCcc--EEEe--------cC-CcEEEEE--
Q psy18191        129 YRVPRITEH-PASAVVPRHEPTTLNCKADGY-P-EPRIEWYKDGSLVSAEIGSH--RILL--------PA-GSLFFLS--  192 (238)
Q Consensus       129 ~~~P~i~~~-~~~~~~~~G~~~~L~C~~~g~-P-~p~i~W~~~g~~l~~~~~~~--~~~~--------~~-~~l~~~~--  192 (238)
                      ..+|.+... +.... ..|+.+.|.|.+.|. | .+.|.|+++|..+.......  ....        .+ +++.+..  
T Consensus       116 ~~~P~v~v~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L  194 (231)
T 2w59_A          116 TTPPLIYPFAPHPEE-LSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKM  194 (231)
T ss_dssp             CBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEE
T ss_pred             CcCCEEEEeCCCHHH-hccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCcccccccCCCCCeEEEEEEE
Confidence            256766543 33222 235679999999986 4 37899999999986531000  0111        23 5543322  


Q ss_pred             eecCCCCCCCeEEEEEEEeCCCce
Q psy18191        193 LVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       193 vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      .|......|.|.|+|.|.|.....
T Consensus       195 ~i~~~~~~~~g~YtC~v~n~~l~~  218 (231)
T 2w59_A          195 SVETAKWNGGTVFACMAVHEALPM  218 (231)
T ss_dssp             EEEHHHHHTTCCEEEEEECTTSTT
T ss_pred             EEeHHHcCCCCcEEEEEEcCCCCC
Confidence            233345567999999999988654

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.21  E-value=1.5e-10  Score=78.52  Aligned_cols=89  Identities=15%  Similarity=0.162  Sum_probs=63.2

Q ss_pred             ceEEeCCCcEEEEEEEee-eCCCEEEEEeCC----EEeeccCCcc-EEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191        140 SAVVPRHEPTTLNCKADG-YPEPRIEWYKDG----SLVSAEIGSH-RILLPAGSLFFLSLVHGKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g-~P~p~i~W~~~g----~~l~~~~~~~-~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~  213 (238)
                      ..++..|+.+.|.|.+.+ .|.|+|+|.|.+    .++......+ .+...+....+...|..+...|+|.|.|.|.|..
T Consensus        23 ~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~~~  102 (122)
T 1xau_A           23 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS  102 (122)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             cEEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEcCCccEEEEeeCCC
Confidence            467899999999999955 689999999865    3332210101 1222233233333478889999999999999999


Q ss_pred             CceeEEEEEEEEccC
Q psy18191        214 GFARSKNATLDVAGK  228 (238)
Q Consensus       214 G~~~s~~~~L~V~~~  228 (238)
                      |..+++..+|.|.+.
T Consensus       103 g~ieSHs~ti~V~~~  117 (122)
T 1xau_A          103 QVINSHSVTIHVRER  117 (122)
T ss_dssp             EEEECCCEEEEEC--
T ss_pred             CceeeeEEEEEEEee
Confidence            999888889998763

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.21  E-value=2.1e-10  Score=89.53  Aligned_cols=133  Identities=14%  Similarity=0.207  Sum_probs=74.2

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee-C
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY-P  159 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P  159 (238)
                      ..|.|.++..+|+|.|.|...+....+.+.-.+.  ....+. +......+|.+...+....+.+|+.+.|.|.+.|. |
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~--~~~~L~-V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P  155 (223)
T 1dee_B           79 LYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWG--QGTLVT-VSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLP  155 (223)
T ss_dssp             EEEEECSCCGGGCEEEEEEEESSSSTTCCEEEEC--CCEEEE-ECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBS
T ss_pred             EEEEECCCCHHHCEEEEEEEeccccCcccceeec--CcEEEE-EccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeC
Confidence            3577778888888888876554210000000110  011111 11112246666542222235789999999999887 7


Q ss_pred             CC-EEEEEe-CCEEeeccCCccEEEecCCcEEE--EEeecCCCC--CCCeEEEEEEEeCCCcee
Q psy18191        160 EP-RIEWYK-DGSLVSAEIGSHRILLPAGSLFF--LSLVHGKKD--TDSGVYWCVARNELGFAR  217 (238)
Q Consensus       160 ~p-~i~W~~-~g~~l~~~~~~~~~~~~~~~l~~--~~vi~~v~~--~d~G~Y~C~a~N~~G~~~  217 (238)
                      .| .+.|++ +|..+... ........++....  ...|.....  .|.|.|+|.|.|..|...
T Consensus       156 ~p~~v~W~~~~g~~l~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~  218 (223)
T 1dee_B          156 DSITFSWKYKNNSDISST-RGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKE  218 (223)
T ss_dssp             SCCEEEEEETTSCBCSCE-EECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEE
T ss_pred             CCeEEEeEccCCCcccee-EECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCc
Confidence            77 999999 88776420 00000011233222  122444454  678999999999998874

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.21  E-value=6.4e-11  Score=93.41  Aligned_cols=129  Identities=12%  Similarity=0.121  Sum_probs=72.9

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecce-ecCCccCCEEEe-CCCceEEeCCCcEEEEEEEeee
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGV-HGDGYRVPRITE-HPASAVVPRHEPTTLNCKADGY  158 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~-~~~v~~~P~i~~-~~~~~~~~~G~~~~L~C~~~g~  158 (238)
                      ..|.|.++..+|+|.|.|...+......  -.....  ..+... ......+|.+.. .+....+.+|+.+.|.|.+.|.
T Consensus        76 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~--~~~~~~--~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~  151 (245)
T 4ei6_B           76 FTLKIQPTALEDSAVYFCASSFWGAYAE--QFFGPG--TRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGF  151 (245)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSTTCC--CEECCC--EEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEE
T ss_pred             EEEEECCCCHhHCEEEEEEEccCCCcce--EEEcCC--cEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeE
Confidence            3677778888888888876553110000  000000  111100 000124666543 4555556679999999999885


Q ss_pred             -CCC-EEEEEeCCEEeeccCCccEEEe---------cCCcEEEE--EeecCCCCCC-CeEEEEEEEeCCCce
Q psy18191        159 -PEP-RIEWYKDGSLVSAEIGSHRILL---------PAGSLFFL--SLVHGKKDTD-SGVYWCVARNELGFA  216 (238)
Q Consensus       159 -P~p-~i~W~~~g~~l~~~~~~~~~~~---------~~~~l~~~--~vi~~v~~~d-~G~Y~C~a~N~~G~~  216 (238)
                       |.| .+.|+++|..+...   .....         .++...+.  ..|.....+| .|.|+|.|.|.....
T Consensus       152 ~p~~~~v~W~~~g~~l~~~---~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~  220 (245)
T 4ei6_B          152 YPDHVELSWWVNGKEVHSG---VCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE  220 (245)
T ss_dssp             BSSCEEEEEEETTEEECTT---EEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             eCCCeEEEEEECCEECCCC---cccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCCC
Confidence             445 89999999988642   11110         24443321  1233445667 899999999976443

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.20  E-value=9e-11  Score=88.37  Aligned_cols=89  Identities=18%  Similarity=0.174  Sum_probs=65.0

Q ss_pred             ceEEeCCCcEEEEEEEee--eCCCEEEEEeCCEEeec--------cCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        140 SAVVPRHEPTTLNCKADG--YPEPRIEWYKDGSLVSA--------EIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g--~P~p~i~W~~~g~~l~~--------~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .+.+.+|+++.|.|...+  .|.|.|.|+|++..+..        ....+.....++.|.    |..++.+|+|.|+|.|
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~----I~~v~~~D~G~Y~C~~   80 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLK----IKNLTRDDSGTYNVTV   80 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEE----ESSCCGGGCEEEEEEE
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEE----EcccccccCEEEEEEE
Confidence            356789999999996433  56789999999976531        012233334566665    6677999999999999


Q ss_pred             EeCCCce-eEEEEEEEEccCCCCC
Q psy18191        210 RNELGFA-RSKNATLDVAGKISTA  232 (238)
Q Consensus       210 ~N~~G~~-~s~~~~L~V~~~~~~~  232 (238)
                      .|..|.. .+..+.|.|..++..|
T Consensus        81 ~n~~g~~~~~~~~~l~V~~~~~~p  104 (176)
T 1hng_A           81 YSTNGTRILNKALDLRILEMVSKP  104 (176)
T ss_dssp             EETTCCEEEEEEEEEEEECCCCCC
T ss_pred             EeCCCCEEEEEEEEEEEeCCCCCC
Confidence            9999986 3357889998765543

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.20  E-value=1.8e-10  Score=91.81  Aligned_cols=141  Identities=14%  Similarity=0.109  Sum_probs=77.2

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceec------------CCccCCEEEeCCCceEEeCCCcE
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHG------------DGYRVPRITEHPASAVVPRHEPT  149 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~------------~v~~~P~i~~~~~~~~~~~G~~~  149 (238)
                      .|.|.++.++|+|.|.|...+..  |... ...  ....+.+...            .....|.+...+..+.+.+|+++
T Consensus        80 ~L~I~~v~~~DsG~Y~C~~~~~~--~~~~-~~~--~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v  154 (259)
T 3omz_A           80 RMILRNLIENDSGVYYCATWDQN--YYKK-LFG--SGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAV  154 (259)
T ss_dssp             EEEESSCCGGGCEEEEEEEECTT--SSCE-EEC--CCEEEEEEC------------------CEEECCCCCEEEETTCCE
T ss_pred             EEEECCCCcccCEEEEEEEeeCC--cccc-EEC--CCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCE
Confidence            47788888889999987765531  1000 000  0011110000            00114677777888999999999


Q ss_pred             EEEEEEeee-CCCEEEEEeCC--EEee---cc-------CCccEEEe--c---CCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        150 TLNCKADGY-PEPRIEWYKDG--SLVS---AE-------IGSHRILL--P---AGSLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       150 ~L~C~~~g~-P~p~i~W~~~g--~~l~---~~-------~~~~~~~~--~---~~~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      .|.|.+.+. |.+.+.|++++  ..+.   ..       ...+....  .   ...|.    |..++.+|+|.|.|.+.+
T Consensus       155 ~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~----I~~v~~~DsG~Y~C~~~~  230 (259)
T 3omz_A          155 TLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALT----ISALQLEDSAKYFCALGE  230 (259)
T ss_dssp             EECCEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEE----ESSCCGGGCSEEEEEEES
T ss_pred             EEEEECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEE----ECCCChhHCEEEEEEEeC
Confidence            999998875 88999999843  1111   00       00111111  0   12243    677799999999999985


Q ss_pred             CCCc---e-eEEEEEEEEccCCCC
Q psy18191        212 ELGF---A-RSKNATLDVAGKIST  231 (238)
Q Consensus       212 ~~G~---~-~s~~~~L~V~~~~~~  231 (238)
                      ..+.   . ...-..|.|.+....
T Consensus       231 ~~~~~~~~~fg~GT~l~v~~~~~~  254 (259)
T 3omz_A          231 SLTRADKLIFGKGTRVTVEPRSQH  254 (259)
T ss_dssp             CSSTTCCCEECCCEEEEEEC----
T ss_pred             ccCCCCceEECCCCEEEEeeCccc
Confidence            3211   0 111336777665543

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.19  E-value=5.7e-11  Score=93.47  Aligned_cols=130  Identities=13%  Similarity=0.188  Sum_probs=73.6

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecce-ecCCccCCEEEe-CCCceEEeCCCcEEEEEEEee-
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGV-HGDGYRVPRITE-HPASAVVPRHEPTTLNCKADG-  157 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~-~~~v~~~P~i~~-~~~~~~~~~G~~~~L~C~~~g-  157 (238)
                      ..|.|.++..+|+|.|.|..........   ...  ....+... ......+|.+.. .+....+.+|+.+.|.|.+.| 
T Consensus        75 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~---~~~--~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~  149 (240)
T 3q5y_A           75 SEMNMSALELEDSAMYFCASSLRWGDEQ---YFG--PGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGF  149 (240)
T ss_dssp             EEEEECSCCGGGCEEEEEEEESSTTBCC---EEC--CCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEE
T ss_pred             EEEEECcCChhHCEEEEEEEccCCCcce---EEc--CCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeE
Confidence            3577778888888888876641100000   000  01111100 001225666654 345555667999999999988 


Q ss_pred             eCCC-EEEEEeCCEEeeccCCc--cEEEecCCcEEEE--EeecCCCCCC-CeEEEEEEEeCCCc
Q psy18191        158 YPEP-RIEWYKDGSLVSAEIGS--HRILLPAGSLFFL--SLVHGKKDTD-SGVYWCVARNELGF  215 (238)
Q Consensus       158 ~P~p-~i~W~~~g~~l~~~~~~--~~~~~~~~~l~~~--~vi~~v~~~d-~G~Y~C~a~N~~G~  215 (238)
                      .|.| .+.|+++|..+......  ......++...+.  +.|..+...| .|.|+|.|.|....
T Consensus       150 ~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~  213 (240)
T 3q5y_A          150 FPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS  213 (240)
T ss_dssp             BSSCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             ECCCeEEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            5656 79999999988642100  0112234443321  2244446677 67999999997654

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.17  E-value=4.5e-10  Score=97.30  Aligned_cols=92  Identities=16%  Similarity=0.146  Sum_probs=56.2

Q ss_pred             cCCEE-EeCCCceEEeCCCcEEEEEEEeeeCC---CEEEEEeCCEEeeccCCccEEEecCCcE--EEEEeecCCCCCCCe
Q psy18191        130 RVPRI-TEHPASAVVPRHEPTTLNCKADGYPE---PRIEWYKDGSLVSAEIGSHRILLPAGSL--FFLSLVHGKKDTDSG  203 (238)
Q Consensus       130 ~~P~i-~~~~~~~~~~~G~~~~L~C~~~g~P~---p~i~W~~~g~~l~~~~~~~~~~~~~~~l--~~~~vi~~v~~~d~G  203 (238)
                      .+|.+ ...|....+.+|+++.|.|.+.|.++   +.+.|  ++..+............+|..  ...+.|..+..+|.|
T Consensus       245 ~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G  322 (475)
T 1iga_A          245 CHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGK  322 (475)
T ss_pred             CCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccCC
Confidence            35655 33344444689999999999998754   68999  444333210111111112221  112236667999999


Q ss_pred             EEEEEEEeCCCceeEEEEEEE
Q psy18191        204 VYWCVARNELGFARSKNATLD  224 (238)
Q Consensus       204 ~Y~C~a~N~~G~~~s~~~~L~  224 (238)
                      .|+|.|.|..|... ....|.
T Consensus       323 ~Y~C~a~n~~~~~~-~~~~v~  342 (475)
T 1iga_A          323 TFTCTAAYPESKTP-LTATLS  342 (475)
T ss_pred             cEEEEEEcCCCCCc-eEEEee
Confidence            99999999999864 244553

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.17  E-value=2.5e-10  Score=96.30  Aligned_cols=142  Identities=13%  Similarity=0.094  Sum_probs=84.1

Q ss_pred             cEEEecccccccc----------ce----EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCcc
Q psy18191         65 ICLRFQDLLPQSK----------QG----LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYR  130 (238)
Q Consensus        65 ~~~w~~~~~~~~~----------~g----~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~  130 (238)
                      .+.||+++..+..          .+    ...|.+..+..+|+|.|+|.+.+......        ....+. ....+..
T Consensus       203 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~~--------~~~~v~-~~~~~~~  273 (376)
T 2aty_A          203 QFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAP--------IEKTIS-KTKGRPK  273 (376)
T ss_pred             EEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCCc--------eEEEEc-CCCCCCc
Confidence            5899998753211          01    12456666667777788766655321000        000111 1113557


Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeC--CCEEEEEeCCEEeeccCCccEEEecCCcEEEEEe--ecCCCCCCCeEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYP--EPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSL--VHGKKDTDSGVYW  206 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~v--i~~v~~~d~G~Y~  206 (238)
                      +|.+...+.......|+.+.|.|.+.|.+  .+.|+|+++|..+............+++..+...  |......|.|.|+
T Consensus       274 ~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~Yt  353 (376)
T 2aty_A          274 APQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFT  353 (376)
T ss_pred             CCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEE
Confidence            88888776655555689999999999863  4589999999887532111112234555443322  3333455789999


Q ss_pred             EEEEeCCCc
Q psy18191        207 CVARNELGF  215 (238)
Q Consensus       207 C~a~N~~G~  215 (238)
                      |.|.|..-.
T Consensus       354 C~v~h~~l~  362 (376)
T 2aty_A          354 CSVLHEGLH  362 (376)
T ss_pred             EEEEeCCCC
Confidence            999997643

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.17  E-value=8.9e-11  Score=90.03  Aligned_cols=99  Identities=17%  Similarity=0.129  Sum_probs=64.8

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      ...+|.|...|. ..+.+|++++|.|.+.+ |.+.+.|+|+|..+..........  .........|..++.+|+|.|+|
T Consensus         5 ~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~--~~~~~~~l~I~~v~~~D~G~Y~C   80 (201)
T 1nkr_A            5 VHRKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHH--DGVSKANFSISRMTQDLAGTYRC   80 (201)
T ss_dssp             --CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEE--TTEEEEEEEESSCCGGGCEEEEE
T ss_pred             cCCCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecC--CCCceEEEEeccCCcccCeEEEE
Confidence            346788887775 77899999999999974 788999999987654210000011  11111112377889999999999


Q ss_pred             EEEeCC----CceeEEEEEEEEccCCC
Q psy18191        208 VARNEL----GFARSKNATLDVAGKIS  230 (238)
Q Consensus       208 ~a~N~~----G~~~s~~~~L~V~~~~~  230 (238)
                      .|.|..    +...+..+.|.|.+.+.
T Consensus        81 ~a~~~~~~~~~~~~s~~~~l~V~~~~~  107 (201)
T 1nkr_A           81 YGSVTHSPYQVSAPSDPLDIVIIGLYE  107 (201)
T ss_dssp             EEEBTTBTTCCCCCCCCEEEEEECSSC
T ss_pred             eEecCCCCccccCCCCCEEEEeeccCC
Confidence            998753    12223467888876543

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.17  E-value=1.4e-10  Score=89.86  Aligned_cols=127  Identities=15%  Similarity=0.226  Sum_probs=72.8

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee-CC
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY-PE  160 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~  160 (238)
                      .|.|.++..+|+|.|.|...+..  |..  .. ......+. +......+|.+...+....+..|+.+.|.|.+.|. |.
T Consensus        79 ~L~I~~v~~~D~G~Y~C~~~~~~--~~~--~~-~~~~~~L~-V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~  152 (215)
T 1c5d_H           79 FLKMNSLQTEDTAIYFCTREDGW--NYF--DY-WGPGTMVT-VSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPE  152 (215)
T ss_dssp             EEEESSCCGGGCEEEEEEECCSS--SCS--CC-BCCCEEEE-ECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSS
T ss_pred             EEEECCCCcccCEEEEEEEecCC--ccc--ce-EcCCEEEE-ecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcC
Confidence            67777888888888887665531  100  00 00011111 11112245666543322335789999999999987 88


Q ss_pred             C-EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        161 P-RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       161 p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      | .+.|++++..+....... .. .++...+...+......| |.|+|.|.|..|...
T Consensus       153 p~~v~W~~~g~~~~~~~~~~-~~-~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~  207 (215)
T 1c5d_H          153 PVTVTWNSGALSSDVHTFPA-VL-QSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTK  207 (215)
T ss_dssp             CCEEEEGGGTTCCSCCBCCC-EE-ETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEE
T ss_pred             CcEEEEccCCccCceEecCc-cc-CCCCEEEEEEEecccCCC-CeEEEEEEeCCCCcc
Confidence            8 999999986543211111 11 235444433333223356 999999999998763

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=99.16  E-value=7e-11  Score=81.89  Aligned_cols=90  Identities=23%  Similarity=0.424  Sum_probs=61.5

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC-----EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCe
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEP-----RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSG  203 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p-----~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G  203 (238)
                      ..+|.+...|.. .+.+|+.++|.|.+.+.|.+     .+.|+|+|..+..       ......+.    |..++.+|+|
T Consensus         6 ~~kP~l~~~p~~-~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~-------~~~~~~l~----i~~v~~~dsG   73 (108)
T 4hwn_A            6 FPAPILRAVPSA-EPQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQS-------RGLSSEFQ----IPTASEDHSG   73 (108)
T ss_dssp             CCCCEEEEESCS-SCBTTCCEEEEEEC---------CCEEEEEETTEEEEE-------EESCCEEE----ESSCCGGGCE
T ss_pred             CCCCEEEecCCC-cCCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccC-------CCcccEEE----eCccCcccCe
Confidence            357888776653 47889999999999776654     4999999987752       12234454    5667999999


Q ss_pred             EEEEEEEeCCCc--eeEEEEEEEEccCCC
Q psy18191        204 VYWCVARNELGF--ARSKNATLDVAGKIS  230 (238)
Q Consensus       204 ~Y~C~a~N~~G~--~~s~~~~L~V~~~~~  230 (238)
                      .|.|.|.|..|.  ..|..+.|.|.+...
T Consensus        74 ~Y~C~~~~~~~~~~~~S~~l~L~V~g~~~  102 (108)
T 4hwn_A           74 SYWCEAATEDNQVWKQSPQLEIRVQGASA  102 (108)
T ss_dssp             EEEEEEECTTSSSEEECCCEEECCBC---
T ss_pred             EEEEEEEeCCCceeccCCCEEEEEEecch
Confidence            999999998752  345678888877543

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.16  E-value=5.7e-11  Score=89.05  Aligned_cols=83  Identities=25%  Similarity=0.382  Sum_probs=66.4

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCE-EEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPR-IEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      ..+|.+...|....+.+|+++.|.|.+.+.|.|. +.|++++..+..         ..+.|.    |..++.+|+|.|+|
T Consensus         5 ~~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~---------~~~~L~----i~~~~~~d~G~Y~C   71 (175)
T 1fnl_A            5 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS---------QASSYF----IDAATVNDSGEYRC   71 (175)
T ss_dssp             CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES---------SCSEEE----ESSCCGGGCEEEEE
T ss_pred             CCCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC---------CceEEE----EeCCCcccCEEEEE
Confidence            4678888888888999999999999999998877 889999988763         234444    56679999999999


Q ss_pred             EEEeCCCceeEEEEEEEEcc
Q psy18191        208 VARNELGFARSKNATLDVAG  227 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~~  227 (238)
                      .|.|..++.   .+.|.|..
T Consensus        72 ~~~n~~~s~---~~~l~V~~   88 (175)
T 1fnl_A           72 QTNLSTLSD---PVQLEVHI   88 (175)
T ss_dssp             ECSSSCCCC---CEEEEEEC
T ss_pred             EeeCCcccc---cEEEEEeC
Confidence            999966643   56666653

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.16  E-value=2.8e-10  Score=79.19  Aligned_cols=85  Identities=15%  Similarity=0.149  Sum_probs=60.3

Q ss_pred             ceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEe-----e------------ccCCccEEEecCCcEEEEEeecCCCCCCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLV-----S------------AEIGSHRILLPAGSLFFLSLVHGKKDTDS  202 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l-----~------------~~~~~~~~~~~~~~l~~~~vi~~v~~~d~  202 (238)
                      +..+.+|+++.|.|.....+.+.+.|+|+....     .            ..-.++.....+|+|.    |++++.+|+
T Consensus         9 p~~~~~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ngSL~----I~nvt~~D~   84 (111)
T 2qsq_A            9 PFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLL----IQNIIQNDA   84 (111)
T ss_dssp             SSEEETTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTSCEE----ECSCCGGGC
T ss_pred             cceeccCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCCcEE----EccCcccCC
Confidence            357889999999998544445579999975321     1            0012344456788887    556699999


Q ss_pred             eEEEEEEEeCCCceeEEEEEEEEccC
Q psy18191        203 GVYWCVARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       203 G~Y~C~a~N~~G~~~s~~~~L~V~~~  228 (238)
                      |.|+|.+.|..+......+.|.|..+
T Consensus        85 G~Ytc~v~~~~~~~~~~~~~L~V~~~  110 (111)
T 2qsq_A           85 GFYTLHVIKSDLVNEEATGQFRVYPE  110 (111)
T ss_dssp             EEEEEEEEETTSCCEEEEEEEEEECC
T ss_pred             eEEEEEEEeCCCcEEEEEEEEEEecC
Confidence            99999999998753335889988754

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.16  E-value=4.2e-10  Score=88.36  Aligned_cols=141  Identities=17%  Similarity=0.205  Sum_probs=72.0

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCC-CcEEEEEEEeee-C
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRH-EPTTLNCKADGY-P  159 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G-~~~~L~C~~~g~-P  159 (238)
                      .|.|.++..+|+|.|.|........|.+.-.+.  ....+. +......+|.+........+..| +.+.|.|.+.|. |
T Consensus        79 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~--~~~~L~-V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P  155 (232)
T 1dn0_B           79 SLKLSSVTAADTAVYYCARPPHDTSGHYWNYWG--QGTLVT-VSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLP  155 (232)
T ss_dssp             EEEECSCCGGGCEEEEEEECSSTTSCSCCSEEC--CCEEEE-ECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBS
T ss_pred             EEEECCCCcccCEEEEEEEecCCcCCchhhhcc--cceEEE-EccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeC
Confidence            567777777788887766542100000000000  001111 11111245666532212234578 999999999886 7


Q ss_pred             CC-EEEEEe-CCEEeeccCCccEEEecCCcEEE--EEeecCCCC--CCCeEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191        160 EP-RIEWYK-DGSLVSAEIGSHRILLPAGSLFF--LSLVHGKKD--TDSGVYWCVARNELGFARSKNATLDVAG  227 (238)
Q Consensus       160 ~p-~i~W~~-~g~~l~~~~~~~~~~~~~~~l~~--~~vi~~v~~--~d~G~Y~C~a~N~~G~~~s~~~~L~V~~  227 (238)
                      .| .+.|++ +|..+......... ..++....  ...|..+..  .|.|.|+|.|.|..|... ....+.|..
T Consensus       156 ~p~~v~W~~~~g~~l~~~~~~~~~-~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~-~~~~i~~~~  227 (232)
T 1dn0_B          156 DSITFSWKYKNNSDISSTRGFPSV-LRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKE-KNVPLPVIA  227 (232)
T ss_dssp             SCCEEEEEETTSCEECCEEECCCE-EETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEE-EEEECCC--
T ss_pred             CCeEEEEEcCCCCceeeEEECCcc-ccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcc-eeEecCCCC
Confidence            77 999999 88877530000000 11233222  223555555  689999999999999874 355555443

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.16  E-value=3.7e-12  Score=109.08  Aligned_cols=88  Identities=19%  Similarity=0.295  Sum_probs=55.0

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC--EEEEEeCCEEeeccCCccEEEecCCcEEEEEe--ecCCCCCCCe
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP--RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSL--VHGKKDTDSG  203 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~v--i~~v~~~d~G  203 (238)
                      +..+|.+...+.......|+.+.|.|.+.|.+++  .++|+++|..+............+|.+.+...  |.....+|.|
T Consensus       333 ~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g  412 (434)
T 1igy_B          333 KPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGN  412 (434)
T ss_dssp             CCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTC
T ss_pred             CCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECchhccCCC
Confidence            4567877654433323467789999999996443  89999999887431000001123455443322  3333456799


Q ss_pred             EEEEEEEeCCCc
Q psy18191        204 VYWCVARNELGF  215 (238)
Q Consensus       204 ~Y~C~a~N~~G~  215 (238)
                      .|+|.|.|....
T Consensus       413 ~YtC~a~n~~l~  424 (434)
T 1igy_B          413 TFTCSVLHEGLH  424 (434)
T ss_dssp             CEEEEEEETTSG
T ss_pred             EEEEEEEcCCCC
Confidence            999999998754

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.16  E-value=1.2e-10  Score=94.22  Aligned_cols=148  Identities=14%  Similarity=0.222  Sum_probs=78.4

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCc-ccCCc--eEEeCCCCcceecc--------eecCCccCCEEEeCCCceEEeCCCcE
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTW-QKGLP--LKKYHPPSLPLFPG--------VHGDGYRVPRITEHPASAVVPRHEPT  149 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~-~~G~y--~c~~~~~~~~~~~~--------~~~~v~~~P~i~~~~~~~~~~~G~~~  149 (238)
                      ..|.|.++.++|+|.|.|...+.. ..|.+  .-.......+.+..        ....+..+|.+...+. ..+.+|+++
T Consensus        79 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v  157 (280)
T 3fku_X           79 AYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTA  157 (280)
T ss_dssp             EEEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCE
T ss_pred             EEEEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCE
Confidence            468888999999999997766531 00000  00000000001100        0000122455555555 888999999


Q ss_pred             EEEEEEee-eC-CCEEEEEeC--CEEeec---c-------CCccEEE-ecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        150 TLNCKADG-YP-EPRIEWYKD--GSLVSA---E-------IGSHRIL-LPAGSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       150 ~L~C~~~g-~P-~p~i~W~~~--g~~l~~---~-------~~~~~~~-~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      .|.|.+.+ .+ .+.+.|++.  +..+..   .       ...+... ......  .+.|..++.+|+|.|.|.+.|..+
T Consensus       158 ~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~--~L~I~~v~~~DsG~Y~C~~~~~~~  235 (280)
T 3fku_X          158 TLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTA--SLTITGLQPEDEADYYCSTWDSSL  235 (280)
T ss_dssp             EEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEE--EEEECSCCGGGCSEEEEEEEETTT
T ss_pred             EEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEE--EEEECCCCHHHCEEEEEEEecCCC
Confidence            99999987 44 488999973  222210   0       0111111 122222  223788899999999999999872


Q ss_pred             c--eeEEEEEEEEccCCCC
Q psy18191        215 F--ARSKNATLDVAGKIST  231 (238)
Q Consensus       215 ~--~~s~~~~L~V~~~~~~  231 (238)
                      .  .....+.|.|...+..
T Consensus       236 ~~~~~g~~t~l~V~~~~~~  254 (280)
T 3fku_X          236 SAVVFGGGTKLTVLGQPKA  254 (280)
T ss_dssp             TEEEEBCCCEEEEC-----
T ss_pred             CceEECCCEEEEECCCCCC
Confidence            2  2223457777655433

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.15  E-value=6.9e-11  Score=94.78  Aligned_cols=129  Identities=16%  Similarity=0.210  Sum_probs=73.9

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecce-ecCCccCCEEEe-CCCceEEeCCCcEEEEEEEee-
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGV-HGDGYRVPRITE-HPASAVVPRHEPTTLNCKADG-  157 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~-~~~v~~~P~i~~-~~~~~~~~~G~~~~L~C~~~g-  157 (238)
                      ..|.|.++..+|+|.|.|...+...  .+.-.+...  ..+... ......+|.+.. .+....+..|+.+.|.|.+.| 
T Consensus       101 ~sL~I~~v~~~D~G~Y~C~~~~~~~--~~~~~~~~~--~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~  176 (270)
T 3qib_D          101 CSLEIQSSEAGDSALYLCASSLNWS--QDTQYFGPG--TRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGF  176 (270)
T ss_dssp             EEEEESSCCGGGCEEEEEEEESCTT--CCCCEECCC--EEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEE
T ss_pred             EEEEECCCCHhHCeEEEEEEecCCC--ccceEECCc--EEEEEccccccccCCceEEECCCccccccCCceEEEEEecce
Confidence            4577888888888888876653210  000011000  111100 011223676554 344445566999999999988 


Q ss_pred             eCCC-EEEEEeCCEEeeccCCccEEE---------ecCCcEEEEE--eecCCCCCC-CeEEEEEEEeCCCce
Q psy18191        158 YPEP-RIEWYKDGSLVSAEIGSHRIL---------LPAGSLFFLS--LVHGKKDTD-SGVYWCVARNELGFA  216 (238)
Q Consensus       158 ~P~p-~i~W~~~g~~l~~~~~~~~~~---------~~~~~l~~~~--vi~~v~~~d-~G~Y~C~a~N~~G~~  216 (238)
                      .|.| .+.|+++|..+...   ....         ..++.+.+..  .|.....+| .|.|+|.|.|.....
T Consensus       177 ~P~~~~v~W~k~g~~l~~~---~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~~  245 (270)
T 3qib_D          177 YPDHVELSWWVNGKEVHSG---VCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE  245 (270)
T ss_dssp             BSSCEEEEEEETTEEECTT---EEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBCT
T ss_pred             eCCCeEEEEEECCEECCCC---cccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCCC
Confidence            5667 89999999988642   1110         0234443321  233334555 999999999987654

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.15  E-value=6.9e-11  Score=91.15  Aligned_cols=83  Identities=25%  Similarity=0.392  Sum_probs=66.2

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCE-EEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPR-IEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      .+|.+...|....+.+|+++.|.|.+.+.|.|. +.|+++|..+...         .+.|.    |..++.+|+|.|+|.
T Consensus         6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~---------~~~L~----i~~v~~~D~G~Y~C~   72 (204)
T 3sgj_C            6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ---------ASSYF----IDAATVDDSGEYRCQ   72 (204)
T ss_dssp             CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC---------SSEEE----ESSCCGGGCEEEEEE
T ss_pred             CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC---------ccEEE----EecccccCCEEEEEE
Confidence            567888888878999999999999999998876 9999999887642         14454    666799999999999


Q ss_pred             EEeCCCceeEEEEEEEEccC
Q psy18191        209 ARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~~  228 (238)
                      |.|...+   ..+.|.|...
T Consensus        73 a~n~~~s---~~~~l~V~~~   89 (204)
T 3sgj_C           73 TQLSTLS---DPVQLEVHIG   89 (204)
T ss_dssp             ETTSBCC---CCEEEEEECS
T ss_pred             eCCCccc---ccEEEEEecC
Confidence            9985433   3667777654

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.15  E-value=1e-10  Score=89.46  Aligned_cols=100  Identities=21%  Similarity=0.361  Sum_probs=71.7

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeec---------cCCccEEEecCCcEEEEEeecCCCCC
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA---------EIGSHRILLPAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~---------~~~~~~~~~~~~~l~~~~vi~~v~~~  200 (238)
                      .++.+...+..+.+.+|+++.|.|.+.|.|.|.+.|++++..+..         .....+....++.|.    |..++.+
T Consensus         3 ~~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~----i~~~~~~   78 (209)
T 1nbq_A            3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGIT----FKSVTRE   78 (209)
T ss_dssp             CCCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEE----CSCCCTT
T ss_pred             ceEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEE----EeeCCHH
Confidence            356677778888999999999999999999999999998755311         001112222335554    6677999


Q ss_pred             CCeEEEEEEEeCCCce-eEEEEEEEEccCCCCCC
Q psy18191        201 DSGVYWCVARNELGFA-RSKNATLDVAGKISTAT  233 (238)
Q Consensus       201 d~G~Y~C~a~N~~G~~-~s~~~~L~V~~~~~~~~  233 (238)
                      |+|.|+|.|.|..|.. .+..+.|.|..++..+.
T Consensus        79 d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~  112 (209)
T 1nbq_A           79 DTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPT  112 (209)
T ss_dssp             SCSEEEEEEEETTSSCEECCEEECCEEBCCCCCC
T ss_pred             HCcEEEEEEecCCCCccceEEEEEEEecCCcCCC
Confidence            9999999999987632 22477888877766543

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.15  E-value=4.4e-10  Score=87.26  Aligned_cols=127  Identities=12%  Similarity=0.127  Sum_probs=74.5

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEE-eCCCceEEeCCCcEEEEEEEee-eC
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRIT-EHPASAVVPRHEPTTLNCKADG-YP  159 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~-~~~~~~~~~~G~~~~L~C~~~g-~P  159 (238)
                      .|.|.++..+|+|.|.|...+... +.+   +  .....+. +......+|.+. ..+...  .+|+.+.|.|.+.| .|
T Consensus        82 sL~I~~v~~~DsG~Y~C~~~~~~~-~~~---~--~~~~~l~-V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P  152 (221)
T 3m8o_H           82 FLQMNSLKSDDTAMYYCVIRGDVY-NRQ---W--GQGTLVT-VSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFP  152 (221)
T ss_dssp             EEEECSCCGGGCEEEEEEEESCTT-CCC---B--BCCEEEE-ECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBS
T ss_pred             EEEECCCCHHHCEEEEEEEECCCh-hhe---E--CCCEEEE-EecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeEC
Confidence            477788888888888876554210 000   0  0001111 111133566665 333333  78999999999988 67


Q ss_pred             C-C-EEEEEeCCEEeeccCCccEEEecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        160 E-P-RIEWYKDGSLVSAEIGSHRILLPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       160 ~-p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      . | .+.|+++|..+............++...+  ...|..+...|.|.|+|.|.|..+...
T Consensus       153 ~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~~  214 (221)
T 3m8o_H          153 QEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQ  214 (221)
T ss_dssp             SCSEEEEESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCCE
T ss_pred             CCCEEEEEEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCce
Confidence            6 4 89999998766421111111012333322  122556678899999999999987763

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.14  E-value=1.4e-10  Score=93.47  Aligned_cols=142  Identities=10%  Similarity=-0.013  Sum_probs=83.5

Q ss_pred             EEEecccccccc------ce--EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeC
Q psy18191         66 CLRFQDLLPQSK------QG--LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEH  137 (238)
Q Consensus        66 ~~w~~~~~~~~~------~g--~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~  137 (238)
                      +.|++++..+..      .+  ...|.+..+..+|+|.|+|.+.+..  |..   ..  ....+. +.......|.+...
T Consensus        28 v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~--g~~---~~--~~~~~~-v~v~~p~~~~~~~~   99 (289)
T 3mjg_X           28 VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSR--GLE---TD--ERKRLY-IFVPDPTVGFLPND   99 (289)
T ss_dssp             CEEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC-----------C--CCEEEE-EECCCTTCCBCCCC
T ss_pred             EEEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccC--CCC---cC--cEEeEE-EEEECCCcCcccCC
Confidence            899999875421      12  2568888999999999998877643  210   00  000111 11100111222111


Q ss_pred             CC--ceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCc
Q psy18191        138 PA--SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGF  215 (238)
Q Consensus       138 ~~--~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~  215 (238)
                      +.  ...+.+|+.+.|.|.+. .|.|.+.|++++......   ....  .... +  +    ...|+|.|+|.|.|..+.
T Consensus       100 ~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~---~~~~--~~~~-~--~----~~~d~G~Y~C~a~n~~~~  166 (289)
T 3mjg_X          100 AEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALP---VPYD--HQRG-F--S----GIFEDRSYICKTTIGDRE  166 (289)
T ss_dssp             HHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCC---CCEE--TTTE-E--E----ECCCSSEEEEEEEETTEE
T ss_pred             CCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccc---eeec--CCcC-e--e----eeccCcEEEEEEEeCCce
Confidence            11  16789999999999998 788999999875222110   0111  1111 1  1    357999999999998887


Q ss_pred             eeEEEEEEEEccC
Q psy18191        216 ARSKNATLDVAGK  228 (238)
Q Consensus       216 ~~s~~~~L~V~~~  228 (238)
                      ..+..+.|.|...
T Consensus       167 ~~s~~~~l~v~~~  179 (289)
T 3mjg_X          167 VDSDAYYVYRLQV  179 (289)
T ss_dssp             EECCCEEEEECCC
T ss_pred             eeeeeEEEEecCC
Confidence            7655677877663

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.14  E-value=5.3e-12  Score=105.14  Aligned_cols=115  Identities=18%  Similarity=0.163  Sum_probs=82.3

Q ss_pred             cCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecC
Q psy18191        106 KGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPA  185 (238)
Q Consensus       106 ~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~  185 (238)
                      .|.|.|.... ..   ..+...+..+|.|...+....+.+|+++.|.|.+.|.|.|.+.|++++..+.... ........
T Consensus       137 ~~~~~C~~~~-~l---~~l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~  211 (347)
T 2ifg_A          137 EQKLQCHGQG-PL---AHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATV-MKSGGLPS  211 (347)
T ss_dssp             GGCCCCSSSS-CS---SCCCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEE-CCCCCSSE
T ss_pred             ccCCCCCCCh-HH---hcCCcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccc-ccceeccc
Confidence            4667775544 11   1112235678999988888999999999999999999999999999986544220 00011122


Q ss_pred             CcEEEEEeecCCCCCCCe-EEEEEEEeCCCceeEEEEEEEEccCCC
Q psy18191        186 GSLFFLSLVHGKKDTDSG-VYWCVARNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       186 ~~l~~~~vi~~v~~~d~G-~Y~C~a~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      +.|.    |..+..+|+| .|+|.|.|..|... ..+.|.|..+|.
T Consensus       212 ~~L~----i~~v~~~D~G~~Y~C~a~n~~g~~~-~~~~l~V~~~P~  252 (347)
T 2ifg_A          212 LGLT----LANVTSDLNRKNVTCWAENDVGRAE-VSVQVNVSFPAS  252 (347)
T ss_dssp             EEEE----EESCCSTTTTCCEEECCEETTEECC-EEECCCCBEEEE
T ss_pred             ceEE----EeeCChHHCCCeEEEEEEcCCCCEE-EEEEEEEcCCCe
Confidence            3344    5666999999 99999999999985 588888766554

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.14  E-value=8.6e-11  Score=91.77  Aligned_cols=131  Identities=14%  Similarity=0.183  Sum_probs=72.5

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcc-cCCceEEeCCCCcceecceecCCccCCEEEe-CCCceEEeCCCcEEEEEEEeee
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQ-KGLPLKKYHPPSLPLFPGVHGDGYRVPRITE-HPASAVVPRHEPTTLNCKADGY  158 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~-~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~-~~~~~~~~~G~~~~L~C~~~g~  158 (238)
                      ..|.|.++..+|+|.|.|...+... .+.+...... ....+. +......+|.+.. .+.. .+.+|+.+.|.|.+.|.
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~-~~~~L~-V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~  155 (225)
T 1op3_H           79 VYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWG-PGTVVT-VSPASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDY  155 (225)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEEC-CCEEEE-EESCSCBCCEEEEECCCT-TCCCCCEEEEEEEEEEE
T ss_pred             EEEEECCCChhhCEEEEEEEecCCCccccccceeec-CCEEEe-cccCCCcCCeEEEecccc-cccCCCcEEEEEEEEeE
Confidence            3577778888888888876655210 0000000000 011111 1111123566644 3332 34689999999999987


Q ss_pred             -CCC-EEEEEeCCEEeeccCCccEEEecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        159 -PEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       159 -P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                       |.| .+.|++++..+....... ....++...+  ...|..+...| |.|+|.|.|..+..
T Consensus       156 ~P~p~~v~W~~~~~~~~~~~~~~-~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~  215 (225)
T 1op3_H          156 FPEPVTVSWNSGALTSGVHTFPA-VLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  215 (225)
T ss_dssp             BSSCCEEECCTTSCCTTCEECCC-EECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTE
T ss_pred             ECCCeEEEEecCCCcCCeEecCc-eeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCc
Confidence             777 999999986532110111 1123443322  22355556678 99999999977654

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.13  E-value=7.2e-10  Score=76.49  Aligned_cols=92  Identities=23%  Similarity=0.383  Sum_probs=58.4

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC--E---Eeecc-------CCccEEEecCCcEEEEEeecCCCCCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG--S---LVSAE-------IGSHRILLPAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g--~---~l~~~-------~~~~~~~~~~~~l~~~~vi~~v~~~d  201 (238)
                      +...|..+.+.+|+++.|.|.+.+.|.|.+.|+++.  .   .+...       ...+......+.. ..+.|..+..+|
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~-~~L~I~~v~~~D   82 (108)
T 1jhl_L            4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTD-FTLTISSLEPED   82 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSE-EEEEECSCCTTC
T ss_pred             eeccCCeeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCE-EEEEECCCCHHH
Confidence            444566788999999999999999999999999853  1   12110       0112111111111 123378889999


Q ss_pred             CeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191        202 SGVYWCVARNELGFARSKNATLDVA  226 (238)
Q Consensus       202 ~G~Y~C~a~N~~G~~~s~~~~L~V~  226 (238)
                      +|.|.|.|.|........-..|.|.
T Consensus        83 sG~Y~C~~~n~~~~~fg~gt~L~V~  107 (108)
T 1jhl_L           83 FAMYICQQHNEYPWTFGGGTKLEIK  107 (108)
T ss_dssp             CSEEEEEECSSSSCEECCCEEEEEC
T ss_pred             CEEEEEEEccCCccEECCCEEEEEE
Confidence            9999999999743222224456653

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.13  E-value=4.2e-10  Score=86.61  Aligned_cols=94  Identities=17%  Similarity=0.281  Sum_probs=62.9

Q ss_pred             CEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC---E--Eeecc-------CCccEEEe-cCCcEEEEEeecCCC
Q psy18191        132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG---S--LVSAE-------IGSHRILL-PAGSLFFLSLVHGKK  198 (238)
Q Consensus       132 P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g---~--~l~~~-------~~~~~~~~-~~~~l~~~~vi~~v~  198 (238)
                      |.+...|..+.+.+|+++.|.|.+.+.|.+.+.|+++.   .  .+...       ...+.... ..+...  +.|..++
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--L~I~~v~   79 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSS--FTISSLE   79 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEE--EEESSCC
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEE--EEECCCC
Confidence            45666677889999999999999999999999999832   1  11110       01111111 122222  2378889


Q ss_pred             CCCCeEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191        199 DTDSGVYWCVARNELGFARSKNATLDVAG  227 (238)
Q Consensus       199 ~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~  227 (238)
                      .+|+|.|.|.|.|..+......+.|.|..
T Consensus        80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  108 (213)
T 3r06_A           80 SEDIGSYYCQQYYNYPWTFGPGTKLEIKR  108 (213)
T ss_dssp             GGGCSEEEEEECSSSSCEECCCEEEEECC
T ss_pred             cccCEEEEEecccCCceEEcCCceEEEec
Confidence            99999999999998765433456777743

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.13  E-value=1.1e-10  Score=91.24  Aligned_cols=130  Identities=12%  Similarity=0.181  Sum_probs=72.0

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccC----CceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEe
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKG----LPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKAD  156 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G----~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~  156 (238)
                      ..|.|.++..+|+|.|.|...+..  |    .+...... ....+. +......+|.+...+....+.+|+.+.|.|.+.
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~~~--g~~~~~~~~~~~~-~~~~L~-V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~  155 (228)
T 3bae_H           80 VFMKITSVDTADTATYYCARRGFY--GRKYEVNHFDYWG-QGTTLT-VSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVK  155 (228)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEES--TTCTTSEEEEEEC-CCEEEE-ECSCCCBCCEEEEECC-----CCSEEEEEEEEE
T ss_pred             EEEEEcCCCcccCEEEEEEEecCC--CccccccceeeeC-CcEEEE-ecCCCCCCCEEEEecccccccCCCCEEEEEEEc
Confidence            467788888888888887665421  1    00000000 011111 111122467766543334467899999999999


Q ss_pred             ee-CCC-EEEEEeCCEEeeccCCccEEEecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        157 GY-PEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       157 g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      |. |.| .+.|++++..+... ...... ..+...+  ...|..+...| |.|+|.|.|..|...
T Consensus       156 g~~P~p~~v~W~~~~~~~~~~-~~~~~~-~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~  217 (228)
T 3bae_H          156 GYFPEPVTLTWNSGSLSSGVH-TFPAVL-QSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTK  217 (228)
T ss_dssp             EEBSSCCEEEEGGGTCCTTEE-EEEEEE-ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred             cEeCCCEEEEEeeCCcccCce-EcCcee-CCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCC
Confidence            87 878 99999988653211 011111 2232222  22355556655 999999999998764

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.12  E-value=1.6e-10  Score=99.48  Aligned_cols=138  Identities=11%  Similarity=0.114  Sum_probs=79.3

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCccc-----CCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEe
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQK-----GLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKAD  156 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~-----G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~  156 (238)
                      .|.|.++..+|+|.|+|.+.+....     +.+... .......+. +......+|.+...+....+.+|+.+.|.|.+.
T Consensus        80 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~-~~~~~~~l~-V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~  157 (457)
T 1hzh_H           80 YMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMD-VWGKGTTVI-VSSASTKGPSVFPLAPSSKSTSGGTAALGCLVK  157 (457)
T ss_dssp             EEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCC-BCCCCEEEE-ECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEE
T ss_pred             EEEECCCCcccCEEEEEEEecCCccccccccccccc-eECCcEEEE-ecCCCCCCCeEEecCccccccCCCcEEEEEEEe
Confidence            5778888888888888776653110     000000 000111111 111122367665544444568999999999998


Q ss_pred             ee-CC-CEEEEEeCCEEeeccCCccEEEecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEE
Q psy18191        157 GY-PE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGFARSKNATLD  224 (238)
Q Consensus       157 g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~  224 (238)
                      |. |. |.+.|++++..+... ........++....  .+.|..+..+| |.|+|.|.|..|... ....|.
T Consensus       158 g~~P~~~~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~-~~~~v~  226 (457)
T 1hzh_H          158 DYFPEPVTVSWNSGALTSGVH-TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK-VDKKAE  226 (457)
T ss_dssp             SBBSCCCEEEETTTTBCTTEE-EEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEE-EEEECC
T ss_pred             EEeCCCeEEEEEeCCEeccce-EcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcc-eeEEec
Confidence            87 64 899999998654311 01112223343221  22366778889 999999999887764 244444

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.11  E-value=3.7e-10  Score=86.90  Aligned_cols=93  Identities=18%  Similarity=0.338  Sum_probs=62.9

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC--EEe----------eccCCccEEEe-cCCcEEEEEeecCCCCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG--SLV----------SAEIGSHRILL-PAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g--~~l----------~~~~~~~~~~~-~~~~l~~~~vi~~v~~~  200 (238)
                      +...|..+.+.+|+++.|.|.+.|.|.|.+.|++++  ..+          ......+.... ..+...  +.|..++.+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--L~I~~v~~~   81 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFT--LSINSVETE   81 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEE--EEESSCCGG
T ss_pred             EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEE--EEECCCChh
Confidence            444567788999999999999999999999999843  211          00001122111 222222  237888999


Q ss_pred             CCeEEEEEEEeCCCceeEEEEEEEEccC
Q psy18191        201 DSGVYWCVARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       201 d~G~Y~C~a~N~~G~~~s~~~~L~V~~~  228 (238)
                      |+|.|.|.|.|..|...+..+.|.|...
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~  109 (213)
T 3d9a_L           82 DFGMYFCQQSNSWPYTFGGGTKLEIKRA  109 (213)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEECCC
T ss_pred             hCEEEEEeeecCCcceeCCCEEEEEecC
Confidence            9999999999998875433557777653

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.10  E-value=2.6e-10  Score=84.62  Aligned_cols=83  Identities=20%  Similarity=0.378  Sum_probs=64.2

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeC-CCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYP-EPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P-~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      .+|.+...|....+.+|+.+.|.|.+.+.| .+.+.|+++|..+...         .+.+.+..+    +.+|+|.|+|.
T Consensus         3 p~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~---------~~~~~~~~~----~~~d~G~Y~C~   69 (170)
T 3ry4_A            3 PKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH---------TQPSYRFKA----NNNDSGEYTCQ   69 (170)
T ss_dssp             CBCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC---------CSSEEEEEC----CGGGCEEEEEE
T ss_pred             CCCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC---------ccceEEEec----ccccCeEEEEE
Confidence            357777778888899999999999999987 6799999999887642         334444444    99999999999


Q ss_pred             EEeCCCceeEEEEEEEEccC
Q psy18191        209 ARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~~  228 (238)
                      |.|..++.   .+.|.|..+
T Consensus        70 ~~~~~~s~---~~~l~v~~~   86 (170)
T 3ry4_A           70 TGQTSLSD---PVHLTVLFE   86 (170)
T ss_dssp             ETTSBCCC---CEEEEEECC
T ss_pred             EeCCCceE---eEEEEEECC
Confidence            99865544   556666553

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.10  E-value=9.1e-10  Score=88.20  Aligned_cols=76  Identities=12%  Similarity=0.302  Sum_probs=48.8

Q ss_pred             CCCceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEEee---c--------------cCCccEEEec-CCcEEEEEee
Q psy18191        137 HPASAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSLVS---A--------------EIGSHRILLP-AGSLFFLSLV  194 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~l~---~--------------~~~~~~~~~~-~~~l~~~~vi  194 (238)
                      .+....+.+|+++.|.|.+.|.|.  +.+.|+++  +..+.   .              ....+..... .......+.|
T Consensus       157 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I  236 (268)
T 1x9q_A          157 ETGGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQM  236 (268)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred             CCCceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEE
Confidence            345678999999999999988764  89999985  22221   0              0011111111 1100112337


Q ss_pred             cCCCCCCCeEEEEEEEeC
Q psy18191        195 HGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       195 ~~v~~~d~G~Y~C~a~N~  212 (238)
                      ..++.+|+|.|.|.|.|.
T Consensus       237 ~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          237 NNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCCHHHCEEEEEEEccC
Confidence            888999999999999985

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.10  E-value=4.5e-11  Score=89.64  Aligned_cols=81  Identities=26%  Similarity=0.435  Sum_probs=61.9

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC-EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      .+|.+...|....+.+|+++.|.|.+.+.|.| .+.|++++..+...         ++.|.    |..++.+|+|.|+|.
T Consensus         3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~---------~~~L~----i~~v~~~d~G~Y~C~   69 (176)
T 1f2q_A            3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET---------NSSLN----IVNAKFEDSGEYKCQ   69 (176)
T ss_dssp             -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC---------SSEEE----ECSCCGGGCEEEEEE
T ss_pred             CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC---------ceEEE----EeccceecCEEEEEE
Confidence            57888888888899999999999999998886 69999999877631         34454    566699999999999


Q ss_pred             EEeCCCceeEEEEEEEEc
Q psy18191        209 ARNELGFARSKNATLDVA  226 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~  226 (238)
                      |.|..++.   .+.|.|.
T Consensus        70 ~~~~~~s~---~~~l~V~   84 (176)
T 1f2q_A           70 HQQVNESE---PVYLEVF   84 (176)
T ss_dssp             CTTSSCCC---CEEEEEE
T ss_pred             cCCccccc---cEEEEEe
Confidence            99977654   4556665

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.08  E-value=9.9e-10  Score=97.35  Aligned_cols=145  Identities=14%  Similarity=0.110  Sum_probs=84.5

Q ss_pred             CCCccEEEecccccccc------------ce---E---EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceec
Q psy18191         61 YPKPICLRFQDLLPQSK------------QG---L---MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFP  122 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~------------~g---~---~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~  122 (238)
                      .+.+.+.||+++.....            .+   +   ..|.+.+++.+|+|.|+|...+..  |.....     ...+.
T Consensus       394 ~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~--~~~~~~-----~~~l~  466 (581)
T 3o3u_N          394 KPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRN--GKETKS-----NYRVR  466 (581)
T ss_dssp             SSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEECTT--SCEEEE-----EEEEE
T ss_pred             CCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEcCC--CceeEE-----EEEEE
Confidence            56778999998652100            11   0   147778888888888887766532  211000     00111


Q ss_pred             ceecCCccCCEEEeCCCceEEeCCCcE-EEEEEEee-eCCCEEEEEeCCEEeeccCCccEEE----e--cCCcEEE--EE
Q psy18191        123 GVHGDGYRVPRITEHPASAVVPRHEPT-TLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRIL----L--PAGSLFF--LS  192 (238)
Q Consensus       123 ~~~~~v~~~P~i~~~~~~~~~~~G~~~-~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~----~--~~~~l~~--~~  192 (238)
                       +.. ...+|.+...  ...+..|+.. .|.|.+.| .|.|.++|+++|..+........+.    .  ..|....  .+
T Consensus       467 -V~~-~~~~p~i~~~--~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~y~~~s~L  542 (581)
T 3o3u_N          467 -VYQ-IPGKPEIVDS--ASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQSEL  542 (581)
T ss_dssp             -EEB-CCCCCEEESC--CSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECTTTCCEEEEEEE
T ss_pred             -EEc-CCCCCEEEcC--CcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCCCceEEEEEEE
Confidence             111 1234555443  2335566555 56999988 5999999999999987542222111    1  3343332  23


Q ss_pred             eecCCCCCC-CeEEEEEEEeCCCce
Q psy18191        193 LVHGKKDTD-SGVYWCVARNELGFA  216 (238)
Q Consensus       193 vi~~v~~~d-~G~Y~C~a~N~~G~~  216 (238)
                      .|..+..+| .|.|+|.|.|..+..
T Consensus       543 ~i~~~~~~d~~~~y~C~~~n~~~~~  567 (581)
T 3o3u_N          543 MVTPARGGDPRPTFSCSFSPGLPRH  567 (581)
T ss_dssp             EECCCTTSCSCCCEEEEEECSSCSS
T ss_pred             EEEeccccCCCceEEEEEeccCCCC
Confidence            356666445 789999999997544

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=99.08  E-value=6e-10  Score=80.11  Aligned_cols=96  Identities=19%  Similarity=0.362  Sum_probs=60.4

Q ss_pred             EEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEE---eeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSL---VSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       133 ~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~---l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      .+...|..+.+.+|+++.|.|.+.+.  +.+.|+++  +..   +... ..+.....++.. ..+.|..++.+|+|.|.|
T Consensus        19 ~v~q~p~~~~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~~-~~r~~~~~~~~~-~~L~I~~~~~~DsG~Y~C   94 (133)
T 3khq_A           19 QIWQHPRFAAKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVSE-EGRIVQTQNGSV-YTLTIQNIQYEDNGIYFC   94 (133)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECCCT-TTTEEEEEETTE-EEEEECSCCGGGCEEEEE
T ss_pred             ceEEcCceEEEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEEe-CCCEEEEcCCCE-EEEEECCCChHHCEEEEE
Confidence            45666778899999999999999887  89999987  322   2111 222222222322 222378889999999999


Q ss_pred             EEEeCCCce---eEEEEEEEEccCCCCC
Q psy18191        208 VARNELGFA---RSKNATLDVAGKISTA  232 (238)
Q Consensus       208 ~a~N~~G~~---~s~~~~L~V~~~~~~~  232 (238)
                      .|.|..|..   ....+.|.|.+.+.+.
T Consensus        95 ~a~n~~g~~~~~~g~gt~L~V~~~p~~~  122 (133)
T 3khq_A           95 KQKCDSANHNVTDSCGTELLVLGFSTLD  122 (133)
T ss_dssp             EESSCC-------CCCEEEEEC------
T ss_pred             EEEeCCCCcceeECCCEEEEEEecccch
Confidence            999987631   1235788888765443

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.08  E-value=7.1e-10  Score=85.34  Aligned_cols=92  Identities=20%  Similarity=0.385  Sum_probs=61.4

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEE---eecc-------CCccEE-EecCCcEEEEEeecCCCCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSL---VSAE-------IGSHRI-LLPAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~---l~~~-------~~~~~~-~~~~~~l~~~~vi~~v~~~  200 (238)
                      +...+ .+.+.+|+++.|.|.+.|.|.+.+.|++.  +..   +...       ...+.. ....+...+  .|..++.+
T Consensus         4 v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L--~I~~v~~~   80 (213)
T 3mj8_L            4 LTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATL--TISKAQAG   80 (213)
T ss_dssp             BBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEE--EESSCCGG
T ss_pred             EEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEE--EECCCChh
Confidence            34445 67889999999999999999999999982  211   1110       011111 112222222  37888999


Q ss_pred             CCeEEEEEEEeCCC--ceeEEEEEEEEccC
Q psy18191        201 DSGVYWCVARNELG--FARSKNATLDVAGK  228 (238)
Q Consensus       201 d~G~Y~C~a~N~~G--~~~s~~~~L~V~~~  228 (238)
                      |+|.|.|.|.|..|  ......+.|.|...
T Consensus        81 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~  110 (213)
T 3mj8_L           81 DEADYYCQSWDGTNSAWVFGSGTKVTVLGQ  110 (213)
T ss_dssp             GCEEEEEEEEETTTTEEEEBCCEEEEEECS
T ss_pred             hCEEEEEEeccCCcceeEEcCceEEEEeCC
Confidence            99999999999998  23234678888743

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.08  E-value=2.2e-10  Score=98.06  Aligned_cols=123  Identities=13%  Similarity=0.125  Sum_probs=71.4

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee-CC
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY-PE  160 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~  160 (238)
                      .|.|.++..+|+|.|.|.+.+..  +.+      .....+. +......+|.+...+....+.+|+.+.|.|.+.|. |.
T Consensus        79 ~L~I~~v~~~D~G~Y~C~~~~~~--~~~------~~~~~l~-V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~  149 (434)
T 1igy_B           79 NIHLSSLTSDDSAVYYCVREGEV--PYW------GQGTTVT-VSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPE  149 (434)
T ss_dssp             CEEECSBCGGGCSEECCCCSSSS--CCC------CCCEECE-ECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSS
T ss_pred             EEEECCCChHHCEEEEEEEEccc--ccc------CCceEEE-EccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCC
Confidence            46677777888888886555421  100      0011111 11111235655433323345789999999999987 77


Q ss_pred             C-EEEEEeCCEEeeccCCccEEEecCCcEE--EEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        161 P-RIEWYKDGSLVSAEIGSHRILLPAGSLF--FLSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       161 p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~--~~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      | .+.|++++..+....... . ...+...  ..+.|..+..+| |.|+|.|.|..|..
T Consensus       150 p~~v~W~k~~~~~~~~~~~~-~-~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~  205 (434)
T 1igy_B          150 PVTVTWNSGSLSSGVHTFPA-V-LQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASST  205 (434)
T ss_dssp             CCEEEETTTTBCSSEEECCC-E-ECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTC
T ss_pred             CeEEEEeeCCcCCCeEecCc-e-ecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCc
Confidence            7 999999987532110000 1 1112222  122356678788 99999999999985

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.07  E-value=6.3e-10  Score=87.52  Aligned_cols=92  Identities=22%  Similarity=0.252  Sum_probs=64.0

Q ss_pred             EeCCCceEEeCCCcEEEEEEEee---eCCCEEEEEeCCEEee----cc-----------------------CCccEEEec
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADG---YPEPRIEWYKDGSLVS----AE-----------------------IGSHRILLP  184 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g---~P~p~i~W~~~g~~l~----~~-----------------------~~~~~~~~~  184 (238)
                      ...+..+.+.+|+++.|.|.+.+   .|.|.+.|++++....    ..                       ....+..+.
T Consensus         6 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~   85 (250)
T 2fbo_J            6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVA   85 (250)
T ss_dssp             ECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECS
T ss_pred             EcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEec
Confidence            34455788999999999999988   8899999999874320    00                       001111111


Q ss_pred             ---CCcEEEEEeecCCCCCCCeEEEEEEEeCCCcee----EEEEEEEEccCCC
Q psy18191        185 ---AGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR----SKNATLDVAGKIS  230 (238)
Q Consensus       185 ---~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~----s~~~~L~V~~~~~  230 (238)
                         +..|.    |..++.+|+|.|+|.|.|..+...    +..+.|.|..++.
T Consensus        86 ~~~~~~L~----I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~  134 (250)
T 2fbo_J           86 NLAAPTLR----LTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTP  134 (250)
T ss_dssp             CTTSCCEE----ECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSC
T ss_pred             cCCcceEE----EeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCC
Confidence               13444    677799999999999999887531    2488899987643

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.07  E-value=5.5e-09  Score=75.28  Aligned_cols=94  Identities=16%  Similarity=0.230  Sum_probs=62.7

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCC---CEEEEEeCCE--Eee-c-c-----------CCccEEEecC----CcEEEE
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPE---PRIEWYKDGS--LVS-A-E-----------IGSHRILLPA----GSLFFL  191 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~---p~i~W~~~g~--~l~-~-~-----------~~~~~~~~~~----~~l~~~  191 (238)
                      +...+..+.+..|+++.|.|.+.+.+.   +.+.|++++.  .+. . .           ..++.....+    +...  
T Consensus         9 V~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~s--   86 (139)
T 1pko_A            9 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVA--   86 (139)
T ss_dssp             EECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEE--
T ss_pred             EECCCCCEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEE--
Confidence            344455788999999999999976543   7899999764  111 0 0           0111111111    2222  


Q ss_pred             EeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCCC
Q psy18191        192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       192 ~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      +.|..++.+|+|.|.|.+.|..|... ..+.|.|..+..
T Consensus        87 L~I~~v~~~D~G~Y~C~v~~~~~~~~-~~~~L~V~~P~~  124 (139)
T 1pko_A           87 LRIQNVRFSDEGGYTCFFRDHSYQEE-AAVELKVEDPFY  124 (139)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEE-EEEEEEEECTTT
T ss_pred             EEEccCCHHHCEEEEEEEEcCCCceE-EEEEEEEecCcC
Confidence            23788899999999999999998775 589999985543

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.07  E-value=6.1e-10  Score=86.24  Aligned_cols=86  Identities=15%  Similarity=0.170  Sum_probs=63.6

Q ss_pred             eCCCc-eEEeCCCcEEEEEEEeeeCCC--EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        136 EHPAS-AVVPRHEPTTLNCKADGYPEP--RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       136 ~~~~~-~~~~~G~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      ..+.. +.+..|+++.|.|.+ |.|.|  .|.|++.+..+.    .......+..|.    |.+++.+|.|.|.|.|.|.
T Consensus        11 ~pp~~~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l~----~~~~~~~~~~L~----I~~v~~~d~G~Y~C~a~n~   81 (210)
T 1gsm_A           11 EPPEPVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSLG----AVQSDTGRSVLT----VRNASLSAAGTRVCVGSCG   81 (210)
T ss_dssp             ESCCSEEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTTC----CEEEESSEEEEE----ECSCCGGGCEEEEEEEEET
T ss_pred             eCCCCceEEeCCCCEEEEEEC-CCCCCCcceEEeecccccC----cEEecCCccEEE----ECccCcccCceEEEEEEeC
Confidence            34443 688999999999999 99888  999998653331    111111122333    6677999999999999999


Q ss_pred             CCceeEEEEEEEEccCCCC
Q psy18191        213 LGFARSKNATLDVAGKIST  231 (238)
Q Consensus       213 ~G~~~s~~~~L~V~~~~~~  231 (238)
                      .|... +.+.|.|..+|..
T Consensus        82 ~~~~~-~~~~ltV~~~P~~   99 (210)
T 1gsm_A           82 GRTFQ-HTVQLLVYAFPNQ   99 (210)
T ss_dssp             TEEEE-EEEEEEEEBCCSE
T ss_pred             CCceE-EEEEEEEEecCCC
Confidence            98875 6999999887753

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.07  E-value=1e-09  Score=84.34  Aligned_cols=92  Identities=17%  Similarity=0.317  Sum_probs=61.8

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEEe---ec-------cCCccEEEe-cCCcEEEEEeecCCCCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSLV---SA-------EIGSHRILL-PAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~l---~~-------~~~~~~~~~-~~~~l~~~~vi~~v~~~  200 (238)
                      +.. |..+.+.+|+++.|.|.+.|.|.|.+.|+++  |..+   ..       ....+.... ..+...  +.|..++.+
T Consensus         4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--L~I~~v~~~   80 (210)
T 1lk3_L            4 LTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFT--LTIDPVEAD   80 (210)
T ss_dssp             EEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEE--EEESSCCGG
T ss_pred             EEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEE--EEECCCCHH
Confidence            344 6778899999999999999999999999984  2221   10       001121111 122222  237888999


Q ss_pred             CCeEEEEEEEeCCCceeEEEEEEEEccC
Q psy18191        201 DSGVYWCVARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       201 d~G~Y~C~a~N~~G~~~s~~~~L~V~~~  228 (238)
                      |+|.|.|.|.|..|......+.|.|...
T Consensus        81 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~  108 (210)
T 1lk3_L           81 DTAIYFCQQSWNGPLTFGAGTKLELKRA  108 (210)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEECCC
T ss_pred             HCeEEEEEEEcCCCceeCCCEEEEEcCC
Confidence            9999999999988765433557777653

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.07  E-value=3.4e-09  Score=82.00  Aligned_cols=136  Identities=13%  Similarity=-0.003  Sum_probs=81.5

Q ss_pred             cEEEecccccccc----ceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeC-CC
Q psy18191         65 ICLRFQDLLPQSK----QGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEH-PA  139 (238)
Q Consensus        65 ~~~w~~~~~~~~~----~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~-~~  139 (238)
                      .+.|++...++..    .+-..|.+.+++.+|.|.|.|.+.+..  |.           ....+.+.+..+|..... +.
T Consensus        39 ~i~W~~~~~~l~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~--~~-----------~~~~~~ltV~~~P~~~~i~~~  105 (210)
T 1gsm_A           39 SVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGG--RT-----------FQHTVQLLVYAFPNQLTVSPA  105 (210)
T ss_dssp             EEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETT--EE-----------EEEEEEEEEEBCCSEEEEESS
T ss_pred             ceEEeecccccCcEEecCCccEEEECccCcccCceEEEEEEeCC--Cc-----------eEEEEEEEEEecCCCcEEccc
Confidence            8999996543311    123457788999999999998776532  11           111222335567765432 32


Q ss_pred             ceEEeCCCcEEEEEEEeee-CC----CEEEEEeCCEEeeccCC-ccEEE--------ecCCcEEEEEe--ecCCCCCCCe
Q psy18191        140 SAVVPRHEPTTLNCKADGY-PE----PRIEWYKDGSLVSAEIG-SHRIL--------LPAGSLFFLSL--VHGKKDTDSG  203 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~-P~----p~i~W~~~g~~l~~~~~-~~~~~--------~~~~~l~~~~v--i~~v~~~d~G  203 (238)
                        ....|+.. |.|.+.|. |.    +++.|+|++..|..... .....        .......+...  +......|.+
T Consensus       106 --~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~  182 (210)
T 1gsm_A          106 --ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPP  182 (210)
T ss_dssp             --SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCS
T ss_pred             --eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEEEEEeecCCcccCCc
Confidence              55678888 99999986 64    48999999999864210 11110        01223332222  2233445557


Q ss_pred             EEEEEEEeCCCce
Q psy18191        204 VYWCVARNELGFA  216 (238)
Q Consensus       204 ~Y~C~a~N~~G~~  216 (238)
                      .|+|.|.+.+-..
T Consensus       183 ~~tC~a~~~L~~~  195 (210)
T 1gsm_A          183 ALYCQATMRLPGL  195 (210)
T ss_dssp             EEEEEEEEEETTE
T ss_pred             eEEEEEEeeCCCC
Confidence            9999999987444

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.06  E-value=1.1e-09  Score=87.80  Aligned_cols=124  Identities=15%  Similarity=0.233  Sum_probs=69.1

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecC---------------CccCCEEEeCCCceEEeC
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGD---------------GYRVPRITEHPASAVVPR  145 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~---------------v~~~P~i~~~~~~~~~~~  145 (238)
                      ..|.|.++.++|+|.|.|...+..  +.   .+.  ....+.+....               ....+.+.. +....+.+
T Consensus        81 ~~L~I~~v~~~DsG~Y~C~~~~~~--~~---~~~--~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~  152 (264)
T 2gjj_A           81 FTLTIGSVKAEDLAVYYCQQYSNY--PW---TFG--GGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQ-SGPEVVKT  152 (264)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSS--SC---EEC--CCEEEEEECC-------------------CCEEEE-CCCEEECT
T ss_pred             EEEEECCCCHHHCEEEEEEEecCC--cc---Eec--CCEEEEEEcCCcccccccccccccccccCcEEEeC-CCCEEEcC
Confidence            367888888999999997766531  10   000  00011100000               001122333 33457899


Q ss_pred             CCcEEEEEEEeeeCC--CEEEEEeCC--EE---eec---cC---------Ccc-EEEecCCcEEEEEeecCCCCCCCeEE
Q psy18191        146 HEPTTLNCKADGYPE--PRIEWYKDG--SL---VSA---EI---------GSH-RILLPAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       146 G~~~~L~C~~~g~P~--p~i~W~~~g--~~---l~~---~~---------~~~-~~~~~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                      |+++.|.|.+.+.|.  +.+.|+++.  ..   +..   ..         ..+ .+..........+.|..++.+|+|.|
T Consensus       153 G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y  232 (264)
T 2gjj_A          153 GASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADY  232 (264)
T ss_dssp             TCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEE
Confidence            999999999998874  899999863  21   210   00         111 11111111112233788899999999


Q ss_pred             EEEEEeC
Q psy18191        206 WCVARNE  212 (238)
Q Consensus       206 ~C~a~N~  212 (238)
                      .|.|.|.
T Consensus       233 ~C~a~n~  239 (264)
T 2gjj_A          233 YCVRSGN  239 (264)
T ss_dssp             EEEEECS
T ss_pred             EEEEecC
Confidence            9999995

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.05  E-value=3e-10  Score=90.01  Aligned_cols=96  Identities=18%  Similarity=0.226  Sum_probs=66.7

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      ...+|.|...|.. .+.+|++++|.|.+.+ +.+.+.|+|+|..+............++.|.    |..++.+|+|.|+|
T Consensus         4 ~~~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~----I~~v~~~DsG~Y~C   77 (242)
T 1p6f_A            4 TLPKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFY----IPDMNSRMAGQYSC   77 (242)
T ss_dssp             CCCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEE----ECSCCGGGCEEEEE
T ss_pred             CCCCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEE----ecCCCcccCeEEEE
Confidence            3468888887776 8899999999999865 4578999999987652100000001112232    67779999999999


Q ss_pred             EEEeCCCce-eEEEEEEEEccCC
Q psy18191        208 VARNELGFA-RSKNATLDVAGKI  229 (238)
Q Consensus       208 ~a~N~~G~~-~s~~~~L~V~~~~  229 (238)
                      .+.|..+.. .+..+.|.|.+..
T Consensus        78 ~~~~~~~~s~~S~~~~L~V~~~~  100 (242)
T 1p6f_A           78 IYRVGELWSEPSNLLDLVVTEMY  100 (242)
T ss_dssp             EEEETTEECCCCCCEEEEEECCS
T ss_pred             EEecCCccccCCcceEEEeeccc
Confidence            999976532 2457888887644

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.05  E-value=7.9e-10  Score=87.79  Aligned_cols=125  Identities=14%  Similarity=0.139  Sum_probs=68.2

Q ss_pred             EEcCCCCCCCCCceEEEeCCCcccCC-ceEEeCCCCcceecce-ecCCccCCEEEeC-CCceEEeCCCcEEEEEEEee-e
Q psy18191         83 LVGSQASPDYPNRFSLCNNKTWQKGL-PLKKYHPPSLPLFPGV-HGDGYRVPRITEH-PASAVVPRHEPTTLNCKADG-Y  158 (238)
Q Consensus        83 l~~~~~~~~~~g~y~~~~~~~~~~G~-y~c~~~~~~~~~~~~~-~~~v~~~P~i~~~-~~~~~~~~G~~~~L~C~~~g-~  158 (238)
                      |.|.++..+|+|.|.|...+.. .|. +.-.+...  ..+... ......+|.+... +....+..|+.+.|.|.+.| .
T Consensus        76 L~I~~v~~~DsG~Y~C~~~~~~-~~~~~~~~~~~~--t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~  152 (253)
T 3to4_D           76 LRLQVANMSQGRTLYCTSSADH-WTNTGQLYFGEG--SKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFY  152 (253)
T ss_dssp             CEEEEESCSSCEEEEEEEECSC-CSTTCCEEECCC--EEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEB
T ss_pred             EEEccCChhhCeEEEEEEecCC-CCcccceEECCC--EEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEE
Confidence            5666777777788776554321 000 00011011  111110 1112356766543 33334445789999999988 5


Q ss_pred             CCC-EEEEEeCCEEeeccCCccEEEe---------cCCcEEEEEe--ecCCCCCC-CeEEEEEEEeCC
Q psy18191        159 PEP-RIEWYKDGSLVSAEIGSHRILL---------PAGSLFFLSL--VHGKKDTD-SGVYWCVARNEL  213 (238)
Q Consensus       159 P~p-~i~W~~~g~~l~~~~~~~~~~~---------~~~~l~~~~v--i~~v~~~d-~G~Y~C~a~N~~  213 (238)
                      |.| .++|+++|..+...   .....         .++.+.+...  |......| .|.|+|.+.|..
T Consensus       153 P~~i~v~W~k~g~~l~~~---~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~  217 (253)
T 3to4_D          153 PDHVELSWWVNGKEVHSG---VSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (253)
T ss_dssp             SSCEEEEEEETTEEECTT---EEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             CCcEEEEEEECCEECCCc---eecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence            667 89999999988642   11100         3454433221  33334455 679999999975

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.05  E-value=8e-10  Score=84.55  Aligned_cols=90  Identities=17%  Similarity=0.190  Sum_probs=63.8

Q ss_pred             CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeecc-----------------CCccEEEecCCcEEEEEeecCCCCCC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE-----------------IGSHRILLPAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~-----------------~~~~~~~~~~~~l~~~~vi~~v~~~d  201 (238)
                      ....+.+|+++.|.|.+.+.|.+.+.|++++......                 ...+.....++.|.    |..++.+|
T Consensus         7 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~----i~~v~~~D   82 (208)
T 3r4d_A            7 VPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLL----FQMITMKD   82 (208)
T ss_dssp             ESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEE----ECSCCGGG
T ss_pred             ccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEE----EccccccC
Confidence            4467889999999999889999999999875322110                 01122233445665    56669999


Q ss_pred             CeEEEEEEEeCCCceeEEEEEEEEccCCCCC
Q psy18191        202 SGVYWCVARNELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       202 ~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~~  232 (238)
                      +|.|+|.+.|..+...+..+.|.|..++..+
T Consensus        83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p  113 (208)
T 3r4d_A           83 MGVYTLDMTDENYRRTQATVRFHVHQPVTQP  113 (208)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEEECCCCCC
T ss_pred             CeEEEEEEEcccCceeEEEEEEEeccCCCCC
Confidence            9999999999964443468889997765443

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.04  E-value=5.2e-10  Score=85.34  Aligned_cols=89  Identities=16%  Similarity=0.079  Sum_probs=64.9

Q ss_pred             CCCceEEeCCCcEEEEEEEee-eCCCEEEEEeCCEEeecc---C---------C----ccEEEecCCcEEEEEeecCCCC
Q psy18191        137 HPASAVVPRHEPTTLNCKADG-YPEPRIEWYKDGSLVSAE---I---------G----SHRILLPAGSLFFLSLVHGKKD  199 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g-~P~p~i~W~~~g~~l~~~---~---------~----~~~~~~~~~~l~~~~vi~~v~~  199 (238)
                      .|..+.+.+|+++.|.|.+.+ .+.+.+.|++++..+...   .         .    .+.....++.|.    |..++.
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~----I~~v~~   79 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQ----LSNLKM   79 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEE----ECSCCG
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEE----ECCCCc
Confidence            355678899999999999875 556899999998755310   0         0    111222355665    566699


Q ss_pred             CCCeEEEEEEEeCCCceeEEEEEEEEccCCC
Q psy18191        200 TDSGVYWCVARNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       200 ~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      +|+|.|.|.|.|..|... ..+.|.|..++.
T Consensus        80 ~D~G~Y~C~~~~~~~~~~-~~~~L~V~~~~~  109 (193)
T 2if7_A           80 EDTGSYRAQISTKTSAKL-SSYTLRILRQLR  109 (193)
T ss_dssp             GGCEEEEEEEECSSCEEE-EEEEEEEECCCE
T ss_pred             ccCceEEEEEEecCCCeE-EEEEEEEEccCC
Confidence            999999999999999875 488899876543

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=99.04  E-value=1.8e-09  Score=76.14  Aligned_cols=99  Identities=15%  Similarity=0.265  Sum_probs=59.1

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC--E---Eeecc-------CCccEEEe-cCCcEEEEEeecCCCCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG--S---LVSAE-------IGSHRILL-PAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g--~---~l~~~-------~~~~~~~~-~~~~l~~~~vi~~v~~~  200 (238)
                      +...|..+.+.+|++++|.|.+.+.+.+.+.|++..  .   .+...       ...+.... ..+...  +.|..++.+
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~--L~I~~v~~~   81 (120)
T 1mqk_L            4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFS--LKINSLLPE   81 (120)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEE--EEESSCCGG
T ss_pred             eEecCCeEEEcCCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccCCEEE--EEECCCCHH
Confidence            344566788999999999999998888899999843  2   12110       01111111 122222  237888999


Q ss_pred             CCeEEEEEEEeCC-CceeEEEEEEEEccCCCCCCC
Q psy18191        201 DSGVYWCVARNEL-GFARSKNATLDVAGKISTATD  234 (238)
Q Consensus       201 d~G~Y~C~a~N~~-G~~~s~~~~L~V~~~~~~~~~  234 (238)
                      |+|.|.|.+.|.. ......-..|.|.+....|.+
T Consensus        82 DsG~Y~C~~~~~~~~~~fg~gt~L~V~~~~~~~~~  116 (120)
T 1mqk_L           82 DFGSYYCQHHYGTPPLTFGGGTKLEIKREQKLISE  116 (120)
T ss_dssp             GCEEEEEEECSSSSSCCBCCCEEEEEC--------
T ss_pred             HCEEEEEEEEeCCCceEECCCeEEEEecCCCCCch
Confidence            9999999999854 212123557888776655544

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.04  E-value=1.2e-10  Score=76.18  Aligned_cols=60  Identities=22%  Similarity=0.364  Sum_probs=47.8

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCC-CCCCCeEEEEEEEe
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGK-KDTDSGVYWCVARN  211 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v-~~~d~G~Y~C~a~N  211 (238)
                      |....+..|++++|.|.+.|.|.  |+|+|+|..+...        .++.|.    |..+ ..+|+|.|+|.|.+
T Consensus         6 p~~~v~~~G~~v~L~C~~~g~P~--i~W~kdg~~l~~~--------~~~~L~----I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E            6 IEYKVSISGTSVELTCPLDSDEN--LKWEKNGQELPQK--------HDKHLV----LQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             CCCEEEEETTEEEEECSSCCCSS--CEEEETTEECTTC--------CSSCCB----CCSCCTTTTCSCEEEECSS
T ss_pred             CceeEEEcCCeEEEEEECCCCCc--EEEEECCEECcCC--------CCCEEE----ECccCccCcCEEEEEEEcc
Confidence            44566778999999999999984  9999999988632        345554    5664 67999999999976

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=99.04  E-value=8e-10  Score=77.64  Aligned_cols=87  Identities=23%  Similarity=0.279  Sum_probs=60.0

Q ss_pred             eCCCceEEeCCCcEEEEEEEeeeCC----CEEEEEeCC-------EEeecc------------CCccEEEecC------C
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGYPE----PRIEWYKDG-------SLVSAE------------IGSHRILLPA------G  186 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~P~----p~i~W~~~g-------~~l~~~------------~~~~~~~~~~------~  186 (238)
                      ..+..+.+.+|+++.|.|.+.+.|.    +.+.|++++       ..+...            ...+.....+      .
T Consensus        10 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   89 (126)
T 1eaj_A           10 TPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDA   89 (126)
T ss_dssp             SSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBC
T ss_pred             CCCceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccCCeE
Confidence            3345678899999999999987765    459999864       222110            0112222221      3


Q ss_pred             cEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191        187 SLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG  227 (238)
Q Consensus       187 ~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~  227 (238)
                      +|.    |..++.+|+|.|.|.+.|..|... ..+.|.|..
T Consensus        90 sL~----I~~v~~~D~G~Y~C~v~~~~~~~~-~~~~L~V~~  125 (126)
T 1eaj_A           90 SIN----VTNLQLSDIGTYQCKVKKAPGVAN-KKIHLVVLV  125 (126)
T ss_dssp             CEE----ECSCCGGGCEEEEEEEEETTEEEE-EEEEEEEEC
T ss_pred             EEE----ECcCChHHCeEEEEEEEcCCccCC-cEEEEEEEc
Confidence            344    677799999999999999988875 589998864

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.04  E-value=5.7e-10  Score=84.61  Aligned_cols=90  Identities=17%  Similarity=0.169  Sum_probs=66.6

Q ss_pred             CceEEeCCCcEEEEEEEe--eeCCCEEEEEe--CCEEeec--------cCCccEEEecCCcEEEEEeecCCCCCCCeEEE
Q psy18191        139 ASAVVPRHEPTTLNCKAD--GYPEPRIEWYK--DGSLVSA--------EIGSHRILLPAGSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~--g~P~p~i~W~~--~g~~l~~--------~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      ..+....|+++.|.|...  +.|.|.|.|++  ++..|..        ....+.....+|+|.    |..++.+|+|.|+
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~----I~~v~~~DsG~Y~   82 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLK----IKHLKTDDQDIYK   82 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEE----ECSCCGGGCEEEE
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEE----ECCCChhhCEEEE
Confidence            456778999999999643  35678999999  8877631        113445556778887    5566999999999


Q ss_pred             EEEEeCCCcee-EEEEEEEEccCCCCC
Q psy18191        207 CVARNELGFAR-SKNATLDVAGKISTA  232 (238)
Q Consensus       207 C~a~N~~G~~~-s~~~~L~V~~~~~~~  232 (238)
                      |.|.|..|... ...+.|.|..+.+.|
T Consensus        83 c~~~n~~g~~~~~~~~~L~V~~~~~~P  109 (182)
T 1hnf_A           83 VSIYDTKGKNVLEKIFDLKIQERVSKP  109 (182)
T ss_dssp             EEEEETTSCEEEEEEEEEEEECCCCCC
T ss_pred             EEEEeCCCceeEEEEEEEEEcCcCCCC
Confidence            99999998863 246788888765444

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.04  E-value=8.9e-10  Score=84.99  Aligned_cols=95  Identities=16%  Similarity=0.231  Sum_probs=61.7

Q ss_pred             CEEEeCCCceEEeCCCcEEEEEEEeee-CCCEEEEEeCC---E--EeeccCC-----------ccEEE-ecCCcEEEEEe
Q psy18191        132 PRITEHPASAVVPRHEPTTLNCKADGY-PEPRIEWYKDG---S--LVSAEIG-----------SHRIL-LPAGSLFFLSL  193 (238)
Q Consensus       132 P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~p~i~W~~~g---~--~l~~~~~-----------~~~~~-~~~~~l~~~~v  193 (238)
                      |.+...| .+.+.+|+++.|.|.+.+. |.+.+.|++..   .  .+.....           .+... ...+...  +.
T Consensus         2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--L~   78 (218)
T 3s96_B            2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRY--LS   78 (218)
T ss_dssp             CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEE--EE
T ss_pred             CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEE--EE
Confidence            3455556 7889999999999999999 99999999831   1  1110000           11111 1122222  23


Q ss_pred             ecCCCCCCCeEEEEEEEeCCCc----eeEEEEEEEEccCC
Q psy18191        194 VHGKKDTDSGVYWCVARNELGF----ARSKNATLDVAGKI  229 (238)
Q Consensus       194 i~~v~~~d~G~Y~C~a~N~~G~----~~s~~~~L~V~~~~  229 (238)
                      |..++.+|+|.|.|.|.|..|.    .....+.|.|...+
T Consensus        79 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~  118 (218)
T 3s96_B           79 ISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQP  118 (218)
T ss_dssp             ESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCC
T ss_pred             EccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCC
Confidence            7888999999999999998871    11235678887543

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.04  E-value=5.5e-10  Score=89.46  Aligned_cols=127  Identities=12%  Similarity=0.089  Sum_probs=71.3

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee-C
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY-P  159 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P  159 (238)
                      ..|.|.++..+|+|.|.|...+..  +. .-.+..  ...+. +......+|.+...+....+..|+.+.|.|.+.|. |
T Consensus        85 ~sL~I~~v~~~DsG~Y~C~~~~~~--~~-~~~~~~--~~~L~-V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P  158 (261)
T 2xqy_G           85 VYIQLSSLTSEDSAVYYCGRLGYV--YG-FDYWGQ--GTTLT-VSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFP  158 (261)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTT--SS-EEEECC--CEEEE-ECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBS
T ss_pred             EEEEEcCCCcccCeEEEEEEecCC--Cc-ceEECC--CEEEE-EccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeC
Confidence            357788888888888887665521  10 000100  11111 11112245666543323345789999999999885 7


Q ss_pred             CC-EEEEEeCCEEeeccCCccEEEecCCcEE--EEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        160 EP-RIEWYKDGSLVSAEIGSHRILLPAGSLF--FLSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       160 ~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~--~~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      .| .+.|++++..+......... . .+...  ..+.|..+...| |.|+|.|.|.....
T Consensus       159 ~~i~v~W~k~g~~~~~~~~~~~~-~-~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~  215 (261)
T 2xqy_G          159 EPVTLTWNSGSLSSGVHTFPAVL-Q-SDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST  215 (261)
T ss_dssp             SCCEEEEGGGTCCTTEEECCCEE-E-TTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred             CCCEEEEecCCCcCceEecCcee-c-CCcEEEEEEEEEeccccCC-CEEEEEEEECCCCc
Confidence            77 99999998765321111111 1 13222  122355666677 99999999976544

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.04  E-value=3.3e-09  Score=91.83  Aligned_cols=139  Identities=12%  Similarity=0.116  Sum_probs=75.8

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee-CC
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY-PE  160 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~  160 (238)
                      .|.|.++.++|+|.|.|...+..  |.+...........+. +......+|.+...+. ..+.+|+.+.|.|.+.|. |.
T Consensus        81 ~L~I~~v~~~D~G~Y~C~~~~~~--~~~~~~~~~~~~~~l~-V~~~~~~~P~i~~~~~-~~~~~g~~v~L~C~~~g~~P~  156 (475)
T 1iga_A           81 YMGLSSLRPEDTAVYYCARDPYG--GGKSEFDYWGQGTLVT-VSSASPTSPKVFPLSL-CSTQPDGNVVIACLVQGFFPQ  156 (475)
T ss_pred             EEEECCCChhhCEEEEEEEeccC--CCccceeeecCceEEE-eccCCCcCCeEEecCc-cccCCCCeEEEEEEEeeecCC
Confidence            57777888888888887665521  1100000000111111 1101123566654332 223689999999999987 65


Q ss_pred             -C-EEEEEeCCEEeeccCCccEEE-ecCCcEEEE--EeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        161 -P-RIEWYKDGSLVSAEIGSHRIL-LPAGSLFFL--SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       161 -p-~i~W~~~g~~l~~~~~~~~~~-~~~~~l~~~--~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                       | .+.|++++...... ...... ..++...+.  ..|..+...|.|.|+|.|.|..|......+.|.|
T Consensus       157 ~p~~v~W~~~~~~~~~~-~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V  225 (475)
T 1iga_A          157 EPLSVTWSESGQGVTAR-NFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPV  225 (475)
T ss_pred             CceEEEEcCCCcccceE-eCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEeccc
Confidence             5 99999988533211 001111 123333221  2245567789999999999999854323444433

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.03  E-value=2e-09  Score=75.57  Aligned_cols=91  Identities=14%  Similarity=0.222  Sum_probs=61.3

Q ss_pred             CCceEEeCCCcEEEEEEEee--eCCCEEEEEeCCEEeeccC-----------CccEEEecCCcEEEEEeecCCCCCCCeE
Q psy18191        138 PASAVVPRHEPTTLNCKADG--YPEPRIEWYKDGSLVSAEI-----------GSHRILLPAGSLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g--~P~p~i~W~~~g~~l~~~~-----------~~~~~~~~~~~l~~~~vi~~v~~~d~G~  204 (238)
                      +..+.+.+|+++.|.|...+  .+.+.+.|++++..+....           .++.....+..|.    |.+++.+|+|.
T Consensus        10 ~~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~----I~~v~~~D~G~   85 (117)
T 3q0h_A           10 TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLT----LQSLTVNDTGE   85 (117)
T ss_dssp             SCCEEEETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEECSTTCEE----ECSCCGGGCEE
T ss_pred             cCCEEEecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEeCCceEEE----EeeCChhhCEE
Confidence            45688999999999999876  3345799999875543210           1122222244554    66779999999


Q ss_pred             EEEEEE-eCCCceeEEEEEEEEccCCCCCC
Q psy18191        205 YWCVAR-NELGFARSKNATLDVAGKISTAT  233 (238)
Q Consensus       205 Y~C~a~-N~~G~~~s~~~~L~V~~~~~~~~  233 (238)
                      |.|.+. +..|... ..+.|.|..++.+..
T Consensus        86 Y~C~v~~~~~g~~~-~~~~L~V~~pp~~~~  114 (117)
T 3q0h_A           86 YFCIYHTYPDGTYT-GRIFLEVLESSVAEH  114 (117)
T ss_dssp             EEEEEEEETTCCEE-EEEEEEEECC-----
T ss_pred             EEEEEEECCCCCeE-EEEEEEEEccCcccc
Confidence            999865 5668775 589999998876653

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.03  E-value=2.2e-09  Score=83.77  Aligned_cols=97  Identities=13%  Similarity=0.252  Sum_probs=64.0

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC--E---Eeecc-------CCccEE-EecCCcEEEEEeecC
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG--S---LVSAE-------IGSHRI-LLPAGSLFFLSLVHG  196 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g--~---~l~~~-------~~~~~~-~~~~~~l~~~~vi~~  196 (238)
                      ..+.+...|..+.+.+|+++.|.|.+.+.|.+.+.|+++.  .   .+...       ...+.. ....+...+  .|..
T Consensus        23 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L--~I~~  100 (237)
T 3sob_L           23 ADIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTL--TISS  100 (237)
T ss_dssp             -CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEE--EESS
T ss_pred             ccceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEE--EECC
Confidence            3455666677889999999999999999999999999842  1   11100       011111 112222222  3788


Q ss_pred             CCCCCCeEEEEEEEeCCCceeEEEEEEEEccC
Q psy18191        197 KKDTDSGVYWCVARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~  228 (238)
                      ++.+|+|.|.|.+.|..+......+.|.|...
T Consensus       101 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~  132 (237)
T 3sob_L          101 LQPEDFATYYCQQSYTTPPTFGQGTKVEIKRT  132 (237)
T ss_dssp             CCGGGCEEEEEEECSSSSCEECCCEEEEEECC
T ss_pred             CChhhCeEEEEeeccCCceEEcCcEEEEEecC
Confidence            89999999999999987654334556777553

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.03  E-value=3.2e-10  Score=86.01  Aligned_cols=73  Identities=21%  Similarity=0.293  Sum_probs=55.8

Q ss_pred             EEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecC-CCCCCCeEEEEEEEeCCCceeEEE
Q psy18191        142 VVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHG-KKDTDSGVYWCVARNELGFARSKN  220 (238)
Q Consensus       142 ~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~-v~~~d~G~Y~C~a~N~~G~~~s~~  220 (238)
                      ....|+++.|.|.+.| |.+ +.|+|+|..+...        .++.|.    |.. +..+|+|.|+|.|.|..|... ..
T Consensus        10 v~~~G~~v~L~C~~~~-~~~-i~W~k~g~~l~~~--------~~~~L~----I~~~~~~~D~G~Y~C~a~n~~g~~~-~~   74 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-DEN-LKWEKNGQELPQK--------HDKHLV----LQDFSEVEDSGYYVCYTPASNKNTY-LY   74 (186)
T ss_dssp             EEEETTEEEEECSSCC-CTT-CEEEETTEEECSC--------CCSEEE----EESCCTTTSCEEEEEECSSCCCCCC-EE
T ss_pred             EEeCCcEEEEEEeCCC-CCc-eEEEECCEECCCC--------CCCEEE----ECCCCccccCEEEEEEEEeCCCcEE-EE
Confidence            3467999999999988 544 9999999988742        234454    555 699999999999999999864 46


Q ss_pred             EEEEEccCC
Q psy18191        221 ATLDVAGKI  229 (238)
Q Consensus       221 ~~L~V~~~~  229 (238)
                      +.+.|....
T Consensus        75 ~~~~v~~~~   83 (186)
T 1jbj_A           75 LKARVGSAD   83 (186)
T ss_dssp             ECCCCCSCC
T ss_pred             EEEEEeccc
Confidence            666665443

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=99.02  E-value=6e-09  Score=69.77  Aligned_cols=86  Identities=20%  Similarity=0.296  Sum_probs=65.8

Q ss_pred             ceEEeCCCcEEEEEEEee-eCCCEEEEEeCC----EEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        140 SAVVPRHEPTTLNCKADG-YPEPRIEWYKDG----SLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g-~P~p~i~W~~~g----~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      ..++..|+++.|.|.+.+ .+.|+++|-|-+    .+|...  .......+....+.+-+..+...|+|.|.|.|.+..|
T Consensus        20 ~hsv~~G~~f~leCpv~yc~~rP~VtWcKln~~~c~~L~~~--~q~w~E~~N~s~fvLhf~~V~~sDsGsYRCsAn~~sg   97 (120)
T 2aw2_A           20 EHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDR--QTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSN   97 (120)
T ss_dssp             EEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSS--CEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cceEecCCeEEEEccEEeccCCCceEEEecCCceEEECccc--cccceecCCeeEEEEEEeeeeEcCCcceEEEeeCCCC
Confidence            467889999999999988 699999998844    455431  1122233444444444788899999999999999999


Q ss_pred             ceeEEEEEEEEcc
Q psy18191        215 FARSKNATLDVAG  227 (238)
Q Consensus       215 ~~~s~~~~L~V~~  227 (238)
                      ..+|+..+|.|.+
T Consensus        98 ~ieSHsvtI~Vt~  110 (120)
T 2aw2_A           98 LIESHSTTLYVTD  110 (120)
T ss_dssp             EEECCCEEEEEEC
T ss_pred             cEEeeEEEEEEEe
Confidence            9999888888865

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.01  E-value=4.8e-10  Score=88.81  Aligned_cols=87  Identities=22%  Similarity=0.383  Sum_probs=54.8

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeee-CCC-EEEEEeCCEEeeccCCccEEEecCCcEEEEEeec--CCCCCCCe
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGY-PEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVH--GKKDTDSG  203 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~--~v~~~d~G  203 (238)
                      +..+|.+...+.......|+.+.|.|.+.|. |.+ .+.|+++|..+............+|++.+...+.  .....|.|
T Consensus       127 ~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~  206 (240)
T 4acp_A          127 QPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGN  206 (240)
T ss_dssp             CCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTC
T ss_pred             CCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCC
Confidence            4567887765444333358999999999984 554 7999999988643111111223456655443321  11224689


Q ss_pred             EEEEEEEeCCC
Q psy18191        204 VYWCVARNELG  214 (238)
Q Consensus       204 ~Y~C~a~N~~G  214 (238)
                      .|+|.+.+..-
T Consensus       207 ~ytC~V~h~~l  217 (240)
T 4acp_A          207 VFSCSVMHEAL  217 (240)
T ss_dssp             CEEEEEECTTS
T ss_pred             EEEEEEEECCC
Confidence            99999999764

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.01  E-value=1.1e-09  Score=86.19  Aligned_cols=130  Identities=14%  Similarity=0.202  Sum_probs=72.8

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCccc-CCceEEeCCCCcceeccee-cCCccCCEEEe-CCCceEEeCCCcEEEEEEEee
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQK-GLPLKKYHPPSLPLFPGVH-GDGYRVPRITE-HPASAVVPRHEPTTLNCKADG  157 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~-G~y~c~~~~~~~~~~~~~~-~~v~~~P~i~~-~~~~~~~~~G~~~~L~C~~~g  157 (238)
                      ..|.|.++..+|+|.|.|...+.... +..  .+.  ....+.+.. .....+|.+.. .+....+..|+.+.|.|.+.|
T Consensus        72 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~--~~~--~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g  147 (238)
T 1bec_A           72 FSLILELATPSQTSVYFCASGGGRGSYAEQ--FFG--PGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARG  147 (238)
T ss_dssp             EEEEESSCCGGGCEEEEEEEESCTTCGGGC--EEC--CCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEE
T ss_pred             EEEEEecCCcccCEEEEEEEecCCCCcccc--ccC--CCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEee
Confidence            35777788888888888765542100 000  000  001111100 00124677654 344455678999999999998


Q ss_pred             e-CCC-EEEEEeCCEEeeccCCc--cEEEecCCcEEEEEeecC--CCCCC-CeEEEEEEEeCCC
Q psy18191        158 Y-PEP-RIEWYKDGSLVSAEIGS--HRILLPAGSLFFLSLVHG--KKDTD-SGVYWCVARNELG  214 (238)
Q Consensus       158 ~-P~p-~i~W~~~g~~l~~~~~~--~~~~~~~~~l~~~~vi~~--v~~~d-~G~Y~C~a~N~~G  214 (238)
                      . |.| .+.|+++|..+......  ......++.+.+...+..  ....| .|.|+|.|.|...
T Consensus       148 ~~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  211 (238)
T 1bec_A          148 FFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL  211 (238)
T ss_dssp             EBSCCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred             EeCCCcEEEEEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence            6 655 89999999988642100  112234565554433221  12223 6789999999753

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.01  E-value=2e-09  Score=86.72  Aligned_cols=130  Identities=14%  Similarity=0.124  Sum_probs=72.9

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceeccee-cCCccCCEEEeC-CCceEEeCCCcEEEEEEEeeeC
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVH-GDGYRVPRITEH-PASAVVPRHEPTTLNCKADGYP  159 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~-~~v~~~P~i~~~-~~~~~~~~G~~~~L~C~~~g~P  159 (238)
                      .|.|.++..+|+|.|.|...+....+.+.-.+.  ....+.+.. .....+|.+... +....+.+|+.+.|.|.+.|.+
T Consensus       101 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~--~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~  178 (279)
T 2wbj_D          101 TLTVTSAHPEDSSFYICSARDLTSGANNEQFFG--PGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFY  178 (279)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTCBTSCCEEEC--CCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEB
T ss_pred             EEEEccCCccCCEEEEEEEcccccCCccceeeC--CCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEc
Confidence            577778888888888866554110000000000  011111100 011246777543 4444455799999999999874


Q ss_pred             C--CEEEEEeCCEEeeccCCccEEE---------ecCCcEEEEE--eecCCCCCC-CeEEEEEEEeCCCce
Q psy18191        160 E--PRIEWYKDGSLVSAEIGSHRIL---------LPAGSLFFLS--LVHGKKDTD-SGVYWCVARNELGFA  216 (238)
Q Consensus       160 ~--p~i~W~~~g~~l~~~~~~~~~~---------~~~~~l~~~~--vi~~v~~~d-~G~Y~C~a~N~~G~~  216 (238)
                      +  |.+.|+++|..+...   ....         ..++...+..  .|......| .|.|+|.|.|.....
T Consensus       179 P~~~~v~W~k~g~~l~~~---~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~  246 (279)
T 2wbj_D          179 PDHVELSWWVNGKEVHSG---VSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  246 (279)
T ss_dssp             SSCEEEEEEETTEECCTT---EEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCT
T ss_pred             CCCcEEEEEECCEECCCC---cccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCC
Confidence            3  699999999988642   1110         1344443322  244444444 678999999987654

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.01  E-value=1.2e-09  Score=83.67  Aligned_cols=91  Identities=23%  Similarity=0.290  Sum_probs=64.6

Q ss_pred             CCCceEEeCCCcEEEEEEEeeeC----CCEEEEEe----------------CCEEeec---cCCccEEEec------CCc
Q psy18191        137 HPASAVVPRHEPTTLNCKADGYP----EPRIEWYK----------------DGSLVSA---EIGSHRILLP------AGS  187 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~P----~p~i~W~~----------------~g~~l~~---~~~~~~~~~~------~~~  187 (238)
                      .+..+.+.+|+++.|.|.+.+.|    .+.+.|++                ++..+..   ....+.....      +..
T Consensus         6 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~   85 (214)
T 3jz7_A            6 PEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDAS   85 (214)
T ss_dssp             CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCC
T ss_pred             CCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCccc
Confidence            34567889999999999998887    57999998                3333321   0011122211      234


Q ss_pred             EEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCCCCC
Q psy18191        188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       188 l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~~  232 (238)
                      |.    |..++.+|+|.|+|.|.|..|... ..+.|.|..++..+
T Consensus        86 L~----i~~v~~~D~G~Y~C~~~~~~~~~~-~~~~l~V~~~p~~~  125 (214)
T 3jz7_A           86 IN----VTNLQLSDIGTYQCKVKKAPGVAN-KKFLLTVLVKPSGT  125 (214)
T ss_dssp             EE----ECSCCGGGCEEEEEEEEETTEEEE-EEEEEEEECCCBSC
T ss_pred             EE----EccCChhhCeEEEEEEEeCCCccc-cEEEEEEEcCCCCc
Confidence            44    667799999999999999999885 59999998776544

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.00  E-value=1.1e-09  Score=83.92  Aligned_cols=79  Identities=14%  Similarity=0.202  Sum_probs=57.7

Q ss_pred             eCCCcEEEEEEEeee-CCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEE
Q psy18191        144 PRHEPTTLNCKADGY-PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNAT  222 (238)
Q Consensus       144 ~~G~~~~L~C~~~g~-P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~  222 (238)
                      -.++.+.|.|.+.+. |.|.+.|+++|..+... ....+...++...+  .|..++.+|+|.|+|.|.|..|... ..+.
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~-~~~~~~~~~~~~~L--~i~~v~~~D~G~Y~C~~~n~~~~~~-~~~~   90 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS-DRVKTGVTGEQIWL--QINEPTPNDKGKYVMELFDGKTGHQ-KTVD   90 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCC-SSEEEEEETTEEEE--EEESCCGGGCEEEEEEEECSSCEEE-EEEE
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEccCC-CeEEEEEeCCEEEE--EECCCCcccCEEEEEEEecCCcceE-EEEE
Confidence            357778889988875 58999999999988753 22333333333222  2677799999999999999999886 4777


Q ss_pred             EEEc
Q psy18191        223 LDVA  226 (238)
Q Consensus       223 L~V~  226 (238)
                      |.|.
T Consensus        91 l~v~   94 (212)
T 2r15_A           91 LSGQ   94 (212)
T ss_dssp             ECHH
T ss_pred             EEEe
Confidence            7654

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.00  E-value=8.6e-09  Score=80.11  Aligned_cols=89  Identities=18%  Similarity=0.233  Sum_probs=59.2

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCC---EEEEEeCCEEee-----------ccC----CccEEEec----CCcEEEEEeec
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEP---RIEWYKDGSLVS-----------AEI----GSHRILLP----AGSLFFLSLVH  195 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p---~i~W~~~g~~l~-----------~~~----~~~~~~~~----~~~l~~~~vi~  195 (238)
                      +..+.+.+|+++.|.|.+.+.|.+   .|.|+|++....           ...    ..+.....    .+...+  .|.
T Consensus        11 ~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L--~I~   88 (226)
T 4f80_A           11 SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAAL--RIH   88 (226)
T ss_dssp             SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEE--EES
T ss_pred             CCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEE--EEe
Confidence            345788999999999999877665   699998763221           100    01111111    122222  378


Q ss_pred             CCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        196 GKKDTDSGVYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      .++.+|+|.|+|.|.|..|... ..+.+.+....
T Consensus        89 ~v~~~D~G~Y~C~a~n~~~~~~-~~v~~~~~~~~  121 (226)
T 4f80_A           89 NVTASDSGKYLCYFQDGDFYEK-ALVELKVAALG  121 (226)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEE-EEEEEEEEBCC
T ss_pred             eCchHHCeeEEEEEECCCcEEE-EEEEEeeccce
Confidence            8899999999999999998886 36666665544

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.99  E-value=2.6e-09  Score=84.58  Aligned_cols=97  Identities=15%  Similarity=0.263  Sum_probs=63.8

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeC-----CCEEEEEeCC--EE---eec-------cCCccEEEe-cCCcEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYP-----EPRIEWYKDG--SL---VSA-------EIGSHRILL-PAGSLFFL  191 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P-----~p~i~W~~~g--~~---l~~-------~~~~~~~~~-~~~~l~~~  191 (238)
                      ..+.+...|..+.+.+|+++.|.|.+.+.|     .+.+.|++++  ..   +..       ....+.... .++...+ 
T Consensus        33 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L-  111 (252)
T 3bkj_L           33 SDVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTL-  111 (252)
T ss_dssp             -CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEE-
T ss_pred             cccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEE-
Confidence            345566667788999999999999999888     6899999854  11   110       001111111 1222222 


Q ss_pred             EeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccC
Q psy18191        192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       192 ~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~  228 (238)
                       .|..++.+|+|.|.|.|.|..+......+.|.|...
T Consensus       112 -~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~  147 (252)
T 3bkj_L          112 -RISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRA  147 (252)
T ss_dssp             -EESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCC
T ss_pred             -EECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCC
Confidence             378889999999999999987654323456777653

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=98.99  E-value=1.7e-09  Score=75.23  Aligned_cols=87  Identities=22%  Similarity=0.238  Sum_probs=57.5

Q ss_pred             CCceEEeCCCcEEEEEEE-eeeCCCE----EEEEeCCEEee--c---------cCCccEEEec--------CCcEEEEEe
Q psy18191        138 PASAVVPRHEPTTLNCKA-DGYPEPR----IEWYKDGSLVS--A---------EIGSHRILLP--------AGSLFFLSL  193 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~-~g~P~p~----i~W~~~g~~l~--~---------~~~~~~~~~~--------~~~l~~~~v  193 (238)
                      |..+.+.+|+++.|.|.+ .+.+.+.    +.|++++....  .         ....+.....        +..|.    
T Consensus         7 p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~----   82 (118)
T 3udw_C            7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR----   82 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEE----
T ss_pred             CCeEEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEE----
Confidence            345778999999999998 4555444    99999753210  0         0011111111        23444    


Q ss_pred             ecCCCCCCCeEEEEEEEe-CCCceeEEEEEEEEccCC
Q psy18191        194 VHGKKDTDSGVYWCVARN-ELGFARSKNATLDVAGKI  229 (238)
Q Consensus       194 i~~v~~~d~G~Y~C~a~N-~~G~~~s~~~~L~V~~~~  229 (238)
                      |..++.+|+|.|.|.+.| ..|... ..+.|.|..+|
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~~~~~-~~~~L~V~~~P  118 (118)
T 3udw_C           83 MFGLRVEDEGNYTCLFVTFPQGSRS-VDIWLRVLAKP  118 (118)
T ss_dssp             ECSCCGGGCEEEEEEEEEETTEEEE-EEEEEEEEC--
T ss_pred             EeecChHHCeEEEEEEEECCCCCcc-ceEEEEEEeCC
Confidence            677799999999999999 777775 58899997654

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=98.99  E-value=2.9e-10  Score=88.19  Aligned_cols=87  Identities=17%  Similarity=0.256  Sum_probs=56.6

Q ss_pred             CccCCEEEeC-CCceEEeCCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccC--CccEEEe---cCCcEEEEEeecCCCC
Q psy18191        128 GYRVPRITEH-PASAVVPRHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEI--GSHRILL---PAGSLFFLSLVHGKKD  199 (238)
Q Consensus       128 v~~~P~i~~~-~~~~~~~~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~--~~~~~~~---~~~~l~~~~vi~~v~~  199 (238)
                      +..+|.+... +....+..|+.+.|.|.+.|. |. +.|.|+++|..+....  .......   .+|++.+...+. +..
T Consensus       103 ~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~dgt~~~~s~l~-v~~  181 (214)
T 1ow0_A          103 NTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILR-VAA  181 (214)
T ss_dssp             SCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEE-EEH
T ss_pred             CCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCcccccCCCCcEEEEEEEE-ECH
Confidence            5578887543 333345678999999999996 43 4899999999886431  0111223   466665543321 133


Q ss_pred             ---CCCeEEEEEEEeCCCc
Q psy18191        200 ---TDSGVYWCVARNELGF  215 (238)
Q Consensus       200 ---~d~G~Y~C~a~N~~G~  215 (238)
                         .|.|.|+|.|.|..-.
T Consensus       182 ~~~~~~~~ytC~v~n~~l~  200 (214)
T 1ow0_A          182 EDWKKGDTFSCMVGHEALP  200 (214)
T ss_dssp             HHHHHTCCEEEEEECTTCT
T ss_pred             HHccCCCEEEEEEECCCCC
Confidence               3478999999998754

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=98.99  E-value=5.4e-10  Score=83.73  Aligned_cols=85  Identities=19%  Similarity=0.159  Sum_probs=62.5

Q ss_pred             ceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCC---------ccEEEe--cCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        140 SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---------SHRILL--PAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~---------~~~~~~--~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      .+.+.+|++++|.|.+.+ |.+.|.|++++..+.....         ..+..+  .+++|.    |..++.+|+|.|.|.
T Consensus         4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~----I~~v~~~DsG~Y~C~   78 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLT----IYNLTSSDEDEYEME   78 (171)
T ss_dssp             EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEE----ECSCCGGGCEEEEEE
T ss_pred             EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEE----ECCCChhhCceEEEE
Confidence            466789999999999844 8899999998875432100         112222  456666    566699999999999


Q ss_pred             EEeCCCceeEEEEEEEEccCCCCC
Q psy18191        209 ARNELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~~~~~~  232 (238)
                      |.|..|  . ..+.|.|..+++.|
T Consensus        79 ~~n~~~--~-~~~~L~V~~~~~~p   99 (171)
T 1ccz_A           79 SPNITD--T-MKFFLYVLEMVSKP   99 (171)
T ss_dssp             CTTCCS--C-EEEEEEEECCCCCC
T ss_pred             EeCCCC--c-EEEEEEEECcCCCC
Confidence            999988  3 58899998776544

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=98.98  E-value=9e-10  Score=86.27  Aligned_cols=138  Identities=12%  Similarity=0.146  Sum_probs=72.2

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCc---eEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLP---LKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY  158 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y---~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~  158 (238)
                      .|.|.++.++|+|.|.|...+... +.|   .-.+.  ....+. +......+|.+...+....+..|+.+.|.|.+.|.
T Consensus        84 sL~I~~v~~~DsG~Y~C~~~~~~~-~~~~~~~~~~~--~~~~l~-V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~  159 (232)
T 3qhz_H           84 VLTMTNMDPVDTATYYCARTLRVS-GDYVRDFDLWG--RGTLVT-VSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDY  159 (232)
T ss_dssp             EEEECSCCGGGCEEEEEEEECCC----CCCCCCEEC--CCEEEE-ECSSCCBCCEEEEECC-------CEEEEEEEEEEE
T ss_pred             EEEECcCChhhCEEEEEEEeeccC-ccccccceeeC--CCeEEE-EecCCCCCCEEEEecccccccCCCcEEEEEEEeeE
Confidence            467777777788887766543210 000   00000  111111 11123457777644344455679999999999886


Q ss_pred             CC--CEEEEEeCCEEeeccCCccEEEecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191        159 PE--PRIEWYKDGSLVSAEIGSHRILLPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA  226 (238)
Q Consensus       159 P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~  226 (238)
                      ++  ..+.|++++..+...... .....++...+  ...|......| |.|+|.|.|..+... ....|.+.
T Consensus       160 ~P~~~~v~W~~~g~~~~~~~~~-~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~-~~~~l~~~  228 (232)
T 3qhz_H          160 FPEPVTVSWNSGALTSGVHTFP-AVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK-VDKRVEPK  228 (232)
T ss_dssp             BSSCCEEEEGGGTBCTTEEECC-CEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEE-EEEECCCC
T ss_pred             eCCCeEEEEEECCEecceeecc-ceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCcc-EEEEeCCC
Confidence            54  357899988643221111 11222343322  12244556678 999999999988775 36666553

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.98  E-value=3.2e-08  Score=86.62  Aligned_cols=96  Identities=19%  Similarity=0.285  Sum_probs=59.4

Q ss_pred             cCCEEEeCCCceEEeCCCcEE-EEEEEeeeCCC--EEEEEeCCEEeeccCCc--cEEEecCCc-EEEEEe--ecCCCCCC
Q psy18191        130 RVPRITEHPASAVVPRHEPTT-LNCKADGYPEP--RIEWYKDGSLVSAEIGS--HRILLPAGS-LFFLSL--VHGKKDTD  201 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~-L~C~~~g~P~p--~i~W~~~g~~l~~~~~~--~~~~~~~~~-l~~~~v--i~~v~~~d  201 (238)
                      .+|.+...+...   .|+.+. |.|.+.|.+++  .+.|+|+|..+......  ......++. +.+...  +.....+|
T Consensus       402 ~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~  478 (512)
T 1zvo_C          402 VKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQ  478 (512)
T ss_pred             CCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhcCC
Confidence            567765543322   789999 99999996554  58999999988643111  112233454 433222  33334556


Q ss_pred             CeEEEEEEEeCCCce-eEEEEEEEEccC
Q psy18191        202 SGVYWCVARNELGFA-RSKNATLDVAGK  228 (238)
Q Consensus       202 ~G~Y~C~a~N~~G~~-~s~~~~L~V~~~  228 (238)
                      .|.|+|.|.|..... ......|.|...
T Consensus       479 ~g~YtC~v~h~~l~~~~~~~~~~~v~~~  506 (512)
T 1zvo_C          479 PATYTCVVSHEDSRTLLNASRSLEVSYV  506 (512)
T ss_pred             CCeEEEEEEecCCCCceEEEEEEEeccC
Confidence            999999999987543 223556666543

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.98  E-value=4.6e-09  Score=81.10  Aligned_cols=91  Identities=21%  Similarity=0.219  Sum_probs=62.1

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCC-----CEEEEEeCCEEeeccCC-------------ccEEEec----CCcEEEEEeec
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPE-----PRIEWYKDGSLVSAEIG-------------SHRILLP----AGSLFFLSLVH  195 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~-----p~i~W~~~g~~l~~~~~-------------~~~~~~~----~~~l~~~~vi~  195 (238)
                      +..+.+.+|+++.|.|.+.|.|.     +.+.|++++..+.....             .+.....    .+...  +.|.
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~--L~I~   85 (222)
T 3sbw_C            8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAA--LQIT   85 (222)
T ss_dssp             CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEE--EEES
T ss_pred             CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEE--EEEc
Confidence            34567889999999999988774     48999998744422100             1111111    12222  2378


Q ss_pred             CCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCCCCC
Q psy18191        196 GKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~~  232 (238)
                      .++.+|+|.|+|.|.| .|... ..+.|.|..++..+
T Consensus        86 ~v~~~D~G~Y~C~~~~-~~~~~-~~~~l~V~~~~~~~  120 (222)
T 3sbw_C           86 DVKLQDAGVYRCMISY-GGADY-KRITVKVNAPYNKI  120 (222)
T ss_dssp             SCCGGGCEEEEEEEES-SSEEE-EEEEEEEEBCCCCC
T ss_pred             CcccccCeEEEEEEEe-CCCce-eEEEEEEECCCCCC
Confidence            8899999999999999 66664 58899998766544

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=98.98  E-value=5.9e-09  Score=72.00  Aligned_cols=79  Identities=16%  Similarity=0.316  Sum_probs=53.4

Q ss_pred             CEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC--E---Eeecc-------CCccEEEe-cCCcEEEEEeecCCC
Q psy18191        132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG--S---LVSAE-------IGSHRILL-PAGSLFFLSLVHGKK  198 (238)
Q Consensus       132 P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g--~---~l~~~-------~~~~~~~~-~~~~l~~~~vi~~v~  198 (238)
                      +.+...|..+.+.+|+++.|.|.+.+.+.+.+.|+++.  .   .+...       ...+.... ..+...  +.|..++
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~--L~I~~v~   81 (109)
T 2q20_A            4 IQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFT--FTISSLQ   81 (109)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEE--EEESSCC
T ss_pred             ccEEeeCCEEEecCCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccCCEEE--EEECCCC
Confidence            34555567788999999999999988888899999853  1   12110       01111111 122222  2378889


Q ss_pred             CCCCeEEEEEEEeC
Q psy18191        199 DTDSGVYWCVARNE  212 (238)
Q Consensus       199 ~~d~G~Y~C~a~N~  212 (238)
                      .+|+|.|.|.+.|.
T Consensus        82 ~~DsG~Y~C~~~~~   95 (109)
T 2q20_A           82 PEDIATYYCQQYDN   95 (109)
T ss_dssp             GGGCEEEEEEECSS
T ss_pred             hhhCEEEEEEEeeC
Confidence            99999999999885

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.97  E-value=1.3e-09  Score=86.08  Aligned_cols=84  Identities=17%  Similarity=0.239  Sum_probs=52.3

Q ss_pred             CCceEEeCCCcEEEEEEEeee-CC-CEEEEEeCCE-EeeccCCccEEEecCCcEEE--EEeecCCCCCCCeEEEEEEEeC
Q psy18191        138 PASAVVPRHEPTTLNCKADGY-PE-PRIEWYKDGS-LVSAEIGSHRILLPAGSLFF--LSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~-P~-p~i~W~~~g~-~l~~~~~~~~~~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      +....+.+|+.+.|.|.+.|. |. +.+.|++++. .+....... ....++....  ...|..+.. | |.|+|.|.|.
T Consensus       139 p~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~l~~~~~~~-~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~  215 (242)
T 1hxm_B          139 PSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGN-TMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHE  215 (242)
T ss_dssp             CCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECC-CEECSSSEEEEEEEEECTGGG-G-SCEEEEEEET
T ss_pred             CChhhcccCCCceEEEEEeeEECCCeEEEEEcCCCEeecCccccc-eecCCCcEEEEEEEEEccccC-C-CEEEEEEEeC
Confidence            333445679999999999987 64 7899999986 553210011 1123343322  122443343 4 9999999999


Q ss_pred             CCceeEEEEEEEE
Q psy18191        213 LGFARSKNATLDV  225 (238)
Q Consensus       213 ~G~~~s~~~~L~V  225 (238)
                      .+... ....|.+
T Consensus       216 ~~~~~-~~~~~~~  227 (242)
T 1hxm_B          216 NNKNG-VDQEIIF  227 (242)
T ss_dssp             TSGGG-SCEEEEE
T ss_pred             CCCCC-ceeEeec
Confidence            98874 2555555

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.97  E-value=4.6e-09  Score=82.86  Aligned_cols=95  Identities=16%  Similarity=0.254  Sum_probs=63.1

Q ss_pred             CEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC-----EEeecc-------CCccEEE-ecCCcEEEEEeecCCC
Q psy18191        132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG-----SLVSAE-------IGSHRIL-LPAGSLFFLSLVHGKK  198 (238)
Q Consensus       132 P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g-----~~l~~~-------~~~~~~~-~~~~~l~~~~vi~~v~  198 (238)
                      +.+...|..+.+.+|+++.|.|.+.+.|.|.+.|+++.     ..+...       ...+... ...+...  +.|..+.
T Consensus         5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~--L~I~~v~   82 (250)
T 3esu_F            5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYS--LTISNLE   82 (250)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEE--EEESSCC
T ss_pred             eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEE--EEEccCC
Confidence            34566677788999999999999999999999999853     111110       0111111 1122212  2378889


Q ss_pred             CCCCeEEEEEEEeCCCceeEEEEEEEEccC
Q psy18191        199 DTDSGVYWCVARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       199 ~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~  228 (238)
                      .+|+|.|.|.|.|..+........|.|...
T Consensus        83 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~  112 (250)
T 3esu_F           83 QEDIGTYFCQQGNTLPWTFGGGTKLEIRRG  112 (250)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEEC--
T ss_pred             hhhCEEEEEEEeeCCCceECCCEEEEEECC
Confidence            999999999999987765434567777653

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.95  E-value=3.3e-09  Score=84.79  Aligned_cols=99  Identities=19%  Similarity=0.201  Sum_probs=65.1

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEE-EecCCcEEEEEeecCCCCCCCeEEE
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~-~~~~~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      ...+|.|...|. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+...   ... ........-...|..++.+|+|.|+
T Consensus         4 ~~~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~---~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~   78 (257)
T 1b6u_A            4 VHRKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTL---HLIGEHHDGVSKANFSIGPMMQDLAGTYR   78 (257)
T ss_dssp             -CCCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEE---EEECBCCTTCEEEEEEECSCCTTTCEEEE
T ss_pred             cCCCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcc---eeeeeccCCCceEEEEeecCCcccCEEEE
Confidence            346788877765 67899999999999975 56899999998654321   000 0011111112236778999999999


Q ss_pred             EEEEeCCC----ceeEEEEEEEEccCCCC
Q psy18191        207 CVARNELG----FARSKNATLDVAGKIST  231 (238)
Q Consensus       207 C~a~N~~G----~~~s~~~~L~V~~~~~~  231 (238)
                      |.|.|..+    ...+..+.|.|.+.+.+
T Consensus        79 C~a~~~~~~~~~s~~S~~~~L~V~~~~~~  107 (257)
T 1b6u_A           79 CYGSVTHSPYQLSAPSDPLDIVITGLYEK  107 (257)
T ss_dssp             EEEECSSCTTSCCCCCCCEEEEEECSSCC
T ss_pred             EeEeccCCCccccccCCCEEEecccCCCC
Confidence            99987532    23345788888765433

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.95  E-value=5e-09  Score=80.54  Aligned_cols=91  Identities=16%  Similarity=0.319  Sum_probs=60.3

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeC---CCEEEEEeCC--EEee---c-------cCCccEE-EecCCcEEEEEeecCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYP---EPRIEWYKDG--SLVS---A-------EIGSHRI-LLPAGSLFFLSLVHGK  197 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P---~p~i~W~~~g--~~l~---~-------~~~~~~~-~~~~~~l~~~~vi~~v  197 (238)
                      +.. |..+.+.+|+++.|.|.+.|.|   .|.+.|++++  ..+.   .       ....+.. ....+...  +.|..+
T Consensus         4 v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--L~I~~v   80 (212)
T 1q0x_L            4 VTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAA--LTITGA   80 (212)
T ss_dssp             EEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEE--EEESSC
T ss_pred             EEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEE--EEECCC
Confidence            444 6778899999999999999887   4789999852  2221   0       0011211 11222222  237888


Q ss_pred             CCCCCeEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191        198 KDTDSGVYWCVARNELGFARSKNATLDVAG  227 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~  227 (238)
                      +.+|+|.|.|.|.|..|......+.|.|..
T Consensus        81 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  110 (212)
T 1q0x_L           81 QTEDEAIYFCALWSNNKLVFGGGTKLTVLG  110 (212)
T ss_dssp             CGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred             CccCCEEEEEEEecCchhhcCCCeEEEEec
Confidence            999999999999998875433355677753

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.95  E-value=2.1e-09  Score=81.46  Aligned_cols=77  Identities=17%  Similarity=0.321  Sum_probs=60.0

Q ss_pred             CCCceEEeCCCcEEEEEE-EeeeCC-CEEEEEeCCEEeeccCCccEEE-ecCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191        137 HPASAVVPRHEPTTLNCK-ADGYPE-PRIEWYKDGSLVSAEIGSHRIL-LPAGSLFFLSLVHGKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~-~~g~P~-p~i~W~~~g~~l~~~~~~~~~~-~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~  213 (238)
                      .+..+.+.+|+.+.|.|. +.+.|. +.+.|++++..+.......... ..++.|.    |..++.+|+|.|+|.+.|..
T Consensus        14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~----i~~v~~~d~G~Y~C~~~~~~   89 (201)
T 3s97_C           14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLY----IANVEASDKGNYSCFVSSPS   89 (201)
T ss_dssp             CCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEE----ESSCCGGGCEEEEEEEEEGG
T ss_pred             CCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEE----ECcCCcccCeEEEEEEEecC
Confidence            356788999999999999 899999 9999999998775332333333 3456665    56669999999999999987


Q ss_pred             Ccee
Q psy18191        214 GFAR  217 (238)
Q Consensus       214 G~~~  217 (238)
                      +...
T Consensus        90 ~~~~   93 (201)
T 3s97_C           90 ITKS   93 (201)
T ss_dssp             GTEE
T ss_pred             CCcc
Confidence            6653

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.95  E-value=5.4e-09  Score=82.38  Aligned_cols=95  Identities=19%  Similarity=0.302  Sum_probs=61.8

Q ss_pred             EEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC--E---Eeecc-------CCccEEEe-cCCcEEEEEeecCCCC
Q psy18191        133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG--S---LVSAE-------IGSHRILL-PAGSLFFLSLVHGKKD  199 (238)
Q Consensus       133 ~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g--~---~l~~~-------~~~~~~~~-~~~~l~~~~vi~~v~~  199 (238)
                      .+...|..+.+.+|+++.|.|.+.+.|.|.+.|+++.  .   .+...       ...+.... .++...  +.|..++.
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--L~I~~v~~   80 (242)
T 2znx_A            3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFT--LSINSVET   80 (242)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEE--EEESSCCG
T ss_pred             cEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEE--EEECCCCh
Confidence            3555677889999999999999999999999999853  1   11110       01111111 122222  23788899


Q ss_pred             CCCeEEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        200 TDSGVYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       200 ~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      +|+|.|.|.|.|..+...+..+.|.|..++
T Consensus        81 ~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~  110 (242)
T 2znx_A           81 EDFGMYFCQQSNSXPYTFGGGTKLEITGGG  110 (242)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             HHCEEEEEeEecCCceEECCCEEEEEcCCC
Confidence            999999999999866432235677876654

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.94  E-value=2.5e-09  Score=85.48  Aligned_cols=131  Identities=14%  Similarity=0.163  Sum_probs=58.9

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCccc------CCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEE
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQK------GLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKA  155 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~------G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~  155 (238)
                      .|.|.++..+|+|.|.|...+....      +........ ....+. +......+|.+...+....+..|+.+.|.|.+
T Consensus        80 sL~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~-~~t~L~-V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~  157 (257)
T 3bn9_D           80 YLQMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWG-QGTMVT-VSSASTKGPSVFPLAPSSKSTSGGTAALGCLV  157 (257)
T ss_dssp             EEEEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEEC-CCEEEE-ECSSCCBCCEECCCCC-----------CCCEE
T ss_pred             EEEECCCChhhCEEEEEEEecCCCcccccccccceeeeeC-CcEEEE-ecCCCCcCCcEEEecCcccccCCCcEEEEEEE
Confidence            5677777778888887665542100      000000000 001111 11111245776544333345789999999999


Q ss_pred             eee-CCC-EEEEEeCCEEeeccCCccEEEecCCcEEEE--EeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        156 DGY-PEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFFL--SLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       156 ~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~--~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      .|. |.| .+.|++++..+...... .....++...+.  ..|..+...| |.|+|.|.|.....
T Consensus       158 ~g~~P~pi~v~W~k~g~~~~~~~~~-~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~  220 (257)
T 3bn9_D          158 KDYFPEPVTVSWNSGALTSGVHTFP-AVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  220 (257)
T ss_dssp             EEEBSSCCEEEETTTTCCSSCEECC-CEECTTSCEEEEEECCCC--------CEEEEEEEGGGTE
T ss_pred             eeEECCCcEEEEeeCCCcCCcEecC-CeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCc
Confidence            986 877 99999998764321011 112234443332  2244445567 99999999966443

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.94  E-value=1.2e-09  Score=84.88  Aligned_cols=91  Identities=24%  Similarity=0.372  Sum_probs=65.5

Q ss_pred             CCCceEEeCCCcEEEEEEEeeeCC-CEEEEEeCCEE-----eec---cCC--ccEE-----------EecCCcEEEEEee
Q psy18191        137 HPASAVVPRHEPTTLNCKADGYPE-PRIEWYKDGSL-----VSA---EIG--SHRI-----------LLPAGSLFFLSLV  194 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~P~-p~i~W~~~g~~-----l~~---~~~--~~~~-----------~~~~~~l~~~~vi  194 (238)
                      .|.++.+.+|+++.|.|.+.+.|. +.+.|++++..     +..   ...  ..+.           ...++.|.    |
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~----i   81 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLV----L   81 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEE----E
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEE----E
Confidence            356788899999999999999985 89999975432     110   000  1122           23345544    6


Q ss_pred             cCCCCCCCeEEEEEEEeCC-CceeEEEEEEEEccCCCCC
Q psy18191        195 HGKKDTDSGVYWCVARNEL-GFARSKNATLDVAGKISTA  232 (238)
Q Consensus       195 ~~v~~~d~G~Y~C~a~N~~-G~~~s~~~~L~V~~~~~~~  232 (238)
                      ..++.+|+|.|+|.|.|.. |... ..+.|.|..++..+
T Consensus        82 ~~v~~~D~G~Y~C~~~~~~~~~~~-~~~~l~V~~~p~~~  119 (231)
T 2pet_A           82 AEAQVGDERDYVCVVRAGAAGTAE-ATARLNVFAKPEAT  119 (231)
T ss_dssp             SSCCGGGCEEEEEEEECGGGCEEE-EEEEEEEEBCCCCC
T ss_pred             cccCcccCceEEEEEEecCCCceE-EEEEEEEEecCCCc
Confidence            7779999999999999998 7665 68999998776543

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=98.93  E-value=2.9e-09  Score=84.54  Aligned_cols=127  Identities=14%  Similarity=0.139  Sum_probs=71.1

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceeccee-cCCccCCEEEeC-CCceEEeCCCcEEEEEEEeee-
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVH-GDGYRVPRITEH-PASAVVPRHEPTTLNCKADGY-  158 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~-~~v~~~P~i~~~-~~~~~~~~G~~~~L~C~~~g~-  158 (238)
                      .|.|.++..+|+|.|.|...+... . .. .+.  ....+.+.. .....+|.+... +....+.+|+.+.|.|.+.|. 
T Consensus        77 ~L~I~~v~~~D~G~Y~C~~~~~~~-~-~~-~~~--~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~  151 (252)
T 1oga_E           77 PLTVTSAQKNPTAFYLCASSSRSS-Y-EQ-YFG--PGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFY  151 (252)
T ss_dssp             CEEECSCCSCCCEEEEEEEESSTT-S-CC-EEC--CCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEB
T ss_pred             EEEECcCChhhCEEEEEEEecCCc-c-ce-eEC--CCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEc
Confidence            466677777777777765544200 0 00 000  001111100 112357777653 444445579999999999986 


Q ss_pred             CCC-EEEEEeCCEEeeccCCccEEE---------ecCCcEEEEEe--ecCCCC-CCCeEEEEEEEeCCCce
Q psy18191        159 PEP-RIEWYKDGSLVSAEIGSHRIL---------LPAGSLFFLSL--VHGKKD-TDSGVYWCVARNELGFA  216 (238)
Q Consensus       159 P~p-~i~W~~~g~~l~~~~~~~~~~---------~~~~~l~~~~v--i~~v~~-~d~G~Y~C~a~N~~G~~  216 (238)
                      |.+ .+.|+++|..+...   ....         ..++.+.+...  |..... .|.|.|+|.+.|.....
T Consensus       152 P~~~~v~W~~~g~~l~~~---~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~  219 (252)
T 1oga_E          152 PDHVELSWWVNGKEVHSG---VSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  219 (252)
T ss_dssp             SSCEEEEEEETTEEECSS---EEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred             CCCcEEEEEECCEECCCC---cccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence            654 89999999988642   1110         13444433221  222232 25789999999987554

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=98.93  E-value=9.7e-09  Score=72.22  Aligned_cols=78  Identities=21%  Similarity=0.344  Sum_probs=52.9

Q ss_pred             EEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC-----EEeecc-------CCccEEE-ecCCcEEEEEeecCCCC
Q psy18191        133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG-----SLVSAE-------IGSHRIL-LPAGSLFFLSLVHGKKD  199 (238)
Q Consensus       133 ~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g-----~~l~~~-------~~~~~~~-~~~~~l~~~~vi~~v~~  199 (238)
                      .+...|..+.+.+|++++|.|.+.+.+.+.+.|++..     ..+...       ...+... ...+...  +.|..++.
T Consensus         5 ~v~q~p~~v~v~~G~~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~--L~I~~v~~   82 (119)
T 2e27_L            5 QMTQSPSSLSASLGGKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSGRDYS--FSISNLEP   82 (119)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEE--EEECSCCG
T ss_pred             eeEecCCeEEEeCCCCEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccCCEEE--EEECCCCh
Confidence            4555567788999999999999998888899999852     112111       0111111 1122222  23788899


Q ss_pred             CCCeEEEEEEEeC
Q psy18191        200 TDSGVYWCVARNE  212 (238)
Q Consensus       200 ~d~G~Y~C~a~N~  212 (238)
                      +|+|.|.|.+.|.
T Consensus        83 ~DsG~Y~C~~~~~   95 (119)
T 2e27_L           83 EDAATYYCLQYDN   95 (119)
T ss_dssp             GGCEEEEEEECGG
T ss_pred             HHCEEEEEEEccC
Confidence            9999999999985

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=98.92  E-value=1.4e-09  Score=85.80  Aligned_cols=139  Identities=13%  Similarity=0.191  Sum_probs=76.7

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcc---cCCce----EEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEE
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQ---KGLPL----KKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNC  153 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~---~G~y~----c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C  153 (238)
                      ..|.|.++..+|+|.|.|...+...   .+.+.    -.+.  ....+. +......+|.+...+....+..|+.+.|.|
T Consensus        86 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~--~~t~l~-V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C  162 (239)
T 3tv3_H           86 VFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWG--RGTLVT-VSSASTKGPSVFPLAPSSKSTSGGTAALGC  162 (239)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEEC--CCEEEE-ECCCCCBCCEEEEECCCCCC--TTEEEEEE
T ss_pred             EEEEECCCChhhCEEEEEEEecCccccccccccccceeeeC--CCcEEe-eccCCCcCCEEEEECCChhhccCCcEEEEE
Confidence            3577888888888888876543210   00000    0111  111111 111234567776444444455799999999


Q ss_pred             EEeee-CCC-EEEEEeCCEEeeccCCccEEEecCCcEEEE--EeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        154 KADGY-PEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFFL--SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       154 ~~~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~--~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      .+.|. |.+ .+.|++++..+...... .....++...+.  ..|......| |.|+|.+.|..+... ....|.+
T Consensus       163 ~~~~~~p~~~~v~W~~~g~~~~~~~~~-~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~-~~~~l~~  235 (239)
T 3tv3_H          163 LVKDYFPEPVTVSWNSGALTSGVHTFP-AVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK-VDKRVEP  235 (239)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCTTEEECC-CEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEE-EEEECCC
T ss_pred             EEeeEeCCCeEEEEEECCccCceEecC-ceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCce-EEEEecc
Confidence            99884 544 48899988643221111 112234433321  2245556677 999999999987764 3555554

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.92  E-value=2.3e-09  Score=81.74  Aligned_cols=89  Identities=24%  Similarity=0.343  Sum_probs=62.8

Q ss_pred             ceEEeCCCcEEEEEEEe----eeCCCEEEEEeCCEEeeccCC----------ccEEE-e-cCCcEEEEEeecCCCCCCCe
Q psy18191        140 SAVVPRHEPTTLNCKAD----GYPEPRIEWYKDGSLVSAEIG----------SHRIL-L-PAGSLFFLSLVHGKKDTDSG  203 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~----g~P~p~i~W~~~g~~l~~~~~----------~~~~~-~-~~~~l~~~~vi~~v~~~d~G  203 (238)
                      .+.+.+|+++.|.|.+.    +.|.+.+.|++++..+.....          .+... . .+..|.    |..++.+|+|
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~----I~~v~~~D~G   78 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIV----ILALRPSDEG   78 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEE----ECSCCGGGCE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEE----EecccchhCe
Confidence            46788999999999984    557899999999987631100          11111 1 223454    6677999999


Q ss_pred             EEEEEEEeCCCcee----EEEEEEEEccCCCCC
Q psy18191        204 VYWCVARNELGFAR----SKNATLDVAGKISTA  232 (238)
Q Consensus       204 ~Y~C~a~N~~G~~~----s~~~~L~V~~~~~~~  232 (238)
                      .|.|.|.|..|...    ...+.|.|..++..|
T Consensus        79 ~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p  111 (201)
T 1dr9_A           79 TYECVVLKYEKDAFKREHLAEVTLSVKADFPTP  111 (201)
T ss_dssp             EEEEEEEECCTTSCEEEEEEEEEEEEECCCCCC
T ss_pred             EEEEEEEcCCCCccccccccEEEEEEcCCCCCC
Confidence            99999999887653    247788887765443

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.92  E-value=6.6e-09  Score=81.38  Aligned_cols=94  Identities=19%  Similarity=0.309  Sum_probs=63.2

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeC----CCEEEEEeCC--EE---eecc-------CCccEEEe-cCCcEEEEEeecC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYP----EPRIEWYKDG--SL---VSAE-------IGSHRILL-PAGSLFFLSLVHG  196 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P----~p~i~W~~~g--~~---l~~~-------~~~~~~~~-~~~~l~~~~vi~~  196 (238)
                      +...|..+.+.+|+++.|.|.+.+.|    .|.+.|+++.  ..   +...       ...+.... .++...  +.|..
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--L~I~~   81 (240)
T 1moe_A            4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFT--LIIDP   81 (240)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEE--EEESS
T ss_pred             eEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEE--EEEcC
Confidence            45567778899999999999999988    7889999852  21   1110       01111111 122222  23788


Q ss_pred             CCCCCCeEEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        197 KKDTDSGVYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      ++.+|+|.|.|.|.|..+...+..+.|.|...+
T Consensus        82 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~  114 (240)
T 1moe_A           82 VEADDVATYYCQQTNEDPYTFGGGTKLEIKGGG  114 (240)
T ss_dssp             CCGGGCEEEEEEECSSSSCCBCCCEEEEECCCS
T ss_pred             CChhhCEEEEEEEccCCceeecCCEEEEEecCC
Confidence            899999999999999877633346678887654

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=98.91  E-value=5.8e-09  Score=71.89  Aligned_cols=79  Identities=22%  Similarity=0.308  Sum_probs=52.6

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC-----EEeecc------CCccEEEec-CCcEEEEEeecCCCCCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG-----SLVSAE------IGSHRILLP-AGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g-----~~l~~~------~~~~~~~~~-~~~l~~~~vi~~v~~~d  201 (238)
                      +...|..+.+.+|+++.|.|.+.+.+.+.+.|++..     ..+...      ....++... .+. ...+.|..++.+|
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~-~~~L~I~~v~~~D   82 (108)
T 1qfw_M            4 LTQSPKSMSMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSAT-DFTLTISSVQAED   82 (108)
T ss_dssp             EEEECSCEECCTTCCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCSS-EEEEEESSCCTTC
T ss_pred             EEEeCCeEEEcCCCCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCCC-EEEEEECCCChhh
Confidence            344566788999999999999988888899999853     122111      001122221 221 1223378889999


Q ss_pred             CeEEEEEEEeCC
Q psy18191        202 SGVYWCVARNEL  213 (238)
Q Consensus       202 ~G~Y~C~a~N~~  213 (238)
                      +|.|.|.+.|..
T Consensus        83 sG~Y~C~~~~~~   94 (108)
T 1qfw_M           83 FADYHCGQTYNH   94 (108)
T ss_dssp             CSEEEEEECSSS
T ss_pred             CEEEEEEEccCC
Confidence            999999999853

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=98.90  E-value=1.2e-08  Score=70.85  Aligned_cols=79  Identities=14%  Similarity=0.297  Sum_probs=51.3

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC--EE---eec-----cCCccEEEecCC--cEEEEEeecCCCCCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG--SL---VSA-----EIGSHRILLPAG--SLFFLSLVHGKKDTDS  202 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g--~~---l~~-----~~~~~~~~~~~~--~l~~~~vi~~v~~~d~  202 (238)
                      ...|..+.+.+|+++.|.|.+.+.+ +.+.|+++.  ..   +..     ....+.....+.  .....+.|..++.+|+
T Consensus         5 ~q~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~Ds   83 (113)
T 1h5b_A            5 EQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDS   83 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGC
T ss_pred             EECCCEEEEecCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChhhC
Confidence            3446678899999999999998765 789999853  11   110     001112222111  1112233788899999


Q ss_pred             eEEEEEEEeCCC
Q psy18191        203 GVYWCVARNELG  214 (238)
Q Consensus       203 G~Y~C~a~N~~G  214 (238)
                      |.|.|.+.|..|
T Consensus        84 G~Y~C~~~n~~~   95 (113)
T 1h5b_A           84 GTYFCAAEASSG   95 (113)
T ss_dssp             EEEEEEEECSSS
T ss_pred             EEEEEEEecCCC
Confidence            999999999876

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.90  E-value=5.2e-09  Score=84.15  Aligned_cols=97  Identities=14%  Similarity=0.236  Sum_probs=63.1

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCE-----Eeecc-------CCccEEEe-cCCcEEEEEeecCC
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGS-----LVSAE-------IGSHRILL-PAGSLFFLSLVHGK  197 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~-----~l~~~-------~~~~~~~~-~~~~l~~~~vi~~v  197 (238)
                      .+.+...|..+.+.+|+++.|.|.+.+.|.|.+.|++++.     .+...       ...+.... .++...  +.|..+
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--L~I~~v   89 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFT--LTISSL   89 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEE--EEESSC
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEE--EEEccC
Confidence            4556667788899999999999999999999999998541     22110       01111111 122222  237888


Q ss_pred             CCCCCeEEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        198 KDTDSGVYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      +.+|+|.|.|.|.|..+...+..+.|.|...+
T Consensus        90 ~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~  121 (276)
T 3auv_A           90 QPEDFATYYCQQHYTTPPTFGCGTKVEIKGGG  121 (276)
T ss_dssp             CGGGCEEEEEEECSSSSCCCCCCEEEEC----
T ss_pred             ChhhCEEEEEEEecCCcccccCCEEEEEecCC
Confidence            99999999999999876532234567776543

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=98.90  E-value=1.5e-08  Score=70.29  Aligned_cols=78  Identities=23%  Similarity=0.354  Sum_probs=51.7

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeee--CCCEEEEEeC--CE---EeeccCCccEE-EecCCcEEEEEeecCCCCCCCeEE
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGY--PEPRIEWYKD--GS---LVSAEIGSHRI-LLPAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~--P~p~i~W~~~--g~---~l~~~~~~~~~-~~~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                      +...|..+.+.+|+++.|.|.+.+.  |.+.+.|+++  +.   .+... ..+.. ....+.....+.|..++.+|+|.|
T Consensus         3 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y   81 (111)
T 2ywz_A            3 VDQTPRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISI-GGRYDETVDKGSKSFSLRISDLRVEDSGTY   81 (111)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCS-BTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             eEECCCcEEEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceEeeEe-CCCEEEEEeCCCCEEEEEECCCChhcCEEE
Confidence            4455677889999999999999876  5789999985  22   12111 12221 111111122233788899999999


Q ss_pred             EEEEEeC
Q psy18191        206 WCVARNE  212 (238)
Q Consensus       206 ~C~a~N~  212 (238)
                      .|.+.|.
T Consensus        82 ~C~~~~~   88 (111)
T 2ywz_A           82 KCQADYS   88 (111)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcC
Confidence            9999993

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=98.90  E-value=1.1e-08  Score=70.40  Aligned_cols=78  Identities=21%  Similarity=0.406  Sum_probs=52.2

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC--E---Eeecc-------CCccEEEe-cCCcEEEEEeecCCCCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG--S---LVSAE-------IGSHRILL-PAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g--~---~l~~~-------~~~~~~~~-~~~~l~~~~vi~~v~~~  200 (238)
                      +...|..+.+.+|++++|.|.+.+.+.+.+.|++..  .   .+...       ...+.... ..+...  +.|..++.+
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~--L~I~~v~~~   81 (107)
T 1i8k_A            4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFV--FTIENTLSE   81 (107)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEE--EEESSCCGG
T ss_pred             eEeCCCeEEecCCCCEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccCCEEE--EEECCCCHH
Confidence            344566788899999999999988888899999853  1   12110       01111111 222222  237888999


Q ss_pred             CCeEEEEEEEeCC
Q psy18191        201 DSGVYWCVARNEL  213 (238)
Q Consensus       201 d~G~Y~C~a~N~~  213 (238)
                      |+|.|.|.+.|..
T Consensus        82 DsG~Y~C~~~~~~   94 (107)
T 1i8k_A           82 DVGDYYCLQSFNV   94 (107)
T ss_dssp             GCEEEEEEECSSS
T ss_pred             HCEEEEEEEeeCC
Confidence            9999999998853

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.89  E-value=1.4e-09  Score=84.01  Aligned_cols=83  Identities=10%  Similarity=0.088  Sum_probs=56.8

Q ss_pred             CCceEEeCC--CcEEEEEEEeeeCCCEEEEEeC---CEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        138 PASAVVPRH--EPTTLNCKADGYPEPRIEWYKD---GSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       138 ~~~~~~~~G--~~~~L~C~~~g~P~p~i~W~~~---g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      |..+.+.+|  +++.|.|.+.+ |.|.+.|+++   +..+...  ........+.|.    |..++.+|+|.|+|.|.|.
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~--~~~~~~~~~~l~----I~~v~~~D~G~Y~C~a~n~   86 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDG--NRISWDSKKGFT----IPSYMISYAGMVFCEAKIN   86 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCS--SSCEEETTTEEE----EEGGGTTTCSEEEEEEC--
T ss_pred             ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCC--CcccccCCccEE----EccCChhcCceEEEEEEEC
Confidence            467888999  99999999976 7799999884   6555432  222223445565    4555999999999999996


Q ss_pred             CCceeEEEEEEEEcc
Q psy18191        213 LGFARSKNATLDVAG  227 (238)
Q Consensus       213 ~G~~~s~~~~L~V~~  227 (238)
                      .+...+..+.|.|..
T Consensus        87 ~~~~~s~~~~l~v~~  101 (213)
T 2x1w_L           87 DESYQSIMYIVVVVG  101 (213)
T ss_dssp             --CEECCCEEEEECB
T ss_pred             CeeEEEEEEEEEEeC
Confidence            665544347777744

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=98.89  E-value=4.9e-09  Score=80.89  Aligned_cols=146  Identities=18%  Similarity=0.171  Sum_probs=86.1

Q ss_pred             CCCccEEEeccccccccce-----------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQG-----------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGY  129 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g-----------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~  129 (238)
                      .|.+.+.|++++..+....           ...|.+.++...|.|.|+|.+.|...  .....        .........
T Consensus        45 ~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g--~~~~~--------~~l~v~~~P  114 (215)
T 3mtr_A           45 YPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIG--QESLE--------FILVQADTP  114 (215)
T ss_dssp             ESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSC--EEEEE--------EEEEECCCC
T ss_pred             cCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCC--ceEEE--------EEEEECCCC
Confidence            4567899999988554331           34678889999999999988877533  11111        111111122


Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEE----eeeCCC--EEEEEeCCEEeeccCCccEEEec----CCcEEEEEeecCCCC
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKA----DGYPEP--RIEWYKDGSLVSAEIGSHRILLP----AGSLFFLSLVHGKKD  199 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~----~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~----~~~l~~~~vi~~v~~  199 (238)
                      .+|....    . ...+..+.|.|..    .|.|.+  .+.|.+++.....   .......    ...+.    |..+..
T Consensus       115 ~~p~~~~----~-~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~---~~~~~~~~~~~~~~l~----i~~L~~  182 (215)
T 3mtr_A          115 SSPSIDQ----V-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWH---SKWYDAKEASMEGIVT----IVGLKP  182 (215)
T ss_dssp             CCCEEEE----E-EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCE---EEEEEHHHHHHHTEEE----EECCCT
T ss_pred             CCCcceE----E-EEecceEEEEEecCCccCCCceEEEEEEEEECCCCccc---ccccccccccccccEE----ECCCCC
Confidence            2333221    1 2345678888863    233444  3778887643211   0111111    14455    455599


Q ss_pred             CCCeEEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        200 TDSGVYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       200 ~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      .|.|.|.|.|.|.+|.... +..+.|..++
T Consensus       183 ~~~y~~~~~A~N~~G~s~~-S~~~~v~T~p  211 (215)
T 3mtr_A          183 ETTYAVRLAALNGKGLGEI-SAASEFKTQP  211 (215)
T ss_dssp             TCEEEEEEEEEESSCBCCC-CCCEEEECCC
T ss_pred             CCEEEEEEEEEeCCcccCc-ccceeeEecc
Confidence            9999999999999999863 5666665543

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=98.88  E-value=9.7e-09  Score=72.88  Aligned_cols=83  Identities=23%  Similarity=0.319  Sum_probs=56.1

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCC---CEEEEEeCCEE-----------eeccC----CccEEEecC----C--cEEEEEe
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPE---PRIEWYKDGSL-----------VSAEI----GSHRILLPA----G--SLFFLSL  193 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~---p~i~W~~~g~~-----------l~~~~----~~~~~~~~~----~--~l~~~~v  193 (238)
                      +..+....|+++.|.|.....+.   ..+.|+|++..           .....    ..+.....+    +  +|.    
T Consensus        12 ~~~v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~----   87 (125)
T 4gos_A           12 TVASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLR----   87 (125)
T ss_dssp             EECEEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEE----
T ss_pred             CceEEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEE----
Confidence            34577789999999999854433   36999986421           11000    111111111    1  343    


Q ss_pred             ecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        194 VHGKKDTDSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       194 i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      |.+++.+|+|.|.|.+.|..|..+ ..+.|.|
T Consensus        88 I~~v~~~D~G~Y~C~v~~~~g~~~-~~v~LkV  118 (125)
T 4gos_A           88 LKNVQLTDAGTYKCYIITSKGKGN-ANLEYKT  118 (125)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEE-EEEEEEE
T ss_pred             ECCCChHHCEEEEEEEEeCCCeEE-EEEEEEE
Confidence            778899999999999999999997 5999987

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=98.88  E-value=5.5e-09  Score=74.67  Aligned_cols=90  Identities=24%  Similarity=0.360  Sum_probs=60.2

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEee---eCCCEEEEEeCCEE-----eec------------c---------CC-ccEEEe
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADG---YPEPRIEWYKDGSL-----VSA------------E---------IG-SHRILL  183 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g---~P~p~i~W~~~g~~-----l~~------------~---------~~-~~~~~~  183 (238)
                      +...+..+.+.+|+++.|.|.+.+   .+.+.+.|++++..     +..            .         .. ..+..+
T Consensus         7 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~   86 (135)
T 1xt5_A            7 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   86 (135)
T ss_dssp             EECSCSEEEEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEE
T ss_pred             EeCCCceEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEE
Confidence            344556788999999999999753   67889999986432     110            0         00 012222


Q ss_pred             c---CCcEEEEEeecCCCCCCCeEEEEEEEeC-----CCceeEEEEEEEEccC
Q psy18191        184 P---AGSLFFLSLVHGKKDTDSGVYWCVARNE-----LGFARSKNATLDVAGK  228 (238)
Q Consensus       184 ~---~~~l~~~~vi~~v~~~d~G~Y~C~a~N~-----~G~~~s~~~~L~V~~~  228 (238)
                      .   ...|.    |..++.+|+|.|.|.+.|.     +|... ..+.|.|.+.
T Consensus        87 ~~~~~~sL~----I~~v~~~D~G~Y~C~v~~~~~~~~~g~~~-~~~~L~V~g~  134 (135)
T 1xt5_A           87 ANLAAPTLR----LTHVHPQDGGRYWCQVAQWSIRTEFGLDA-KSVVLKVTGH  134 (135)
T ss_dssp             SCTTSCCEE----ECSCCGGGCEEEEEEEECSSCCSGGGEEE-EEEEEEEETT
T ss_pred             ecCCCCeEE----ECCCChhhCcEEEEEEEcCCccccccccc-eeEEEEEecC
Confidence            1   13344    6777999999999999995     45554 5888988764

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.88  E-value=1.5e-08  Score=79.75  Aligned_cols=89  Identities=18%  Similarity=0.252  Sum_probs=61.9

Q ss_pred             CCCceEEeCCCcEEEEEEEeeeCCCE-----EEEEeCCEEee------ccCCccEEEec-------------CCcEEEEE
Q psy18191        137 HPASAVVPRHEPTTLNCKADGYPEPR-----IEWYKDGSLVS------AEIGSHRILLP-------------AGSLFFLS  192 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~P~p~-----i~W~~~g~~l~------~~~~~~~~~~~-------------~~~l~~~~  192 (238)
                      .|..+.+.+|+++.|.|.+.|.|.+.     +.|++++....      ...........             +..|.   
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~---   85 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLR---   85 (248)
T ss_dssp             TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEE---
T ss_pred             CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEE---
Confidence            35567889999999999999998886     99998632111      00001111111             11243   


Q ss_pred             eecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCCC
Q psy18191        193 LVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       193 vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~  230 (238)
                       |..++.+|+|.|+|.+.|..|... ..+.|.|..+|.
T Consensus        86 -I~~v~~~D~G~Y~C~~~~~~~~~~-~~~~L~V~~~P~  121 (248)
T 3pv7_A           86 -LPGIQLEEAGEYRCEVVVTPLKAQ-GTVQLEVVASPA  121 (248)
T ss_dssp             -ESSCCGGGCEEEEEEEEETTEEEE-EEEEEEEEBCCE
T ss_pred             -eCCCCHHHCeEEEEEEEeCCccce-eEEEEEEecCCc
Confidence             677799999999999999998875 588999877543

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.87  E-value=7.7e-09  Score=79.37  Aligned_cols=84  Identities=19%  Similarity=0.306  Sum_probs=56.0

Q ss_pred             ceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEEee---cc-------CCccEE-EecCCcEEEEEeecCCCCCCCeEEE
Q psy18191        140 SAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSLVS---AE-------IGSHRI-LLPAGSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~l~---~~-------~~~~~~-~~~~~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      .+.+.+|+++.|.|.+.  |.+.+.|+++  +..+.   ..       ...+.. ....+...+  .|..++.+|+|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L--~I~~v~~~D~G~Y~   84 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASL--TVSGLQTDDEAVYY   84 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEE--EEESCCGGGCEEEE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEE--EECCCChhHCEEEE
Confidence            67889999999999998  8899999984  22211   00       011111 112222222  26777999999999


Q ss_pred             EEEEeCCC-ceeEEEEEEEEcc
Q psy18191        207 CVARNELG-FARSKNATLDVAG  227 (238)
Q Consensus       207 C~a~N~~G-~~~s~~~~L~V~~  227 (238)
                      |.|.|..| ......+.|.|..
T Consensus        85 C~~~~~~~~~~~~~~~~l~V~~  106 (211)
T 3tv3_L           85 CGSLVGNWDVIFGGGTKLTVLG  106 (211)
T ss_dssp             EEEEETTTEEEECCCEEEEECC
T ss_pred             EEEecCCCceeECCCceEEEeC
Confidence            99999998 2323467888874

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.87  E-value=1.4e-08  Score=88.86  Aligned_cols=87  Identities=11%  Similarity=0.025  Sum_probs=55.9

Q ss_pred             cCCEEEe-CCCceEEeCCCcEEEEEEEeeeCCC--EEEEEeCCEEeeccCC-ccEEEecCCcEEE--EEeecCCCCCCCe
Q psy18191        130 RVPRITE-HPASAVVPRHEPTTLNCKADGYPEP--RIEWYKDGSLVSAEIG-SHRILLPAGSLFF--LSLVHGKKDTDSG  203 (238)
Q Consensus       130 ~~P~i~~-~~~~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~--~~vi~~v~~~d~G  203 (238)
                      .+|.+.. .|....+.+|+.+.|.|.+.|.+++  .|+|+++|..+..... .......+|+...  .+.|..+...|.|
T Consensus       295 ~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g  374 (512)
T 1zvo_C          295 QPLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGT  374 (512)
T ss_pred             CCCEEEEECCChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCC
Confidence            3455543 3444556789999999999887443  8999999987652101 1111122343221  1224555788999


Q ss_pred             EEEEEEEeCCCce
Q psy18191        204 VYWCVARNELGFA  216 (238)
Q Consensus       204 ~Y~C~a~N~~G~~  216 (238)
                      .|+|.|.|..+..
T Consensus       375 ~y~C~a~n~~~~~  387 (512)
T 1zvo_C          375 SVTCTLNHPSLPP  387 (512)
T ss_pred             eEEEEEEeCCCCC
Confidence            9999999998754

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.86  E-value=4.1e-09  Score=80.93  Aligned_cols=86  Identities=19%  Similarity=0.166  Sum_probs=57.3

Q ss_pred             CceEEeCCCcEEEEEEEeeeCCCE---EEEEeCCEEeecc--------------CCccEEE----------ecCCcEEEE
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEPR---IEWYKDGSLVSAE--------------IGSHRIL----------LPAGSLFFL  191 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p~---i~W~~~g~~l~~~--------------~~~~~~~----------~~~~~l~~~  191 (238)
                      ..+.+..|+++.|.|.+.+.|.+.   +.|+|++..+...              .......          ..+++|.  
T Consensus         9 ~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~--   86 (225)
T 4fmk_A            9 PEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLA--   86 (225)
T ss_dssp             SEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEE--
T ss_pred             CEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEE--
Confidence            346678999999999999887764   8999976443210              0000000          1123454  


Q ss_pred             EeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccC
Q psy18191        192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       192 ~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~  228 (238)
                        |..++.+|+|.|.|.|.|..|........+.+..+
T Consensus        87 --I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~  121 (225)
T 4fmk_A           87 --FRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQ  121 (225)
T ss_dssp             --ECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC
T ss_pred             --EccCCHHHCcceEEEEEeCCCcceeeeeeeeeecC
Confidence              66779999999999999998877544555555443

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=98.86  E-value=8.4e-09  Score=73.22  Aligned_cols=98  Identities=19%  Similarity=0.317  Sum_probs=61.1

Q ss_pred             EEEeCCCceEEeCCCcEEEEEEEeeeC----CCEEEEEeCC-----EEeecc-------CCccEEE-ecCCcEEEEEeec
Q psy18191        133 RITEHPASAVVPRHEPTTLNCKADGYP----EPRIEWYKDG-----SLVSAE-------IGSHRIL-LPAGSLFFLSLVH  195 (238)
Q Consensus       133 ~i~~~~~~~~~~~G~~~~L~C~~~g~P----~p~i~W~~~g-----~~l~~~-------~~~~~~~-~~~~~l~~~~vi~  195 (238)
                      .+...|..+.+.+|++++|.|.+.+.+    .+.+.|++..     ..+...       ...+... ...+...  +.|.
T Consensus         3 ~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~s--L~I~   80 (126)
T 4ffy_L            3 VLTQSPASLAVSLGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSETDFT--LTID   80 (126)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEE--EEES
T ss_pred             cEEeCCCeEEEeCCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecCCCEEE--EEEC
Confidence            355556778899999999999998776    5679999842     112110       0111111 1222222  3378


Q ss_pred             CCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCCCCC
Q psy18191        196 GKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~~  232 (238)
                      .++.+|+|.|.|.+.|........-..|.|.+..+..
T Consensus        81 ~v~~~DsG~Y~C~~~~~~~~~fg~gT~L~V~~~g~~~  117 (126)
T 4ffy_L           81 SVETDDAATYYCQQNNEDPYTFGGGTKLEIKGGGGSG  117 (126)
T ss_dssp             SCCGGGCEEEEEEECSSSSCEECCCEEEEEEC-----
T ss_pred             CCCHHHCEEEEEEEecCCCcEECCCEEEEEecCCCCC
Confidence            8899999999999998655443345688887765543

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=98.86  E-value=3.9e-09  Score=81.20  Aligned_cols=84  Identities=18%  Similarity=0.216  Sum_probs=55.6

Q ss_pred             CEEEeCCCceEE--eCCCcEEEEEEEeeeCC----CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCC---C
Q psy18191        132 PRITEHPASAVV--PRHEPTTLNCKADGYPE----PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTD---S  202 (238)
Q Consensus       132 P~i~~~~~~~~~--~~G~~~~L~C~~~g~P~----p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d---~  202 (238)
                      |.+...+....+  .+|+++.|.|.+.|.|+    +.+.|++++..+............+|.+.+...+. +...|   .
T Consensus         2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~-i~~~d~~d~   80 (207)
T 1l6x_A            2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLT-VLHQDWLNG   80 (207)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEE-CCHHHHHTT
T ss_pred             CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEE-EEHHHccCC
Confidence            444444333433  78999999999998763    49999999987753211112234456666544322 24455   9


Q ss_pred             eEEEEEEEeCCCce
Q psy18191        203 GVYWCVARNELGFA  216 (238)
Q Consensus       203 G~Y~C~a~N~~G~~  216 (238)
                      |.|+|.|.|..|..
T Consensus        81 g~Y~C~a~n~~~~~   94 (207)
T 1l6x_A           81 KEYKCKVSNKALPA   94 (207)
T ss_dssp             CCEEEEEECTTSSS
T ss_pred             ceEEEEEEcCcCCc
Confidence            99999999998875

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.85  E-value=5.8e-09  Score=82.92  Aligned_cols=97  Identities=16%  Similarity=0.263  Sum_probs=51.7

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CE---EeeccC------------C-ccEEEe--cCCcEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GS---LVSAEI------------G-SHRILL--PAGSLFF  190 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~---~l~~~~------------~-~~~~~~--~~~~l~~  190 (238)
                      +|.+...|..+.+.+|+++.|.|.+.+.|.+.+.|++.  +.   .+....            . ......  ..+..  
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--   79 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNL--   79 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCC--
T ss_pred             ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeE--
Confidence            35666667789999999999999999999999999982  11   111100            0 011111  11111  


Q ss_pred             EEeecCCCCCCCeEEEEEEEeCCCc--eeEEEEEEEEccCC
Q psy18191        191 LSLVHGKKDTDSGVYWCVARNELGF--ARSKNATLDVAGKI  229 (238)
Q Consensus       191 ~~vi~~v~~~d~G~Y~C~a~N~~G~--~~s~~~~L~V~~~~  229 (238)
                      .+.|..++.+|+|.|.|.+.|..|.  .....+.|.|....
T Consensus        80 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~  120 (259)
T 3omz_A           80 RMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQ  120 (259)
T ss_dssp             EEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC--
T ss_pred             EEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCC
Confidence            1237888999999999999998762  22235677777653

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.85  E-value=2e-08  Score=75.28  Aligned_cols=76  Identities=22%  Similarity=0.329  Sum_probs=55.0

Q ss_pred             eEEeCCCcEEEEEEEeeeCCC--EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeE
Q psy18191        141 AVVPRHEPTTLNCKADGYPEP--RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARS  218 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s  218 (238)
                      ..+.+|+++.|.|.+.|.|.|  .+.|++++..+.....      ......+  .|.  ..+|+|.|+|.|.|..  .  
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~------~~~~~~l--~i~--~~~d~G~Y~C~~~n~~--~--   73 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL------PGQKTEF--KVD--SDDQWGEYSCVFLPEP--M--   73 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC------CCSEEEE--EEC--GGGCCEEEEEEEESTT--S--
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccc------cCCcEEE--EEe--chhhCeEEEEEEECCc--C--
Confidence            567889999999999998888  8999999988875311      1122222  133  5889999999999932  2  


Q ss_pred             EEEEEEEccCCC
Q psy18191        219 KNATLDVAGKIS  230 (238)
Q Consensus       219 ~~~~L~V~~~~~  230 (238)
                      ..+.|.|..+|.
T Consensus        74 ~~~~l~V~~~P~   85 (184)
T 3b5h_A           74 GTANIQLHGPPR   85 (184)
T ss_dssp             CEEEEEECCSCC
T ss_pred             cEEEEEEecCCc
Confidence            367788876554

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.84  E-value=8.6e-09  Score=81.23  Aligned_cols=94  Identities=14%  Similarity=0.269  Sum_probs=60.5

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeC-----CCEEEEEeCC--EE---eecc-------CCccEEE-ecCCcEEEEEeec
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYP-----EPRIEWYKDG--SL---VSAE-------IGSHRIL-LPAGSLFFLSLVH  195 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P-----~p~i~W~~~g--~~---l~~~-------~~~~~~~-~~~~~l~~~~vi~  195 (238)
                      +...|..+.+.+|+++.|.|.+.+.|     .+.+.|+++.  ..   +...       ...+... ...+...  +.|.
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--L~I~   81 (247)
T 1svz_A            4 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFT--LKIS   81 (247)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEE--EEES
T ss_pred             EEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEE--EEEC
Confidence            45556778899999999999999888     6899999842  21   1110       0111111 1122222  2378


Q ss_pred             CCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        196 GKKDTDSGVYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      .++.+|+|.|.|.|.|..+...+..+.|.|..++
T Consensus        82 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~  115 (247)
T 1svz_A           82 RVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGG  115 (247)
T ss_dssp             SCCGGGCEEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             CCCHHHCEEEEEEEccCCccEECCCEEEEEECCc
Confidence            8899999999999999876532235678876653

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.84  E-value=3e-09  Score=86.50  Aligned_cols=153  Identities=10%  Similarity=0.034  Sum_probs=28.9

Q ss_pred             cEEEeccccccccce------EEEEEcCCCCCCCCCceEEEeCCCccc-CCceEEeCCCCcceecceecCCccCCEEE-e
Q psy18191         65 ICLRFQDLLPQSKQG------LMYLVGSQASPDYPNRFSLCNNKTWQK-GLPLKKYHPPSLPLFPGVHGDGYRVPRIT-E  136 (238)
Q Consensus        65 ~~~w~~~~~~~~~~g------~~~l~~~~~~~~~~g~y~~~~~~~~~~-G~y~c~~~~~~~~~~~~~~~~v~~~P~i~-~  136 (238)
                      ++.|||++..+....      ...+.+.....++++.|+|.+.+.+.. |...-. ...     ....+++..+|... .
T Consensus       120 ~itW~kg~~~l~~~~~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~-~~s-----~~~~L~V~~~P~~~~~  193 (291)
T 1mq8_A          120 TVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFE-NTS-----APYQLQTFVLPATPPQ  193 (291)
T ss_dssp             EEEEESSSSEEEEEECCBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEE-ECC-----CCEECBC---------
T ss_pred             EEEEEECCEEeecccCCCCCceEEEEeeeeeccCCceEEEEEEecCCccCCcccc-ccc-----cceEEEEEecCCCCce
Confidence            589999987554322      123444445556666899877764431 322110 001     11233455664321 1


Q ss_pred             CCCceEEeCCCcEEEEEEEeeeCCC---EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCC--CeEEEEEEEe
Q psy18191        137 HPASAVVPRHEPTTLNCKADGYPEP---RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTD--SGVYWCVARN  211 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~P~p---~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d--~G~Y~C~a~N  211 (238)
                      ......+.+|+.+.|.|.+.|.|++   .++|+++|..+...     ....++.+.+... ..+..+|  .+.|.|.|.|
T Consensus       194 ~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~-----~~~~g~~~~~~~~-~~~~~~~~~~~~~~C~~~~  267 (291)
T 1mq8_A          194 LVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT-----VTYGNDSFSAKAS-VSVTAEDEGTQRLTCAVIL  267 (291)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCce-----eeecCCeEEEEEe-cceeEcCCCCEEEEEEEEe
Confidence            1112357899999999999998654   59999999888642     1223344443332 1223333  6678898887


Q ss_pred             CCCceeEEEEEEEEccCCC
Q psy18191        212 ELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       212 ~~G~~~s~~~~L~V~~~~~  230 (238)
                      ...... ....|.|..-+.
T Consensus       268 ~~~~~~-~~~~l~v~~~~~  285 (291)
T 1mq8_A          268 GNQSQE-TLQTVTIYSFPA  285 (291)
T ss_dssp             -------------------
T ss_pred             CCcceE-EEEEEEEEcCCC
Confidence            554454 366777766443

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.83  E-value=2.2e-08  Score=76.38  Aligned_cols=88  Identities=17%  Similarity=0.177  Sum_probs=58.6

Q ss_pred             CCCceEEeCCCcEEEEEEEeeeCCCE---EEEEeCCEEeecc------CCc---------cEEEe-------cCCcEEEE
Q psy18191        137 HPASAVVPRHEPTTLNCKADGYPEPR---IEWYKDGSLVSAE------IGS---------HRILL-------PAGSLFFL  191 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~P~p~---i~W~~~g~~l~~~------~~~---------~~~~~-------~~~~l~~~  191 (238)
                      .|..+++.+|+++.|.|.+.+.|.+.   |.|+|++..+...      ...         .+...       .+++|.  
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~--   82 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVL--   82 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEE--
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEE--
Confidence            35678899999999999999988764   8999976543211      000         00110       112343  


Q ss_pred             EeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccC
Q psy18191        192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       192 ~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~  228 (238)
                        |..++.+|+|.|.|.+.|..+........+.+..+
T Consensus        83 --I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~  117 (218)
T 4frw_A           83 --LRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVP  117 (218)
T ss_dssp             --ESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC
T ss_pred             --EeeccHHHCCceeEEEEeccCceeeeEEEEEEeee
Confidence              67779999999999999988766544455555443

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.83  E-value=1.7e-08  Score=79.36  Aligned_cols=93  Identities=16%  Similarity=0.308  Sum_probs=60.1

Q ss_pred             EEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEe----------------CCEEeeccCC-ccEEEe--cCCcEEEEEe
Q psy18191        133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK----------------DGSLVSAEIG-SHRILL--PAGSLFFLSL  193 (238)
Q Consensus       133 ~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~----------------~g~~l~~~~~-~~~~~~--~~~~l~~~~v  193 (238)
                      .+...|..+.+.+|+++.|.|.+.+.|.+.+.|+|                ++........ .+....  ..+...  +.
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--L~   80 (246)
T 4dzb_B            3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLST--LT   80 (246)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEE--EE
T ss_pred             ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEE--EE
Confidence            35556677889999999999999999999999998                2222221100 121111  122222  23


Q ss_pred             ecCCCCCCCeEEEEEEEeCCCc---eeEEEEEEEEcc
Q psy18191        194 VHGKKDTDSGVYWCVARNELGF---ARSKNATLDVAG  227 (238)
Q Consensus       194 i~~v~~~d~G~Y~C~a~N~~G~---~~s~~~~L~V~~  227 (238)
                      |..++.+|+|.|.|.|.|..+.   .....+.|.|..
T Consensus        81 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  117 (246)
T 4dzb_B           81 VTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLE  117 (246)
T ss_dssp             ECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEES
T ss_pred             ECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEec
Confidence            7888999999999999986541   111245677764

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=98.83  E-value=6.9e-09  Score=82.39  Aligned_cols=141  Identities=12%  Similarity=0.145  Sum_probs=74.2

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCc------------ccCCce---EEeCCCCcceecceecCCccCCEEEeCCCceEEeC
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTW------------QKGLPL---KKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPR  145 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~------------~~G~y~---c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~  145 (238)
                      ..|.|.++.++|+|.|.|...+..            ..|.+.   .... .....+. +......+|.+...+....+..
T Consensus        78 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~l~-V~~~~~~~P~v~~~~~~~~~~~  155 (248)
T 3u2s_H           78 LYLQMNSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVW-GKGTTVT-VSSASTKGPSVFPLAPSSKSTS  155 (248)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEE-CCCEEEE-ECSCCCBCCEEEEECCC-----
T ss_pred             EEEEECCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceee-CCCEEEE-EcccCCCCCEEEEeCCCccccC
Confidence            357788888888888887654310            011110   0001 1111111 1112345677765444445567


Q ss_pred             CCcEEEEEEEeee-C-CCEEEEEeCCEEeeccCCccEEEecCCcEEEEE--eecCCCCCCCeEEEEEEEeCCCceeEEEE
Q psy18191        146 HEPTTLNCKADGY-P-EPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLS--LVHGKKDTDSGVYWCVARNELGFARSKNA  221 (238)
Q Consensus       146 G~~~~L~C~~~g~-P-~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~--vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~  221 (238)
                      |+.+.|.|.+.|. | .+.+.|++++..+...... .....++...+..  .|......| |.|+|.+.|..+... ...
T Consensus       156 g~~~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~-~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~-~~~  232 (248)
T 3u2s_H          156 GGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFP-AVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK-VDK  232 (248)
T ss_dssp             -CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECC-CEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEE-EEE
T ss_pred             CCcEEEEEEEeeEECCCeEEEEeECCccCceeecC-ceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcc-eEE
Confidence            9999999999874 4 3579999988643221111 1122344433221  244446667 999999999987764 355


Q ss_pred             EEEEc
Q psy18191        222 TLDVA  226 (238)
Q Consensus       222 ~L~V~  226 (238)
                      .|.+.
T Consensus       233 ~l~~~  237 (248)
T 3u2s_H          233 KVEPK  237 (248)
T ss_dssp             ECCC-
T ss_pred             EEccC
Confidence            55443

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.82  E-value=8e-10  Score=86.29  Aligned_cols=98  Identities=16%  Similarity=0.294  Sum_probs=48.7

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC--EEe---ecc------CCccEEEecCCcEEEEEeecCCC
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG--SLV---SAE------IGSHRILLPAGSLFFLSLVHGKK  198 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g--~~l---~~~------~~~~~~~~~~~~l~~~~vi~~v~  198 (238)
                      ..+.+...|..+.+.+|+++.|.|.+.+.|.+.+.|++++  ..+   ...      ....++............|..++
T Consensus        22 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  101 (233)
T 3bqu_C           22 AETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENML  101 (233)
T ss_dssp             -CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----
T ss_pred             cceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCC
Confidence            3455666677888999999999999999988899999853  211   100      00011111100111122366779


Q ss_pred             CCCCeEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191        199 DTDSGVYWCVARNELGFARSKNATLDVAG  227 (238)
Q Consensus       199 ~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~  227 (238)
                      .+|+|.|.|.|.|..+...+....|.|..
T Consensus       102 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  130 (233)
T 3bqu_C          102 SEDVADYYCLQSDNLPYTFGGGTNLEIKR  130 (233)
T ss_dssp             CCCCSEEEEEECSSSSCCBCCCCBC---C
T ss_pred             HHHCEEEEEEEecCCceeecCCEEEEEeC
Confidence            99999999999998764322234566654

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=98.81  E-value=2.3e-08  Score=70.23  Aligned_cols=90  Identities=19%  Similarity=0.257  Sum_probs=55.5

Q ss_pred             CCCceEEeCCCcEEEEEEEeee----CCCEEEEEeCCE----E--ee-cc----------CCccEEEec------CCcEE
Q psy18191        137 HPASAVVPRHEPTTLNCKADGY----PEPRIEWYKDGS----L--VS-AE----------IGSHRILLP------AGSLF  189 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~----P~p~i~W~~~g~----~--l~-~~----------~~~~~~~~~------~~~l~  189 (238)
                      .|..+.+.+|+++.|.|...+.    +.+.+.|++++.    .  +. ..          ....+..+.      +.+|.
T Consensus         5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   84 (124)
T 1neu_A            5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIV   84 (124)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEE
T ss_pred             cCCeEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEEE
Confidence            3456788999999999998543    567899998532    1  11 00          001222221      23443


Q ss_pred             EEEeecCCCCCCCeEEEEEEEeCCCce-eEEEEEEEEccCCC
Q psy18191        190 FLSLVHGKKDTDSGVYWCVARNELGFA-RSKNATLDVAGKIS  230 (238)
Q Consensus       190 ~~~vi~~v~~~d~G~Y~C~a~N~~G~~-~s~~~~L~V~~~~~  230 (238)
                          |..++.+|+|.|.|.+.|..+.. ....+.|.|..+++
T Consensus        85 ----I~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~~p~  122 (124)
T 1neu_A           85 ----IHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVP  122 (124)
T ss_dssp             ----ECSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC---
T ss_pred             ----EccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEecCCC
Confidence                67779999999999999987752 23588999987654

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=98.81  E-value=2.1e-08  Score=69.12  Aligned_cols=77  Identities=23%  Similarity=0.318  Sum_probs=50.4

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeee--CCCEEEEEeCC--E---EeeccCCccEE-EecCCcEEEEEeecCCCCCCCeEE
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGY--PEPRIEWYKDG--S---LVSAEIGSHRI-LLPAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~--P~p~i~W~~~g--~---~l~~~~~~~~~-~~~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                      +...|..+.+.+|+++.|.|.+.+.  +.+.+.|+++.  .   .+... .++.. ....+.....+.|..++.+|+|.|
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y   81 (108)
T 2coq_A            3 VDQTPRIATKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISI-GGRYSETVDEGSNSASLTIRDLRVEDSGTY   81 (108)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECCSSEEEEEEEEEEEETTCCCEEECCC-BTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             eEeCCceEEEcCCCCEEEEeEeCCCcCCCCEEEEEEcCCCCCcEEEEEe-CCceEEEEcCCCCEEEEEECCCCcccCEEE
Confidence            3445677889999999999999765  35789999862  2   12211 12221 111111122233788899999999


Q ss_pred             EEEEEe
Q psy18191        206 WCVARN  211 (238)
Q Consensus       206 ~C~a~N  211 (238)
                      .|.+.|
T Consensus        82 ~C~~~~   87 (108)
T 2coq_A           82 KCKAYR   87 (108)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999998

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=98.81  E-value=3.2e-08  Score=68.47  Aligned_cols=79  Identities=13%  Similarity=0.203  Sum_probs=53.2

Q ss_pred             CEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC-----EEeecc-------CCccEEEe-cCCcEEEEEeecCCC
Q psy18191        132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG-----SLVSAE-------IGSHRILL-PAGSLFFLSLVHGKK  198 (238)
Q Consensus       132 P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g-----~~l~~~-------~~~~~~~~-~~~~l~~~~vi~~v~  198 (238)
                      +.+...|..+.+.+|++++|.|.+.+.+.+.+.|++..     ..+...       ...+.... ..+...  +.|..++
T Consensus         5 ~~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~--L~I~~v~   82 (111)
T 1i3g_L            5 IVLTQSHKFMSTSVGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFT--LTISNVQ   82 (111)
T ss_dssp             CCEEESCSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEE--EEESSCC
T ss_pred             ceEEEeCCEEEEcCCCCEEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcCCCEEE--EEECCCC
Confidence            34555667788999999999999988888899999853     122110       01111111 122222  2378889


Q ss_pred             CCCCeEEEEEEEeC
Q psy18191        199 DTDSGVYWCVARNE  212 (238)
Q Consensus       199 ~~d~G~Y~C~a~N~  212 (238)
                      .+|+|.|.|.+.|.
T Consensus        83 ~~DsG~Y~C~~~~~   96 (111)
T 1i3g_L           83 SEDLADYFCQQYSS   96 (111)
T ss_dssp             GGGCSEEEEEECSS
T ss_pred             HHHCEEEEEEEecC
Confidence            99999999999886

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=98.81  E-value=3.5e-09  Score=86.76  Aligned_cols=93  Identities=15%  Similarity=0.167  Sum_probs=66.6

Q ss_pred             CCceEEeCCCcEEEEEEEeee-----CCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        138 PASAVVPRHEPTTLNCKADGY-----PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~-----P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      |.+..+..|+++.|.|.+.+.     |.|.+.|+++|..+..   .......++.....+.|..+...|+|.|+|.|.|.
T Consensus         7 p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~---~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~   83 (313)
T 2d9q_B            7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPG---GRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGN   83 (313)
T ss_dssp             ESCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTT---CEECCCSSSCCCEEEEESCCCSSEEEEEEEEESSS
T ss_pred             CCCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCc---cceEEEecCeEEEEEEEeccCCCccceEEeeecCC
Confidence            356778999999999999987     6789999999987742   22222233321111126777999999999999776


Q ss_pred             CCceeEEEEEEEEccCCCCCCC
Q psy18191        213 LGFARSKNATLDVAGKISTATD  234 (238)
Q Consensus       213 ~G~~~s~~~~L~V~~~~~~~~~  234 (238)
                      .+... ..+.|.|..+|+.|.+
T Consensus        84 ~~~~~-~~~~l~v~~~P~~P~~  104 (313)
T 2d9q_B           84 SLQIL-DQVELRAGYPPAIPHN  104 (313)
T ss_dssp             SEEEE-EEEEEEECCCCCCCEE
T ss_pred             CceeE-EEEEEccCCCCCCCcc
Confidence            55553 4788888888877754

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=3.9e-08  Score=70.58  Aligned_cols=102  Identities=22%  Similarity=0.351  Sum_probs=63.6

Q ss_pred             CEEEeCCCceEEeCCCcEEEEEEEeee-CCCEEEEEeCCE----EeeccCCc--cEEEe-----cCCcEEEEEeecCCCC
Q psy18191        132 PRITEHPASAVVPRHEPTTLNCKADGY-PEPRIEWYKDGS----LVSAEIGS--HRILL-----PAGSLFFLSLVHGKKD  199 (238)
Q Consensus       132 P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~p~i~W~~~g~----~l~~~~~~--~~~~~-----~~~~l~~~~vi~~v~~  199 (238)
                      ..+...|..+.+.+|++++|.|.+.+. |.+.+.|++++.    .+......  .+...     ..+.....+.|..++.
T Consensus         9 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~   88 (136)
T 2d9c_A            9 LQVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITP   88 (136)
T ss_dssp             CCEECCCSEEEEETTSCEEECCEESCCCSCCCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCT
T ss_pred             eEEEecCcEEEEcCCCCEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCH
Confidence            345555667889999999999999775 567899999752    12111000  01110     0000011223778899


Q ss_pred             CCCeEEEEEEEeCCCc--ee---EEEEEEEEccCCCCCC
Q psy18191        200 TDSGVYWCVARNELGF--AR---SKNATLDVAGKISTAT  233 (238)
Q Consensus       200 ~d~G~Y~C~a~N~~G~--~~---s~~~~L~V~~~~~~~~  233 (238)
                      +|+|.|.|.+.|..+.  ..   ...+.|.|..+++.|.
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~g~~t~L~V~~~~s~P~  127 (136)
T 2d9c_A           89 ADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPSAPV  127 (136)
T ss_dssp             TTCEEEEEEEEECCSSSCEEEEECCCEEEEEECCCCCCC
T ss_pred             HHCEEEEEEEEeCCCCcccceeeCCCeEEEEEeCCCCCc
Confidence            9999999999986541  11   1257899988776554

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=98.80  E-value=3.5e-08  Score=80.29  Aligned_cols=92  Identities=15%  Similarity=0.068  Sum_probs=63.7

Q ss_pred             eCCCceEEeCCCcEEEEEEEeee-------CCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGY-------PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~-------P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      ..|.+..+..|+++.|.|.+.|.       |.|.+.|+++|..+...  ...+ ..+....  ..|..+...| |.|+|.
T Consensus         9 i~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~--~~~~-~~~~~~~--L~i~~~~~~~-g~Y~C~   82 (303)
T 1i1r_A            9 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE--QYTI-INRTASS--VTFTDIASLN-IQLTCN   82 (303)
T ss_dssp             EESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGG--GCEE-EETTEEE--EEECSCCCSE-EEEEEE
T ss_pred             EccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChh--heee-eCCcEEE--EEEcCcCCCc-eEEEEe
Confidence            34677889999999999999864       88999999999988642  2222 2222111  2256667764 999999


Q ss_pred             EEeCCCcee--EEEEEEEEccCCCCCCC
Q psy18191        209 ARNELGFAR--SKNATLDVAGKISTATD  234 (238)
Q Consensus       209 a~N~~G~~~--s~~~~L~V~~~~~~~~~  234 (238)
                      |.|. |...  ...+.|.+..+|+.|.+
T Consensus        83 a~~~-g~~~~~~~~~~l~v~~~P~~P~~  109 (303)
T 1i1r_A           83 ILTF-GQLEQNVYGITIISGLPPEKPKN  109 (303)
T ss_dssp             EEET-TTEEEEEEEEEEEEECCCCCCEE
T ss_pred             cccC-CCcceEEEEEEEeccCCCCCCee
Confidence            9884 4331  23566778888877754

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=98.80  E-value=5e-09  Score=73.95  Aligned_cols=92  Identities=15%  Similarity=0.153  Sum_probs=63.7

Q ss_pred             ceEEeCCCcEEEEEEE-eeeCCCEEEEEeCCE-Eeecc----------CCccEEEe--cCCcEEEEEeecCCCCCCCeEE
Q psy18191        140 SAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGS-LVSAE----------IGSHRILL--PAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~-~g~P~p~i~W~~~g~-~l~~~----------~~~~~~~~--~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                      .+.+.+|++++|.|.. ...+...+.|+++.. .+...          ....+..+  .+++|.    |.+++.+|+|.|
T Consensus        13 pv~~~~G~~VtL~c~~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~~~~~sL~----I~nv~~~DsG~Y   88 (121)
T 2edo_A           13 HMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALY----ISKVQKEDNSTY   88 (121)
T ss_dssp             CCEEETTSCEEECCSSCCCSSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEECTTTCCEE----ESSCCGGGCSEE
T ss_pred             EEEEEeCCCEEEeCCCCCCCceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEeCCCceEE----EeCCCHHHCeEE
Confidence            4678899999999986 444556899998653 22110          00112222  345665    666699999999


Q ss_pred             EEEEEeCCCceeEEEEEEEEccCCCCCCCC
Q psy18191        206 WCVARNELGFARSKNATLDVAGKISTATDC  235 (238)
Q Consensus       206 ~C~a~N~~G~~~s~~~~L~V~~~~~~~~~~  235 (238)
                      .|.+.|..+......+.|.|..+++.|...
T Consensus        89 ~c~v~~~~~~~~~~~~~L~V~~~~~~P~I~  118 (121)
T 2edo_A           89 IMRVLKKTGNEQEWKIKLQVLDPVPKPVIK  118 (121)
T ss_dssp             EEEEEETTTEEEECCEECEEECCSCCCCCC
T ss_pred             EEEEEcCCCcEEEEEEEEEEECCCCCCEEE
Confidence            999998876544468899999988877643

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.80  E-value=1.8e-08  Score=80.55  Aligned_cols=98  Identities=17%  Similarity=0.266  Sum_probs=64.2

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeC------CCEEEEEeC--CEE---eecc-------CCccEEEe-cCCcEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYP------EPRIEWYKD--GSL---VSAE-------IGSHRILL-PAGSLFF  190 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P------~p~i~W~~~--g~~---l~~~-------~~~~~~~~-~~~~l~~  190 (238)
                      ..+.+...|..+.+.+|+++.|.|.+.+.|      .+.+.|+++  +..   +...       ...+.... ..+..  
T Consensus         4 ~~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~--   81 (264)
T 2gjj_A            4 ADIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDF--   81 (264)
T ss_dssp             CCCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEE--
T ss_pred             cccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEE--
Confidence            345666677888999999999999998887      688999984  221   1110       01121111 12222  


Q ss_pred             EEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       191 ~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      .+.|..++.+|+|.|.|.+.|..+......+.|.|..++
T Consensus        82 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~  120 (264)
T 2gjj_A           82 TLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGG  120 (264)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-
T ss_pred             EEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCC
Confidence            223788899999999999999866432235678887653

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.80  E-value=2.7e-08  Score=76.34  Aligned_cols=92  Identities=22%  Similarity=0.304  Sum_probs=61.0

Q ss_pred             eCCCceEEeCCCcEEEEEEEeee-------CCCEEEEEeCCEE------eec---------cCCccEEEec-----CCcE
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGY-------PEPRIEWYKDGSL------VSA---------EIGSHRILLP-----AGSL  188 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~-------P~p~i~W~~~g~~------l~~---------~~~~~~~~~~-----~~~l  188 (238)
                      ..|..+.+.+|+++.|.|.+.+.       +.+.+.|++++..      +..         ....+.....     +.+|
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL   84 (214)
T 2zg1_A            5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSL   84 (214)
T ss_dssp             ECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCE
T ss_pred             eCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEE
Confidence            34667889999999999998754       5788999998652      110         0012222221     1234


Q ss_pred             EEEEeecCCCCCCCeEEEEEEEeCCCceeE---EEEEEEEccCCCC
Q psy18191        189 FFLSLVHGKKDTDSGVYWCVARNELGFARS---KNATLDVAGKIST  231 (238)
Q Consensus       189 ~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s---~~~~L~V~~~~~~  231 (238)
                      .    |..++.+|+|.|.|.+.|..+...+   ..+.|.|...+..
T Consensus        85 ~----I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~  126 (214)
T 2zg1_A           85 S----IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEK  126 (214)
T ss_dssp             E----ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCC
T ss_pred             E----EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCC
Confidence            4    6777999999999999998743321   3677888775443

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.80  E-value=3.2e-09  Score=82.44  Aligned_cols=87  Identities=9%  Similarity=0.067  Sum_probs=57.7

Q ss_pred             cCCEEEeCCCceE--EeCCCcEEEEEEEeee---CC-CEEEEEeCCEEeeccCCccEEEecCCcE--EEEEeecCCCCCC
Q psy18191        130 RVPRITEHPASAV--VPRHEPTTLNCKADGY---PE-PRIEWYKDGSLVSAEIGSHRILLPAGSL--FFLSLVHGKKDTD  201 (238)
Q Consensus       130 ~~P~i~~~~~~~~--~~~G~~~~L~C~~~g~---P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l--~~~~vi~~v~~~d  201 (238)
                      .+|.+...+....  +.+|+++.|.|.+.|.   |. +.|.|++++..+............++..  ...+.|..+..+|
T Consensus         8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   87 (218)
T 2rgs_A            8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMS   87 (218)
T ss_dssp             -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHT
T ss_pred             CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCC
Confidence            5677765555544  7899999999999987   44 7899999998765321000111122221  1122356668899


Q ss_pred             CeEEEEEEEeCCCce
Q psy18191        202 SGVYWCVARNELGFA  216 (238)
Q Consensus       202 ~G~Y~C~a~N~~G~~  216 (238)
                      .|.|+|.|.|..+..
T Consensus        88 ~g~Y~C~~~~~~~~~  102 (218)
T 2rgs_A           88 GKEFKCKVNNKDLPS  102 (218)
T ss_dssp             TCCEEEEEEETTCSS
T ss_pred             CCeEEEEEECCcCCC
Confidence            999999999998754

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=98.79  E-value=4.2e-08  Score=68.10  Aligned_cols=91  Identities=19%  Similarity=0.213  Sum_probs=56.8

Q ss_pred             CCceEEeCCCcEEEEEEEee-eCCCEEEEEeCCEE--------eeccC------CccEEEe----cCCcEEEEEeecCCC
Q psy18191        138 PASAVVPRHEPTTLNCKADG-YPEPRIEWYKDGSL--------VSAEI------GSHRILL----PAGSLFFLSLVHGKK  198 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g-~P~p~i~W~~~g~~--------l~~~~------~~~~~~~----~~~~l~~~~vi~~v~  198 (238)
                      +..+.+.+|+++.|.|...+ .+.+.+.|++....        +....      ...++..    ..+...  +.|..++
T Consensus         4 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s--L~I~~v~   81 (116)
T 2or8_A            4 YVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVS--LTIENSV   81 (116)
T ss_dssp             CEEEEEETTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCC--EEESSCC
T ss_pred             cceEEEEeCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEE--EEECCCC
Confidence            34678899999999999865 34567999997521        11100      0111111    111111  2277789


Q ss_pred             CCCCeEEEEEEEeCCCce-eEEEEEEEEccCCC
Q psy18191        199 DTDSGVYWCVARNELGFA-RSKNATLDVAGKIS  230 (238)
Q Consensus       199 ~~d~G~Y~C~a~N~~G~~-~s~~~~L~V~~~~~  230 (238)
                      .+|+|.|.|.+.|..+.. ....+.|.|.+...
T Consensus        82 ~~DsG~Y~C~v~~~~~~~~~~~~~~l~V~p~~~  114 (116)
T 2or8_A           82 ESDSGLYCCRVEIPGWFNDQKVTFSLQVKPELV  114 (116)
T ss_dssp             GGGCEEEEEEECCSSTTCCEEEEEEEEEECSCC
T ss_pred             cccCEEEEEEEEcCCcccccEEEEEEEECCccC
Confidence            999999999999976443 13477888865443

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.79  E-value=2.1e-08  Score=78.34  Aligned_cols=93  Identities=17%  Similarity=0.333  Sum_probs=56.2

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEEee-------------ccCCcc-EEEe-cCCcEEEEEeecC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSLVS-------------AEIGSH-RILL-PAGSLFFLSLVHG  196 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~l~-------------~~~~~~-~~~~-~~~~l~~~~vi~~  196 (238)
                      +...|..+.+.+|+++.|.|. .+.|.|.+.|+++  +..+.             .....+ .... ..+...  +.|..
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--L~I~~   79 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFS--LILEL   79 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCE--EEESS
T ss_pred             ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEE--EEEec
Confidence            445567788999999999999 7889999999985  21110             000111 1111 111111  23778


Q ss_pred             CCCCCCeEEEEEEEeCCCce----eEEEEEEEEccCC
Q psy18191        197 KKDTDSGVYWCVARNELGFA----RSKNATLDVAGKI  229 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N~~G~~----~s~~~~L~V~~~~  229 (238)
                      ++.+|+|.|.|.|.|..|..    ......|.|...+
T Consensus        80 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~  116 (238)
T 2p1y_A           80 ATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSA  116 (238)
T ss_dssp             CCGGGCEEEEEEEEC------CEEECCCEEEEEECCC
T ss_pred             CCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccC
Confidence            89999999999999987631    1124467775543

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.79  E-value=1.3e-08  Score=78.07  Aligned_cols=88  Identities=18%  Similarity=0.301  Sum_probs=56.3

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEEee---cc-------CCccEE-EecCCcEEEEEeecCCCCCCCeE
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSLVS---AE-------IGSHRI-LLPAGSLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~l~---~~-------~~~~~~-~~~~~~l~~~~vi~~v~~~d~G~  204 (238)
                      |..+.+.+|+++.|.|.+.+.|.|.+.|+++  |..+.   ..       ...+.. ....+...+  .|..++.+|+|.
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L--~I~~v~~~D~G~   83 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATL--TISGAQPEDEAA   83 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEE--EETTCCGGGCSE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEE--EECcCCcccCEE
Confidence            6678899999999999998988889999984  33221   00       011211 112222222  378889999999


Q ss_pred             EEEEEEeCCC-ce-eEEEEEEEEcc
Q psy18191        205 YWCVARNELG-FA-RSKNATLDVAG  227 (238)
Q Consensus       205 Y~C~a~N~~G-~~-~s~~~~L~V~~  227 (238)
                      |.|.|.|..+ .. ....+.|.|..
T Consensus        84 Y~C~~~n~~~~~~~~~~~~~l~V~~  108 (212)
T 1nfd_E           84 YYCLSSYGDNNDLVFGSGTQLTVLR  108 (212)
T ss_dssp             EEEEEEETTTTEEEECCCEEEEEEC
T ss_pred             EEEEEEcccCcccccCCceEEEEcc
Confidence            9999998332 21 11245666643

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=98.79  E-value=5.7e-08  Score=70.81  Aligned_cols=97  Identities=15%  Similarity=0.261  Sum_probs=60.3

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC-----EEeeccC-------CccEEEe-cCCcEEEEEeecCC
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG-----SLVSAEI-------GSHRILL-PAGSLFFLSLVHGK  197 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g-----~~l~~~~-------~~~~~~~-~~~~l~~~~vi~~v  197 (238)
                      .+.+...|..+.+.+|++++|.|.+.+.+.+.+.|++..     ..|....       ..+.... ..+..  .+.|..+
T Consensus        16 ~~~v~q~p~~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~--sL~I~~v   93 (146)
T 2yc1_B           16 EIVLTQSPATLSVSPGERATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGSGTDF--TLTISSL   93 (146)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEE--EEEESSC
T ss_pred             cceEEEeCCEEEEecCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEecCCCEE--EEEECCC
Confidence            345566677788999999999999988777889999853     1222110       1111111 12222  2337888


Q ss_pred             CCCCCeEEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        198 KDTDSGVYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      +.+|+|.|.|.+.|........-..|.|..+.
T Consensus        94 ~~~DsG~Y~C~~~~~~~~~fg~GT~L~V~~~~  125 (146)
T 2yc1_B           94 EPEDFAIYYCQQYRYSPRTFGQGTKVEIKRAA  125 (146)
T ss_dssp             CGGGCSEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             CHHHCEEEEEEEecCCCCeECCCEEEEEeCCc
Confidence            99999999999988643221124467776543

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.78  E-value=3.4e-08  Score=74.47  Aligned_cols=88  Identities=16%  Similarity=0.132  Sum_probs=60.9

Q ss_pred             CceEEeCCCcEEEEEEEee-eCCCEEEEEeC-CEEeec-c---------CC--ccEEE-ecCCcEEEEEeecCCCCCCCe
Q psy18191        139 ASAVVPRHEPTTLNCKADG-YPEPRIEWYKD-GSLVSA-E---------IG--SHRIL-LPAGSLFFLSLVHGKKDTDSG  203 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g-~P~p~i~W~~~-g~~l~~-~---------~~--~~~~~-~~~~~l~~~~vi~~v~~~d~G  203 (238)
                      ..+.+.+|+++.|.|.+.+ .+.+.|.|+++ +..+.. .         ..  ++... ..+++|.    |+.++.+|+|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~----I~~v~~~D~G   82 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALR----IYNVSKEDRG   82 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEE----ECSCCGGGCE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEE----EcCCCHHHCe
Confidence            4577899999999999744 45789999994 333221 0         00  22222 3456666    5666999999


Q ss_pred             EEEEEEEeCCCceeEEEEEEEEccCCCCC
Q psy18191        204 VYWCVARNELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       204 ~Y~C~a~N~~G~~~s~~~~L~V~~~~~~~  232 (238)
                      .|.|.+.+.. ... ..+.|.|..+++.|
T Consensus        83 ~Y~C~v~~~~-~~~-~~~~L~V~~~~~~P  109 (180)
T 2dru_A           83 DYYMRMLHET-EDQ-WKITMEVYEMVSKP  109 (180)
T ss_dssp             EEEEEEESSS-EEE-EEEEEEEECCCCCC
T ss_pred             EEEEEEEcCC-eEE-EEEEEEEECCCCCC
Confidence            9999998876 443 58899998776554

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.78  E-value=6.8e-09  Score=91.92  Aligned_cols=89  Identities=28%  Similarity=0.386  Sum_probs=67.1

Q ss_pred             ceEEeCCCcEEEEEEE-eeeCCCEEEEEeCCEEeecc----------CCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        140 SAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAE----------IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~----------~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      ...+.+|+++.|.|.+ .+.|.|.+.|++++..+...          ...+.....+++|.    |..++.+|+|.|+|.
T Consensus       375 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~----i~~v~~~D~G~Y~C~  450 (581)
T 3o3u_N          375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLF----LPAVGIQDEGIFRCQ  450 (581)
T ss_dssp             EEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEE----ESSCCGGGCEEEEEE
T ss_pred             ccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEE----EeccccccCeEEEEE
Confidence            4678999999999998 88999999999986522110          01122334456665    566699999999999


Q ss_pred             EEeCCCceeEEEEEEEEccCCCCC
Q psy18191        209 ARNELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~~~~~~  232 (238)
                      +.|..|......+.|.|..++..|
T Consensus       451 ~~n~~~~~~~~~~~l~V~~~~~~p  474 (581)
T 3o3u_N          451 AMNRNGKETKSNYRVRVYQIPGKP  474 (581)
T ss_dssp             EECTTSCEEEEEEEEEEEBCCCCC
T ss_pred             EEcCCCceeEEEEEEEEEcCCCCC
Confidence            999999984468999998766654

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=98.77  E-value=1.5e-08  Score=79.25  Aligned_cols=140  Identities=13%  Similarity=0.199  Sum_probs=76.7

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCcc--cCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQ--KGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY  158 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~--~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~  158 (238)
                      ..|.|.++..+|+|.|.|...+...  ...+.-.+.  ....+. +......+|.+...+....+..|+.+.|.|.+.+.
T Consensus        79 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~--~~~~l~-V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~  155 (230)
T 3n9g_H           79 VYMELSSLRSEDTAVYYCARDWGSNYVWGSYPKYWG--QGTLVT-VSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDY  155 (230)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECCCSSSTTCCEEEEC--CCEEEE-ECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEE
T ss_pred             EEEEECCCChhhCEEEEEEEccCCCCcccccccccC--CCEEEE-EEecCCCCCEEEecCCCccccCCCCEEEEEEEEeE
Confidence            3477778888888888866543210  000000111  111111 11123456777643334445689999999999885


Q ss_pred             -C-CCEEEEEeCCEEeeccCC-ccEEEecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191        159 -P-EPRIEWYKDGSLVSAEIG-SHRILLPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG  227 (238)
Q Consensus       159 -P-~p~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~  227 (238)
                       | .+.+.|  ++..+..... .......++....  ...|......| |.|+|.+.|..+... ....|.|..
T Consensus       156 ~P~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~-~~~~~~v~~  225 (230)
T 3n9g_H          156 FPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK-VDKRVEPKS  225 (230)
T ss_dssp             BSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEE-EEEECCCCT
T ss_pred             ECCCEEEEE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcc-eEEEccCCC
Confidence             4 346899  6554432100 0011223343322  22356667788 999999999988764 366666654

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=98.77  E-value=1.9e-07  Score=74.14  Aligned_cols=136  Identities=13%  Similarity=0.162  Sum_probs=83.8

Q ss_pred             ccEEEeccccccccceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEE-eCCCceE
Q psy18191         64 PICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRIT-EHPASAV  142 (238)
Q Consensus        64 ~~~~w~~~~~~~~~~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~-~~~~~~~  142 (238)
                      .++.|||++.++..... .+.+......++|.|+|...+.  .|--.+.   . ...+.     ....+.+. ..|.+..
T Consensus        36 yTYqWyKDG~~IsGaT~-tLti~s~t~sdSG~YqCvVTDa--~Gcs~tS---s-~VtVT-----~~a~l~i~it~P~s~~  103 (304)
T 3shs_A           36 LTYTWTKDDQPHENNTA-TLTVADATSENAGSYKVTVQDT--DTMTSVE---S-EVFLM-----EEAELIVNITEPQHFY  103 (304)
T ss_dssp             EEEEEEETTEECSCCSS-EEEESSCCGGGCEEEEEEEEET--TTCCEEE---C-CCEEE-----CBCCEEEEESSCSEEE
T ss_pred             ceEEEEECCccccCCcc-eEEeeeccccCCeEEEEEEEEC--CCCeeee---e-eEEEe-----ccCceeEEecCCCcee
Confidence            47999999987664322 4566777788899999765442  2211111   1 01111     11222332 2366677


Q ss_pred             EeCCCcEEEEEEE--e-eeC-----CCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        143 VPRHEPTTLNCKA--D-GYP-----EPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       143 ~~~G~~~~L~C~~--~-g~P-----~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      +..|..+.|.+.+  . |.|     ..+++|++++..+..          ...+.    +...+..++|.|.|.+.|..|
T Consensus       104 vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg----------Aq~lT----~sS~TateaG~YtV~VTn~~~  169 (304)
T 3shs_A          104 VSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT----------TQDIT----IQEFTADKNGVYTVKVWGESE  169 (304)
T ss_dssp             ECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES----------SSEEE----ECSCCGGGCEEEEEEEESSSG
T ss_pred             ccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC----------ccccc----eeeEEecCCeEEEEEEEcCCC
Confidence            7788899999887  3 444     469999999987752          11223    223378899999999999987


Q ss_pred             -ceeEEEEEEEE
Q psy18191        215 -FARSKNATLDV  225 (238)
Q Consensus       215 -~~~s~~~~L~V  225 (238)
                       ...+..+.+.+
T Consensus       170 ~c~~s~~~~i~~  181 (304)
T 3shs_A          170 DSAASASTKIML  181 (304)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcccccceEEEE
Confidence             44444444443

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.77  E-value=2.7e-08  Score=76.65  Aligned_cols=89  Identities=15%  Similarity=0.190  Sum_probs=55.5

Q ss_pred             CCceEEeCCCcEEEEEEE-eeeC-CCEEEEEeCC--EEe---ec-------cCCccEEEe-cCCcEEEEEeecCCCCCCC
Q psy18191        138 PASAVVPRHEPTTLNCKA-DGYP-EPRIEWYKDG--SLV---SA-------EIGSHRILL-PAGSLFFLSLVHGKKDTDS  202 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~-~g~P-~p~i~W~~~g--~~l---~~-------~~~~~~~~~-~~~~l~~~~vi~~v~~~d~  202 (238)
                      |..+.+.+|+++.|.|.+ .+.+ .+.+.|++++  ..+   ..       ....+.... ..+...  +.|..++.+|+
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--L~I~~v~~~D~   84 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSAT--LGITGLQTGDE   84 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEE--EEECSCCGGGC
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEE--EEECCCCcccC
Confidence            556788999999999995 4443 5899999853  221   10       001121111 122222  23788899999


Q ss_pred             eEEEEEEEeCCC-ceeEEEEEEEEccC
Q psy18191        203 GVYWCVARNELG-FARSKNATLDVAGK  228 (238)
Q Consensus       203 G~Y~C~a~N~~G-~~~s~~~~L~V~~~  228 (238)
                      |.|.|.|.|..| ......+.|.|...
T Consensus        85 G~Y~C~~~~~~~~~~~~~~~~l~V~~~  111 (216)
T 2xzc_L           85 ADYYCGTWDSSLNPVFGGGTKLEIKRT  111 (216)
T ss_dssp             EEEEEEEECTTSCEEEBCCEEEEECCC
T ss_pred             EEEEEEEEeCCCcceECCCEEEEEcCC
Confidence            999999999887 22223556777543

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=98.76  E-value=5.3e-08  Score=69.16  Aligned_cols=81  Identities=25%  Similarity=0.347  Sum_probs=53.7

Q ss_pred             EEEeCCCceEEeCCCcEEEEEEEeee--CCCEEEEEeC--CEE---eeccCCccEE-EecCCcEEEEEeecCCCCCCCeE
Q psy18191        133 RITEHPASAVVPRHEPTTLNCKADGY--PEPRIEWYKD--GSL---VSAEIGSHRI-LLPAGSLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       133 ~i~~~~~~~~~~~G~~~~L~C~~~g~--P~p~i~W~~~--g~~---l~~~~~~~~~-~~~~~~l~~~~vi~~v~~~d~G~  204 (238)
                      .+...|..+.+.+|++++|.|...+.  +.+.+.|++.  +..   +... .++.. ....+.....+.|..++.+|+|.
T Consensus         2 ~V~Q~p~~v~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~-~~R~~~~~~~~~~~~sL~I~~v~~~DsG~   80 (126)
T 3moq_A            2 WVDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISI-GGRYVETVNKGSKSFSLRISDLRVEDSGT   80 (126)
T ss_dssp             EEEEECSEEEEETTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCC-BTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             ceEECCceEEEeCCCCEEEEEEeecCccCCceEEEEEeCCCCCceEEEEe-CCcEEEEEeCCCCEEEEEECcCChHhCEE
Confidence            45566778899999999999999765  5678999983  321   1111 12221 11111112223478889999999


Q ss_pred             EEEEEEeCCC
Q psy18191        205 YWCVARNELG  214 (238)
Q Consensus       205 Y~C~a~N~~G  214 (238)
                      |.|.+.|..+
T Consensus        81 Y~C~~~~~~~   90 (126)
T 3moq_A           81 YKCQAFYVFF   90 (126)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEcCC
Confidence            9999998765

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=98.76  E-value=8.6e-09  Score=84.98  Aligned_cols=88  Identities=16%  Similarity=0.154  Sum_probs=64.6

Q ss_pred             eCCCceEEeCCCcEEEEEEEeeeC-CCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGYP-EPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~P-~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      ..+..+.+..|+++.|.|.+.+.| .+.|.|++++..+..  ...+....++.|.    |..+...|+|.|+|.   ..|
T Consensus        11 ~p~~~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~--~~~~~~~~~~~L~----i~~v~~~d~G~Y~C~---~~g   81 (325)
T 1n26_A           11 VARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGS--HPSRWAGMGRRLL----LRSVQLHDSGNYSCY---RAG   81 (325)
T ss_dssp             CCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSC--CCEEEEEESSEEE----ECSCCGGGCEEEEEE---SSS
T ss_pred             cCCCcEECCCCCcEEEEeCCCCCCCCceEEEEECCccCCc--cccccccccceEE----ecccchhhCeEeEEE---eCC
Confidence            333445557999999999988765 789999998766522  1223334456665    566699999999999   378


Q ss_pred             ceeEEEEEEEEccCCCCCC
Q psy18191        215 FARSKNATLDVAGKISTAT  233 (238)
Q Consensus       215 ~~~s~~~~L~V~~~~~~~~  233 (238)
                      ... ..+.|.|..+|+.|.
T Consensus        82 ~~~-~~~~L~V~~pP~~P~   99 (325)
T 1n26_A           82 RPA-GTVHLLVDVPPEEPQ   99 (325)
T ss_dssp             SCS-CEEEEEECCCCCCCC
T ss_pred             EEe-eeEEEEeccCCCCCc
Confidence            876 589999998887765

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.76  E-value=6.4e-08  Score=74.66  Aligned_cols=88  Identities=19%  Similarity=0.382  Sum_probs=57.2

Q ss_pred             CCceEEeCCCcEEEEEEEeeeC--CCEEEEEeC--CEEeec----c-----------CCccEEEec---CCcEEEEEeec
Q psy18191        138 PASAVVPRHEPTTLNCKADGYP--EPRIEWYKD--GSLVSA----E-----------IGSHRILLP---AGSLFFLSLVH  195 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~--g~~l~~----~-----------~~~~~~~~~---~~~l~~~~vi~  195 (238)
                      |..+.+.+|+++.|.|.+.|.|  .+.+.|+++  +..+..    .           ...+.....   .+..  .+.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~--~L~I~   84 (219)
T 1c1e_H            7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTA--YLQIN   84 (219)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEE--EEEEC
T ss_pred             CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEE--EEEEC
Confidence            5567889999999999999875  689999986  332210    0           011111111   1111  22378


Q ss_pred             CCCCCCCeEEEEEEEeCCCce---eEEEEEEEEcc
Q psy18191        196 GKKDTDSGVYWCVARNELGFA---RSKNATLDVAG  227 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~N~~G~~---~s~~~~L~V~~  227 (238)
                      .++.+|+|.|.|.|.|..|..   ....+.|.|..
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  119 (219)
T 1c1e_H           85 NLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSS  119 (219)
T ss_dssp             SCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECC
T ss_pred             CCCcccCEEEEEEEeccCcccceeecCceEEEEec
Confidence            889999999999999987421   11256777765

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=98.76  E-value=1.7e-08  Score=69.21  Aligned_cols=82  Identities=18%  Similarity=0.136  Sum_probs=53.1

Q ss_pred             ceEEeCCCcEEEEEEEeeeCCC---EEEEEeCCEE-------e-eccC-------CccEEEec-----CCcEEEEEeecC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPEP---RIEWYKDGSL-------V-SAEI-------GSHRILLP-----AGSLFFLSLVHG  196 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~p---~i~W~~~g~~-------l-~~~~-------~~~~~~~~-----~~~l~~~~vi~~  196 (238)
                      .+.+.+|+++.|.|.+.+.+.+   .+.|++....       + ....       ..+.....     ...|.    |..
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~----I~~   78 (109)
T 2oyp_A            3 GYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLI----IKN   78 (109)
T ss_dssp             EEEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEE----ECS
T ss_pred             CEEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEE----Ecc
Confidence            4678899999999998776543   4999986421       1 1110       11111111     12343    677


Q ss_pred             CCCCCCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191        197 KKDTDSGVYWCVARNELGFARSKNATLDVA  226 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~  226 (238)
                      ++.+|+|.|.|.+.|..+... ..+.|.|.
T Consensus        79 v~~~D~G~Y~C~v~~~~~~~~-~~~~l~V~  107 (109)
T 2oyp_A           79 VTLDDHGTYCCRIQFPGLMND-KKLELKLD  107 (109)
T ss_dssp             CCGGGCEEEEEEECCSSTTCC-EEEEEEEE
T ss_pred             CCChhCeEEEEEEEcCCcccc-eEEEEEEE
Confidence            799999999999999876664 36666664

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.76  E-value=5.5e-08  Score=77.16  Aligned_cols=94  Identities=20%  Similarity=0.259  Sum_probs=61.4

Q ss_pred             CEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC--E---Eeecc---------CCccEEE--ecCCcEEEEEeec
Q psy18191        132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG--S---LVSAE---------IGSHRIL--LPAGSLFFLSLVH  195 (238)
Q Consensus       132 P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g--~---~l~~~---------~~~~~~~--~~~~~l~~~~vi~  195 (238)
                      ..+...|..+.+.+|+++.|.|.+.+.|.|.+.|++..  .   .+...         .......  ...+..  .+.|.
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--sL~I~   81 (256)
T 3tf7_C            4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSF--HLRKA   81 (256)
T ss_dssp             CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEE--EEEES
T ss_pred             cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEE--EEEEC
Confidence            34666677889999999999999999999999999832  1   11100         0011111  111221  22378


Q ss_pred             CCCCCCCeEEEEEEEeCCCce---eEEEEEEEEcc
Q psy18191        196 GKKDTDSGVYWCVARNELGFA---RSKNATLDVAG  227 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~N~~G~~---~s~~~~L~V~~  227 (238)
                      .++.+|+|.|.|.|.|..|..   ....+.|.|..
T Consensus        82 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~  116 (256)
T 3tf7_C           82 SVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSP  116 (256)
T ss_dssp             SCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC
T ss_pred             CCCcccCEEEEEEEecCCCccceEECCCeEEEEeC
Confidence            889999999999999987532   11245677765

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.75  E-value=4.3e-08  Score=77.11  Aligned_cols=88  Identities=15%  Similarity=0.368  Sum_probs=56.7

Q ss_pred             CceEEeCCCcEEEEEEEeeeC--CCEEEEEeCC--EEee---------------ccCCccEEEec---CCcEEEEEeecC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYP--EPRIEWYKDG--SLVS---------------AEIGSHRILLP---AGSLFFLSLVHG  196 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~g--~~l~---------------~~~~~~~~~~~---~~~l~~~~vi~~  196 (238)
                      ..+.+.+|+++.|.|.+.|.|  .+.+.|+++.  ..+.               .....+.....   .+...  +.|..
T Consensus        10 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--L~I~~   87 (247)
T 2ghw_B           10 GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLY--LQMNS   87 (247)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEE--EEECS
T ss_pred             CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEE--EEECc
Confidence            458899999999999999987  6889999842  1110               00011222111   12222  23788


Q ss_pred             CCCCCCeEEEEEEEeCCCce-eEEEEEEEEccC
Q psy18191        197 KKDTDSGVYWCVARNELGFA-RSKNATLDVAGK  228 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N~~G~~-~s~~~~L~V~~~  228 (238)
                      ++.+|+|.|.|.|.|..+.. ....+.|.|...
T Consensus        88 v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~  120 (247)
T 2ghw_B           88 LRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSG  120 (247)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEECCCEEEEECSC
T ss_pred             CCHHHCEEEEEeeeccCCccccCCceEEEEecc
Confidence            89999999999999984332 112457888765

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=98.74  E-value=1.6e-07  Score=64.94  Aligned_cols=89  Identities=11%  Similarity=0.134  Sum_probs=57.9

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCC-CEEEEEeCCE-----EeeccC-------CccEEEe---cCCcEEEEEeecCCCCCC
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPE-PRIEWYKDGS-----LVSAEI-------GSHRILL---PAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~-p~i~W~~~g~-----~l~~~~-------~~~~~~~---~~~~l~~~~vi~~v~~~d  201 (238)
                      |..+.+.+|+++.|.|...+.+. ..+.|++...     .+....       .++....   ..+...  +.|..++.+|
T Consensus         8 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~s--L~I~~~~~~D   85 (113)
T 1zox_A            8 PEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFT--VTMEDLRMSD   85 (113)
T ss_dssp             CSEEEEETTSCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEE--EEECSCCGGG
T ss_pred             CCEEEEeCCCcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEE--EEEccCCHHH
Confidence            45678899999999999876543 4699998642     121110       0111111   122222  2378889999


Q ss_pred             CeEEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        202 SGVYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       202 ~G~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      +|.|.|.+.+...... ..+.|.|...|
T Consensus        86 sG~Y~C~v~~~~~~~~-~~v~L~V~~~p  112 (113)
T 1zox_A           86 AGIYWCGITKGGLDPM-FKVTVNIGPVP  112 (113)
T ss_dssp             CEEEEEEECCSSSCCE-EEEEEEEECC-
T ss_pred             CEEEEEeeEcCCCCcc-EEEEEEEEcCC
Confidence            9999999998754443 68899997654

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=98.74  E-value=7.6e-08  Score=66.86  Aligned_cols=78  Identities=21%  Similarity=0.310  Sum_probs=51.0

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCC------CEEEEEeCC--E---Eeecc-------CCccEEEe-cCCcEEEEEee
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPE------PRIEWYKDG--S---LVSAE-------IGSHRILL-PAGSLFFLSLV  194 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~------p~i~W~~~g--~---~l~~~-------~~~~~~~~-~~~~l~~~~vi  194 (238)
                      +...|..+.+.+|+++.|.|.+.+.+.      +.+.|++..  .   .+...       ...+.... ..+...  +.|
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~--L~I   81 (114)
T 1eeq_A            4 LTQSPDSLAVSLGERATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFT--LTI   81 (114)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEE--EEE
T ss_pred             eEecCCeEEEcCCCeEEEEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEeecCCEEE--EEE
Confidence            344566788999999999999987763      679999853  1   12110       01111111 122222  237


Q ss_pred             cCCCCCCCeEEEEEEEeCC
Q psy18191        195 HGKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       195 ~~v~~~d~G~Y~C~a~N~~  213 (238)
                      ..++.+|+|.|.|.+.|..
T Consensus        82 ~~v~~~DsG~Y~C~~~~~~  100 (114)
T 1eeq_A           82 SSLQAEDVAVYYCQQYYSH  100 (114)
T ss_dssp             SSCCGGGCEEEEEEECSSS
T ss_pred             CCCCcccCEEEEEEEeeCC
Confidence            8889999999999999853

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=98.74  E-value=1.8e-07  Score=70.76  Aligned_cols=81  Identities=19%  Similarity=0.288  Sum_probs=52.9

Q ss_pred             CccCC-EEEeCCCceEEeCCCcEEEEEEEeee-CCC--EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCe
Q psy18191        128 GYRVP-RITEHPASAVVPRHEPTTLNCKADGY-PEP--RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSG  203 (238)
Q Consensus       128 v~~~P-~i~~~~~~~~~~~G~~~~L~C~~~g~-P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G  203 (238)
                      +..+| .+...+....+.+|+.++|.|.+.|. |.+  .|+|++++..+....    .........+.  +. +..+|.|
T Consensus        82 V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~----~~~~~~~~tl~--~~-~~reD~g  154 (185)
T 1iam_A           82 VYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP----AVGEPAEVTTT--VL-VRRDHHG  154 (185)
T ss_dssp             EEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE----CCTTTEEEEEE--EE-CCSSCSS
T ss_pred             EeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEccccc----CCCccccEEEE--Ee-ceeccCC
Confidence            44444 34455555678999999999999885 543  489999999886421    01112222222  22 3666766


Q ss_pred             -EEEEEEEeCCCc
Q psy18191        204 -VYWCVARNELGF  215 (238)
Q Consensus       204 -~Y~C~a~N~~G~  215 (238)
                       .|+|.|.|.++.
T Consensus       155 ~~~sC~A~~~l~~  167 (185)
T 1iam_A          155 AQFSCRTELDLRP  167 (185)
T ss_dssp             CEEEEEEEEECGG
T ss_pred             CeEEEEEEecCcc
Confidence             999999999873

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.74  E-value=2.5e-08  Score=79.28  Aligned_cols=92  Identities=23%  Similarity=0.307  Sum_probs=57.7

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEe---eeCCCEEEEEeCCEEeecc-------CC--------ccEEEec------CC
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKAD---GYPEPRIEWYKDGSLVSAE-------IG--------SHRILLP------AG  186 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~---g~P~p~i~W~~~g~~l~~~-------~~--------~~~~~~~------~~  186 (238)
                      .+.+...+..+.+.+|+++.|.|.+.   +.|.+.+.|++++......       ..        ..+..+.      ++
T Consensus         5 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   84 (268)
T 3mj6_A            5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDG   84 (268)
T ss_dssp             -------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBC
T ss_pred             ccccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEE
Confidence            44566667778899999999999987   7788899999965321100       00        0111111      14


Q ss_pred             cEEEEEeecCCCCCCCeEEEEEEEeCCCce-eEEEEEEEEc
Q psy18191        187 SLFFLSLVHGKKDTDSGVYWCVARNELGFA-RSKNATLDVA  226 (238)
Q Consensus       187 ~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~-~s~~~~L~V~  226 (238)
                      .|.    |..++.+|+|.|+|.|.|..+.. .+..+.|.|.
T Consensus        85 ~L~----I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~  121 (268)
T 3mj6_A           85 SLL----LQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL  121 (268)
T ss_dssp             CEE----ECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE
T ss_pred             EEE----ECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe
Confidence            444    67779999999999999986554 2346667665

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.74  E-value=4.9e-08  Score=77.53  Aligned_cols=90  Identities=18%  Similarity=0.389  Sum_probs=57.3

Q ss_pred             CCceEEeCCCcEEEEEEEeeeC--CCEEEEEeC--CE---Eeecc-----------CCccEEEec---CCcEEEEEeecC
Q psy18191        138 PASAVVPRHEPTTLNCKADGYP--EPRIEWYKD--GS---LVSAE-----------IGSHRILLP---AGSLFFLSLVHG  196 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~--g~---~l~~~-----------~~~~~~~~~---~~~l~~~~vi~~  196 (238)
                      |....+.+|+++.|.|.+.|.|  .|.+.|+++  +.   .+...           ...+.....   .+...  +.|..
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~--L~I~~   84 (257)
T 1f3r_B            7 SGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVF--LKMNS   84 (257)
T ss_dssp             ECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEE--EEEES
T ss_pred             CCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEE--EEECC
Confidence            3456789999999999999885  689999985  22   11100           011221111   22222  23777


Q ss_pred             CCCCCCeEEEEEEEeCCC-------ce-eEEEEEEEEccCC
Q psy18191        197 KKDTDSGVYWCVARNELG-------FA-RSKNATLDVAGKI  229 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N~~G-------~~-~s~~~~L~V~~~~  229 (238)
                      ++.+|+|.|.|.|.|..|       .. ....+.|.|...+
T Consensus        85 v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~  125 (257)
T 1f3r_B           85 LQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGG  125 (257)
T ss_dssp             CCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSC
T ss_pred             CCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCC
Confidence            899999999999999865       11 1124578887653

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=98.72  E-value=4.6e-08  Score=67.43  Aligned_cols=85  Identities=20%  Similarity=0.221  Sum_probs=57.9

Q ss_pred             CCceEEeCCCcEEEEEEE-eeeCCCEEEEEeCC-EEeec---c--------CCccEEEe--cCCcEEEEEeecCCCCCCC
Q psy18191        138 PASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDG-SLVSA---E--------IGSHRILL--PAGSLFFLSLVHGKKDTDS  202 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~-~g~P~p~i~W~~~g-~~l~~---~--------~~~~~~~~--~~~~l~~~~vi~~v~~~d~  202 (238)
                      +..+.+.+|++++|.|.. .+.+.+.+.|++.. ..+..   .        ....+...  ..+.|.    |..++.+|+
T Consensus        10 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~sL~----I~~v~~~Ds   85 (110)
T 2ptt_A           10 IPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALH----ISNVRKEDK   85 (110)
T ss_dssp             CCSEEEETTSCEEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECTTTCCEE----ESSCCGGGC
T ss_pred             CCCEEEecCCcEEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeCCCccEE----ECCCCcccC
Confidence            345788999999999998 77788899999842 22210   0        00112222  234454    677799999


Q ss_pred             eEEEEEEEeCCCceeEEEEEEEEccC
Q psy18191        203 GVYWCVARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       203 G~Y~C~a~N~~G~~~s~~~~L~V~~~  228 (238)
                      |.|.|.+.+.. ... ..+.|.|..+
T Consensus        86 G~Y~C~v~~~~-~~~-~~~~L~V~dp  109 (110)
T 2ptt_A           86 GTYYMRVLRET-ENE-LKITLEVFDP  109 (110)
T ss_dssp             EEEEEEEESSS-BCC-EEEEEEEECC
T ss_pred             eEEEEEEEcCC-CcE-EEEEEEEEcc
Confidence            99999998876 333 4788888653

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.72  E-value=7.2e-09  Score=79.73  Aligned_cols=82  Identities=10%  Similarity=0.033  Sum_probs=53.5

Q ss_pred             EeCCCceE-EeCCCcEEEEEEEeeeC---C-CEEEEEeCCEEeeccCCccEEEecCCcEE--EEEeecCCCCCCCeEEEE
Q psy18191        135 TEHPASAV-VPRHEPTTLNCKADGYP---E-PRIEWYKDGSLVSAEIGSHRILLPAGSLF--FLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       135 ~~~~~~~~-~~~G~~~~L~C~~~g~P---~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~--~~~vi~~v~~~d~G~Y~C  207 (238)
                      +..|.... +.+|+++.|.|.+.|.|   . +.+.|++++..+............++...  ..+.|..+..+|+|.|+|
T Consensus         6 ~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C   85 (207)
T 2vol_A            6 IFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKC   85 (207)
T ss_dssp             EECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEE
T ss_pred             EeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEE
Confidence            33444444 78999999999999885   2 48999999977642100000011222211  122356668899999999


Q ss_pred             EEEeCCCce
Q psy18191        208 VARNELGFA  216 (238)
Q Consensus       208 ~a~N~~G~~  216 (238)
                      .|.|..|..
T Consensus        86 ~a~~~~~~~   94 (207)
T 2vol_A           86 RVNSAAFPA   94 (207)
T ss_dssp             EEECTTCSS
T ss_pred             EEEccCCCC
Confidence            999998864

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.72  E-value=7e-08  Score=76.45  Aligned_cols=98  Identities=13%  Similarity=0.249  Sum_probs=62.6

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEee--eCCCEEEEEeCC--E---Eeecc------------CCccEEEe--cCCcE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADG--YPEPRIEWYKDG--S---LVSAE------------IGSHRILL--PAGSL  188 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g--~P~p~i~W~~~g--~---~l~~~------------~~~~~~~~--~~~~l  188 (238)
                      .+|.+...+..+.+.+|+++.|.|.+.+  .|.+.+.|++..  .   .+...            ...+....  ..+..
T Consensus         5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   84 (256)
T 3juy_B            5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT   84 (256)
T ss_dssp             --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred             cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence            4566777788899999999999999988  367899999732  1   11100            01111111  11111


Q ss_pred             EEEEeecCCCCCCCeEEEEEEEeC------------CCceeEEEEEEEEccCC
Q psy18191        189 FFLSLVHGKKDTDSGVYWCVARNE------------LGFARSKNATLDVAGKI  229 (238)
Q Consensus       189 ~~~~vi~~v~~~d~G~Y~C~a~N~------------~G~~~s~~~~L~V~~~~  229 (238)
                       ..+.|..++.+|+|.|.|.|.|.            .+... ..+.|.|...+
T Consensus        85 -~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~-~~~~l~V~~~~  135 (256)
T 3juy_B           85 -AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWG-KGTTVIVSSGG  135 (256)
T ss_dssp             -EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEEC-CCEEEEECSCC
T ss_pred             -EEEEECCCCcccCEEEEEeEEeccccccccccccceeEEC-CceEEeecCCc
Confidence             12337888999999999999997            33332 36678887653

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A

Probab=98.72  E-value=9.2e-08  Score=65.71  Aligned_cols=98  Identities=13%  Similarity=0.144  Sum_probs=64.1

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      ...+|.+...|.. .+..|+.++|.|..... ...+.|+|+|..+........... .........|..++.+|+|.|.|
T Consensus         6 ~~pkPsL~a~P~~-vv~~G~~VtL~C~~~~~-~~~f~l~k~g~~~~~~~~~~~~~~-~~~~~~~f~i~~vt~~~aG~Y~C   82 (106)
T 3kgr_A            6 DLPRPSISAEPGT-VIPLGSHVTFVCRGPVG-VQTFRLERESRSTYNDTEDVSQAS-PSESEARFRIDSVSEGNAGPYRC   82 (106)
T ss_dssp             CCCCCEEEEESCS-EEETTCCEEEEEEECTT-CCEEEEEEGGGTEEEEECCCEEEE-TTEEEEEEEESSCCGGGCEEEEE
T ss_pred             CCCCCEEEEeCCC-ccCCCCeEEEEEEccCC-CcEEEEEECCCccccccccccccC-CCCcceEEEecCCCcCCCceEEE
Confidence            3467888877665 77899999999997543 357999999865421001111111 11111122367789999999999


Q ss_pred             EEEeCCC-ceeEEEEEEEEccC
Q psy18191        208 VARNELG-FARSKNATLDVAGK  228 (238)
Q Consensus       208 ~a~N~~G-~~~s~~~~L~V~~~  228 (238)
                      ...|..+ +..|+.+.|.|.+.
T Consensus        83 ~~~~~~~~S~~Sdpl~L~Vtg~  104 (106)
T 3kgr_A           83 IYYKPPKWSEQSDYLELLVKEA  104 (106)
T ss_dssp             EEEETTEECCCCCCEEEEEECC
T ss_pred             EeeCCCcccCCCCCEEEEEeCC
Confidence            9998653 34467888888753

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=98.71  E-value=6.5e-08  Score=66.85  Aligned_cols=77  Identities=22%  Similarity=0.371  Sum_probs=50.4

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeC----CCEEEEEeCC--E---Eeecc-------CCccEEEe-cCCcEEEEEeecC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYP----EPRIEWYKDG--S---LVSAE-------IGSHRILL-PAGSLFFLSLVHG  196 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P----~p~i~W~~~g--~---~l~~~-------~~~~~~~~-~~~~l~~~~vi~~  196 (238)
                      +...|..+.+.+|+++.|.|.+.+.+    .+.+.|++..  .   .+...       ...+.... ..+...  +.|..
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~--L~I~~   81 (111)
T 1j05_L            4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFT--LIIDP   81 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEE--EEESS
T ss_pred             EEEeCCEEEEeCCCCEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEccCCEEE--EEECC
Confidence            34446678889999999999998776    4779999852  2   12110       01111111 122222  23788


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy18191        197 KKDTDSGVYWCVARNE  212 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N~  212 (238)
                      ++.+|+|.|.|.+.|.
T Consensus        82 v~~~DsG~Y~C~~~~~   97 (111)
T 1j05_L           82 VEADDVATYYCQQTNE   97 (111)
T ss_dssp             CCGGGCEEEEEEECSS
T ss_pred             CCcccCEEEEEEEecC
Confidence            8999999999999885

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=98.71  E-value=1.2e-07  Score=74.35  Aligned_cols=94  Identities=20%  Similarity=0.331  Sum_probs=58.2

Q ss_pred             CEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEe--------------CCEEeeccCC--ccEEEecCCcEEEEEeec
Q psy18191        132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK--------------DGSLVSAEIG--SHRILLPAGSLFFLSLVH  195 (238)
Q Consensus       132 P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~--------------~g~~l~~~~~--~~~~~~~~~~l~~~~vi~  195 (238)
                      +.++..|..+.+.+|+++.|.| ..+.|.+.+.|+|              ++..+.....  .+......+.-...+.|.
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~   81 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQ   81 (245)
T ss_dssp             CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEEC
T ss_pred             cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEEC
Confidence            3455566778899999999999 7788899999998              2222211110  222222111111122378


Q ss_pred             CCCCCCCeEEEEEEEeCC----CceeEEEEEEEEcc
Q psy18191        196 GKKDTDSGVYWCVARNEL----GFARSKNATLDVAG  227 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~N~~----G~~~s~~~~L~V~~  227 (238)
                      .++.+|+|.|.|.+.+..    +.. ...+.|.|..
T Consensus        82 ~v~~~D~G~Y~C~~~~~~~~~~~~~-~~~~~l~V~~  116 (245)
T 4ei6_B           82 PTALEDSAVYFCASSFWGAYAEQFF-GPGTRLTVLE  116 (245)
T ss_dssp             SCCGGGCEEEEEEEECSSTTCCCEE-CCCEEEEEES
T ss_pred             CCCHhHCEEEEEEEccCCCcceEEE-cCCcEEEEec
Confidence            889999999999999632    222 2355677764

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=98.70  E-value=4.1e-08  Score=69.66  Aligned_cols=96  Identities=22%  Similarity=0.335  Sum_probs=57.2

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeee-CCCEEEEEeCCE----EeeccCC---ccEEEe--------cCCcEEEEEeecCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGY-PEPRIEWYKDGS----LVSAEIG---SHRILL--------PAGSLFFLSLVHGK  197 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~-P~p~i~W~~~g~----~l~~~~~---~~~~~~--------~~~~l~~~~vi~~v  197 (238)
                      +...|..+.+.+|++++|.|.+.+. |.+.+.|++++.    .+.....   .+....        ....|.    |..+
T Consensus         6 v~q~p~~~~v~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~li~~~~~~~~~r~~~~~~~~~~~~~~~~L~----I~~v   81 (127)
T 2jju_A            6 VIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSIS----ISNI   81 (127)
T ss_dssp             EECCCSEEEEETTSCEEECCEESCCCSCCCEEEEECSSTTCEEEEESSSSCCTTEEEC-------CCBCCEE----ECSC
T ss_pred             EEeeCCeEEEeCCCCEEEEEEEeCCCCCCEEEEEecCCCCcEEEEECCCCccCcEEeeEeeeecCCCEEEEE----ECCC
Confidence            3444567889999999999999765 678899999752    1211100   111110        012333    6777


Q ss_pred             CCCCCeEEEEEEEeCCCc--e---eEEEEEEEEccCCCCCC
Q psy18191        198 KDTDSGVYWCVARNELGF--A---RSKNATLDVAGKISTAT  233 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N~~G~--~---~s~~~~L~V~~~~~~~~  233 (238)
                      +.+|+|.|.|.+.|..+.  .   ...-..|.|.+....|.
T Consensus        82 ~~~DsG~Y~C~~~~~~~~~~~~~~fg~GT~L~V~~~~~~~~  122 (127)
T 2jju_A           82 TPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPSTRH  122 (127)
T ss_dssp             CGGGCEEEEEEEEECCSSSCEEEEECCCEEEEEEC------
T ss_pred             CHHHCEEEEEEEEcCCCCccceEEeCCCeEEEEeecCCCcc
Confidence            999999999999986321  1   11135788877666554

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=98.70  E-value=5.5e-08  Score=67.60  Aligned_cols=78  Identities=21%  Similarity=0.321  Sum_probs=50.9

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeC--CCEEEEEeCC--EE---eeccCCccEE-EecCCcEEEEEeecCCCCCCCeEE
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYP--EPRIEWYKDG--SL---VSAEIGSHRI-LLPAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~g--~~---l~~~~~~~~~-~~~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                      +...|..+.+.+|++++|.|.+.+.+  .+.+.|+++.  ..   +... ..+.. ..........+.|..++.+|+|.|
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~-~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y   81 (113)
T 1sq2_N            3 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISK-GGRYVETVNSGSKSFSLRINDLTVEDGGTY   81 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCC-BTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             eEeCCccEEEecCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceEeEEe-CCCEEEEEeCCCCEEEEEECCCChhhCEEE
Confidence            34456778899999999999998765  5789999852  21   1111 12221 111111122233788899999999


Q ss_pred             EEEEEeC
Q psy18191        206 WCVARNE  212 (238)
Q Consensus       206 ~C~a~N~  212 (238)
                      .|.+.|.
T Consensus        82 ~C~~~~~   88 (113)
T 1sq2_N           82 RCGLGVA   88 (113)
T ss_dssp             EEEECBT
T ss_pred             EEEEEeC
Confidence            9999983

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.70  E-value=4.5e-08  Score=76.54  Aligned_cols=76  Identities=18%  Similarity=0.313  Sum_probs=47.1

Q ss_pred             CCceEEeCCCcEEEEEEEeee-CC-CEEEEEe-CCEEeeccCCccEEEecCCcEEE--EEeecCCCCCCCeEEEEEEEeC
Q psy18191        138 PASAVVPRHEPTTLNCKADGY-PE-PRIEWYK-DGSLVSAEIGSHRILLPAGSLFF--LSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~-P~-p~i~W~~-~g~~l~~~~~~~~~~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      |....+..|+.+.|.|.+.|. |. +.+.|++ +|..+....... ....++....  ...|..+.. | |.|+|.+.|.
T Consensus       137 p~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l~~~~~~~-~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~  213 (230)
T 1ypz_F          137 PSVAETNLHKTGTYLCLLEAFFPDVIRVYWKEKDGNTILDSQEGD-TLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHE  213 (230)
T ss_dssp             CCHHHHHHHSCEEEEEEEEEESSCCCEEEEECTTSSCBCCCEECC-CEEETTEEEEEEEEEECGGGT-T-SCEEEEEECS
T ss_pred             CCchhhccCCcceEEEEEeeecCCCeEEEEEccCCeEccccccce-eecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEEC
Confidence            344445568999999999887 75 5999999 887664211111 1123443322  122333333 4 9999999998


Q ss_pred             CCce
Q psy18191        213 LGFA  216 (238)
Q Consensus       213 ~G~~  216 (238)
                      .+..
T Consensus       214 ~~~~  217 (230)
T 1ypz_F          214 NNKG  217 (230)
T ss_dssp             SCTT
T ss_pred             CCCC
Confidence            8754

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.70  E-value=2.3e-08  Score=79.92  Aligned_cols=97  Identities=13%  Similarity=0.287  Sum_probs=60.8

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeC-----CCEEEEEeCC--E---Eeecc-------CCccEEEe-cCCcEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYP-----EPRIEWYKDG--S---LVSAE-------IGSHRILL-PAGSLFFL  191 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P-----~p~i~W~~~g--~---~l~~~-------~~~~~~~~-~~~~l~~~  191 (238)
                      ..+.+...|..+.+.+|+++.|.|.+.+.|     .+.+.|+++.  .   .+...       ...+.... .++...  
T Consensus        14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~--   91 (268)
T 1x9q_A           14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFT--   91 (268)
T ss_dssp             CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEE--
T ss_pred             ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEE--
Confidence            445666667778899999999999998887     4889999853  2   11110       01111111 122222  


Q ss_pred             EeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccC
Q psy18191        192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       192 ~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~  228 (238)
                      +.|..++.+|+|.|.|.+.|..+......+.|.|...
T Consensus        92 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~  128 (268)
T 1x9q_A           92 LKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSS  128 (268)
T ss_dssp             EEESSCCGGGCEEEEEEECSSSSCEECCCEEEC----
T ss_pred             EEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccC
Confidence            2378889999999999999986543223456777654

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=98.69  E-value=6.8e-08  Score=68.35  Aligned_cols=83  Identities=22%  Similarity=0.244  Sum_probs=55.0

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCC----EEEEEeCC----------------EEeecc-CCccEEE-ecCC---------
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEP----RIEWYKDG----------------SLVSAE-IGSHRIL-LPAG---------  186 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p----~i~W~~~g----------------~~l~~~-~~~~~~~-~~~~---------  186 (238)
                      |..+.+.+|+++.|.|...+.+.+    .+.|+++.                ..+... ....+.. ..++         
T Consensus         9 p~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~~   88 (128)
T 3r0n_A            9 LPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEA   88 (128)
T ss_dssp             CSEEECCTTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCCC
T ss_pred             CCeEEEEcCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEecccccccccccc
Confidence            456778899999999999887666    79999962                111110 0111222 2221         


Q ss_pred             -----cEEEEEeecCCCCCCCeEEEEEEEe-CCCceeEEEEEEEE
Q psy18191        187 -----SLFFLSLVHGKKDTDSGVYWCVARN-ELGFARSKNATLDV  225 (238)
Q Consensus       187 -----~l~~~~vi~~v~~~d~G~Y~C~a~N-~~G~~~s~~~~L~V  225 (238)
                           .|.    |.+++.+|+|.|.|.+.+ ..|... ..+.|.|
T Consensus        89 ~~~~~sL~----I~~v~~~D~G~Y~C~v~~~~~g~~~-~~~~L~V  128 (128)
T 3r0n_A           89 ELQDATLA----LHGLTVEDEGNYTCEFATFPKGSVR-GMTWLRV  128 (128)
T ss_dssp             BCSBCCEE----ECSCCGGGCEEEEEEEEEETTEEEE-EEEEEEC
T ss_pred             CCCCeEEE----EccCCchhCeEEEEEEEeCCCCCcc-cEEEEEC
Confidence                 444    677799999999997655 667775 5777765

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.69  E-value=9.8e-08  Score=75.85  Aligned_cols=90  Identities=23%  Similarity=0.419  Sum_probs=58.2

Q ss_pred             CCceEEeCCCcEEEEEEEeeeC--CCEEEEEeC--CEEee---cc------------CCccEEEec---CCcEEEEEeec
Q psy18191        138 PASAVVPRHEPTTLNCKADGYP--EPRIEWYKD--GSLVS---AE------------IGSHRILLP---AGSLFFLSLVH  195 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~--g~~l~---~~------------~~~~~~~~~---~~~l~~~~vi~  195 (238)
                      |..+.+.+|+++.|.|.+.|.|  .+.+.|+++  +..+.   ..            ...+.....   .+...  +.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~--L~I~   84 (256)
T 1nqb_A            7 SGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAY--MQLS   84 (256)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEE--EEEC
T ss_pred             CCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEE--EEEC
Confidence            5568899999999999998875  689999984  22221   00            011221111   12222  2378


Q ss_pred             CCCCCCCeEEEEEEEeCCCc----eeEEEEEEEEccCC
Q psy18191        196 GKKDTDSGVYWCVARNELGF----ARSKNATLDVAGKI  229 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~N~~G~----~~s~~~~L~V~~~~  229 (238)
                      .++.+|+|.|.|.|.|..|.    .....+.|.|..++
T Consensus        85 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~  122 (256)
T 1nqb_A           85 SLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDI  122 (256)
T ss_dssp             SCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCC
T ss_pred             cCChhhCEEEEEEEeeccCccceeEEcCceeeeecccc
Confidence            88999999999999999773    11124677776544

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.69  E-value=7.1e-08  Score=75.55  Aligned_cols=92  Identities=13%  Similarity=0.156  Sum_probs=56.2

Q ss_pred             EEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--------------CEEeeccC-CccEEEec--CCcEEEEEeec
Q psy18191        133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--------------GSLVSAEI-GSHRILLP--AGSLFFLSLVH  195 (238)
Q Consensus       133 ~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--------------g~~l~~~~-~~~~~~~~--~~~l~~~~vi~  195 (238)
                      .+...|..+.+.+|+++.|.|.+.+ |.+.+.|+|.              +....... ..+.....  .+...  +.|.
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~s--L~I~   80 (240)
T 3q5y_A            4 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSE--MNMS   80 (240)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEE--EEEC
T ss_pred             ccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEE--EEEC
Confidence            3445567788999999999999876 8889999982              11111110 11222221  12222  2378


Q ss_pred             CCCCCCCeEEEEEEEeC--CCceeEEEEEEEEcc
Q psy18191        196 GKKDTDSGVYWCVARNE--LGFARSKNATLDVAG  227 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~N~--~G~~~s~~~~L~V~~  227 (238)
                      .++.+|+|.|.|.+.+.  ........+.|.|..
T Consensus        81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  114 (240)
T 3q5y_A           81 ALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLE  114 (240)
T ss_dssp             SCCGGGCEEEEEEEESSTTBCCEECCCEEEEEES
T ss_pred             cCChhHCEEEEEEEccCCCcceEEcCCEEEEEec
Confidence            88999999999999832  212212345677754

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.69  E-value=1.3e-07  Score=76.19  Aligned_cols=93  Identities=15%  Similarity=0.342  Sum_probs=58.3

Q ss_pred             eCCCceEEeCCCcEEEEEEEeeeC--CCEEEEEeCC--EEe---ec------------cCCccEEEec--CCcEEEEEee
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGYP--EPRIEWYKDG--SLV---SA------------EIGSHRILLP--AGSLFFLSLV  194 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~g--~~l---~~------------~~~~~~~~~~--~~~l~~~~vi  194 (238)
                      ..|..+.+.+|+++.|.|.+.|.|  .+.+.|++++  ..+   ..            ....+.....  .+.. ..+.|
T Consensus        31 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~-~sL~I  109 (282)
T 1qok_A           31 QQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNT-AYLQL  109 (282)
T ss_dssp             EECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTE-EEEEE
T ss_pred             ECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCe-EEEEE
Confidence            346678899999999999998875  6899999853  111   10            0011111111  1111 12237


Q ss_pred             cCCCCCCCeEEEEEEEeCCCc---e-eEEEEEEEEccCC
Q psy18191        195 HGKKDTDSGVYWCVARNELGF---A-RSKNATLDVAGKI  229 (238)
Q Consensus       195 ~~v~~~d~G~Y~C~a~N~~G~---~-~s~~~~L~V~~~~  229 (238)
                      ..++.+|+|.|.|.+.|..|.   . ....+.|.|...+
T Consensus       110 ~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~  148 (282)
T 1qok_A          110 SSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGG  148 (282)
T ss_dssp             CSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC--
T ss_pred             CcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCC
Confidence            888999999999999999872   1 1124578887654

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=98.69  E-value=1.6e-07  Score=68.11  Aligned_cols=96  Identities=18%  Similarity=0.336  Sum_probs=57.8

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC-----EEeecc-------CCccEEE-ecCCcEEEEEeecCCCCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG-----SLVSAE-------IGSHRIL-LPAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g-----~~l~~~-------~~~~~~~-~~~~~l~~~~vi~~v~~~  200 (238)
                      ++..|..+.+.+|++++|.|.+.+.+.+.+.|++..     ..+...       ...+... .......  +.|..++.+
T Consensus         3 v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~s--L~I~~l~~~   80 (143)
T 3u6r_L            3 LTQSPATLSLSPGERATLSCRASQSVNKYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFT--LTISNLEPE   80 (143)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEE--EEECSCCGG
T ss_pred             EEECCCEEEEeCCCCEEEEEEECCCCceeeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEccCCEEE--EEEccCccc
Confidence            445566788999999999999987777789999842     222111       0111111 1222222  337888999


Q ss_pred             CCeEEEEEEEeCCCceeEEEEEEEEccCCCCC
Q psy18191        201 DSGVYWCVARNELGFARSKNATLDVAGKISTA  232 (238)
Q Consensus       201 d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~~  232 (238)
                      |+|.|.|.+.+.. .....-..|.|.+....|
T Consensus        81 DsG~Y~C~~~~~~-~~fg~gt~L~V~~~~~~p  111 (143)
T 3u6r_L           81 DFAVYYCQQRSDW-VTFGGGTKVEIKAAADDD  111 (143)
T ss_dssp             GCEEEEEEECSSB-CEECCCEEEEEC------
T ss_pred             CCEEEEEEEecCC-CEECCCEEEEECCCCCCC
Confidence            9999999998764 221224577776654333

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.68  E-value=1.6e-08  Score=75.97  Aligned_cols=72  Identities=17%  Similarity=0.240  Sum_probs=51.1

Q ss_pred             ceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeecc--C---------CccEEEe-----cCCc--EEEEEeecCCCCCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--I---------GSHRILL-----PAGS--LFFLSLVHGKKDTD  201 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~--~---------~~~~~~~-----~~~~--l~~~~vi~~v~~~d  201 (238)
                      .+.+.+|+++.|.|.+.+.|.+.+.|++++..+...  .         ...+...     .++.  |.    |..++.+|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~----i~~v~~~D   79 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLI----IKNLKIED   79 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEE----ECSCCGGG
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEE----EecCCHHH
Confidence            467889999999999999999999999998632110  0         0111111     2223  44    66779999


Q ss_pred             CeEEEEEEEeCCCc
Q psy18191        202 SGVYWCVARNELGF  215 (238)
Q Consensus       202 ~G~Y~C~a~N~~G~  215 (238)
                      +|.|+|.+.|..|.
T Consensus        80 ~G~Y~C~~~~~~~~   93 (184)
T 2ny1_B           80 SDTYICEVEDQKEE   93 (184)
T ss_dssp             CEEEEEEETTEEEE
T ss_pred             CEEEEEEEEcCCCc
Confidence            99999999988653

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.68  E-value=5e-08  Score=77.19  Aligned_cols=93  Identities=16%  Similarity=0.263  Sum_probs=59.4

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeC--CCEEEEEeC--CEEee---------------ccCCccEEEe-cCCcEEEEEee
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYP--EPRIEWYKD--GSLVS---------------AEIGSHRILL-PAGSLFFLSLV  194 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~--g~~l~---------------~~~~~~~~~~-~~~~l~~~~vi  194 (238)
                      +..|..+.+.+|+++.|.|.+.|.+  .+.+.|++.  +..+.               .....+.... ....-...+.|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   84 (253)
T 3uzq_A            5 LEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHL   84 (253)
T ss_dssp             EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEe
Confidence            3445678899999999999998854  789999982  21110               0001111111 11111111237


Q ss_pred             cCCCCCCCeEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191        195 HGKKDTDSGVYWCVARNELGFARSKNATLDVAG  227 (238)
Q Consensus       195 ~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~  227 (238)
                      ..++.+|+|.|.|.|.|..+......+.|.|..
T Consensus        85 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~  117 (253)
T 3uzq_A           85 SSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSA  117 (253)
T ss_dssp             CSCCGGGCEEEEEEECSSSCCEECCCEEEEECS
T ss_pred             CCCCcccCEEEEEEEeeCCccEECCCcEEEEec
Confidence            888999999999999997766533466788875

>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, domain swapping, collagen receptor, structural genomics; 1.76A {Mus musculus}

Probab=98.67  E-value=3.3e-07  Score=62.51  Aligned_cols=89  Identities=19%  Similarity=0.182  Sum_probs=61.1

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCC----CEEEEEeCCEEeeccCCccEEEe-cCCcEEEEEeecCCCCCCCe
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPE----PRIEWYKDGSLVSAEIGSHRILL-PAGSLFFLSLVHGKKDTDSG  203 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~----p~i~W~~~g~~l~~~~~~~~~~~-~~~~l~~~~vi~~v~~~d~G  203 (238)
                      ..+|.+...|. ..+..|+.++|.| ... ..    -.+.|+|+|.....     .... ....-.+  .|..++..|+|
T Consensus         7 lpkPsL~a~p~-~~v~~G~~VTL~C-~~~-~~~~~~~~f~l~k~g~~~~~-----~~~~~~~~~a~f--~i~~vt~~~aG   76 (102)
T 4esk_A            7 LPDITIFPNSS-LMISQGTFVTVVC-SYS-DKHDLYNMVRLEKDGSTFME-----KSTEPYKTEDEF--EIGPVNETITG   76 (102)
T ss_dssp             CCEEEEECCSE-EEEETTCCEEEEE-ECT-TTGGGCCEEEEEETTEEEEE-----EECCSSCSEEEE--EECSCCGGGCE
T ss_pred             CCCCEEEEeCC-CcccCCCcEEEEE-CCC-cCCCcccEEEEEECCccccc-----cccCCCCcceEE--EeCcCCcccCe
Confidence            35677766654 5678999999999 632 33    57999999975431     1111 1122222  26778999999


Q ss_pred             EEEEEEEeCCC-ceeEEEEEEEEcc
Q psy18191        204 VYWCVARNELG-FARSKNATLDVAG  227 (238)
Q Consensus       204 ~Y~C~a~N~~G-~~~s~~~~L~V~~  227 (238)
                      .|.|...+..+ +..|+.+.|.|.+
T Consensus        77 ~Y~C~~~~~~~~S~~Sdpl~L~VtG  101 (102)
T 4esk_A           77 HYSCIYSKGITWSERSKTLELKVIK  101 (102)
T ss_dssp             EEEEEEEETTTEEEECCCEEEEEEC
T ss_pred             eEEEEEeCCCccccCcCCEEEEEEe
Confidence            99999999876 4456788888865

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=98.67  E-value=7.1e-08  Score=66.49  Aligned_cols=85  Identities=13%  Similarity=0.241  Sum_probs=53.0

Q ss_pred             CceEEeCCCcEEEEEEEeeeC-CCEEEEEeCCE--E---eec-cC-----CccEEEe---cCCcEEEEEeecCCCCCCCe
Q psy18191        139 ASAVVPRHEPTTLNCKADGYP-EPRIEWYKDGS--L---VSA-EI-----GSHRILL---PAGSLFFLSLVHGKKDTDSG  203 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P-~p~i~W~~~g~--~---l~~-~~-----~~~~~~~---~~~~l~~~~vi~~v~~~d~G  203 (238)
                      ..+.+.+|++++|.|...+.. .+.+.|++...  .   +.. ..     .++....   ..+...  +.|..++.+|+|
T Consensus         4 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~--L~I~~~~~~DsG   81 (110)
T 2q87_A            4 RTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFT--VTLENLTEEDAG   81 (110)
T ss_dssp             EEEEECTTSCEEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEE--EEESSCCGGGCE
T ss_pred             cEEEEeCCCcEEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEE--EEEccCCHHHCE
Confidence            457789999999999986654 47899998642  1   110 00     0111111   122222  337888999999


Q ss_pred             EEEEEEEeCC-C--ceeEEEEEEEE
Q psy18191        204 VYWCVARNEL-G--FARSKNATLDV  225 (238)
Q Consensus       204 ~Y~C~a~N~~-G--~~~s~~~~L~V  225 (238)
                      .|.|.+.+.. |  ......+.|.|
T Consensus        82 ~Y~C~~~~~~~g~~~~~~~~v~v~V  106 (110)
T 2q87_A           82 TYWCGVDTPWLQDFHDPVVEVEVSV  106 (110)
T ss_dssp             EEEEEEECTTSCCBCCCSEEEEEEE
T ss_pred             EEEEEEecCccCccCCccEEEEEEE
Confidence            9999999986 5  33223555555

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=98.67  E-value=6.9e-08  Score=66.52  Aligned_cols=74  Identities=19%  Similarity=0.324  Sum_probs=48.4

Q ss_pred             CCceEEeCCCcEEEEEE-EeeeC-CCEEEEEeCCEEe---ecc-------CCccEEEe--cCCcEEEEEeecCCCCCCCe
Q psy18191        138 PASAVVPRHEPTTLNCK-ADGYP-EPRIEWYKDGSLV---SAE-------IGSHRILL--PAGSLFFLSLVHGKKDTDSG  203 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~-~~g~P-~p~i~W~~~g~~l---~~~-------~~~~~~~~--~~~~l~~~~vi~~v~~~d~G  203 (238)
                      |..+.+.+|++++|.|. +.+.+ .+.+.|++....+   ...       ...+....  ..+. ...+.|..++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~-~~~L~I~~v~~~DsG   85 (109)
T 1pew_A            7 PHSVSESPGKTVTISCTRSSGNIASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSN-SASLTISGLKTEDEA   85 (109)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTT-EEEEEECSCCGGGCE
T ss_pred             CCCEEEcCCCCEEEEEEeCCCCCCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCC-EEEEEECCCChhhCE
Confidence            56788999999999999 77665 4789999876211   110       01122211  1221 122337888999999


Q ss_pred             EEEEEEEeC
Q psy18191        204 VYWCVARNE  212 (238)
Q Consensus       204 ~Y~C~a~N~  212 (238)
                      .|.|.+.|.
T Consensus        86 ~Y~C~~~~~   94 (109)
T 1pew_A           86 DYYCQSYDA   94 (109)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEEEEeC
Confidence            999999985

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.67  E-value=1.8e-07  Score=74.06  Aligned_cols=95  Identities=13%  Similarity=0.230  Sum_probs=56.5

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeee--CCCEEEEEeCC--E--Eee----c--------cCCccEEEec-CCcEEEEEee
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGY--PEPRIEWYKDG--S--LVS----A--------EIGSHRILLP-AGSLFFLSLV  194 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~--P~p~i~W~~~g--~--~l~----~--------~~~~~~~~~~-~~~l~~~~vi  194 (238)
                      .+..|..+.+.+|+++.|.|.+.+.  |.+.+.|++..  .  .+.    .        ....+..... .......+.|
T Consensus        11 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   90 (257)
T 3gkz_A           11 QLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQL   90 (257)
T ss_dssp             EEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred             EEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEE
Confidence            3444667789999999999999884  57899999832  1  111    0        0011111111 1101112237


Q ss_pred             cCCCCCCCeEEEEEEEeCCCce---eEEEEEEEEccC
Q psy18191        195 HGKKDTDSGVYWCVARNELGFA---RSKNATLDVAGK  228 (238)
Q Consensus       195 ~~v~~~d~G~Y~C~a~N~~G~~---~s~~~~L~V~~~  228 (238)
                      ..++.+|+|.|.|.|.|..+..   ....+.|.|..+
T Consensus        91 ~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~  127 (257)
T 3gkz_A           91 KSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGG  127 (257)
T ss_dssp             CSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC--
T ss_pred             CCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCc
Confidence            8889999999999999973211   123557777765

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.66  E-value=2.4e-07  Score=71.46  Aligned_cols=88  Identities=17%  Similarity=0.436  Sum_probs=56.5

Q ss_pred             CCceEEeCCCcEEEEEEEeeeC--CCEEEEEeCC--EE---eec-cC-------------CccEEEe---cCCcEEEEEe
Q psy18191        138 PASAVVPRHEPTTLNCKADGYP--EPRIEWYKDG--SL---VSA-EI-------------GSHRILL---PAGSLFFLSL  193 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~g--~~---l~~-~~-------------~~~~~~~---~~~~l~~~~v  193 (238)
                      |..+.+.+|+++.|.|.+.+.|  .+.+.|++++  ..   +.. ..             ..+....   ..+...  +.
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~--L~   84 (220)
T 1pz5_B            7 SGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVY--LQ   84 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEE--EE
T ss_pred             cCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEE--EE
Confidence            4567889999999999998876  7899999853  21   110 00             1122111   122222  23


Q ss_pred             ecCCCCCCCeEEEEEEEeCCCce--eEEEEEEEEcc
Q psy18191        194 VHGKKDTDSGVYWCVARNELGFA--RSKNATLDVAG  227 (238)
Q Consensus       194 i~~v~~~d~G~Y~C~a~N~~G~~--~s~~~~L~V~~  227 (238)
                      |..++.+|+|.|.|.+.|..|..  ....+.|.|..
T Consensus        85 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  120 (220)
T 1pz5_B           85 MNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSS  120 (220)
T ss_dssp             ECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECS
T ss_pred             EccCCHHHCEEEEEEEecCCcccceECCCEEEEEcc
Confidence            78889999999999999986532  11245777763

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=98.66  E-value=2.7e-07  Score=63.90  Aligned_cols=78  Identities=17%  Similarity=0.341  Sum_probs=50.6

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeC-----CCEEEEEeCC--E---Eeecc-------CCccEEEe-cCCcEEEEEeec
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYP-----EPRIEWYKDG--S---LVSAE-------IGSHRILL-PAGSLFFLSLVH  195 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P-----~p~i~W~~~g--~---~l~~~-------~~~~~~~~-~~~~l~~~~vi~  195 (238)
                      +...|..+.+.+|++++|.|.+.+.+     .+.+.|++..  .   .+...       ...+.... ..+...  +.|.
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~--L~I~   81 (113)
T 1dlf_L            4 MTQTPLSLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFT--LKIS   81 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEE--EEEC
T ss_pred             EEEeCCEEEEcCCCCEEEEEEccccccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEccCCEEE--EEEC
Confidence            34446678899999999999997765     4789999842  1   12110       01111111 122222  2378


Q ss_pred             CCCCCCCeEEEEEEEeCC
Q psy18191        196 GKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~N~~  213 (238)
                      .++.+|+|.|.|.+.|..
T Consensus        82 ~v~~~DsG~Y~C~~~~~~   99 (113)
T 1dlf_L           82 RVEAEDLGVYFCSQSTHV   99 (113)
T ss_dssp             SCCGGGCEEEEEEECSSS
T ss_pred             CCChHHCEEEEEEEecCC
Confidence            889999999999998763

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=98.66  E-value=8.2e-08  Score=68.39  Aligned_cols=94  Identities=23%  Similarity=0.279  Sum_probs=59.9

Q ss_pred             eCCCceEEeCCCcEEEEEEEeeeC-CCEEEEEeC--CE---Eeec-cC------CccEEEec--CCcEEEEEeecCCCCC
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGYP-EPRIEWYKD--GS---LVSA-EI------GSHRILLP--AGSLFFLSLVHGKKDT  200 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~P-~p~i~W~~~--g~---~l~~-~~------~~~~~~~~--~~~l~~~~vi~~v~~~  200 (238)
                      ..|..+.+.+|++++|.|...+.+ ...+.|++.  +.   .+.. ..      ...++...  .......+.|..++.+
T Consensus         6 Q~P~~~~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~   85 (129)
T 3rrq_A            6 FSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRN   85 (129)
T ss_dssp             EECSEEEEETTSCEEEEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSCCGG
T ss_pred             ECCCEEEEeCCCCEEEEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCCChh
Confidence            346678899999999999987764 467999973  21   1111 00      01122221  1111222337888999


Q ss_pred             CCeEEEEEEEeCCCce---eEEEEEEEEccCC
Q psy18191        201 DSGVYWCVARNELGFA---RSKNATLDVAGKI  229 (238)
Q Consensus       201 d~G~Y~C~a~N~~G~~---~s~~~~L~V~~~~  229 (238)
                      |+|.|.|.+.|..+..   .+..+.|.|...+
T Consensus        86 Dsg~Y~C~~~~~~~~~~~~~s~~~~L~V~~~~  117 (129)
T 3rrq_A           86 DSGTYLCGAISLAPKLQIKESLRAELRVTERR  117 (129)
T ss_dssp             GCEEEEEEEEECGGGCEEEECCCEEEEEECCC
T ss_pred             HCEEEEEEEEecCCCceeeEeceEEEEEecCc
Confidence            9999999999987765   1236788887654

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.66  E-value=2.3e-08  Score=77.87  Aligned_cols=93  Identities=17%  Similarity=0.234  Sum_probs=57.6

Q ss_pred             CEEEeCCCceEEeCCCcEEEEEEEeeeCC-C-EEEEEeCC--EEe---ec-------cCCccEEE-ecCCcEEEEEeecC
Q psy18191        132 PRITEHPASAVVPRHEPTTLNCKADGYPE-P-RIEWYKDG--SLV---SA-------EIGSHRIL-LPAGSLFFLSLVHG  196 (238)
Q Consensus       132 P~i~~~~~~~~~~~G~~~~L~C~~~g~P~-p-~i~W~~~g--~~l---~~-------~~~~~~~~-~~~~~l~~~~vi~~  196 (238)
                      +.+.. |..+.+.+|+++.|.|.+.+.+. + .+.|++++  ..+   ..       ....+... ...+...  ..|..
T Consensus        21 ~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--L~I~~   97 (234)
T 2j6e_L           21 SVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSAS--LAISG   97 (234)
T ss_dssp             CCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEE--EEEES
T ss_pred             cEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEE--EEECC
Confidence            33334 66778899999999999988654 4 79999863  221   10       00111111 1122222  23677


Q ss_pred             CCCCCCeEEEEEEEeCCCc--eeEEEEEEEEcc
Q psy18191        197 KKDTDSGVYWCVARNELGF--ARSKNATLDVAG  227 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N~~G~--~~s~~~~L~V~~  227 (238)
                      ++.+|+|.|.|.|.|..|.  .....+.|.|..
T Consensus        98 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  130 (234)
T 2j6e_L           98 LRSEDEADYYCATWDDSLSAVIFGGGTKLTVLG  130 (234)
T ss_dssp             CCSTTCSEEEEEEEETTTTEEEECCCBCCCBCC
T ss_pred             CCHHHCEEEEEEEEcCCcceeEecCCEEEEEec
Confidence            7999999999999999882  212245677743

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.66  E-value=2.6e-07  Score=71.93  Aligned_cols=89  Identities=20%  Similarity=0.358  Sum_probs=56.9

Q ss_pred             CCCceEEeCCCcEEEEEEEeeeC--CCEEEEEeCC--EEee----cc-----------CCccEEEec---CCcEEEEEee
Q psy18191        137 HPASAVVPRHEPTTLNCKADGYP--EPRIEWYKDG--SLVS----AE-----------IGSHRILLP---AGSLFFLSLV  194 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~g--~~l~----~~-----------~~~~~~~~~---~~~l~~~~vi  194 (238)
                      .|..+.+.+|+++.|.|.+.+.|  .+.+.|++++  ..+.    ..           ...+.....   .+...  +.|
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s--L~I   83 (227)
T 1mju_H            6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAY--MQL   83 (227)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEE--EEE
T ss_pred             CCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEE--EEE
Confidence            35567889999999999999877  6889999853  2111    00           011221111   12222  237


Q ss_pred             cCCCCCCCeEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191        195 HGKKDTDSGVYWCVARNELGFARSKNATLDVAG  227 (238)
Q Consensus       195 ~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~  227 (238)
                      ..++.+|+|.|.|.+.|..+......+.|.|..
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~  116 (227)
T 1mju_H           84 SSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSA  116 (227)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEECCCEEEEECS
T ss_pred             CCCCcccCEEEEEEECCCCceEEcCcEEEEEcC
Confidence            888999999999999996432211245777765

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.65  E-value=6.9e-08  Score=76.38  Aligned_cols=90  Identities=18%  Similarity=0.275  Sum_probs=56.3

Q ss_pred             CCceEEeCCCcEEEEEEEeee--CCCEEEEEeCC--E---Eeecc-------CCccEEEe-cCCcEEEEEeecCCCCCCC
Q psy18191        138 PASAVVPRHEPTTLNCKADGY--PEPRIEWYKDG--S---LVSAE-------IGSHRILL-PAGSLFFLSLVHGKKDTDS  202 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~--P~p~i~W~~~g--~---~l~~~-------~~~~~~~~-~~~~l~~~~vi~~v~~~d~  202 (238)
                      |..+.+.+|+++.|.|.+.+.  |.+.+.|+|+.  .   .+...       ...+.... .++..  .+.|..++.+|+
T Consensus         9 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~L~I~~v~~~Ds   86 (256)
T 3ux9_B            9 PPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSA--SLAITGLQSEDE   86 (256)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEE--EEEECSCCGGGC
T ss_pred             CCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEE--EEEECCCChhhC
Confidence            345788999999999999887  78899999842  1   11110       01111111 12221  223788899999


Q ss_pred             eEEEEEEEeCCCce--eEEEEEEEEccCC
Q psy18191        203 GVYWCVARNELGFA--RSKNATLDVAGKI  229 (238)
Q Consensus       203 G~Y~C~a~N~~G~~--~s~~~~L~V~~~~  229 (238)
                      |.|.|.|.|..|..  ....+.|.|...+
T Consensus        87 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~  115 (256)
T 3ux9_B           87 ADYYCQVRDNNENEWVFGGGTKLTVLGSG  115 (256)
T ss_dssp             EEEEEEEEETTTTEEEECCCEEEEEC---
T ss_pred             EEEEEEEEECCCCceEECCCEEEEEECCC
Confidence            99999999976532  1135678887654

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=98.64  E-value=1.3e-07  Score=66.73  Aligned_cols=86  Identities=19%  Similarity=0.280  Sum_probs=54.3

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCC---CEEEEEeCCEE-----ee--ccCC--------ccEEEec-------CCcEEEEE
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPE---PRIEWYKDGSL-----VS--AEIG--------SHRILLP-------AGSLFFLS  192 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~---p~i~W~~~g~~-----l~--~~~~--------~~~~~~~-------~~~l~~~~  192 (238)
                      |..+++..|+++.|.|.+.+.+.   +.+.|+|....     +.  ....        ..+..+.       +.+|.   
T Consensus         7 p~~vtv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~---   83 (123)
T 4gjt_B            7 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVL---   83 (123)
T ss_dssp             CSEEECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEE---
T ss_pred             CCEEEEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEE---
Confidence            45677889999999999876654   35889985321     10  0000        0112111       12344   


Q ss_pred             eecCCCCCCCeEEEEEEEe-CCCceeEEEEEEEEccC
Q psy18191        193 LVHGKKDTDSGVYWCVARN-ELGFARSKNATLDVAGK  228 (238)
Q Consensus       193 vi~~v~~~d~G~Y~C~a~N-~~G~~~s~~~~L~V~~~  228 (238)
                       |.+++.+|+|.|.|.+.+ ..|... ..+.|.|.+.
T Consensus        84 -I~~v~~~DsG~Y~C~v~t~~~g~~~-~~~~L~VlE~  118 (123)
T 4gjt_B           84 -LRNAVQADEGEYECRVSTFPAGSFQ-ARLRLRVLEH  118 (123)
T ss_dssp             -EESCCSSSCSEEEEEEEESSSCEEE-EEEEEEC---
T ss_pred             -ECCCChHHCEEEEEEEEECCCCeEE-eEEEEEEEEC
Confidence             666799999999998876 567775 5889998664

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=98.63  E-value=1.3e-07  Score=75.05  Aligned_cols=138  Identities=12%  Similarity=0.223  Sum_probs=72.1

Q ss_pred             EEEcCCCCCCCCCceEEEeCCCcc-----cCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEe
Q psy18191         82 YLVGSQASPDYPNRFSLCNNKTWQ-----KGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKAD  156 (238)
Q Consensus        82 ~l~~~~~~~~~~g~y~~~~~~~~~-----~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~  156 (238)
                      .|.|.+++++|+|.|.|...+...     .+.+.-.+..  ...+. +......+|.+...+....+.+|+.+.|.|.+.
T Consensus       103 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~--~~~l~-V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~  179 (256)
T 3sob_H          103 YLQMNSLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQ--GTLVT-VSSASTKGPSVFPLAPSSKSTSGGTAALGCLVK  179 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECC--CEEEE-ECSSCCBCCEEEEECCC-----TTEEEEEEEEE
T ss_pred             EEEECCCCcccCEEEEEEEecCCCccccccccceeEECC--CEEEE-EecCCCCCCEEEEECCCcccccCCcEEEEEEEE
Confidence            477778888888888866543110     0000111111  11111 111234567776433344567899999999998


Q ss_pred             ee-C-CCEEEEEeCCEEeeccC-CccEEEecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191        157 GY-P-EPRIEWYKDGSLVSAEI-GSHRILLPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA  226 (238)
Q Consensus       157 g~-P-~p~i~W~~~g~~l~~~~-~~~~~~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~  226 (238)
                      +. | .+.+.|  ++..+.... ........++...+  ...|......| |.|+|.+.|..+... ....|.+.
T Consensus       180 ~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~-~~~~~~~~  250 (256)
T 3sob_H          180 DYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK-VDKKVEPK  250 (256)
T ss_dssp             EEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEE-EEEECCCC
T ss_pred             EEECCCeEEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcc-eEEEeccc
Confidence            74 4 356999  554443210 00111223343332  22245557788 999999999987764 35555544

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=98.62  E-value=1.4e-07  Score=64.84  Aligned_cols=74  Identities=16%  Similarity=0.216  Sum_probs=49.6

Q ss_pred             ceEEeCCCcEEEEEEEeeeCCC-----EEEEEeCCEE-e-e-cc----------CCccEEEe--cCCcEEEEEeecCCCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPEP-----RIEWYKDGSL-V-S-AE----------IGSHRILL--PAGSLFFLSLVHGKKD  199 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~p-----~i~W~~~g~~-l-~-~~----------~~~~~~~~--~~~~l~~~~vi~~v~~  199 (238)
                      .+.+.+|+++.|.|.+.+.|.+     .+.|++++.. + . ..          ....+...  .+..|.    |.+++.
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~----I~~v~~   78 (110)
T 1ncn_A            3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLR----LHNLQI   78 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEE----ECSCCG
T ss_pred             EEEEEeCCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEECCCEEEE----EcCCCh
Confidence            3677899999999998766544     4999997642 1 0 00          00112221  233444    677799


Q ss_pred             CCCeEEEEEEEeCCCcee
Q psy18191        200 TDSGVYWCVARNELGFAR  217 (238)
Q Consensus       200 ~d~G~Y~C~a~N~~G~~~  217 (238)
                      +|+|.|.|.+.|..|...
T Consensus        79 ~D~G~Y~C~v~~~~~~~~   96 (110)
T 1ncn_A           79 KDKGLYQCIIHHKKPTGM   96 (110)
T ss_dssp             GGCEEEEEEEEEECSSSE
T ss_pred             HHCEEEEEEEEcCCCCce
Confidence            999999999999887753

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.62  E-value=2.2e-07  Score=74.10  Aligned_cols=93  Identities=13%  Similarity=0.197  Sum_probs=57.0

Q ss_pred             CEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEE---eeccCC----------c-cEEEec--CCcEEEEEe
Q psy18191        132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSL---VSAEIG----------S-HRILLP--AGSLFFLSL  193 (238)
Q Consensus       132 P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~---l~~~~~----------~-~~~~~~--~~~l~~~~v  193 (238)
                      +.+...|..+.+.+|+++.|.|.+.+ +.+.+.|+|.  +..   +.....          . +.....  .+...+  .
T Consensus        28 ~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL--~  104 (270)
T 3qib_D           28 MKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSL--E  104 (270)
T ss_dssp             CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEE--E
T ss_pred             eeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEE--E
Confidence            34555667788999999999999865 7789999982  211   100000          0 111111  122222  3


Q ss_pred             ecCCCCCCCeEEEEEEEeCCCc---eeEEEEEEEEcc
Q psy18191        194 VHGKKDTDSGVYWCVARNELGF---ARSKNATLDVAG  227 (238)
Q Consensus       194 i~~v~~~d~G~Y~C~a~N~~G~---~~s~~~~L~V~~  227 (238)
                      |..++.+|+|.|.|.+.|..+.   .....+.|.|..
T Consensus       105 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  141 (270)
T 3qib_D          105 IQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLE  141 (270)
T ss_dssp             ESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEES
T ss_pred             ECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEcc
Confidence            7888999999999999974321   111345677765

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.61  E-value=1.9e-07  Score=75.09  Aligned_cols=97  Identities=15%  Similarity=0.254  Sum_probs=61.5

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC--EE---eec-c-----------CCccEEEecCCcEEEEEe
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG--SL---VSA-E-----------IGSHRILLPAGSLFFLSL  193 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g--~~---l~~-~-----------~~~~~~~~~~~~l~~~~v  193 (238)
                      .+.+...|..+.+.+|+++.|.|.+.+.|.+.+.|++++  ..   +.. .           ...+.....+..-...+.
T Consensus        24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (279)
T 2wbj_D           24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT  103 (279)
T ss_dssp             CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred             cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence            456677778899999999999999988888999999863  11   100 0           011222221111111223


Q ss_pred             ecCCCCCCCeEEEEEEEeCCCc-----eeEEEEEEEEcc
Q psy18191        194 VHGKKDTDSGVYWCVARNELGF-----ARSKNATLDVAG  227 (238)
Q Consensus       194 i~~v~~~d~G~Y~C~a~N~~G~-----~~s~~~~L~V~~  227 (238)
                      |..++.+|+|.|.|.+.|..|.     .....+.|.|..
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~  142 (279)
T 2wbj_D          104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTE  142 (279)
T ss_dssp             ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEES
T ss_pred             EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEec
Confidence            7888999999999999995320     111235677765

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=98.61  E-value=1.8e-07  Score=65.57  Aligned_cols=89  Identities=13%  Similarity=0.217  Sum_probs=54.4

Q ss_pred             ceEEeCCCcEEEEEEEeeeC---CCEEEEEeCC--E---Eeecc-------CCccEEEe-cCCcEEEEEeecCCCCCCCe
Q psy18191        140 SAVVPRHEPTTLNCKADGYP---EPRIEWYKDG--S---LVSAE-------IGSHRILL-PAGSLFFLSLVHGKKDTDSG  203 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P---~p~i~W~~~g--~---~l~~~-------~~~~~~~~-~~~~l~~~~vi~~v~~~d~G  203 (238)
                      .+.+.+|++++|.|...+.+   .+.+.|++..  .   .+...       ...+.... .++..  .+.|..++.+|+|
T Consensus         9 ~~~~~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~--~L~I~~~~~~DsG   86 (120)
T 1oaq_L            9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKA--ALTITGAQTEDEA   86 (120)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEE--EEEEESCCGGGCE
T ss_pred             cEEEcCCCCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEecCCCeE--EEEECCCChhhCe
Confidence            47889999999999997765   5779999842  1   12110       01111111 22222  2237888999999


Q ss_pred             EEEEEEEeCCCceeEEEEEEEEccCCC
Q psy18191        204 VYWCVARNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       204 ~Y~C~a~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      .|.|.+.+..+.....-..|.|.+.+.
T Consensus        87 ~Y~C~~~~~~~~~fg~gt~L~V~~~~~  113 (120)
T 1oaq_L           87 IYFCALWYSNHLVFGGGTKLTVLGQPK  113 (120)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECC---
T ss_pred             EEEEEEccCCCcEECCCEEEEEcCCCC
Confidence            999999986432222245788877654

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=98.61  E-value=4.2e-07  Score=65.20  Aligned_cols=98  Identities=16%  Similarity=0.182  Sum_probs=59.3

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC---CEEeec--cCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD---GSLVSA--EIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~---g~~l~~--~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      +...|..+.+.+|++++|.|.+.+. .+.+.|++.   |..+..  ...++.....++.. ..+.|..++.+|+|.|.|.
T Consensus        21 v~Q~p~~~~v~~G~svtL~C~~s~~-~~~v~Wyrq~~~g~~~~~l~~~~~rf~~~~~~~~-~~L~I~~~~~~Dsg~Y~C~   98 (134)
T 3kg5_A           21 IWQSPRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQLKLEKGRMEESQNESL-ATLTIQGIRFEDNGIYFCQ   98 (134)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCCT-TCCCEEEEESSSSSCCEECCCCTTTEEEEECSSE-EEEEECSCCTTTCEEEEEE
T ss_pred             EEEeCCEEEEeCCCCEEEEEEECCC-CceEEEEEECCCCCCcEEEEEECCeEEEEccCCE-EEEEECCCCcCcCEEEEEE
Confidence            4455667889999999999998765 578999987   332211  11122222222222 2233788899999999999


Q ss_pred             EEeCCC-c-eeEEEEEEEEccCCCCCC
Q psy18191        209 ARNELG-F-ARSKNATLDVAGKISTAT  233 (238)
Q Consensus       209 a~N~~G-~-~~s~~~~L~V~~~~~~~~  233 (238)
                      +.+..+ . ....-..|.|.+.+++.+
T Consensus        99 ~~~~~~~~~~fg~GT~L~V~~~p~~~~  125 (134)
T 3kg5_A           99 QKCNNTSEVYQGCGTELRVMGFSTLAQ  125 (134)
T ss_dssp             EECTTTCCEEECCCEEEEEECC-----
T ss_pred             EEcCCCCceEECCCEEEEEecCCCHHH
Confidence            998632 1 111245788887766543

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.60  E-value=2.5e-07  Score=71.91  Aligned_cols=88  Identities=11%  Similarity=0.277  Sum_probs=56.6

Q ss_pred             CCceEEeCCCcEEEEEEEeeeC--CCEEEEEeCC--EEee---c------------cCCccEEEec---CCcEEEEEeec
Q psy18191        138 PASAVVPRHEPTTLNCKADGYP--EPRIEWYKDG--SLVS---A------------EIGSHRILLP---AGSLFFLSLVH  195 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~g--~~l~---~------------~~~~~~~~~~---~~~l~~~~vi~  195 (238)
                      |..+.+.+|+++.|.|.+.+.|  .+.+.|+++.  ..+.   .            ....+.....   .+...  +.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s--L~I~   84 (225)
T 1op3_H            7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVY--LQMH   84 (225)
T ss_dssp             ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEE--EEEC
T ss_pred             CCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEE--EEEC
Confidence            4467889999999999998876  6889999852  2111   0            0011222111   12222  2378


Q ss_pred             CCCCCCCeEEEEEEEeCCC-----c--eeEEEEEEEEcc
Q psy18191        196 GKKDTDSGVYWCVARNELG-----F--ARSKNATLDVAG  227 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~N~~G-----~--~~s~~~~L~V~~  227 (238)
                      .++.+|+|.|.|.+.|..|     .  .....+.|.|..
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~  123 (225)
T 1op3_H           85 KMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSP  123 (225)
T ss_dssp             SCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEES
T ss_pred             CCChhhCEEEEEEEecCCCccccccceeecCCEEEeccc
Confidence            8899999999999999875     2  111245777765

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.60  E-value=1.3e-07  Score=72.47  Aligned_cols=86  Identities=13%  Similarity=0.300  Sum_probs=54.4

Q ss_pred             CCceEEeCCCcEEEEEEEeeeC--CCEEEEEeC--CEEee---c-----------cCCccEEEec---CCcEEEEEeecC
Q psy18191        138 PASAVVPRHEPTTLNCKADGYP--EPRIEWYKD--GSLVS---A-----------EIGSHRILLP---AGSLFFLSLVHG  196 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~--g~~l~---~-----------~~~~~~~~~~---~~~l~~~~vi~~  196 (238)
                      |..+.+.+|+++.|.|.+.|.|  .+.+.|+|+  +..+.   .           ....+.....   .+..  .+.|..
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--~L~I~~   84 (210)
T 3d9a_H            7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQY--YLDLNS   84 (210)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEE--EEEECS
T ss_pred             CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEE--EEEECC
Confidence            4567889999999999999875  489999985  32211   0           0011222111   1211  223788


Q ss_pred             CCCCCCeEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191        197 KKDTDSGVYWCVARNELGFARSKNATLDVAG  227 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~  227 (238)
                      ++.+|+|.|.|.|.|.....  ..+.|.|..
T Consensus        85 v~~~D~G~Y~C~~~~~~~~~--~~~~l~V~~  113 (210)
T 3d9a_H           85 VTTEDTATYYCANWDGDYWG--QGTLVTVSA  113 (210)
T ss_dssp             CCGGGCEEEEEEETTSSCBC--CCEEEEECC
T ss_pred             CCcccCEEEEEEEecCcccc--cceEEEecc
Confidence            89999999999999964211  235666653

>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, extra celluar domain, domain swappin nysgrc, structural genomics; 1.90A {Mus musculus}

Probab=98.60  E-value=1.1e-06  Score=61.54  Aligned_cols=90  Identities=19%  Similarity=0.176  Sum_probs=59.5

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCC----CEEEEEeCCEEeeccCCccEEEe-cCCcEEEEEeecCCCCCCCe
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPE----PRIEWYKDGSLVSAEIGSHRILL-PAGSLFFLSLVHGKKDTDSG  203 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~----p~i~W~~~g~~l~~~~~~~~~~~-~~~~l~~~~vi~~v~~~d~G  203 (238)
                      ..+|.+...|. ..+..|+.++|.| .. .+.    -.+.|+|+|..+..     .... ....-.+  .|..++.+|+|
T Consensus         7 lpkPsL~a~P~-~vV~~G~~VTL~C-~~-~~~~~~~~~f~L~k~g~~~~~-----~~~~~~~~~a~f--~i~~vt~~daG   76 (118)
T 4ety_A            7 LPDITIFPNSS-LMISQGTFVTVVC-SY-SDKHDLYNMVRLEKDGSTFME-----KSTEPYKTEDEF--EIGPVNETITG   76 (118)
T ss_dssp             CCEEEEECCSE-EEEETTCCEEEEE-EC-TTTGGGCCEEEEEETTEEEEE-----EECCSSSSEEEE--EECSCCGGGCE
T ss_pred             CCCCEEEEeCC-CcccCCCcEEEEE-CC-CCCCcccCEEEEEECCcCccc-----cccCCCCcceEE--EeCccCccCCe
Confidence            35677766554 5678999999999 63 233    57999999976531     1111 1111222  26777999999


Q ss_pred             EEEEEEEeCCC-ceeEEEEEEEEccC
Q psy18191        204 VYWCVARNELG-FARSKNATLDVAGK  228 (238)
Q Consensus       204 ~Y~C~a~N~~G-~~~s~~~~L~V~~~  228 (238)
                      .|.|...+..+ +..|+.+.|.|.+.
T Consensus        77 ~Y~C~y~~~~~wS~~Sdpl~L~Vtg~  102 (118)
T 4ety_A           77 HYSCIYSKGITWSERSKTLELKVIKE  102 (118)
T ss_dssp             EEEEEEEC----CEECCCEEEEEECC
T ss_pred             EEEEEeeCCCccccccCCEEEEEEEe
Confidence            99999998776 34467889999876

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.59  E-value=1.1e-08  Score=79.10  Aligned_cols=87  Identities=23%  Similarity=0.326  Sum_probs=57.2

Q ss_pred             CceEEeCCCcEEEEEEEeeeCC-----CEEEEEeCCEEee-----------ccCCccEEEec------CCcEEEEEeecC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPE-----PRIEWYKDGSLVS-----------AEIGSHRILLP------AGSLFFLSLVHG  196 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~-----p~i~W~~~g~~l~-----------~~~~~~~~~~~------~~~l~~~~vi~~  196 (238)
                      ..+.+.+|+++.|.|.+.+.|.     +.+.|++++....           .....+.....      +..|.    |..
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~----I~~   78 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLR----LQR   78 (222)
T ss_dssp             CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEE----ECS
T ss_pred             CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEE----ECC
Confidence            3466789999999999988764     7899999764321           00011111111      33454    667


Q ss_pred             CCCCCCeEEEEEEEeCCCceeEEEEEEEEccCCCC
Q psy18191        197 KKDTDSGVYWCVARNELGFARSKNATLDVAGKIST  231 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~  231 (238)
                      ++.+|+|.|+|.+.|.. ... ..+.|.|..++..
T Consensus        79 v~~~D~G~Y~C~~~~~~-~~~-~~~~l~V~~~~~~  111 (222)
T 4i0k_A           79 VRVTDEGSYTCFVSIQD-FDS-AAVSLQVAAPYSK  111 (222)
T ss_dssp             CCGGGCSCEEEEEEECC-CCC-CCCCCCCCBCCCC
T ss_pred             cccccCEEEEEEEEeCC-Cce-EEEEEEEEcCCCC
Confidence            79999999999999863 332 4667777665443

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.59  E-value=1.5e-07  Score=72.40  Aligned_cols=64  Identities=16%  Similarity=0.264  Sum_probs=43.7

Q ss_pred             EEEEEEEeee-CC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        149 TTLNCKADGY-PE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       149 ~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      +.|.|.+.|. |. |.+.|+++ ..+... ........++.+.+...   ....|.|.|+|.+.|..+...
T Consensus       135 ~~l~C~~~g~~P~~~~v~W~~~-~~l~~~-~~~~~~~~~g~y~~~~~---~~~~~~~~ytC~v~~~~~~~~  200 (207)
T 1ypz_E          135 TNVACLVKDFYPKEVTISLRSS-KKIVEF-DPAIVISPSGKYSAVKL---GQYGDSNSVTCSVQHNSETVH  200 (207)
T ss_dssp             TEEEEEEEEESSSCCEEEEECS-SEEEEC-CCEEEECTTSSEEEEEC---EEESSTTTCEEEEEETTEEEE
T ss_pred             CeEEEEEeeEeCCCeEEEEecC-CcccCC-ccceEEcCCCcEEEEEe---ecccCCCcEEEEEEECCccEe
Confidence            6899999876 44 79999999 666532 12222244566665433   233678999999999887653

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.58  E-value=2.2e-07  Score=71.81  Aligned_cols=87  Identities=13%  Similarity=0.313  Sum_probs=55.3

Q ss_pred             CCceEEeCCCcEEEEEEEeeeC--CCEEEEEeCC--EE---eec---c-----------CCccEEEec---CCcEEEEEe
Q psy18191        138 PASAVVPRHEPTTLNCKADGYP--EPRIEWYKDG--SL---VSA---E-----------IGSHRILLP---AGSLFFLSL  193 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~g--~~---l~~---~-----------~~~~~~~~~---~~~l~~~~v  193 (238)
                      |..+.+.+|+++.|.|.+.+.|  .+.+.|+++.  ..   +..   .           ...+.....   .+..  .+.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~--~L~   84 (222)
T 1q9r_B            7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSIL--YLQ   84 (222)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEE--EEE
T ss_pred             CCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeE--EEE
Confidence            4457889999999999998865  6889999842  21   100   0           011121111   1222  223


Q ss_pred             ecCCCCCCCeEEEEEEEeCCC-----ceeEEEEEEEEcc
Q psy18191        194 VHGKKDTDSGVYWCVARNELG-----FARSKNATLDVAG  227 (238)
Q Consensus       194 i~~v~~~d~G~Y~C~a~N~~G-----~~~s~~~~L~V~~  227 (238)
                      |..++.+|+|.|.|.+.|..|     ... ..+.|.|..
T Consensus        85 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~-~~~~l~V~~  122 (222)
T 1q9r_B           85 MNTLRAEDSATYYCARDHDGYYERFSYWG-QGTLVTVSA  122 (222)
T ss_dssp             ECSCCGGGCEEEEEEECCCSSCCSCCCBC-CCEEEEECS
T ss_pred             ECcCCcccCeEEEEEEeccCCcccceEeC-CceEEEecc
Confidence            788899999999999999765     221 245677764

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.58  E-value=8.4e-07  Score=69.71  Aligned_cols=96  Identities=13%  Similarity=0.254  Sum_probs=59.1

Q ss_pred             EEEeCCCceEEeCCCcEEEEEEEeee--CCCEEEEEeCC--E---Eeec-c-----------CCccEEEe-cCCcEEEEE
Q psy18191        133 RITEHPASAVVPRHEPTTLNCKADGY--PEPRIEWYKDG--S---LVSA-E-----------IGSHRILL-PAGSLFFLS  192 (238)
Q Consensus       133 ~i~~~~~~~~~~~G~~~~L~C~~~g~--P~p~i~W~~~g--~---~l~~-~-----------~~~~~~~~-~~~~l~~~~  192 (238)
                      .+...|..+.+.+|+++.|.|.+.+.  +.+.+.|+|+.  .   .+.. .           ...+.... ..+.-...+
T Consensus         3 ~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   82 (242)
T 1hxm_B            3 HLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTL   82 (242)
T ss_dssp             EEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred             ccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEE
Confidence            45555677889999999999999875  67889999842  2   1110 0           01111111 111011122


Q ss_pred             eecCCCCCCCeEEEEEEEeCCC-c-----eeEEEEEEEEccC
Q psy18191        193 LVHGKKDTDSGVYWCVARNELG-F-----ARSKNATLDVAGK  228 (238)
Q Consensus       193 vi~~v~~~d~G~Y~C~a~N~~G-~-----~~s~~~~L~V~~~  228 (238)
                      .|..++.+|+|.|.|.+.|..+ .     .....+.|.|...
T Consensus        83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~  124 (242)
T 1hxm_B           83 TIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDK  124 (242)
T ss_dssp             EECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESS
T ss_pred             EECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEccc
Confidence            3788899999999999998631 1     1112457888763

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.58  E-value=5.4e-08  Score=74.79  Aligned_cols=56  Identities=21%  Similarity=0.400  Sum_probs=44.8

Q ss_pred             eCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        144 PRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       144 ~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      .+|+++.|.|.+   |.|.+.|+|+|..+...      ...++.|.+..+    +.+|+|.|+|.|.|.
T Consensus        16 ~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~------~~~~~~L~i~~v----~~~DsG~Y~C~~~~~   71 (204)
T 1sy6_A           16 QEDGSVLLTCDA---EAKNITWFKDGKMIGFL------TEDKKKWNLGSN----AKDPRGMYQCKGSQN   71 (204)
T ss_dssp             CSSSEEEEEECS---CSSEEEEEETTEEEEEE------ESSCCCEEEEEG----GGCCEEEEEEESSSS
T ss_pred             cCCCeEEEEEcC---CCCEEEEEECCEECCCC------CCCCCeEEeCCC----CcCCCEEEEEEecCC
Confidence            579999999998   88999999999888632      123566776555    999999999997653

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=98.58  E-value=3.2e-07  Score=63.64  Aligned_cols=90  Identities=19%  Similarity=0.209  Sum_probs=56.3

Q ss_pred             CCceEEeCCCcEEEEEEEeee--CCCEEEEEeCC-------EEeeccCC-------ccEEEec----CCcEEEEEeecCC
Q psy18191        138 PASAVVPRHEPTTLNCKADGY--PEPRIEWYKDG-------SLVSAEIG-------SHRILLP----AGSLFFLSLVHGK  197 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~--P~p~i~W~~~g-------~~l~~~~~-------~~~~~~~----~~~l~~~~vi~~v  197 (238)
                      |..+.+.+|++++|.|.....  ....+.|++..       ..+.....       ..++.+.    .+...+  .|.++
T Consensus         4 p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~sL--~I~~v   81 (115)
T 2or7_A            4 HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSL--TIENT   81 (115)
T ss_dssp             --CEEEETTSCEEECCBCCHHHHCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSCGGGTBCCE--EESSC
T ss_pred             ccEEEEEcCCCEEEEEEeecCCCCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecCccCCeEEE--EEccC
Confidence            567888999999999997643  34679999974       22211101       1112111    122222  27788


Q ss_pred             CCCCCeEEEEEEEeCCCceeEEEEEEEEccCCC
Q psy18191        198 KDTDSGVYWCVARNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      +.+|+|.|.|.+.+...... ..+.|.|.+.+.
T Consensus        82 ~~~DsG~Y~C~v~~~~~~~~-~~v~L~V~~~~~  113 (115)
T 2or7_A           82 VVGDGGPYCCVVEIPGAFHF-VDYMLEVKPELV  113 (115)
T ss_dssp             CGGGCEEEEEEECCTTSCEE-EEEEEEEESCC-
T ss_pred             CHHHCEEEEEEEECCCceeE-EEEEEEEcCCCC
Confidence            99999999999987655443 588888866543

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.57  E-value=1.3e-07  Score=76.85  Aligned_cols=82  Identities=13%  Similarity=0.107  Sum_probs=49.8

Q ss_pred             eEEeCCCcEEEEEEEeeeCC-C--EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCC-CeEEEEEEEeCCCc-
Q psy18191        141 AVVPRHEPTTLNCKADGYPE-P--RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTD-SGVYWCVARNELGF-  215 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~~g~P~-p--~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d-~G~Y~C~a~N~~G~-  215 (238)
                      ..+.+|+.++|.|.+.|.++ +  .|+|+|++..+....    .........+  .+. +..+| .+.|+|.|.|.++. 
T Consensus        96 ~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~----~~~~~~~~~l--~~~-~~~~D~g~~~~C~A~~~l~~~  168 (291)
T 1mq8_A           96 SWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREP----AVGEPAEVTT--TVL-VRRDHHGANFSCRTELDLRPQ  168 (291)
T ss_dssp             SBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEE----CCBTTEEEEE--ECC-CSSSCSSCEEEEEEEEECGGG
T ss_pred             ccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeeccc----CCCCCceEEE--Eee-eeeccCCceEEEEEEecCCcc
Confidence            44788999999999977544 3  589999998876421    0011111111  122 34555 45999999998763 


Q ss_pred             ------eeEEEEEEEEccCC
Q psy18191        216 ------ARSKNATLDVAGKI  229 (238)
Q Consensus       216 ------~~s~~~~L~V~~~~  229 (238)
                            ..+....|.|..+|
T Consensus       169 g~~l~~~~s~~~~L~V~~~P  188 (291)
T 1mq8_A          169 GLELFENTSAPYQLQTFVLP  188 (291)
T ss_dssp             TSCEEEECCCCEECBC----
T ss_pred             CCccccccccceEEEEEecC
Confidence                  12346778887664

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=98.57  E-value=4e-08  Score=88.22  Aligned_cols=87  Identities=18%  Similarity=0.306  Sum_probs=62.4

Q ss_pred             CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCc---
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGF---  215 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~---  215 (238)
                      ..+.+.+|+++.|.|.+.| |.|.+.|++++..+... ...++...++.|.    |..++..|+|.|.|.|.|..+.   
T Consensus       541 ~~v~v~~g~~~~L~C~~~s-p~a~v~W~~~~~~l~~~-~~~~~~~~~~~Ll----I~~v~~~DsG~Y~C~A~e~~~~~~~  614 (663)
T 1olz_A          541 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAE-SPKYGLMGRKNLL----IFNLSEGDSGVYQCLSEERVKNKTV  614 (663)
T ss_dssp             EEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCC-SSSBCCTTTTCEE----ECSCCGGGCEEEEEEEEEECSSSEE
T ss_pred             eEEEEecCCcEEEEccCCC-CCCcEEEEECCeecccc-CcceEEecCCeEE----EEecCcccCeEEEEEEEECccCCCc
Confidence            3567889999999999999 99999999999877643 2233334466776    4555999999999999998522   


Q ss_pred             --eeEEEEEEEEccCCCCC
Q psy18191        216 --ARSKNATLDVAGKISTA  232 (238)
Q Consensus       216 --~~s~~~~L~V~~~~~~~  232 (238)
                        .. ..+.|.|..+|...
T Consensus       615 ~~~~-~~~~l~V~v~P~~~  632 (663)
T 1olz_A          615 FQVV-AKHVLEVKVVPKPV  632 (663)
T ss_dssp             EEEE-EEEEEEEEC-----
T ss_pred             eEEE-EEEEEEEEeCCccC
Confidence              32 47778887765443

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=97.99  E-value=6.5e-09  Score=71.93  Aligned_cols=76  Identities=20%  Similarity=0.270  Sum_probs=49.0

Q ss_pred             CCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCE--Eee---c------cCCccEEEecC--CcEEEEEeecCCCCCCCe
Q psy18191        137 HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGS--LVS---A------EIGSHRILLPA--GSLFFLSLVHGKKDTDSG  203 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~--~l~---~------~~~~~~~~~~~--~~l~~~~vi~~v~~~d~G  203 (238)
                      .|..+.+.+|++++|.|.+.+.+.+.+.|++...  .+.   .      .....++....  ......+.|..++.+|+|
T Consensus         5 ~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG   84 (110)
T 1u3h_A            5 SPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSA   84 (110)
Confidence            4567788999999999999888888999998632  111   0      00111222211  111111226666999999


Q ss_pred             EEEEEEEeC
Q psy18191        204 VYWCVARNE  212 (238)
Q Consensus       204 ~Y~C~a~N~  212 (238)
                      .|.|.+.|.
T Consensus        85 ~Y~C~~~~~   93 (110)
T 1u3h_A           85 TYFCAASAN   93 (110)
Confidence            999999985

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=98.57  E-value=8.1e-07  Score=62.71  Aligned_cols=97  Identities=13%  Similarity=0.158  Sum_probs=58.4

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCC-CEEEEEeCCE-----EeeccCC-------ccEEEe---cCCcEEEEEeecCCCCCC
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPE-PRIEWYKDGS-----LVSAEIG-------SHRILL---PAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~-p~i~W~~~g~-----~l~~~~~-------~~~~~~---~~~~l~~~~vi~~v~~~d  201 (238)
                      |..+.+.+|++++|.|...+... ..+.|++...     .+.....       ++....   ..+...  +.|..++.+|
T Consensus         9 p~~v~~~~G~svtL~C~~s~~~~~~~~~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~s--L~I~~l~~~D   86 (124)
T 2nms_A            9 PTTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFT--VTMEDLMKTD   86 (124)
T ss_dssp             CSEEEEETTCCEEEEEEECTTCTTSEEEEEESSSSTTCEEEEECCSSSCCEEETTEEEEEETTTTEEE--EEECSCCGGG
T ss_pred             ccEEEEeCCCCEEEEeEEeCCcccccEEEEeCCCCCCceEEEEcCCcccceeCCCEEEEEcCcCCEEE--EEEeCCCHHH
Confidence            45678899999999999865432 4699998532     1211100       111111   122233  2378889999


Q ss_pred             CeEEEEEEEeCCCceeEEEEEEEEccCCCCCCCCCC
Q psy18191        202 SGVYWCVARNELGFARSKNATLDVAGKISTATDCSF  237 (238)
Q Consensus       202 ~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~~~~~~~  237 (238)
                      +|.|.|...+..... ...+.|.|...+.++.+.++
T Consensus        87 sg~Y~C~~~~~~~~~-~~~v~L~V~~~~~~~~~~~~  121 (124)
T 2nms_A           87 ADTYWCGIEKTGNDL-GVTVQVTIDPAPVTQEETSS  121 (124)
T ss_dssp             CEEEEEEEEETTEEE-EEEEEEEEECCC--------
T ss_pred             CEEEEEEEEcCCCCc-cEEEEEEEeCCCcCCCCccc
Confidence            999999998764333 35789999999888877654

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.57  E-value=6.3e-07  Score=69.37  Aligned_cols=91  Identities=13%  Similarity=0.347  Sum_probs=57.2

Q ss_pred             CCceEEeCCCcEEEEEEEeeeC--CCEEEEEeCC--E---Eeecc------------CCccEEEecC-CcEEEEEeecCC
Q psy18191        138 PASAVVPRHEPTTLNCKADGYP--EPRIEWYKDG--S---LVSAE------------IGSHRILLPA-GSLFFLSLVHGK  197 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~g--~---~l~~~------------~~~~~~~~~~-~~l~~~~vi~~v  197 (238)
                      |..+.+.+|+++.|.|.+.+.|  .+.+.|+++.  .   .+...            ...+.....+ ..-...+.|..+
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (220)
T 2fbj_H            7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence            3468889999999999998876  6789999842  1   11110            0112222211 111112237888


Q ss_pred             CCCCCeEEEEEEEeCCCce--eEEEEEEEEccC
Q psy18191        198 KDTDSGVYWCVARNELGFA--RSKNATLDVAGK  228 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N~~G~~--~s~~~~L~V~~~  228 (238)
                      +.+|+|.|.|.+.|..+..  ....+.|.|...
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~  119 (220)
T 2fbj_H           87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSAE  119 (220)
T ss_dssp             CGGGCEEEEEEEEETTTEEEEECCCEEEEECSS
T ss_pred             ChhhCEEEEEEEeccccccceecCCEEEEecCC
Confidence            9999999999999986531  112457888753

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}

Probab=98.56  E-value=6.9e-07  Score=78.95  Aligned_cols=87  Identities=18%  Similarity=0.340  Sum_probs=54.6

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCC---CC
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDT---DS  202 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~---d~  202 (238)
                      ...+|.+...+.......|+.+.|.|.+.|. |. ..|+|+++|..+............++++.+...+.. ...   +.
T Consensus       446 ~~~~P~V~~~~~~~~~~~~~~~~L~C~v~gfyP~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~l~v-~~~~~~~~  524 (551)
T 1ntl_A          446 RPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNGSYFVYSKLNV-QKSNWEAG  524 (551)
T ss_pred             CCcCCceEEeCCChhhccCCceEEEEEEEEeECCCCEEEEEECCEEccCceeccceeCCCCCEEEEEEEEE-cHHHcCCC
Confidence            3467776554333334578999999999985 43 479999999987521111222234566665332221 333   47


Q ss_pred             eEEEEEEEeCCCc
Q psy18191        203 GVYWCVARNELGF  215 (238)
Q Consensus       203 G~Y~C~a~N~~G~  215 (238)
                      +.|+|.+.+..-.
T Consensus       525 ~~ytC~V~h~~l~  537 (551)
T 1ntl_A          525 NTFTCSVLHEGLH  537 (551)
T ss_pred             CeEEEEEEECCCC
Confidence            8999999987643

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=98.56  E-value=5.8e-08  Score=76.03  Aligned_cols=86  Identities=10%  Similarity=0.044  Sum_probs=58.2

Q ss_pred             cCCEEE-eCCCceEEeCCCcEEEEEEEeee-CC-C-EEEEEeCCEEe-eccCCccEEEecCCcEE--EEEeecCCCCCCC
Q psy18191        130 RVPRIT-EHPASAVVPRHEPTTLNCKADGY-PE-P-RIEWYKDGSLV-SAEIGSHRILLPAGSLF--FLSLVHGKKDTDS  202 (238)
Q Consensus       130 ~~P~i~-~~~~~~~~~~G~~~~L~C~~~g~-P~-p-~i~W~~~g~~l-~~~~~~~~~~~~~~~l~--~~~vi~~v~~~d~  202 (238)
                      .+|.+. ..|....+.+|+.+.|.|.+.|. |. | .+.|+++|..+ ... ........+|...  ..+.|..+..+|.
T Consensus        11 ~~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~-~~~~~~~~~g~~~~~s~L~I~~~~~~D~   89 (231)
T 2w59_A           11 SPIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPD-PMVLQEHFNGTYSASSAVPVSTQDWLSG   89 (231)
T ss_dssp             -CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCC-CCEEEECTTSCEEEEEEEECCHHHHHTT
T ss_pred             CCCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccc-cccceECCCCcEEEEEEEEecchhccCC
Confidence            466654 45666777899999999999986 64 5 99999999877 321 1111122334322  1223566678899


Q ss_pred             eEEEEEEEeCCCce
Q psy18191        203 GVYWCVARNELGFA  216 (238)
Q Consensus       203 G~Y~C~a~N~~G~~  216 (238)
                      |.|+|.|.|..+..
T Consensus        90 g~Y~C~~~~~~~~~  103 (231)
T 2w59_A           90 ERFTCTVQHEELPL  103 (231)
T ss_dssp             CCEEEEEECTTCSS
T ss_pred             CEEEEEEEcCCCCC
Confidence            99999999988654

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.56  E-value=3.8e-07  Score=72.62  Aligned_cols=93  Identities=15%  Similarity=0.244  Sum_probs=57.9

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEe--CCEEe------------eccC-C-ccEEEec--CCcEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK--DGSLV------------SAEI-G-SHRILLP--AGSLFFLS  192 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~--~g~~l------------~~~~-~-~~~~~~~--~~~l~~~~  192 (238)
                      .+.+...|..+.+.+|+++.|.|.+. .+.+.+.|+|  .+..+            .... . ++.....  .+...+  
T Consensus        26 ~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL--  102 (268)
T 3pl6_D           26 GAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTL--  102 (268)
T ss_dssp             -SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEE--
T ss_pred             CceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEE--
Confidence            34455566778899999999999986 5788999998  22111            1000 0 1222221  112222  


Q ss_pred             eecCCCCCCCeEEEEEEEeC--CCceeEEEEEEEEcc
Q psy18191        193 LVHGKKDTDSGVYWCVARNE--LGFARSKNATLDVAG  227 (238)
Q Consensus       193 vi~~v~~~d~G~Y~C~a~N~--~G~~~s~~~~L~V~~  227 (238)
                      .|..++.+|+|.|.|.+.|.  .+... ....|.|..
T Consensus       103 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~-~~~~l~V~~  138 (268)
T 3pl6_D          103 KIQRTERGDSAVYLCATSALGDTQYFG-PGTRLTVLE  138 (268)
T ss_dssp             EECSCCGGGCEEEEEEEESSSSSCEEC-CCEEEEEES
T ss_pred             EECCCCcccCEEEEEEEecCCCceeeC-CcEEEEEec
Confidence            37788999999999999984  33332 355677765

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=98.55  E-value=6.4e-07  Score=75.48  Aligned_cols=108  Identities=22%  Similarity=0.296  Sum_probs=61.0

Q ss_pred             cCCceEEeCCCCcceecceecCCccCCEEEeCCCceE-EeCCC-cEEEEEEEeee-CC--CEEEEE-eCC---EEeeccC
Q psy18191        106 KGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAV-VPRHE-PTTLNCKADGY-PE--PRIEWY-KDG---SLVSAEI  176 (238)
Q Consensus       106 ~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~-~~~G~-~~~L~C~~~g~-P~--p~i~W~-~~g---~~l~~~~  176 (238)
                      .|.|.|.+..........+.+.+..+|.+...+.... +..|+ .+.|.|.+.|. |.  +.++|+ +++   ..+....
T Consensus       266 ~G~Y~C~v~~~~~~~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP~~~~~VtW~~rdg~~g~~~~~~~  345 (401)
T 3f8u_B          266 EGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEG  345 (401)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEBSSTTCEEEEEEESSSSCSCEECCS
T ss_pred             CceEEEEEEecccceeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCcCCCCcEEEEEecCCCCCceecccc
Confidence            5555554443322222233344567888876655544 45676 89999999886 55  689995 775   2222110


Q ss_pred             ---CccEEEecCCcEEEEEeecCCC--CCCC-eEEEEEEEeCC
Q psy18191        177 ---GSHRILLPAGSLFFLSLVHGKK--DTDS-GVYWCVARNEL  213 (238)
Q Consensus       177 ---~~~~~~~~~~~l~~~~vi~~v~--~~d~-G~Y~C~a~N~~  213 (238)
                         ........+|...+...+....  .++. +.|+|.+.|..
T Consensus       346 ~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~s  388 (401)
T 3f8u_B          346 QRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS  388 (401)
T ss_dssp             EEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTT
T ss_pred             cccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCC
Confidence               0111223456666554432222  1244 59999999987

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=98.55  E-value=3.1e-08  Score=78.14  Aligned_cols=86  Identities=12%  Similarity=0.083  Sum_probs=54.4

Q ss_pred             CCEE-EeCCCceE-EeCCCcEEEEEEEeee---CCC-EEEEEeCCEEeeccCCccEEEecCCcEE--EEEeecCCCCCCC
Q psy18191        131 VPRI-TEHPASAV-VPRHEPTTLNCKADGY---PEP-RIEWYKDGSLVSAEIGSHRILLPAGSLF--FLSLVHGKKDTDS  202 (238)
Q Consensus       131 ~P~i-~~~~~~~~-~~~G~~~~L~C~~~g~---P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~--~~~vi~~v~~~d~  202 (238)
                      +|.+ ...+.... +.+|+++.|.|.+.|.   |.| .+.|++++..+............++...  ..+.|..+..+|.
T Consensus        15 ~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~   94 (239)
T 1i1c_A           15 VSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNG   94 (239)
T ss_dssp             --CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTT
T ss_pred             CCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCC
Confidence            3444 34343333 6799999999999887   777 8999999866542100001111222211  1223566688899


Q ss_pred             eEEEEEEEeCCCce
Q psy18191        203 GVYWCVARNELGFA  216 (238)
Q Consensus       203 G~Y~C~a~N~~G~~  216 (238)
                      |.|.|.|.|..|..
T Consensus        95 g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           95 KTFKCKVNSGAFPA  108 (239)
T ss_dssp             CCEEEEEECSSSSS
T ss_pred             CeEEEEEecccCCC
Confidence            99999999998864

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=98.54  E-value=9.8e-08  Score=74.40  Aligned_cols=131  Identities=11%  Similarity=0.205  Sum_probs=69.6

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCCccc-C--CceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEee
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKTWQK-G--LPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADG  157 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~~~~-G--~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g  157 (238)
                      ..|.|.++.++|+|.|.|...+.... .  .+.-.+.  ....+. +......+|.+...+....+..|+.+.|.|.+.+
T Consensus        79 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~--~~t~l~-V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~  155 (226)
T 3mlr_H           79 AYLQWTTLQASDTGKYFCTRLYLFEGAQSSNAFDLWG--QGTMIL-VSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKD  155 (226)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEEEEESSSEEEEEEEEC--CCEEEE-ECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEE
T ss_pred             EEEEECCCCcccCEEEEEeEccCCCcccccchhhhhC--CccEEe-eccCCCCCCcEEEecCcccccCCCCEEEEEEEEE
Confidence            45778888888888888665431000 0  0000110  111111 1112345677764333333468999999999987


Q ss_pred             e-C-CCEEEEEeCCEEeeccC-CccEEEecCCcEEE--EEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        158 Y-P-EPRIEWYKDGSLVSAEI-GSHRILLPAGSLFF--LSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       158 ~-P-~p~i~W~~~g~~l~~~~-~~~~~~~~~~~l~~--~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      . | .+.+.|  ++..+.... ........++...+  ...|......| |.|+|.+.|..+...
T Consensus       156 ~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~  217 (226)
T 3mlr_H          156 YFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  217 (226)
T ss_dssp             EBSSCCEEEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEE
T ss_pred             EECCCeEEEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcC
Confidence            5 4 357999  443332110 00111223343332  22245556778 999999999887753

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=98.53  E-value=2.5e-07  Score=64.70  Aligned_cols=77  Identities=25%  Similarity=0.417  Sum_probs=51.0

Q ss_pred             EEEeCCCceEEeCCCcEEEEEEEeee-CCCEEEEEeCCE----EeeccCC------ccEEE---ecC--CcEEEEEeecC
Q psy18191        133 RITEHPASAVVPRHEPTTLNCKADGY-PEPRIEWYKDGS----LVSAEIG------SHRIL---LPA--GSLFFLSLVHG  196 (238)
Q Consensus       133 ~i~~~~~~~~~~~G~~~~L~C~~~g~-P~p~i~W~~~g~----~l~~~~~------~~~~~---~~~--~~l~~~~vi~~  196 (238)
                      .+...|..+.+.+|++++|.|.+.+. |.+.+.|++++.    .+.....      .....   ...  ..|.    |..
T Consensus         9 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~----I~~   84 (120)
T 2yz1_A            9 KVTQPEKSVSVAAGDSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIR----ISN   84 (120)
T ss_dssp             CEECCSSEEEECTTCCEEECCEESCCCSCCCEEEEESSSTTCEEEEEECEECTTTCCSEEECCBSSTTBCCEE----ECS
T ss_pred             EEECCCceEEEeCCCCEEEEeEECCCCCCcEEEEEcCCCCCcEEEEEcCCcccCcccceeeccccCCCeEEEE----ECC
Confidence            34555667889999999999998765 668899999751    1211000      00100   011  2333    677


Q ss_pred             CCCCCCeEEEEEEEeCC
Q psy18191        197 KKDTDSGVYWCVARNEL  213 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N~~  213 (238)
                      ++.+|+|.|.|.+.|..
T Consensus        85 v~~~DsG~Y~C~~~~~~  101 (120)
T 2yz1_A           85 VTPEDAGTYYCVKFQKG  101 (120)
T ss_dssp             CCGGGCEEEEEEEEECC
T ss_pred             CCHHHCEEEEEEEEcCC
Confidence            79999999999999864

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.51  E-value=3.1e-07  Score=70.80  Aligned_cols=88  Identities=15%  Similarity=0.406  Sum_probs=55.5

Q ss_pred             CCceEEeCCCcEEEEEEEeeeC--CCEEEEEeCC--EEe---ecc-----------CCccEEEec---CCcEEEEEeecC
Q psy18191        138 PASAVVPRHEPTTLNCKADGYP--EPRIEWYKDG--SLV---SAE-----------IGSHRILLP---AGSLFFLSLVHG  196 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~g--~~l---~~~-----------~~~~~~~~~---~~~l~~~~vi~~  196 (238)
                      |..+.+.+|+++.|.|.+.+.|  .+.+.|+++.  ..+   ...           ...+.....   .+...  +.|..
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~--L~I~~   84 (215)
T 1c5d_H            7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVF--LKMNS   84 (215)
T ss_dssp             ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEE--EEESS
T ss_pred             CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEE--EEECC
Confidence            4567889999999999998865  5789999852  211   100           011222221   12222  23788


Q ss_pred             CCCCCCeEEEEEEEeCCCc--eeEEEEEEEEcc
Q psy18191        197 KKDTDSGVYWCVARNELGF--ARSKNATLDVAG  227 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N~~G~--~~s~~~~L~V~~  227 (238)
                      ++.+|+|.|.|.+.|..|.  .....+.|.|..
T Consensus        85 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~  117 (215)
T 1c5d_H           85 LQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSS  117 (215)
T ss_dssp             CCGGGCEEEEEEECCSSSCSCCBCCCEEEEECS
T ss_pred             CCcccCEEEEEEEecCCcccceEcCCEEEEecC
Confidence            8999999999999997532  111245777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	238
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	1e-15
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	1e-14
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-13
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-13
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-13
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-13
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	4e-13
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	6e-13
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-12
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-12
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	1e-12
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-11
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-11
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	4e-11
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	7e-11
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	8e-11
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	2e-10
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	3e-10
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	5e-10
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	3e-09
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	5e-09
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	8e-09
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	2e-08
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-08
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	3e-08
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	4e-08
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	5e-08
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	7e-08
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-07
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	2e-07
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	3e-07
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	4e-07
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	5e-07
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	5e-07
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	1e-06
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	3e-06
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	3e-06
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	4e-06
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	6e-06
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	6e-06
d1fnla1	84	b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3	9e-06
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	1e-05
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	2e-05
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	2e-05
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	4e-05
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	5e-05
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	8e-05
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	9e-05
d1f2qa1	82	b.1.1.4 (A:4-85) IgE high affinity receptor alpha	1e-04
d1de4a1	94	b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, a	2e-04
d2fcba1	85	b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD3	2e-04
d1uvqa1	99	b.1.1.2 (A:85-183) Class II MHC alpha chain, C-ter	3e-04
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	7e-04
d1d5mb1	98	b.1.1.2 (B:93-190) Class II MHC beta chain, C-term	0.001
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	0.001
d1hdmb1	98	b.1.1.2 (B:88-185) Class II MHC beta chain, C-term	0.002
d1fnga1	101	b.1.1.2 (A:82-182) Class II MHC alpha chain, C-ter	0.002
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	0.003
d1q0xl2	102	b.1.1.2 (L:108-212) Immunoglobulin light chain lam	0.003
d1k5na1	95	b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {H	0.004
d1fo0b_	112	b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus m	0.004

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (164), Expect = 1e-15
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGK 197
           P    V + +P  LNC  +G  EP I+W KDG++V      +  +     + FLSL   +
Sbjct: 3   PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 62

Query: 198 KDTDSGVYWCVARNELGFARSKNATLDVAG 227
           +  D+G YWC   +      S+   L V G
Sbjct: 63  RS-DAGRYWCQVEDGGETEISQPVWLTVEG 91

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 65.3 bits (158), Expect = 1e-14
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 7/95 (7%)

Query: 132 PRITEHPASAVVPR---HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
           P   E PA  + P     E  TL C+A   P     W  +G+ +     S   L+    +
Sbjct: 5   PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLV 64

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL 223
               +       D+G Y CVA N  G   S+ A+L
Sbjct: 65  ISNPVKA----KDAGSYQCVATNARGTVVSREASL 95

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 1e-13
 Identities = 20/97 (20%), Positives = 29/97 (29%), Gaps = 4/97 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P+I + P    V   E   L  K  G       W K    +             GS   +
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
                 +    G Y  +  N+LG  ++    L V  K
Sbjct: 61  LAA---RQEHCGCYTLLVENKLGSRQA-QVNLTVVDK 93

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 62.6 bits (151), Expect = 1e-13
 Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 3/97 (3%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P+I E   S  V +        +  G P+P  EWYK+G  +      +            
Sbjct: 5   PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL- 63

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            ++      DS      A N  G   S  A L V  K
Sbjct: 64  -VIRDVTGEDSASIMVKAINIAGETSSH-AFLLVQAK 98

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 1e-13
 Identities = 27/100 (27%), Positives = 34/100 (34%), Gaps = 11/100 (11%)

Query: 132 PRITE----HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLV--SAEIGSHRILLPA 185
           P  T           VP        C A G P P + W K+G        IG +++    
Sbjct: 2   PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 61

Query: 186 GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            SL           +D G Y CV  NE G   +    LDV
Sbjct: 62  WSLIM----ESVVPSDKGNYTCVVENEYGSI-NHTYHLDV 96

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 61.7 bits (149), Expect = 2e-13
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 132 PRITEHPASAV-VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           P+  + P   + V + +  T+ CK  G P P + W  +    +  +   R  +    L  
Sbjct: 3   PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHN----AKPLSGGRATVTDSGLVI 58

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             +    K+ D G Y C A NE G        + V
Sbjct: 59  KGV----KNGDKGYYGCRATNEHGDK-YFETLVQV 88

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 4e-13
 Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 13/96 (13%)

Query: 131 VPRITEHPASAVVPRHEPTTLNC-KADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
           VP  T  P    VP + P  L+C          I W++  + +     S  +L   G   
Sbjct: 1   VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTG--- 57

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                     T S ++ C A N  G A S+ AT+ +
Sbjct: 58  ---------VTQSTMFSCEAHNLKGLASSRTATVHL 84

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.0 bits (147), Expect = 6e-13
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 4/99 (4%)

Query: 132 PRITEHPAS--AVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
           P +    +   A     +  TL C ADG+PEP + W KDG  +  E       + +    
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            L++ +  K+ D   Y C+A N+ G     +  L V  K
Sbjct: 64  ELTIRNVDKN-DEAEYVCIAENKAGEQ-DASIHLKVFAK 100

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 1e-12
 Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 4/93 (4%)

Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLS 192
           RI   P S  V   E    +C  DG P P + W + G ++S             S F +S
Sbjct: 1   RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS 60

Query: 193 LVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            V   + +D G Y  V  N  G   +   TL +
Sbjct: 61  SV---QASDEGNYSVVVENSEGKQEA-EFTLTI 89

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 1e-12
 Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 12/105 (11%)

Query: 132 PRITE-HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           P +    PA+A           CK     +P I+W K      ++ G   +         
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 191 LSLVHGKKDT----------DSGVYWCVARNELGFARSKNATLDV 225
                 K+            D+G Y C+A N +G +   +A L V
Sbjct: 65  GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS-FHSAWLTV 108

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 59.7 bits (143), Expect = 1e-12
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK-DGSLVSAEIGSHRILLPAGSL 188
           + P + + PA  +   + PT L C  +G  +     +K DG   + +  +  +    GSL
Sbjct: 1   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 60

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL 223
            FL        +D G Y C A    G A S+  + 
Sbjct: 61  VFLRPQA----SDEGHYQCFAETPAGVASSRVISF 91

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.1 bits (137), Expect = 1e-11
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 132 PRIT-EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           P I  + PA       +  TL C A G P P+I+W K          + + L     L  
Sbjct: 5   PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLD-----GSQTSKWLSSEPLLHI 59

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            ++       D G Y C A N  G   +    + +
Sbjct: 60  QNV----DFEDEGTYECEAENIKGRD-TYQGRIII 89

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.8 bits (136), Expect = 2e-11
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 4/94 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           PR    P    V   +     C+      P + W+KD         S + +       + 
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKD---DRELKQSVKYMKRYNGNDYG 58

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             ++  K  D G Y   A+N  G        L+V
Sbjct: 59  LTINRVKGDDKGEYTVRAKNSYGTKEE-IVFLNV 91

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 56.1 bits (134), Expect = 4e-11
 Identities = 25/94 (26%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P  T+      V        +CK +GYP+P + W+KD + V             G+    
Sbjct: 9   PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL- 67

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             +      D   Y C A N LG A    A L V
Sbjct: 68  -TISEVCGDDDAKYTCKAVNSLGEATC-TAELLV 99

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.9 bits (131), Expect = 7e-11
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 8/94 (8%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P   +               +C A G P P + W +DG  ++++               L
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS------GGEL 55

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                  + DSG+Y CVA N+ G   + +A L V
Sbjct: 56  RFSKLVLE-DSGMYQCVAENKHGTVYA-SAELTV 87

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 8e-11
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 6/99 (6%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRI-----EWYKDGSLVSAEIGSHRILLPAG 186
           PR+    +S  +   E   L CK++  P             +   +     S   +  + 
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 187 SLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
               L + +   + D G Y C   +  G       TL V
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSD-QAIITLRV 100

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-10
 Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 3/99 (3%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPE-PRIEWYKDGSLVSAEIGSHRILLPAGSL 188
            V    +  +   +   +P  L C        P + W K       ++   +        
Sbjct: 2   DVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN 61

Query: 189 FFLSLVHGKKDT--DSGVYWCVARNELGFARSKNATLDV 225
               ++H +     D+G Y C A  +     S + TL V
Sbjct: 62  ISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYV 100

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 3e-10
 Identities = 21/96 (21%), Positives = 28/96 (29%), Gaps = 1/96 (1%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
           R P       +  V   +  T  C A G        +  G  V         +  +    
Sbjct: 1   RTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI 59

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
               V      D+G Y C+ R E G   S  A L V
Sbjct: 60  ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 53.0 bits (126), Expect = 5e-10
 Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 3/95 (3%)

Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           VP+        +    + T + C     P     ++K+G  V+             S   
Sbjct: 5   VPQYV--SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 62

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           L       + +  VY C   N +G  +  +  L V
Sbjct: 63  LLFKTTLPEDEG-VYTCEVDNGVGKPQKHSLKLTV 96

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.7 bits (120), Expect = 3e-09
 Identities = 19/94 (20%), Positives = 24/94 (25%), Gaps = 5/94 (5%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
                 P        E   + C       P I W   G  V  +     I+L    L   
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 61

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            +    K TD G Y C  R            + V
Sbjct: 62  GI----KKTDEGTYRCEGRILAR-GEINFKDIQV 90

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.8 bits (120), Expect = 5e-09
 Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 7/101 (6%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           P        + V       L C   DG P     W+KDG  +              S   
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 191 -----LSLVHGKKDTDSGVYWCVARNELGFA-RSKNATLDV 225
                  +       DSG Y+C A+N  G A RS+ A +D 
Sbjct: 63  DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA 103

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 8e-09
 Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 2/84 (2%)

Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSL 193
           +T+          E   L C+     +  ++W+K+G  +     S   +   G    L +
Sbjct: 3   VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHIL-I 60

Query: 194 VHGKKDTDSGVYWCVARNELGFAR 217
           + G    D+  Y  +       A+
Sbjct: 61  IEGATKADAAEYSVMTTGGQSSAK 84

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 2e-08
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 19/96 (19%)

Query: 132 PRITE--HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
           PR+ E   P +   P +   T  C+A G P P ++  K                      
Sbjct: 3   PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK----------------DGTFPL 46

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            +           G Y C AR+  G   ++  T++V
Sbjct: 47  PIGESVTVTRDLEGTYLCRARSTQGEV-TREVTVNV 81

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 2e-08
 Identities = 18/104 (17%), Positives = 30/104 (28%), Gaps = 12/104 (11%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYP---EPRIEWYKDGSLVSAEIGSHRILLPA--- 185
                 P    V      T + +  G      P ++W+K   +  +      + L     
Sbjct: 5   GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYD 64

Query: 186 ----GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                 LF L +   +    +G Y C    +  F    N  L V
Sbjct: 65  RASKVYLFELHITDAQPA-FTGGYRCEVSTKDKFD-CSNFNLTV 106

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 3e-08
 Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 6/101 (5%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           P        +         L C   DG P     W+KDG ++     S R    +  +  
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 191 L----SLVHGKKDTDSGVYWCVARNELGFA-RSKNATLDVA 226
                 +      +D+G Y C ARN  G    S    ++  
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 103

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 4e-08
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           VP +     +A V   +   L C+ +G    +  W         E  +  +         
Sbjct: 2   VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTEL----EQSATVMKSGGLPSLG 57

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
           L+L +   D +     C A N++G A   +  ++V+
Sbjct: 58  LTLANVTSDLNRKNVTCWAENDVGRA-EVSVQVNVS 92

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.3 bits (111), Expect = 5e-08
 Identities = 19/94 (20%), Positives = 27/94 (28%), Gaps = 4/94 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P+I        +       L     G P+P   W    S  +           + +  F 
Sbjct: 3   PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF- 61

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                 K  DSG Y    +NELG        + V
Sbjct: 62  --FPSAKRADSGNYKLKVKNELGED-EAIFEVIV 92

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 7e-08
 Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 6/104 (5%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLV-----SAEIGSHRILLP 184
             P I     +      E   + C     P P    +     V     S       I   
Sbjct: 5   NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 64

Query: 185 AGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            G +  L++ +  +     +Y C A N  G   ++   L   G 
Sbjct: 65  EGVISTLTISNIVRADFQTIYNCTAWNSFGSD-TEIIRLKEQGS 107

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 2e-07
 Identities = 24/125 (19%), Positives = 34/125 (27%), Gaps = 32/125 (25%)

Query: 132 PRIT-----EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAG 186
           P+I        P + VV       L+    G P P + W K  +  +          P  
Sbjct: 5   PKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPED 64

Query: 187 SLFFLSLVHGKKDT--------------------------DSGVYWCVARNELGFARSKN 220
           +      V  KK                            D GVY    +N +G     N
Sbjct: 65  TGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGED-QVN 123

Query: 221 ATLDV 225
            T+ V
Sbjct: 124 LTVKV 128

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 2e-07
 Identities = 24/95 (25%), Positives = 31/95 (32%), Gaps = 7/95 (7%)

Query: 136 EHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSH-RILLPAGSLFFLSL 193
           E     V   +E     C  +    +  I WYKD S          RI      L+F+  
Sbjct: 7   EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPA 66

Query: 194 VHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
               K  DSG Y+CV RN     R    +      
Sbjct: 67  ----KVEDSGHYYCVVRNSSYCLRI-KISAKFVEN 96

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (105), Expect = 3e-07
 Identities = 19/96 (19%), Positives = 27/96 (28%), Gaps = 11/96 (11%)

Query: 132 PRIT-EHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
             +T E   S  V      T  C A    P   + W +  +         R +   G L 
Sbjct: 2   IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHN----GKLPSRAMDFNGILT 57

Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             ++           Y C   N     +   ATL V
Sbjct: 58  IRNVQPSDAG----TYVCTGSNMFAMDQG-TATLHV 88

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 4e-07
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 8/101 (7%)

Query: 135 TEHPASAVVP---RHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPA---GSL 188
           +  PAS  +          +    DG P P + W  +GS+++         L      ++
Sbjct: 1   SHMPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60

Query: 189 FFLSLVHGK-KDTDSGVYWCVARNELGFARSKNATLDVAGK 228
               L   +    ++G Y  +A N  G A S +        
Sbjct: 61  RHGCLRLNQPTHVNNGNYTLLAANPFGQA-SASIMAAFMDN 100

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 5e-07
 Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 5/98 (5%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           PR+       +        +     G P P + W  +G  +      H      G +   
Sbjct: 6   PRVVSLEEPELR---LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 62

Query: 192 SLVHGK-KDTDSGVYWCVARNELGFARSKNATLDVAGK 228
            L+  K    ++G Y  +A+N LG A ++        +
Sbjct: 63  CLLFNKPTHYNNGNYTLIAKNPLGTA-NQTINGHFLKE 99

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 5e-07
 Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 12/91 (13%)

Query: 138 PASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHG 196
                    E   L C +    P  ++ ++++G             +P  +         
Sbjct: 7   TPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNFSIPQANH-------- 58

Query: 197 KKDTDSGVYWCVARNELGFARSKNATLDVAG 227
              + SG Y C          SK  T+ V  
Sbjct: 59  ---SHSGDYHCTGNIGYTLYSSKPVTITVQA 86

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 1e-06
 Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 12/89 (13%)

Query: 138 PASAVVPRHEPTTLNCKADGY-PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHG 196
               V    +P  L C +       ++ + ++G        +    +P  +L        
Sbjct: 9   APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLK------- 61

Query: 197 KKDTDSGVYWCVARNELGFARSKNATLDV 225
               DSG Y+C          S+   + +
Sbjct: 62  ----DSGSYFCRGLVGSKNVSSETVNITI 86

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 3e-06
 Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 13/97 (13%)

Query: 135 TEHPASAVVPRHEPTTLNC------KADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
            +      +P      L C      K +    P+++WYKD       + +         L
Sbjct: 3   AQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCK--PLLLDNIHFSGVKDRL 60

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             +++         G Y C A       +    T  +
Sbjct: 61  IVMNVAEK----HRGNYTCHASYTYL-GKQYPITRVI 92

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 3e-06
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 6/99 (6%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P IT   +           +     G P+P ++W+ +G++++        +       + 
Sbjct: 5   PTITFLESP---TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61

Query: 192 SLVHGKKDT--DSGVYWCVARNELGFARSKNATLDVAGK 228
             +     T  ++G Y  +A+NE G    K  +    G 
Sbjct: 62  GCLQLDNPTHMNNGDYTLIAKNEYGKD-EKQISAHFMGW 99

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 4e-06
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 10/90 (11%)

Query: 129 YRVP-RITEHPASAVVPRHEPTTLNCKADG---YPEPRIEWYKDGSLVSAEIGSHRILLP 184
           Y  P R+   P  +  P  +  TL C+ +G     +  +   +    +  E        P
Sbjct: 1   YWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGE---P 57

Query: 185 AGSLFFLSLVHGKKDTDSGVYWCVARNELG 214
           A     + +    +D     + C    +L 
Sbjct: 58  AEVTTTVLVR---RDHHGAQFSCRTELDLR 84

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 6e-06
 Identities = 8/86 (9%), Positives = 25/86 (29%), Gaps = 4/86 (4%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADG---YPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
            ++       +V   +  T+ C+           +  ++    +  E        P  + 
Sbjct: 3   RQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEAT 62

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELG 214
              +     ++     + C+A  +L 
Sbjct: 63  ATFNSTA-DREDGHRNFSCLAVLDLM 87

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 6e-06
 Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 11/98 (11%)

Query: 132 PRITEHPASAV-VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           P I       + V       L C   G       W  +GS++  +         +     
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 191 ----------LSLVHGKKDTDSGVYWCVARNELGFARS 218
                     L++   +       + C A+N  G   +
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAA 99

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 9e-06
 Identities = 16/94 (17%), Positives = 22/94 (23%), Gaps = 15/94 (15%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
             +   P    V   +  TL C+    PE     +                    S    
Sbjct: 6   AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQW------------FHNESLISSQASS 53

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             +      DSG Y C          S    L+V
Sbjct: 54  YFIDAATVNDSGEYRCQTNLS---TLSDPVQLEV 84

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.8 bits (94), Expect = 1e-05
 Identities = 12/94 (12%), Positives = 28/94 (29%), Gaps = 1/94 (1%)

Query: 133 RITEHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           ++   P+   +   E     C+      +  I W+       +       ++        
Sbjct: 2   QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 61

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             ++     D+G+Y CV   E G        + +
Sbjct: 62  LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 95

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 2e-05
 Identities = 18/97 (18%), Positives = 25/97 (25%), Gaps = 9/97 (9%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSL 188
           R P              +  TL C      +   + W        A           G  
Sbjct: 5   RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKP---AAGSHPSRWAGMGRR 61

Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             L  V   +  DSG Y C        A + +  +DV
Sbjct: 62  LLLRSV---QLHDSGNYSCYRAGRP--AGTVHLLVDV 93

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 2e-05
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 12/89 (13%)

Query: 138 PASAVVPRHEPTTLNCKADGY-PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHG 196
            ++ VV   +P  L C         ++ +YKDG  +     +H I +   +         
Sbjct: 7   ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNAT--------- 57

Query: 197 KKDTDSGVYWCVARNELGFARSKNATLDV 225
               DSG Y+C  +       S+   + V
Sbjct: 58  --VEDSGTYYCTGKVWQLDYESEPLNITV 84

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 4e-05
 Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 4/87 (4%)

Query: 132 PRITEHPASAV-VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
               +    A  V +     L  +     +  ++W K+G       GS  I    G+   
Sbjct: 6   TAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQ-EIQMSGSKYIFESIGAKRT 63

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFAR 217
           L++       D   Y CV   E     
Sbjct: 64  LTISQCSLA-DDAAYQCVVGGEKCSTE 89

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.3 bits (90), Expect = 5e-05
 Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 10/105 (9%)

Query: 128 GYRVPRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRI-LLPA 185
           G+      E      +         C     YP     W  +           R      
Sbjct: 1   GFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT 60

Query: 186 GSLFFLSLVHGKKDTDSGVYWCVARNELGFAR----SKNATLDVA 226
           G+L+        + +D G Y C A + + F      SK + L +A
Sbjct: 61  GNLYIAKT----EASDLGNYSCFATSHIDFITKSVFSKFSQLSLA 101

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 8e-05
 Identities = 10/85 (11%), Positives = 21/85 (24%), Gaps = 4/85 (4%)

Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLS 192
            + +      V   E      +    P+   +W            S    +       + 
Sbjct: 3   EVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLK---GQPLTASPDCEIIEDGKKHIL 58

Query: 193 LVHGKKDTDSGVYWCVARNELGFAR 217
           ++H  +   +G     A N    A 
Sbjct: 59  ILHNCQLGMTGEVSFQAANAKSAAN 83

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 9e-05
 Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 12/110 (10%)

Query: 135 TEHPASAVVPRHEPTTLNCKADGYP---EPRIEWYKDGSLVSAEIGSHRI-------LLP 184
            E P    V   E  T   K        +P I+W+K   +  A      +          
Sbjct: 4   IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS 63

Query: 185 AGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTATD 234
               F + ++  K +  +G Y C    +  F  S +  L+V     T  +
Sbjct: 64  RVYTFEMQIIKAKDN-FAGNYRCEVTYKDKFD-SCSFDLEVHESTGTTPN 111

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 1e-04
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 15/94 (15%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
           P+++ +P    + + E  TL C  + + E     +            H   L   +   L
Sbjct: 2   PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWF-----------HNGSLSEETNSSL 50

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           ++V+ K + DSG Y C  +       S+   L+V
Sbjct: 51  NIVNAKFE-DSGEYKCQHQQV---NESEPVYLEV 80

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 2e-04
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 12/89 (13%)

Query: 130 RVP---RITEHPASAVVPRHEPTTLNCKADG-YPEP-RIEWYKDGSLVSAEIGSHRILLP 184
           +VP   ++T H  S        TTL C+A   YP+   ++W KD   + A+    + +LP
Sbjct: 2   QVPPLVKVTHHVTS------SVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLP 55

Query: 185 AGSLFFLSLVHGKKDTDSG-VYWCVARNE 212
            G   +   +           Y C   + 
Sbjct: 56  NGDGTYQGWITLAVPPGEEQRYTCQVEHP 84

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 2e-04
 Identities = 15/94 (15%), Positives = 23/94 (24%), Gaps = 15/94 (15%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
             +   P    V + +  TL C+    PE     +     +                   
Sbjct: 5   AVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSYR--------- 55

Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
                  + DSG Y C        + S    L V
Sbjct: 56  ---FKANNNDSGEYTCQTGQT---SLSDPVHLTV 83

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} Length = 99

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADG-YPEP-RIEWYKDGSLVSAEIGSHRILLPAGS 187
            VP +T    S V     P TL C  D  +P    I W  +G  V+  +     L  +  
Sbjct: 4   EVPEVTVFSKSPVTLGQ-PNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDH 62

Query: 188 LFFLSLVHGKKDTDSGVYWCVARNE 212
            FF         +   +Y C   + 
Sbjct: 63  SFFKISYLTFLPSADEIYDCKVEHW 87

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 7e-04
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 6/99 (6%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
             +        +P + P  L+C   G+  PR+EW  D    +  +  +  +  +      
Sbjct: 5   VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVT 64

Query: 192 SL-----VHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
            L            D+G Y C+   E G +      + +
Sbjct: 65  FLPTGITFKSVTREDTGTYTCMVSEEGGNS-YGEVKVKL 102

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIE--WYKDGSLVSAEIGSHRILLPAGSLF 189
           P +T +PA     +H    L C  +G+    IE  W+++G      + S  + +  G   
Sbjct: 5   PEVTVYPAKTQPLQH-HNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGL-IQNGDWT 62

Query: 190 FLSLVHGKKDTDSG-VYWCVARNE 212
           F +LV  +    SG VY C   + 
Sbjct: 63  FQTLVMLETVPRSGEVYTCQVEHP 86

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.1 bits (79), Expect = 0.001
 Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 14/103 (13%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG---------SLVSAEIGSHRIL 182
             +    +   VP +E   L C   G+  PR+EW             +       + R+ 
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
             +  + F S+           Y C+   E G    +  ++ +
Sbjct: 62  FSSSGITFSSVTRKDNGE----YTCMVSEEGGQNYGE-VSIHL 99

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 0.002
 Identities = 18/85 (21%), Positives = 24/85 (28%), Gaps = 3/85 (3%)

Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADG-YPEP-RIEWYKDGSLVSAEIGSHRILLPAGS 187
           R P +     +    R  P  L C   G YP    I W K+G LV               
Sbjct: 2   RPPSVQVAKTTPFNTRE-PVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDW 60

Query: 188 LFFLSLVHGKKDTDSGVYWCVARNE 212
            +          +    Y CV  + 
Sbjct: 61  TYQTLSHLALTPSYGDTYTCVVEHI 85

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

 Score = 34.2 bits (78), Expect = 0.002
 Identities = 17/83 (20%), Positives = 25/83 (30%), Gaps = 3/83 (3%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADG-YPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLF 189
           P +T    S V     P  L C  D   P    + W ++G  V+  +     L     LF
Sbjct: 6   PEVTVLSRSPVNLGE-PNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLF 64

Query: 190 FLSLVHGKKDTDSGVYWCVARNE 212
                     +    Y C   + 
Sbjct: 65  RKFHYLTFLPSTDDFYDCEVDHW 87

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.2 bits (77), Expect = 0.003
 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 6/95 (6%)

Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
           V +      +  V   +  TL C ++         +        +       +       
Sbjct: 3   VTQPFLQVTNTTVKELDSVTLTCLSNDIGANIQWLFNS------QSLQLTERMTLSQNNS 56

Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
           +  +   K  D+G Y C   N +   RS +  LD+
Sbjct: 57  ILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI 91

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (77), Expect = 0.003
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 132 PRITEHPASAVVPRHEPTTLNCKADGY--PEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
           P +T  P S+        TL C    +      ++W  DG+ V+A + + +    + + +
Sbjct: 6   PTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKY 65

Query: 190 FLS--LVHGKKDTDSG-VYWCVARNE 212
             S  L    +  +    Y C   +E
Sbjct: 66  MASSYLTLTARAWERHSSYSCQVTHE 91

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (76), Expect = 0.004
 Identities = 17/78 (21%), Positives = 23/78 (29%), Gaps = 7/78 (8%)

Query: 133 RITEHPASAVVPRHEPTTLNCKADG-YPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
            +T HP S         TL C A G YP    + W +DG   + +             F 
Sbjct: 7   HVTHHPIS-----DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQ 61

Query: 191 LSLVHGKKDTDSGVYWCV 208
                     +   Y C 
Sbjct: 62  KWAAVVVPSGEEQRYTCH 79

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

 Score = 33.9 bits (77), Expect = 0.004
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK 167
           V  + ++P   +VPR +   L C       P + WY+
Sbjct: 1   VTLLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQ 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	238
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.81
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.79
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.78
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.78
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.75
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.75
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.74
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.73
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.72
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.71
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.71
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.7
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.7
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.7
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.69
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.68
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.66
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.66
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.65
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.65
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.64
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.64
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.63
d2avga1	110	Cardiac myosin binding protein C, different domain	99.63
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.63
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.62
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.62
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.62
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.62
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.6
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.6
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.6
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.6
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.58
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.57
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.56
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.56
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.54
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.53
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.53
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.51
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.51
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.5
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.5
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.5
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.49
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.48
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.48
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.47
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.47
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.46
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.44
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.43
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.42
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.41
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.4
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.31
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.02
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.92
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.87
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.71
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.67
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.62
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.54
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.34
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.31
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.3
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.29
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.29
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.23
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.21
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.21
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.21
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.2
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.2
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.19
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.19
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.18
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.17
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.16
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.16
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.16
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.13
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.13
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.13
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.12
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.11
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.09
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.09
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.08
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.08
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.06
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.06
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.06
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.05
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.05
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.04
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.01
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.0
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.98
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.98
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.98
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.98
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.97
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.97
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.97
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.97
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.96
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.95
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.93
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.92
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.92
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.92
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.9
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.89
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.87
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.84
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.84
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.83
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.83
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.83
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.82
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.81
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.78
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.77
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.77
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.76
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.76
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.76
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.75
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.74
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.74
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.74
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.74
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.74
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.72
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.67
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.66
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.64
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.62
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.62
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.61
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.61
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.6
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.59
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.58
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.57
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.57
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.56
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.53
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.52
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.52
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.5
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.47
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.45
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.42
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.4
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.4
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.39
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.38
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.38
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	97.38
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.38
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.34
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.34
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.32
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.29
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.29
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.26
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.25
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	97.22
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.22
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.19
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.18
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.17
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.17
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.16
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.14
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.13
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	97.13
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.08
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	97.07
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.04
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.02
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	96.99
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	96.98
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	96.97
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	96.96
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	96.96
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	96.94
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	96.89
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	96.88
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	96.88
d1pd6a_	94	Cardiac myosin binding protein C, different domain	96.88
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	96.87
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	96.87
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	96.86
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.86
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	96.85
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	96.84
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	96.81
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	96.79
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	96.79
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	96.71
d1gxea_	130	Cardiac myosin binding protein C, different domain	96.71
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	96.69
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	96.68
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.68
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	96.68
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	96.65
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	96.65
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	96.64
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	96.62
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	96.6
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	96.57
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.57
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.56
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	96.56
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.56
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	96.55
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	96.55
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	96.55
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.53
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	96.53
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	96.52
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.52
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.51
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	96.49
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	96.48
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	96.47
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.44
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	96.43
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	96.4
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.38
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	96.38
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	96.37
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.35
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.35
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.35
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	96.34
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	96.34
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	96.33
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	96.31
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	96.3
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	96.28
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	96.26
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.25
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	96.24
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.24
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.18
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	96.18
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	96.17
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.17
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	96.16
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	96.15
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	96.14
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	96.13
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	96.12
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	96.11
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	96.1
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.1
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	96.09
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	96.09
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	96.08
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	96.08
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	96.06
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	96.06
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.06
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	96.04
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	96.03
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.03
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.0
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.0
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	95.99
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	95.99
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	95.98
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	95.96
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.95
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	95.94
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	95.92
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	95.88
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	95.87
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	95.86
d2avga1	110	Cardiac myosin binding protein C, different domain	95.84
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	95.83
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	95.83
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	95.8
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	95.76
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	95.74
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	95.72
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	95.72
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	95.71
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	95.7
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	95.65
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	95.65
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	95.63
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	95.62
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	95.56
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	95.55
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	95.53
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	95.48
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	95.47
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	95.34
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	95.26
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	95.25
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	95.24
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	95.01
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	94.9
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	94.87
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	94.77
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	94.7
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	94.68
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	94.42
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	94.36
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	93.7
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	93.57
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	93.02
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	93.02
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	92.98
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	92.88
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	92.72
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	92.44
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	91.86
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	90.56
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	90.45
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	89.92
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	89.42
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	85.88
d1i1ra1	100	Cytokine receptor gp130 cytokine-binding domains {	85.24
d1igyb3	116	Immunoglobulin heavy chain gamma constant domain 2	83.49

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.81  E-value=1.1e-19  Score=120.72  Aligned_cols=89  Identities=28%  Similarity=0.473  Sum_probs=76.5

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      +|.|...+.+..+..|+++.|.|.+.|.|.|.++|++||..+...   .++...++.|.    |..+..+|+|.|+|.|.
T Consensus         1 kP~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~---~~~~~~~~~L~----i~~v~~~D~G~Y~C~a~   73 (89)
T d1cs6a4           1 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQ---NRIEVSGGELR----FSKLVLEDSGMYQCVAE   73 (89)
T ss_dssp             EEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCC---SSEEEETTEEE----ESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeecccccc---ceeeeeeeeEE----EEeecccCCEEEEEEEE
Confidence            478888999999999999999999999999999999999998753   33445566665    56669999999999999


Q ss_pred             eCCCceeEEEEEEEEcc
Q psy18191        211 NELGFARSKNATLDVAG  227 (238)
Q Consensus       211 N~~G~~~s~~~~L~V~~  227 (238)
                      |..|...+ .+.|.|+.
T Consensus        74 N~~G~~~~-~~~l~V~A   89 (89)
T d1cs6a4          74 NKHGTVYA-SAELTVQA   89 (89)
T ss_dssp             ETTEEEEE-EEEEEEEC
T ss_pred             eCCCEEEE-EEEEEEEC
Confidence            99999974 89999863

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.79  E-value=1.1e-18  Score=118.09  Aligned_cols=95  Identities=23%  Similarity=0.303  Sum_probs=78.0

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEe-cCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      .+|.|...+.+..+.+|+++.|.|.+.|.|.|.+.|++++..|..+ ....... .++...+  .|..+..+|+|.|+|.
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~-~~~~~~~~~~~~~~L--~I~~~~~~D~G~Y~c~   79 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERS-DRIYWYWPEDNVCEL--VIRDVTGEDSASIMVK   79 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC-SSEEEEEEETTEEEE--EECSCCGGGCEEEEEE
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeee-eeeEEEeccceEEEE--EeccCccccCEEEEEE
Confidence            4788998899999999999999999999999999999999999764 2222222 3333222  3788899999999999


Q ss_pred             EEeCCCceeEEEEEEEEccC
Q psy18191        209 ARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~~  228 (238)
                      |.|..|... ..+.|.|+++
T Consensus        80 a~N~~G~~~-~~~~L~V~~k   98 (98)
T d1g1ca_          80 AINIAGETS-SHAFLLVQAK   98 (98)
T ss_dssp             EEETTEEEE-EEEEEEEECC
T ss_pred             EEECCcEEE-EEEEEEEEEC
Confidence            999999997 4999999764

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.1e-18  Score=118.58  Aligned_cols=99  Identities=18%  Similarity=0.245  Sum_probs=80.6

Q ss_pred             CEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       132 P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      |.|...+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+... ....+...++...  +.|..+..+|+|.|+|.|.|
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~-~~~~~~~~~~~~~--L~I~~~~~~D~G~Y~C~a~N   77 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES-EHMKVENSENGSK--LTILAARQEHCGCYTLLVEN   77 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCS-SSEEEEECSSEEE--EEETTCCTTTCEEEEEEEEC
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccC-CcEEEEEecceeE--EEEeeCCcccCEEEEEEEEE
Confidence            56777788999999999999999999999999999999988753 2333333333222  23788999999999999999


Q ss_pred             CCCceeEEEEEEEEccCCCCCCC
Q psy18191        212 ELGFARSKNATLDVAGKISTATD  234 (238)
Q Consensus       212 ~~G~~~s~~~~L~V~~~~~~~~~  234 (238)
                      ..|... ..+.|.|.++|++|.-
T Consensus        78 ~~G~~~-~~~~l~V~~~P~pP~g   99 (101)
T d2cqva1          78 KLGSRQ-AQVNLTVVDKPDPPAG   99 (101)
T ss_dssp             SSCEEE-CCEEEEEECSCSCCCC
T ss_pred             CCCEEE-EEEEEEEEecCCCcCC
Confidence            999997 4999999999887753

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.78  E-value=2.2e-18  Score=117.34  Aligned_cols=97  Identities=26%  Similarity=0.361  Sum_probs=78.7

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      ...+|.|...|.++.+.+|+++.|.|.+.|.|.|.+.|+++|..|..+ ....+....... ..+.|..+..+|+|.|+|
T Consensus         5 p~~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~-~~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C   82 (102)
T d1fhga_           5 PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES-RHFQIDYDEEGN-CSLTISEVCGDDDAKYTC   82 (102)
T ss_dssp             CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCS-SSEEEEECTTCE-EEEEESSCCGGGCEEEEE
T ss_pred             CCCCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccce-eeEeEEEecCce-eeeEecCCCHHhCEEEEE
Confidence            446899999999999999999999999999999999999999999764 233333322222 223378889999999999


Q ss_pred             EEEeCCCceeEEEEEEEEcc
Q psy18191        208 VARNELGFARSKNATLDVAG  227 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~~  227 (238)
                      .|.|..|... .++.|.|+.
T Consensus        83 ~a~N~~G~~~-~~~~L~V~s  101 (102)
T d1fhga_          83 KAVNSLGEAT-CTAELLVET  101 (102)
T ss_dssp             EEEETTEEEE-EEEEEEEEC
T ss_pred             EEEECCcEEE-EEEEEEEEE
Confidence            9999999997 499999864

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.78  E-value=6.3e-19  Score=118.98  Aligned_cols=96  Identities=20%  Similarity=0.263  Sum_probs=77.9

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      +|.|+..|.+..+.+|+++.|.|.+.|.|.|.+.|++++..|..+ ....+ ...+.... +.|..+..+|+|.|+|.|.
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~-~~~~~-~~~~~~~~-L~I~~~~~~D~G~Y~C~a~   77 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS-VKYMK-RYNGNDYG-LTINRVKGDDKGEYTVRAK   77 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSB-TTBBC-CCSTTEEE-EEESCCCSGGGSCEEEEEE
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeecccee-eEEEE-EecCCeeE-EEeCCCceecCEEEEEEEE
Confidence            488999999999999999999999999999999999999998753 22222 22333322 2378889999999999999


Q ss_pred             eCCCceeEEEEEEEEccCCC
Q psy18191        211 NELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       211 N~~G~~~s~~~~L~V~~~~~  230 (238)
                      |..|... ..+.|.|...++
T Consensus        78 N~~G~~~-~~~~l~V~~~~~   96 (97)
T d1koaa1          78 NSYGTKE-EIVFLNVTRHSE   96 (97)
T ss_dssp             ETTEEEE-EEECCEEECSCC
T ss_pred             ECCCEEE-EEEEEEEeecCC
Confidence            9999996 499999977654

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.75  E-value=3.8e-18  Score=114.18  Aligned_cols=92  Identities=20%  Similarity=0.201  Sum_probs=75.6

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      +|.|...+.++.+.+|+++.|.|.+.|.|.|.+.|++++..+..+ .........+...+  .|+.+..+|+|.|+|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~-~~~~~~~~~~~~~L--~I~~~~~~D~G~Y~c~a~   78 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALA-PELLVDAKSSTTSI--FFPSAKRADSGNYKLKVK   78 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCS-TTSEEEEETTEEEE--ECTTBCGGGCEEEEEEEE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceee-eeeeecccccceee--ccccccccccEEEEEEEE
Confidence            688888888999999999999999999999999999999888754 23333333333322  378889999999999999


Q ss_pred             eCCCceeEEEEEEEEc
Q psy18191        211 NELGFARSKNATLDVA  226 (238)
Q Consensus       211 N~~G~~~s~~~~L~V~  226 (238)
                      |..|+.. ..+.|.|+
T Consensus        79 N~~G~~~-~~~~l~V~   93 (93)
T d1wiua_          79 NELGEDE-AIFEVIVQ   93 (93)
T ss_dssp             ETTEEEE-EEEEEEEC
T ss_pred             ECCCEEE-EEEEEEEC
Confidence            9999997 59999884

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=8e-18  Score=110.55  Aligned_cols=83  Identities=30%  Similarity=0.525  Sum_probs=69.2

Q ss_pred             CEEEeCCCceEEeCCCcEEEEEEEeeeCCC-EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        132 PRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       132 P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      |.|...|.+..+.+|+++.|.|.+.|.|.| +|+|+|||..+...   .     .+.+.+..    ...+|+|.|+|.|.
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~---~-----~~~~~l~~----~~~~d~G~Y~C~A~   69 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP---A-----PSPSVLNV----TGVTQSTMFSCEAH   69 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCS---E-----ESSEEEEE----CCCSSCEEEEEEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCC---C-----CcceEEec----CCccccEEEEEEEE
Confidence            789999999999999999999999999998 89999999988642   1     13344333    37789999999999


Q ss_pred             eCCCceeEEEEEEEEc
Q psy18191        211 NELGFARSKNATLDVA  226 (238)
Q Consensus       211 N~~G~~~s~~~~L~V~  226 (238)
                      |.+|...|..++|.|+
T Consensus        70 N~~G~~~S~~~~v~Vk   85 (85)
T d1rhfa2          70 NLKGLASSRTATVHLQ   85 (85)
T ss_dssp             ETTEEEECCCEEEEEC
T ss_pred             cCCCcEEEEEEEEEEC
Confidence            9999876678888874

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.74  E-value=4.8e-18  Score=112.72  Aligned_cols=87  Identities=28%  Similarity=0.532  Sum_probs=71.3

Q ss_pred             CCEEEeCCCc-eEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        131 VPRITEHPAS-AVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       131 ~P~i~~~~~~-~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      +|.|...|.. +.+.+|+++.|.|.+.|.|.|.+.|+++|..+..   +. ....++.|.    |..+..+|+|.|+|.|
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~---~~-~~~~~~~L~----i~~v~~~d~G~Y~C~a   73 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG---GR-ATVTDSGLV----IKGVKNGDKGYYGCRA   73 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCS---SS-EEEETTEEE----ESSCCSTTCEEEEEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCcc---cc-EEEeeeeEE----ECCCChhhCEEEEEEE
Confidence            5778777654 6789999999999999999999999999999863   22 333455554    6677999999999999


Q ss_pred             EeCCCceeEEEEEEEEc
Q psy18191        210 RNELGFARSKNATLDVA  226 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V~  226 (238)
                      .|..|... ..+.|.|.
T Consensus        74 ~N~~G~~~-~~~~l~V~   89 (89)
T d1biha4          74 TNEHGDKY-FETLVQVN   89 (89)
T ss_dssp             EETTEEEE-EEEEEEEC
T ss_pred             EECCCEEE-EEEEEEEC
Confidence            99999996 58888874

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1e-17  Score=111.58  Aligned_cols=89  Identities=28%  Similarity=0.522  Sum_probs=71.2

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      |.++++.+|+++.|.|.+.|.|.|.+.|++++..+... ....+..........+.|+.++.+|+|.|+|.|.|..|...
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   81 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNL-DQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI   81 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSS-EEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEE
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccc-eeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEE
Confidence            56788999999999999999999999999999998753 22223333333333345888999999999999999999876


Q ss_pred             EEEEEEEEcc
Q psy18191        218 SKNATLDVAG  227 (238)
Q Consensus       218 s~~~~L~V~~  227 (238)
                      |..++|.|.+
T Consensus        82 S~~~~l~V~G   91 (91)
T d1rhfa1          82 SQPVWLTVEG   91 (91)
T ss_dssp             CCCEEEEEEC
T ss_pred             EEEEEEEEEC
Confidence            6789999864

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.72  E-value=6.9e-18  Score=112.43  Aligned_cols=87  Identities=26%  Similarity=0.375  Sum_probs=70.3

Q ss_pred             cCCEEEeC-CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        130 RVPRITEH-PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       130 ~~P~i~~~-~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      .+|.|... |.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+..     .....++.|.    |..+..+|+|.|+|.
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~-----~~~~~~~~L~----I~~v~~~D~G~Y~C~   73 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS-----KWLSSEPLLH----IQNVDFEDEGTYECE   73 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC-----CCSBSSSEEE----ECSCCGGGCEEEEEE
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccce-----EeeeeeeEEE----eCCCCccCCEEEEEE
Confidence            56777764 7888999999999999999999999999997654332     1223345555    566799999999999


Q ss_pred             EEeCCCceeEEEEEEEEc
Q psy18191        209 ARNELGFARSKNATLDVA  226 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~  226 (238)
                      |.|.+|... ..+.|.|+
T Consensus        74 a~N~~G~~~-~~~~l~V~   90 (91)
T d1cs6a3          74 AENIKGRDT-YQGRIIIH   90 (91)
T ss_dssp             EEETTEEEE-EEEEEEEE
T ss_pred             EEECCCEEE-EEEEEEEE
Confidence            999999996 58999886

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=4.3e-17  Score=110.40  Aligned_cols=94  Identities=28%  Similarity=0.517  Sum_probs=72.0

Q ss_pred             cCCEEEeCCCc--eEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCC-ccEEEec--CCcEEEEEeecCCCCCCCeE
Q psy18191        130 RVPRITEHPAS--AVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG-SHRILLP--AGSLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       130 ~~P~i~~~~~~--~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~-~~~~~~~--~~~l~~~~vi~~v~~~d~G~  204 (238)
                      .||.|...+..  .++..|+++.|.|.+.|.|.|.+.|+++|..+..... .......  .+.|.    |..+..+|+|.
T Consensus         2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~----I~~v~~~D~G~   77 (100)
T d1qz1a3           2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELT----IRNVDKNDEAE   77 (100)
T ss_dssp             EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEE----ECSCCGGGCEE
T ss_pred             cCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEE----eCCCCcccCEE
Confidence            47888766554  4557899999999999999999999999998865422 1222222  23343    67779999999


Q ss_pred             EEEEEEeCCCceeEEEEEEEEccC
Q psy18191        205 YWCVARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       205 Y~C~a~N~~G~~~s~~~~L~V~~~  228 (238)
                      |+|.|.|..|... ..+.|.|..+
T Consensus        78 Y~C~a~N~~G~~~-~~~~l~V~~K  100 (100)
T d1qz1a3          78 YVCIAENKAGEQD-ASIHLKVFAK  100 (100)
T ss_dssp             EEEEEEETTEEEE-EEEEEEEECC
T ss_pred             EEEEEEECCCEEE-EEEEEEEEEC
Confidence            9999999999996 5999998653

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.71  E-value=1.5e-17  Score=111.40  Aligned_cols=90  Identities=26%  Similarity=0.475  Sum_probs=72.5

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCC-EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .|.|...|.++.+.+|+.+.|.|.+.|.|.| .+.|+++|..+............+++|.    |..+..+|+|.|+|.|
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~----i~~v~~~D~G~Y~C~a   77 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV----FLRPQASDEGHYQCFA   77 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEE----ESSCCGGGCEEEEEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEE----EeccChhcCeEEEEEE
Confidence            5788888889999999999999999999976 7999999998876433333334456665    6667999999999999


Q ss_pred             EeCCCceeEEEEEEE
Q psy18191        210 RNELGFARSKNATLD  224 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~  224 (238)
                      .|..|...+..+.|.
T Consensus        78 ~N~~G~~~s~~v~l~   92 (94)
T d1biha1          78 ETPAGVASSRVISFR   92 (94)
T ss_dssp             EETTEEEECCCEEEE
T ss_pred             EeCCCEEEEEEEEEE
Confidence            999998766565554

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.70  E-value=1.1e-17  Score=112.85  Aligned_cols=91  Identities=33%  Similarity=0.521  Sum_probs=72.6

Q ss_pred             cCCEEEeCCCceEEeCC---CcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEE
Q psy18191        130 RVPRITEHPASAVVPRH---EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G---~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      .+|.|...|.+..+.+|   +++.|.|.+.|.|.|.++|+++|..+........ ...++.+.   +|..+..+|+|.|+
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~-~~~~~~~l---~i~~~~~~d~G~Y~   78 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRY-RLVAGDLV---ISNPVKAKDAGSYQ   78 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSE-EEETTEEE---EESCCHHHHCEEEE
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceE-EeeeeeEE---EEecccccCCEEEE
Confidence            57899988988888776   6899999999999999999999999876533333 33344432   35667889999999


Q ss_pred             EEEEeCCCceeEEEEEEE
Q psy18191        207 CVARNELGFARSKNATLD  224 (238)
Q Consensus       207 C~a~N~~G~~~s~~~~L~  224 (238)
                      |.|.|.+|...|..++|.
T Consensus        79 C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          79 CVATNARGTVVSREASLR   96 (97)
T ss_dssp             EEEEETTEEEECCCEEEE
T ss_pred             EEEEECCCEEEEEEEEEe
Confidence            999999999866677775

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.70  E-value=6.4e-18  Score=112.58  Aligned_cols=89  Identities=25%  Similarity=0.431  Sum_probs=70.9

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~  213 (238)
                      |+..|.++.+.+|+++.|.|.+.|.|.|.+.|+++|..+... ....+........  +.|..+..+|+|.|+|.|.|..
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~-~~~~~~~~~~~~~--L~i~~v~~~D~G~Y~C~a~N~~   78 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTS-ARHQVTTTKYKST--FEISSVQASDEGNYSVVVENSE   78 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSS-SSCEEEECSSEEE--EECSSCCSCCCEEEEEECBCSS
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccc-cceeeeeecceeE--EeecCCCHHHCEEEEEEEEECC
Confidence            344577899999999999999999999999999999888754 2333333333222  2378889999999999999999


Q ss_pred             CceeEEEEEEEEc
Q psy18191        214 GFARSKNATLDVA  226 (238)
Q Consensus       214 G~~~s~~~~L~V~  226 (238)
                      |... ..+.|.|+
T Consensus        79 G~~~-~~~~l~V~   90 (91)
T d1tnna_          79 GKQE-AEFTLTIQ   90 (91)
T ss_dssp             CBCC-EEEEEECC
T ss_pred             CEEE-EEEEEEEE
Confidence            9997 48999886

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=1.1e-16  Score=106.59  Aligned_cols=90  Identities=22%  Similarity=0.281  Sum_probs=74.5

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      ++.|...|.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+............++.|.    |..+..+|+|.|+|.|.
T Consensus         1 k~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~----I~~~~~~D~G~Y~C~a~   76 (92)
T d1epfa2           1 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ----IRGIKKTDEGTYRCEGR   76 (92)
T ss_dssp             CSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEE----ETTCCGGGCEEEEEEEE
T ss_pred             CcEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEE----ECCCCHHhCEEEEEEEE
Confidence            35677788999999999999999999999999999999999987644555556667765    66779999999999999


Q ss_pred             eCCCceeEEEEEEEE
Q psy18191        211 NELGFARSKNATLDV  225 (238)
Q Consensus       211 N~~G~~~s~~~~L~V  225 (238)
                      |..|... ....|.|
T Consensus        77 n~~~~~~-~~~~i~V   90 (92)
T d1epfa2          77 ILARGEI-NFKDIQV   90 (92)
T ss_dssp             EGGGTEE-EEEEEEE
T ss_pred             ECcCCEE-EEEEEEE
Confidence            9887664 3666665

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.69  E-value=5.1e-17  Score=109.41  Aligned_cols=80  Identities=30%  Similarity=0.503  Sum_probs=64.9

Q ss_pred             eEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCcc--EEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeE
Q psy18191        141 AVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSH--RILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARS  218 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~--~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s  218 (238)
                      ..+..|+++.|.|.+.|.|.|.+.|++||..+.......  ......+.|.    |..+..+|+|.|+|.|.|..|... 
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~----I~~v~~~D~G~Y~C~a~N~~G~~~-   89 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI----MESVVPSDKGNYTCVVENEYGSIN-   89 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEE----ECSCCGGGCEEEEEEEEETTEEEE-
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEE----ECCCCcccCEEEEEEEEECCCEEE-
Confidence            567899999999999999999999999999997642222  2222334554    666799999999999999999986 


Q ss_pred             EEEEEEE
Q psy18191        219 KNATLDV  225 (238)
Q Consensus       219 ~~~~L~V  225 (238)
                      .++.|.|
T Consensus        90 ~~~~l~V   96 (97)
T d3dara1          90 HTYHLDV   96 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5999987

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.68  E-value=8.3e-17  Score=108.36  Aligned_cols=86  Identities=19%  Similarity=0.252  Sum_probs=67.0

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEec-CCcEEEEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLP-AGSLFFLSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~-~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      +.++.+.+|+++.|.|.+.|.|.|.+.|+++|..+............ .....  +.|..++.+|+|.|+|.|.|.+|..
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~--L~I~~~~~~D~G~Y~C~a~N~~G~~   87 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR--LLFKTTLPEDEGVYTCEVDNGVGKP   87 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSE--EEESSCCGGGCEEEEEEECCSSSSC
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCE--EEEEeccccccEEEEEEEEECCCcE
Confidence            47899999999999999999999999999999998754222222111 11111  2377889999999999999999997


Q ss_pred             eEEEEEEEE
Q psy18191        217 RSKNATLDV  225 (238)
Q Consensus       217 ~s~~~~L~V  225 (238)
                      .+.++.|.|
T Consensus        88 ~s~s~~L~V   96 (97)
T d1biha3          88 QKHSLKLTV   96 (97)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            666788887

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.6e-16  Score=105.39  Aligned_cols=103  Identities=17%  Similarity=0.197  Sum_probs=73.9

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEe-cCCcEEEEEeecCCCCCCCeEEE
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL-PAGSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      |..||.|......   ..+....|.|.+.|.|.|.+.|+++|..+........... ........+.|..+..+|+|.|+
T Consensus         2 V~~PP~i~~~~~~---~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (105)
T d1wwca_           2 VYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT   78 (105)
T ss_dssp             CCCCCCCCCCCCC---CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             EEcCCeeEEeCCC---EEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEE
Confidence            5678887543221   2344556888999999999999999999876422221122 22222333447788999999999


Q ss_pred             EEEEeCCCceeEEEEEEEEccCCCCCCC
Q psy18191        207 CVARNELGFARSKNATLDVAGKISTATD  234 (238)
Q Consensus       207 C~a~N~~G~~~s~~~~L~V~~~~~~~~~  234 (238)
                      |.|.|..|... .++.|.|..+|.+..+
T Consensus        79 C~a~N~~G~~~-~~~~v~V~~~P~P~~~  105 (105)
T d1wwca_          79 LIAKNPLGTAN-QTINGHFLKEPFPVDE  105 (105)
T ss_dssp             EEEEETTEEEE-EEEEECCSCCCCCSCC
T ss_pred             EEEEcCCCEEE-EEEEEEEEeCCCCCCC
Confidence            99999999996 5999999988877653

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.66  E-value=6.8e-16  Score=105.83  Aligned_cols=95  Identities=22%  Similarity=0.309  Sum_probs=68.2

Q ss_pred             cCCEEEeC-CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccC---Cc-------cEEEecCCcEEEEEeecCCC
Q psy18191        130 RVPRITEH-PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEI---GS-------HRILLPAGSLFFLSLVHGKK  198 (238)
Q Consensus       130 ~~P~i~~~-~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~---~~-------~~~~~~~~~l~~~~vi~~v~  198 (238)
                      .+|.|... |.++++.+|+++.|.|.+.|.|.|.+.|++++.......   ..       .........-...+.|..+.
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            46888765 788999999999999999999999999998764322110   00       01111112222333478889


Q ss_pred             CCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        199 DTDSGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       199 ~~d~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      .+|+|.|+|.|.|.+|... ..++|.|
T Consensus        83 ~~D~G~Y~C~a~N~~G~~~-~~~~L~V  108 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGISF-HSAWLTV  108 (109)
T ss_dssp             GGGCEEEEEEEECSSCEEE-EEEEEEE
T ss_pred             HHHCeEEEEEEEECCCEEE-EEEEEEE
Confidence            9999999999999999997 5999987

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=2.8e-16  Score=103.90  Aligned_cols=81  Identities=22%  Similarity=0.312  Sum_probs=66.3

Q ss_pred             CCCceEEeCCCcEEEEEEEe-eeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCc
Q psy18191        137 HPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGF  215 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~  215 (238)
                      .|....+.+|+++.|.|.+. |.|.|.+.|++++..+...   . ....++.|.    |+.+..+|+|.|+|.|.|..|.
T Consensus         8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~---~-~~~~~~~L~----i~~v~~~d~G~Y~C~a~N~~G~   79 (89)
T d1gl4b_           8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS---R-AMDFNGILT----IRNVQPSDAGTYVCTGSNMFAM   79 (89)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT---T-EEEETTEEE----ECSCCGGGCEEEEEEEECSSCE
T ss_pred             CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecc---c-cEeeceEEE----EecCCcccCEEEEEEEEECCCE
Confidence            46778899999999999997 6788999999998776642   2 233466665    5666999999999999999999


Q ss_pred             eeEEEEEEEEc
Q psy18191        216 ARSKNATLDVA  226 (238)
Q Consensus       216 ~~s~~~~L~V~  226 (238)
                      .. ..+.|.|+
T Consensus        80 ~~-~~~~l~V~   89 (89)
T d1gl4b_          80 DQ-GTATLHVQ   89 (89)
T ss_dssp             EE-EEEEEEEC
T ss_pred             EE-EEEEEEEC
Confidence            96 58999884

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.4e-17  Score=107.13  Aligned_cols=81  Identities=28%  Similarity=0.447  Sum_probs=64.8

Q ss_pred             CCEEEe--CCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        131 VPRITE--HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       131 ~P~i~~--~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      +|.|..  .|.+.++.+|+.+.|.|.+.|.|.|.++|+++|..+...          +.      +..++.+|+|.|.|.
T Consensus         2 ~P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~----------~~------~~~v~~~d~G~Y~C~   65 (84)
T d2oz4a3           2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI----------GE------SVTVTRDLEGTYLCR   65 (84)
T ss_dssp             EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT----------TS------CEECCGGGCEEEEEE
T ss_pred             CCceeecCCCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee----------ee------eeccccCCCCEEEEE
Confidence            355532  256789999999999999999999999999998766531          11      122388999999999


Q ss_pred             EEeCCCceeEEEEEEEEccC
Q psy18191        209 ARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~~~  228 (238)
                      |.|..|+.. ..+.|.|..+
T Consensus        66 A~N~~G~~~-~~~~l~V~~P   84 (84)
T d2oz4a3          66 ARSTQGEVT-REVTVNVLSP   84 (84)
T ss_dssp             EEETTEEEE-EEEEEEEECC
T ss_pred             EEcCCCEEE-EEEEEEEECC
Confidence            999999986 5999999754

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=4.4e-16  Score=104.53  Aligned_cols=93  Identities=20%  Similarity=0.308  Sum_probs=72.4

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .+|.+..  .+..+.+|+++.|.|.+.+ |.+.+.|+++|..+... .........+.|.    |..++.+|.|.|+|.|
T Consensus         4 ~~P~i~~--~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~-~~~~~~~~~~~L~----I~~v~~~d~G~Y~C~a   75 (96)
T d1l6za2           4 TQPFLQV--TNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLT-ERMTLSQNNSILR----IDPIKREDAGEYQCEI   75 (96)
T ss_dssp             CCCCEEC--SCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCC-TTEEEETTTTEEE----ECSCCGGGCEEEEEEE
T ss_pred             CCCeEEc--CceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccc-cceeccCCceEEE----EeccchhhceEEEEEE
Confidence            4566653  5678899999999999866 56899999999998753 2333333344554    5667999999999999


Q ss_pred             EeCCCceeEEEEEEEEccCCC
Q psy18191        210 RNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      .|..|...+..+.|.|..+|+
T Consensus        76 ~N~~g~~~S~~~~L~V~~~Ps   96 (96)
T d1l6za2          76 SNPVSVRRSNSIKLDIIFDPS   96 (96)
T ss_dssp             ESSSCCEECCCCEEEECCSCC
T ss_pred             EeCCCCeEEEeEEEEEEcCCC
Confidence            999999877789999987764

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2e-15  Score=102.05  Aligned_cols=95  Identities=22%  Similarity=0.310  Sum_probs=69.8

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC-EEEEEeCCEEee----ccCCccEEEecCCcEEEEEeecCCC-CCCCe
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVS----AEIGSHRILLPAGSLFFLSLVHGKK-DTDSG  203 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p-~i~W~~~g~~l~----~~~~~~~~~~~~~~l~~~~vi~~v~-~~d~G  203 (238)
                      .||.|...+.+..+.+|+.+.|.|.+.|.|.| .+.|++++....    ............+....+ .|..+. ..|+|
T Consensus         1 GPP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~I~~v~~~~D~G   79 (101)
T d3b5ha1           1 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSEL-HIENLNMEADPG   79 (101)
T ss_dssp             CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEE-EECSCCTTTSSE
T ss_pred             CCceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEE-EEeccccccCCE
Confidence            48899888888999999999999999999988 799998753222    111122222223333222 367777 57999


Q ss_pred             EEEEEEEeCCCceeEEEEEEEEc
Q psy18191        204 VYWCVARNELGFARSKNATLDVA  226 (238)
Q Consensus       204 ~Y~C~a~N~~G~~~s~~~~L~V~  226 (238)
                      .|+|.|.|.+|... ..+.|.|.
T Consensus        80 ~Y~C~A~N~~G~~~-~~~~L~Vr  101 (101)
T d3b5ha1          80 QYRCNGTSSKGSDQ-AIITLRVR  101 (101)
T ss_dssp             EEEEEEEETTEEEE-EEEEEEEC
T ss_pred             EEEEEEEECCCEEE-EEEEEEEC
Confidence            99999999999996 58999883

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=3.1e-15  Score=100.43  Aligned_cols=92  Identities=16%  Similarity=0.321  Sum_probs=66.6

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCC-CEEEEEe-CCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPE-PRIEWYK-DGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~-p~i~W~~-~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      +...|....+..|+++.|.|.+.|.|+ |.+.|++ +|..+.............+... .+.|..++.+|+|.|+|.|.|
T Consensus         3 V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~-~L~I~~~~~~D~G~Y~C~a~N   81 (97)
T d1epfa1           3 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS-TLTIYNANIDDAGIYKCVVTA   81 (97)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEE-EEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcce-EEEcccCchhhceEEEEEEEe
Confidence            344567788999999999999999985 7999998 5565554322222222222221 223788899999999999999


Q ss_pred             CCCceeEEEEEEEEc
Q psy18191        212 ELGFARSKNATLDVA  226 (238)
Q Consensus       212 ~~G~~~s~~~~L~V~  226 (238)
                      ..|...+.++.|.|.
T Consensus        82 ~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          82 EDGTQSEATVNVKIF   96 (97)
T ss_dssp             TTTEEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEEE
Confidence            999875457888874

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.2e-15  Score=102.70  Aligned_cols=96  Identities=16%  Similarity=0.231  Sum_probs=72.4

Q ss_pred             CEEEeCCCceEEeCCCcEEEEEEEeeeC---CCEEEEEeCCEEeeccCCccEEE------ecCCcEEEEEeecCCCCCCC
Q psy18191        132 PRITEHPASAVVPRHEPTTLNCKADGYP---EPRIEWYKDGSLVSAEIGSHRIL------LPAGSLFFLSLVHGKKDTDS  202 (238)
Q Consensus       132 P~i~~~~~~~~~~~G~~~~L~C~~~g~P---~p~i~W~~~g~~l~~~~~~~~~~------~~~~~l~~~~vi~~v~~~d~  202 (238)
                      |.|...|.++.+..|+++.|.|.+.|.|   .|.+.|++++..........++.      .........+.|..++..|+
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   84 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT   84 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCC
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHC
Confidence            5677888999999999999999999999   68999999875443221211111      11222233344788899999


Q ss_pred             eEEEEEEEeCCCceeEEEEEEEEccC
Q psy18191        203 GVYWCVARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       203 G~Y~C~a~N~~G~~~s~~~~L~V~~~  228 (238)
                      |.|+|.|.|..|... ..+.|.|...
T Consensus        85 G~Y~C~a~N~~G~~~-~~~~L~V~~~  109 (110)
T d2avga1          85 GGYRCEVSTKDKFDC-SNFNLTVHEA  109 (110)
T ss_dssp             EEEEEEEEETTEEEE-EEEEEEEESC
T ss_pred             cEEEEEEEECCCeEE-EEEEEEEEec
Confidence            999999999999997 5999999764

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=9.9e-16  Score=105.85  Aligned_cols=100  Identities=22%  Similarity=0.284  Sum_probs=72.6

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeC---CCEEEEEeCCEEeeccCCc-c-E----EEecCCcEEEEEeecCCCCCCCeE
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYP---EPRIEWYKDGSLVSAEIGS-H-R----ILLPAGSLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P---~p~i~W~~~g~~l~~~~~~-~-~----~~~~~~~l~~~~vi~~v~~~d~G~  204 (238)
                      |+..|.++.+.+|+++.|.|.+.|.|   .|.+.|+|++......... . .    ...........+.|..+..+|+|.
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            34567889999999999999999998   5899999987443221111 1 1    111122222333478889999999


Q ss_pred             EEEEEEeCCCceeEEEEEEEEccCCCCCCC
Q psy18191        205 YWCVARNELGFARSKNATLDVAGKISTATD  234 (238)
Q Consensus       205 Y~C~a~N~~G~~~s~~~~L~V~~~~~~~~~  234 (238)
                      |+|.|.|..|... ..+.|.|..++..+.+
T Consensus        83 Y~C~a~N~~G~~~-~~~~L~V~~~~~~~p~  111 (113)
T d2dava1          83 YRCEVTYKDKFDS-CSFDLEVHESTGTTPN  111 (113)
T ss_dssp             EEEEEECSSCEEE-ECCEEEEECCCCSCCC
T ss_pred             EEEEEEeCCCEEE-EEEEEEEEcCCCcCCC
Confidence            9999999999996 5999999877665543

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.6e-15  Score=101.98  Aligned_cols=99  Identities=16%  Similarity=0.229  Sum_probs=72.2

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEE--ec-CCcEEEEEeecCCCCCCCeE
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRIL--LP-AGSLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~--~~-~~~l~~~~vi~~v~~~d~G~  204 (238)
                      |+.||.|+....   ...+....+.|.+.|.|.|.+.|+++|..|..+ ......  .. .......+.|..++.+|+|.
T Consensus         1 v~~pP~it~~~~---~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   76 (103)
T d1wwbx_           1 VHFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNES-KYICTKIHVTNHTEYHGCLQLDNPTHMNNGD   76 (103)
T ss_dssp             CCCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCC-SSEEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred             CccCCeeEEcCC---CccceeEEEEEEEEEeCCCEEEEEECCEEeeee-eeeeeeecccccccceEEEEECCCCHHhCce
Confidence            356788754322   235677789999999999999999999999754 222221  11 22222233477889999999


Q ss_pred             EEEEEEeCCCceeEEEEEEEEccCCCC
Q psy18191        205 YWCVARNELGFARSKNATLDVAGKIST  231 (238)
Q Consensus       205 Y~C~a~N~~G~~~s~~~~L~V~~~~~~  231 (238)
                      |+|.|.|.+|+.. ..+.|.|..+|+.
T Consensus        77 Y~C~a~N~~G~~~-~~~~v~V~~~P~i  102 (103)
T d1wwbx_          77 YTLIAKNEYGKDE-KQISAHFMGWPGI  102 (103)
T ss_dssp             EEEEEECSSCEEE-EEEEECCSCCCCC
T ss_pred             EEEEEeccCCEEE-EEEEEEEEeCCCC
Confidence            9999999999996 6999999888764

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.2e-17  Score=110.13  Aligned_cols=89  Identities=20%  Similarity=0.188  Sum_probs=69.3

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCe-EEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSG-VYWCVA  209 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G-~Y~C~a  209 (238)
                      .|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|++++..+...   .......+...+  .|..+..+|.| .|+|.|
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~---~~~~~~~~~~~L--~i~~~~~~d~G~~Y~C~a   76 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSAT---VMKSGGLPSLGL--TLANVTSDLNRKNVTCWA   76 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEE---ECCCCCSSEEEE--EEESCCSTTTTCCEEECC
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeee---eeeeeeccceeE--EEccccccccceEEEEEE
Confidence            588888888999999999999999999999999999998766532   111111222222  26677999999 699999


Q ss_pred             EeCCCceeEEEEEEEE
Q psy18191        210 RNELGFARSKNATLDV  225 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V  225 (238)
                      .|.+|... .++.|.|
T Consensus        77 ~N~~G~~~-~s~~l~V   91 (92)
T d2ifga1          77 ENDVGRAE-VSVQVNV   91 (92)
T ss_dssp             EETTEECC-EEECCCC
T ss_pred             EcCCCEEE-EEEEEEE
Confidence            99999997 4888776

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.2e-15  Score=103.88  Aligned_cols=94  Identities=18%  Similarity=0.303  Sum_probs=69.6

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeC-CCEEEEEeCCEEeeccCCcc-E-EEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYP-EPRIEWYKDGSLVSAEIGSH-R-ILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P-~p~i~W~~~g~~l~~~~~~~-~-~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      +...+...++..|+++.|.|.+.|.| .|.+.|+|++..+....... . ....+......+.|..+..+|+|.|+|.|.
T Consensus         6 fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~   85 (104)
T d2aw2a1           6 YIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSAN   85 (104)
T ss_dssp             CCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             EEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEE
Confidence            44456678899999999999999999 58999999887664332222 2 222223223334478889999999999999


Q ss_pred             eCCCceeEEEEEEEEcc
Q psy18191        211 NELGFARSKNATLDVAG  227 (238)
Q Consensus       211 N~~G~~~s~~~~L~V~~  227 (238)
                      |..|...++++.|.|.+
T Consensus        86 N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          86 FQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             ETTEEEECCCEEEEEEC
T ss_pred             cCCCeEEEEEEEEEEEE
Confidence            99998766688888864

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.2e-15  Score=102.29  Aligned_cols=92  Identities=21%  Similarity=0.198  Sum_probs=64.7

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEe---CCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK---DGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~---~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      .|.|. .+.++.+.+|+++.|.|.+.|.|.|.+.|++   ++..+..   ..............+.|..+..+|+|.|+|
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   77 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPL---KEIKVTSSRRFIASFNVVNTTKRDAGKYRC   77 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCE---EEEEEEETTEEEEEEEECSCCGGGCSEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecC---CceeEEEeecCceEEEECCCCHHHCeEEEE
Confidence            57886 4789999999999999999999988755432   2222221   111222222222223377889999999999


Q ss_pred             EEEeCCCceeEEEEEEEEc
Q psy18191        208 VARNELGFARSKNATLDVA  226 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V~  226 (238)
                      .|.|..|...+..+.|.|+
T Consensus        78 ~a~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          78 MIRTEGGVGISNYAELVVK   96 (96)
T ss_dssp             EEEETTEEEEEEEEEEEEC
T ss_pred             EEEeCCCeEEEEEEEEEEC
Confidence            9999999987656899884

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.5e-15  Score=107.13  Aligned_cols=94  Identities=24%  Similarity=0.339  Sum_probs=69.5

Q ss_pred             cCCEEEe-----CCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccC---------------------------C
Q psy18191        130 RVPRITE-----HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEI---------------------------G  177 (238)
Q Consensus       130 ~~P~i~~-----~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~---------------------------~  177 (238)
                      .||.|..     .++++.+.+|+++.|.|.+.|.|.|.+.|++++..+....                           .
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE   82 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence            5677642     3567899999999999999999999999999776554320                           0


Q ss_pred             -ccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191        178 -SHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA  226 (238)
Q Consensus       178 -~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~  226 (238)
                       ...+....+..  .+.|..+..+|+|.|+|.|.|.+|... ..+.|.|.
T Consensus        83 ~r~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~  129 (130)
T d1gxea_          83 GRVRVETTKDRS--IFTVEGAEKEDEGVYTVTVKNPVGEDQ-VNLTVKVI  129 (130)
T ss_dssp             SSCEEEEETTEE--EEECSCCCTTTCEEEEEEEECSSCEEE-EEEEEEEC
T ss_pred             ceEEEEECCCEE--EEEECcCChhcCEEEEEEEEECCCEEE-EEEEEEEE
Confidence             01111122222  234788899999999999999999996 59999885

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.9e-15  Score=99.22  Aligned_cols=80  Identities=14%  Similarity=0.174  Sum_probs=61.9

Q ss_pred             ceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEE
Q psy18191        140 SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSK  219 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~  219 (238)
                      ...+..|+++.|.|.+.|.|.|.+.|++++..+...  ........+.|    .|..+..+|+|.|+|.|.|..|... .
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~L----~I~~v~~~d~G~Y~C~a~N~~g~~~-~   82 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG--KVTNEGTTSTL----TMNPVSFGNEHSYLCTATCESRKLE-K   82 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSS--EEEEETTEEEE----EESSCCGGGCSEEEEEEEETTEEEE-E
T ss_pred             cEEEECCCEEEEEEeccCCCCceEEEEecCccceee--eeeeecCCcEE----EEecccccccceEEEEEEeCCCEEE-E
Confidence            456689999999999999999999999987665421  11111112223    3778899999999999999999996 6


Q ss_pred             EEEEEEc
Q psy18191        220 NATLDVA  226 (238)
Q Consensus       220 ~~~L~V~  226 (238)
                      .+.|.|.
T Consensus        83 ~~~v~V~   89 (90)
T d1vcaa2          83 GIQVEIY   89 (90)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999885

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=8e-16  Score=100.62  Aligned_cols=76  Identities=13%  Similarity=0.068  Sum_probs=63.1

Q ss_pred             ceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEE
Q psy18191        140 SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSK  219 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~  219 (238)
                      +..+.+|+++.|.|.+.|.|.|.+.|++++..+..         .+..+.    |..+..+|+|.|+|.|.|..|... .
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~---------~~~~l~----i~~v~~~DsG~Y~C~a~N~~g~~~-~   73 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ---------GGKTLS----VSQLELQDSGTWTCTVLQNQKKVE-F   73 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEE---------ESSEEE----ESSCCGGGCEEEEEEEEETTEEEE-E
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeeccccee---------eeeeee----eeecccccccEEEEEEEeCCCEEE-E
Confidence            45678999999999999999999999998765442         234444    567799999999999999999997 5


Q ss_pred             EEEEEEccCC
Q psy18191        220 NATLDVAGKI  229 (238)
Q Consensus       220 ~~~L~V~~~~  229 (238)
                      .+.|.|.+.+
T Consensus        74 ~~~v~V~~~~   83 (84)
T d2nxyb2          74 KIDIVVLAFQ   83 (84)
T ss_dssp             EEEECEECCC
T ss_pred             EEEEEEEecC
Confidence            9999997654

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.60  E-value=3.3e-15  Score=98.46  Aligned_cols=79  Identities=16%  Similarity=0.266  Sum_probs=63.4

Q ss_pred             CceEEeCCCcEEEEEEEeee-CCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        139 ASAVVPRHEPTTLNCKADGY-PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~-P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      ....+.+|+.+.|.|.+.+. |.+.+.|+|+|..+...       ..++.|.    |..++.+|+|.|.|.|.|..|...
T Consensus         8 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~-------~~~~~l~----i~~v~~~dsG~Y~C~a~n~~g~~~   76 (88)
T d2fcba2           8 PHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS-------RSDPNFS----IPQANHSHSGDYHCTGNIGYTLYS   76 (88)
T ss_dssp             SCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-------SSCCEEE----ETTCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCCeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc-------ccccccc----cCccCHHHCCeEEEEEEeCCCCEE
Confidence            34668899999999999654 66789999999887642       1233444    677799999999999999999876


Q ss_pred             EEEEEEEEccC
Q psy18191        218 SKNATLDVAGK  228 (238)
Q Consensus       218 s~~~~L~V~~~  228 (238)
                      |..+.|.|+++
T Consensus        77 S~~v~l~V~~P   87 (88)
T d2fcba2          77 SKPVTITVQAP   87 (88)
T ss_dssp             CCCEEEEECCC
T ss_pred             eeeEEEEEeCC
Confidence            67899999875

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.58  E-value=3.4e-15  Score=98.58  Aligned_cols=79  Identities=14%  Similarity=0.229  Sum_probs=63.2

Q ss_pred             CCceEEeCCCcEEEEEEEe-eeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        138 PASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      +....+.+|+++.|.|.+. +.|.+.+.|+|||..+...       ..++.+.    |..++.+|+|.|.|.|.|..|..
T Consensus         9 ~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~-------~~~~~l~----I~~v~~~dsG~Y~C~a~n~~~~~   77 (89)
T d1fnla2           9 APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-------HHNSDFH----IPKATLKDSGSYFCRGLVGSKNV   77 (89)
T ss_dssp             CSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-------EECCCEE----ESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCCCeEccCCeEEEEEEecCCCCCcEEEEEEccccccee-------ccccccE----ECccceeccceEEEEEEeCCCCe
Confidence            3456688999999999987 4566789999999887632       2245555    56669999999999999999987


Q ss_pred             eEEEEEEEEcc
Q psy18191        217 RSKNATLDVAG  227 (238)
Q Consensus       217 ~s~~~~L~V~~  227 (238)
                      .|..+.|.|++
T Consensus        78 ~S~~v~itV~E   88 (89)
T d1fnla2          78 SSETVNITITQ   88 (89)
T ss_dssp             ECCCEEEEEEC
T ss_pred             EEeeEEEEEEe
Confidence            77789999875

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.8e-15  Score=99.19  Aligned_cols=87  Identities=17%  Similarity=0.170  Sum_probs=65.1

Q ss_pred             CCEEEeCC-CceEEeCCCcEEEEEEEe-eeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        131 VPRITEHP-ASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       131 ~P~i~~~~-~~~~~~~G~~~~L~C~~~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      +|.+...| ....+.+|+++.|.|.+. |.|.|.+.|++.+.++..    .......+.|.    |..++.+|+|.|+|.
T Consensus         2 kP~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~----~~~~~~~~~L~----i~~v~~~D~G~Y~C~   73 (90)
T d1gsma1           2 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA----VQSDTGRSVLT----VRNASLSAAGTRVCV   73 (90)
T ss_dssp             CSEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC----EEEESSEEEEE----ECSCCGGGCEEEEEE
T ss_pred             cCcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee----eeccCceeeEE----cCccChhhCCcEEEE
Confidence            34444554 457788999999999985 889999999997765531    12222223333    677799999999999


Q ss_pred             EEeCCCceeEEEEEEEEc
Q psy18191        209 ARNELGFARSKNATLDVA  226 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V~  226 (238)
                      |.|..|..+ +++.|.|.
T Consensus        74 Asn~~g~~~-~s~~l~Vy   90 (90)
T d1gsma1          74 GSCGGRTFQ-HTVQLLVY   90 (90)
T ss_dssp             EEETTEEEE-EEEEEEEE
T ss_pred             EEeCCCcEE-EEEEEEEC
Confidence            999999986 69999873

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.4e-14  Score=97.74  Aligned_cols=93  Identities=16%  Similarity=0.161  Sum_probs=68.5

Q ss_pred             CCEEEeCCC-ceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEE---ec------CCcEEEEEeecCCCCC
Q psy18191        131 VPRITEHPA-SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRIL---LP------AGSLFFLSLVHGKKDT  200 (238)
Q Consensus       131 ~P~i~~~~~-~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~---~~------~~~l~~~~vi~~v~~~  200 (238)
                      +|.|..... .+.+..|+++.|.|.+.|.|.|.+.|+++|..+..........   ..      .......+.|..++.+
T Consensus         1 kP~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   80 (107)
T d1iray3           1 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR   80 (107)
T ss_dssp             CCEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred             CCCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchH
Confidence            477776544 3567789999999999999999999999999887542221111   10      1122334458888999


Q ss_pred             CCe-EEEEEEEeCCCceeEEEEEEE
Q psy18191        201 DSG-VYWCVARNELGFARSKNATLD  224 (238)
Q Consensus       201 d~G-~Y~C~a~N~~G~~~s~~~~L~  224 (238)
                      |.| .|+|.|.|.+|... ..+.|.
T Consensus        81 D~g~~Y~C~A~N~~G~~~-~~i~L~  104 (107)
T d1iray3          81 FYKHPFTCFAKNTHGIDA-AYIQLI  104 (107)
T ss_dssp             GGSSCEEEEEECSSCEEE-EEEEEE
T ss_pred             HCCcEEEEEEEeCCCeEE-EEEEEE
Confidence            999 59999999999996 477776

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=4.2e-15  Score=102.07  Aligned_cols=83  Identities=29%  Similarity=0.466  Sum_probs=59.7

Q ss_pred             eEEeCCCcEEEEEEEe-eeCCCEEEEEeCCEEeeccCCcc--------E-EEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        141 AVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSH--------R-ILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~~-g~P~p~i~W~~~g~~l~~~~~~~--------~-~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      ..+.+|+++.|.|.+. |.|.|.++|++++..+.......        . .....+.|.    |..++.+|+|.|+|.|.
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----I~~v~~~D~G~Y~C~a~   87 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLI----FDPVTAFDSGEYYCQAQ   87 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEE----ESSCCGGGCEEEEEEEE
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceE----ECCCCccCCEEEEEEEE
Confidence            4678999999999984 89999999999998876431111        0 111122333    67779999999999999


Q ss_pred             eCCCcee-EEEEEEEEcc
Q psy18191        211 NELGFAR-SKNATLDVAG  227 (238)
Q Consensus       211 N~~G~~~-s~~~~L~V~~  227 (238)
                      |.+|... +..++|.|..
T Consensus        88 N~~G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          88 NGYGTAMRSEAAHMDAVE  105 (110)
T ss_dssp             CSSSCCEECCCEEEEEES
T ss_pred             ECCCcEEEEEEEEEEEEe
Confidence            9999874 2356677654

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.3e-14  Score=95.77  Aligned_cols=80  Identities=20%  Similarity=0.257  Sum_probs=64.1

Q ss_pred             CceEEeCCCcEEEEEEEeee-CCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        139 ASAVVPRHEPTTLNCKADGY-PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~-P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      ....+.+|+.+.|.|.+.+. |.+.+.|+|||..+....       ..+.+.    |..++.+|+|.|.|.|.|..|...
T Consensus         8 p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~-------~~~~l~----i~~~~~~dsG~Y~C~a~n~~~~~~   76 (89)
T d1f2qa2           8 SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-------ENHNIS----ITNATVEDSGTYYCTGKVWQLDYE   76 (89)
T ss_dssp             SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-------CSSEEE----ESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc-------ccceEE----EeeeeeecCcEEEEEEEeCCCCeE
Confidence            45667899999999999765 556899999999886421       123343    667799999999999999999887


Q ss_pred             EEEEEEEEccCC
Q psy18191        218 SKNATLDVAGKI  229 (238)
Q Consensus       218 s~~~~L~V~~~~  229 (238)
                      |..+.|.|..+|
T Consensus        77 S~~v~i~V~~~P   88 (89)
T d1f2qa2          77 SEPLNITVIKAP   88 (89)
T ss_dssp             CCCEEEEEECSC
T ss_pred             eeeEEEEEEeCC
Confidence            788999998775

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.9e-14  Score=97.33  Aligned_cols=91  Identities=18%  Similarity=0.178  Sum_probs=65.6

Q ss_pred             CCceEEeCCCcEEEE---EEEeeeCCCEEEEEeCCEEeeccCCccEEEecC-----CcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        138 PASAVVPRHEPTTLN---CKADGYPEPRIEWYKDGSLVSAEIGSHRILLPA-----GSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~---C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~-----~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      |.++.+..|....+.   |.+.|.|.|.+.|+++|..|... .........     ......+.|..+..+|+|.|+|.|
T Consensus         4 p~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A   82 (107)
T d1he7a_           4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNET-SFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLA   82 (107)
T ss_dssp             CCCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCC-SSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEE
T ss_pred             CCEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCc-cceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEE
Confidence            344555566666655   48899999999999999998754 222222211     112233347888999999999999


Q ss_pred             EeCCCceeEEEEEEEEccCCC
Q psy18191        210 RNELGFARSKNATLDVAGKIS  230 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V~~~~~  230 (238)
                      .|.+|.+. ..+.|.|..+|-
T Consensus        83 ~N~~G~~~-~~i~v~v~~~P~  102 (107)
T d1he7a_          83 ANPFGQAS-ASIMAAFMDNPF  102 (107)
T ss_dssp             EETTEEEE-EEEEECCCSCTT
T ss_pred             EeCCCEEE-EEEEEEEEcCCC
Confidence            99999997 599999987773

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2e-15  Score=100.52  Aligned_cols=81  Identities=16%  Similarity=0.183  Sum_probs=64.4

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      ..+|.+...+..+.+.+|+++.|.|.+.|.|+ +.|+|+|++..+..  ........+++|.    |..+..+|+|.|+|
T Consensus         4 ~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~--~~~~~~~~~~~L~----I~~v~~~D~G~Y~C   77 (93)
T d1n26a1           4 RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGS--HPSRWAGMGRRLL----LRSVQLHDSGNYSC   77 (93)
T ss_dssp             SCCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSC--CCEEEEEESSEEE----ECSCCGGGCEEEEE
T ss_pred             CCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccc--eeeEEecCCCEEE----ECCCChhcCEEEEE
Confidence            46788888888899999999999999988775 58999999988864  2334444566665    56669999999999


Q ss_pred             EEEeCCCc
Q psy18191        208 VARNELGF  215 (238)
Q Consensus       208 ~a~N~~G~  215 (238)
                      .|.|..+.
T Consensus        78 ~a~n~~~~   85 (93)
T d1n26a1          78 YRAGRPAG   85 (93)
T ss_dssp             ESSSSCSC
T ss_pred             EECCcccc
Confidence            99886543

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=1.8e-14  Score=97.52  Aligned_cols=90  Identities=20%  Similarity=0.385  Sum_probs=65.3

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeecc---------CCccEEEecCCcEEEEEeecCCCCCC
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE---------IGSHRILLPAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~---------~~~~~~~~~~~~l~~~~vi~~v~~~d  201 (238)
                      +|.+...+..+.+.+|+++.|.|.+.|.|.|.+.|++++..+...         ....+....+++|.    |.++..+|
T Consensus         1 k~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~----I~~v~~~D   76 (102)
T d1f97a1           1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGIT----FSSVTRKD   76 (102)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEE----ESCCCGGG
T ss_pred             CCCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEE----EeECCccC
Confidence            466777777899999999999999999999999999854322110         00111222344444    67779999


Q ss_pred             CeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        202 SGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       202 ~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      +|.|.|.|.|..|... ..+.|.|
T Consensus        77 ~G~Y~C~a~n~~g~~~-~~~~v~v   99 (102)
T d1f97a1          77 NGEYTCMVSEEGGQNY-GEVSIHL   99 (102)
T ss_dssp             CEEEEEEEEETTSSSE-EEEEEEE
T ss_pred             CEEEEEEEEECCCCEE-EEEEEEE
Confidence            9999999999999985 3665554

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.1e-14  Score=98.95  Aligned_cols=90  Identities=19%  Similarity=0.422  Sum_probs=65.6

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccC---------CccEEEecCCcEEEEEeecCCCCCC
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEI---------GSHRILLPAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~---------~~~~~~~~~~~l~~~~vi~~v~~~d  201 (238)
                      .+.+...+..+.+.+|+++.|.|.+.|.|.|.+.|++++..+....         ...+....++.|.    |..+..+|
T Consensus         4 ~v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~----I~~v~~~D   79 (105)
T d1nbqa1           4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGIT----FKSVTRED   79 (105)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEE----CSCCCTTS
T ss_pred             ceEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEE----Eecccccc
Confidence            4455556677889999999999999999999999999765443210         0111122234444    67779999


Q ss_pred             CeEEEEEEEeCCCceeEEEEEEEE
Q psy18191        202 SGVYWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       202 ~G~Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      +|.|+|.|.|..|... ..+.|.|
T Consensus        80 ~G~Y~C~a~n~~G~~~-~~~~v~v  102 (105)
T d1nbqa1          80 TGTYTCMVSEEGGNSY-GEVKVKL  102 (105)
T ss_dssp             CSEEEEEEEETTSSCE-ECCEEEC
T ss_pred             eeeEEEEEEECCCCEE-EEEEEEE
Confidence            9999999999999996 4666654

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.3e-15  Score=102.78  Aligned_cols=102  Identities=16%  Similarity=0.224  Sum_probs=75.2

Q ss_pred             CccCCEEEeCCCceEEeCCCcEEEEEEEeeeC-CCEEEEEeCCEEeeccCCccE-EE--ecCCcEEEEEeecCCCCCC-C
Q psy18191        128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYP-EPRIEWYKDGSLVSAEIGSHR-IL--LPAGSLFFLSLVHGKKDTD-S  202 (238)
Q Consensus       128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P-~p~i~W~~~g~~l~~~~~~~~-~~--~~~~~l~~~~vi~~v~~~d-~  202 (238)
                      |..||.|.. +....+.+|+.+.|.|.+.|.| .+.+.|++++..+........ +.  .........+.|..+..+| +
T Consensus         4 V~~Pp~i~~-~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~   82 (115)
T d2crya1           4 VNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQ   82 (115)
T ss_dssp             CCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHH
T ss_pred             EecCCEEec-CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCC
Confidence            668888865 4567788999999999999864 568999999988865422221 11  1222223334578889999 6


Q ss_pred             eEEEEEEEeCCCceeEEEEEEEEccCCCC
Q psy18191        203 GVYWCVARNELGFARSKNATLDVAGKIST  231 (238)
Q Consensus       203 G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~  231 (238)
                      |.|+|.|.|.+|++. ..+.|.|.+....
T Consensus        83 G~Y~C~A~N~~G~~~-~~~~L~V~~~~~~  110 (115)
T d2crya1          83 TIYNCTAWNSFGSDT-EIIRLKEQGSEMS  110 (115)
T ss_dssp             SCEEEEEECSSCEEE-EEECCCCSCSSCC
T ss_pred             eEEEEEEEECCCeEE-EEEEEEEECCCCC
Confidence            999999999999996 6999999876543

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.1e-14  Score=93.43  Aligned_cols=88  Identities=14%  Similarity=0.179  Sum_probs=64.2

Q ss_pred             CCEEEeCC-CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        131 VPRITEHP-ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       131 ~P~i~~~~-~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      +|.|.... ....+.+|+++.|.|.+ +.|.|.+.|+++|..|..+.....+...++...+  .|..+...|+|.|+|.|
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v-~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L--~I~~~~~~D~G~Y~c~a   81 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTL--TISQCSLADDAAYQCVV   81 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEE--EECSCSSSSCEEEEEEE
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEE-CCCCceEEEEEcCccceeeeeeEeeeccCCeEEe--ecCCCCceecEEEEEEE
Confidence            45555443 34678999999999998 4589999999999999765333444444444333  37888999999999999


Q ss_pred             EeCCCceeEEEEEEEEc
Q psy18191        210 RNELGFARSKNATLDVA  226 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V~  226 (238)
                      .|.    . .++.|.|.
T Consensus        82 ~n~----~-~s~~l~V~   93 (94)
T d1pd6a_          82 GGE----K-CSTELFVK   93 (94)
T ss_dssp             TTE----E-ECCEEEEE
T ss_pred             eeE----E-EEEEEEEE
Confidence            773    3 36677775

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.1e-14  Score=93.02  Aligned_cols=86  Identities=19%  Similarity=0.324  Sum_probs=62.2

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      +..+.++.+.+|+++.|.|.+ +.|.|.+.|++++..+..+.........++.... +.|..+..+|+|.|+|.|.|.  
T Consensus         4 ~~~l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~-L~I~~v~~~D~G~Y~C~a~n~--   79 (90)
T d1x44a1           4 TKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI-LIIEGATKADAAEYSVMTTGG--   79 (90)
T ss_dssp             SBCCCCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCSTTCSEEEEEETTEEE-EEEEEECTTTCSEEEEEETTE--
T ss_pred             EcCCCCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCCCCccEEEEEeCCccE-EEECccccccCEEEEEEEecc--
Confidence            345678999999999999998 5688999999999988764333333333332211 125566999999999999773  


Q ss_pred             ceeEEEEEEEEcc
Q psy18191        215 FARSKNATLDVAG  227 (238)
Q Consensus       215 ~~~s~~~~L~V~~  227 (238)
                        .+ .+.|.|+.
T Consensus        80 --~~-~a~l~V~~   89 (90)
T d1x44a1          80 --QS-SAKLSVDL   89 (90)
T ss_dssp             --EE-EEEEEEEC
T ss_pred             --eE-EEEEEEEE
Confidence              33 77888865

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.2e-15  Score=102.45  Aligned_cols=89  Identities=25%  Similarity=0.436  Sum_probs=63.0

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEE-eeeCCCEEEEEeCCEEeeccCCccEE--------EecCCcEEEEEeecCCCCCC
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRI--------LLPAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~--------~~~~~~l~~~~vi~~v~~~d  201 (238)
                      ||.+........+.+|+.+.|.|.+ .|.|.|.+.|++++..+.........        ....+.|.    |..+..+|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~----I~~v~~~D   77 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELV----FDPLSASD   77 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEE----ESSCCGGG
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceE----ECCCCccc
Confidence            4555444455678899999999998 58999999999999887653111110        11123443    66779999


Q ss_pred             CeEEEEEEEeCCCceeEEEEEEE
Q psy18191        202 SGVYWCVARNELGFARSKNATLD  224 (238)
Q Consensus       202 ~G~Y~C~a~N~~G~~~s~~~~L~  224 (238)
                      +|.|+|.|.|.+|+... ++.|.
T Consensus        78 ~G~Y~C~a~N~~G~~~~-s~~v~   99 (104)
T d1nbqa2          78 TGEYSCEARNGYGTPMT-SNAVR   99 (104)
T ss_dssp             CCCEEEEEECSSSCCEE-CCCBC
T ss_pred             CcEEEEEEEECCCceEE-EEEEE
Confidence            99999999999999853 44433

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.7e-14  Score=95.77  Aligned_cols=72  Identities=19%  Similarity=0.369  Sum_probs=59.1

Q ss_pred             ceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191        140 SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR  217 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~  217 (238)
                      ...+.+|+++.|.|.+.| |.|.+.|+++|..+... ........++.|.    |.++..+|+|.|+|.|.|..|...
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~-~~~~~~~~~~~L~----I~~v~~~DsG~Y~C~A~n~~g~~~   77 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAE-SPKYGLMGRKNLL----IFNLSEGDSGVYQCLSEERVKNKT   77 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCC-SSSBCCTTTTCEE----ECSCCGGGCEEEEEEEEEECSSSE
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceee-eeeeecceeeEEE----ECCCCHHHCcEEEEEEEEcCCCEE
Confidence            467899999999999998 77899999999988764 3334445667776    566699999999999999998764

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.48  E-value=4.1e-14  Score=92.48  Aligned_cols=80  Identities=23%  Similarity=0.433  Sum_probs=64.7

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCC-EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      +|.+...|....+.+|+++.|.|.+.+.|.+ .+.|++||..+...         ++.+.+..+    ..+|+|.|+|.|
T Consensus         4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~---------~~~l~i~~v----~~~dsG~Y~C~a   70 (85)
T d2fcba1           4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH---------TQPSYRFKA----NNNDSGEYTCQT   70 (85)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC---------CSSEEEEEC----CGGGCEEEEEEC
T ss_pred             CCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccc---------ccceEEeec----cccCCcEEEEEC
Confidence            5678888888899999999999999998876 58899999887642         456665555    999999999999


Q ss_pred             EeCCCceeEEEEEEEEc
Q psy18191        210 RNELGFARSKNATLDVA  226 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V~  226 (238)
                      .|..++.   .++|.|.
T Consensus        71 ~ns~~S~---~v~l~V~   84 (85)
T d2fcba1          71 GQTSLSD---PVHLTVL   84 (85)
T ss_dssp             TTSBCCC---CEEEEEE
T ss_pred             CCCcccc---cEEEEEE
Confidence            9876654   5677764

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.47  E-value=2.1e-14  Score=97.70  Aligned_cols=76  Identities=17%  Similarity=0.365  Sum_probs=60.8

Q ss_pred             CCceEEeCCCcEEEEEEE-eeeCCCEEEEEeCCEEeeccCCccEEE-ecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCc
Q psy18191        138 PASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRIL-LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGF  215 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~  215 (238)
                      ...+.+.+|+.+.|.|.+ .|.|.|.+.|+++|..+.......+.. ..++.|.    |..++.+|+|.|+|.|.|..|.
T Consensus        11 ~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~----I~~v~~~D~G~Y~C~a~N~~g~   86 (105)
T d1cs6a2          11 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLY----IAKTEASDLGNYSCFATSHIDF   86 (105)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEE----ESSCCGGGCEEEEEEEEEEETT
T ss_pred             CCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEe----ecccccccCcEEEEEEEECCCC
Confidence            356789999999999997 799999999999998765433333433 3456665    5666999999999999999998


Q ss_pred             ee
Q psy18191        216 AR  217 (238)
Q Consensus       216 ~~  217 (238)
                      ..
T Consensus        87 ~~   88 (105)
T d1cs6a2          87 IT   88 (105)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.47  E-value=5.1e-14  Score=91.80  Aligned_cols=81  Identities=26%  Similarity=0.421  Sum_probs=63.9

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCE-EEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPR-IEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      ..+|.+...|...++.+|++++|.|.+.|.|.|. +.|++++..+..+         ...|.    |..++.+|+|.|+|
T Consensus         3 lPkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~----i~~~~~~d~G~Y~C   69 (84)
T d1fnla1           3 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ---------ASSYF----IDAATVNDSGEYRC   69 (84)
T ss_dssp             CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS---------CSEEE----ESSCCGGGCEEEEE
T ss_pred             CCCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec---------ceeeE----ecCCcccCCEEEEE
Confidence            4578888888889999999999999999999886 6678888776532         33443    66779999999999


Q ss_pred             EEEeCCCceeEEEEEEEE
Q psy18191        208 VARNELGFARSKNATLDV  225 (238)
Q Consensus       208 ~a~N~~G~~~s~~~~L~V  225 (238)
                      .|.|..++.   .++|.|
T Consensus        70 ~a~~s~~S~---~v~L~V   84 (84)
T d1fnla1          70 QTNLSTLSD---PVQLEV   84 (84)
T ss_dssp             ECSSSCCCC---CEEEEE
T ss_pred             EccCCCccc---cEEEEC
Confidence            998876544   566665

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.4e-13  Score=93.06  Aligned_cols=83  Identities=18%  Similarity=0.256  Sum_probs=63.8

Q ss_pred             eEEeCCCcEEEEE------EEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        141 AVVPRHEPTTLNC------KADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       141 ~~~~~G~~~~L~C------~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      ..+..|+...|.|      .+.|+|.|.+.|++||.+|..+  ..+....++.|.    |..+..+|+|.|+|.|.|..|
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~--~~~~~~~~~~L~----I~~v~~~D~G~Y~C~a~n~~~   82 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD--NIHFSGVKDRLI----VMNVAEKHRGNYTCHASYTYL   82 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCC--SSSEEEETTEEE----ESSCCGGGCEEEEEEEEEEET
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCC--CcEEEecCCEEE----EcccccccCcEEEEEEEECcC
Confidence            5678899999999      6789999999999999999753  334445566665    667799999999999999887


Q ss_pred             cee---EEEEEEEEccCC
Q psy18191        215 FAR---SKNATLDVAGKI  229 (238)
Q Consensus       215 ~~~---s~~~~L~V~~~~  229 (238)
                      ...   +..+.|.|....
T Consensus        83 g~~~~vt~~i~~~v~~~~  100 (103)
T d1iray2          83 GKQYPITRVIEFITLEEN  100 (103)
T ss_dssp             TEEEEEEEEEEEEEECCC
T ss_pred             CEEEEEEEEEEEEECCCC
Confidence            532   245556665543

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.6e-13  Score=88.94  Aligned_cols=92  Identities=14%  Similarity=0.188  Sum_probs=67.6

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEee-eCCC--EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADG-YPEP--RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g-~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      .||.+...+....+.+|+.++|.|.+.| .|.|  .+.|++++..+...      ............|..+..+|.|.|+
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~------~~~~~~~~s~l~i~~~~~dd~g~yt   76 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKRE------PAVGEPAEVTTTVLVRRDHHGAQFS   76 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEE------ECCTTTEEEEEEEECCSSCSSCEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccc------ccccccceEEEEEeeehhHCCCEEE
Confidence            5788888888888999999999999986 5655  57899999988642      1111222222235666888999999


Q ss_pred             EEEEeCCCceeEEEEEEEEccC
Q psy18191        207 CVARNELGFARSKNATLDVAGK  228 (238)
Q Consensus       207 C~a~N~~G~~~s~~~~L~V~~~  228 (238)
                      |.|+|.+|+.. ..+.+.+..+
T Consensus        77 C~A~n~~g~~~-~~~~~~~s~p   97 (103)
T d1iama1          77 CRTELDLRPQG-LELFENTSAP   97 (103)
T ss_dssp             EEEEEECGGGT-SCEEEEECCC
T ss_pred             EEEEeCCCCcc-CeEeeeEcCC
Confidence            99999999875 3667776543

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.43  E-value=2e-13  Score=93.61  Aligned_cols=82  Identities=23%  Similarity=0.328  Sum_probs=61.4

Q ss_pred             eEEeCCCcEEEEEEE-eeeCCCEEEEEeCCEEeeccC-----CccEEEecCCcEEEEEeecCCCCCCCe---EEEEEEEe
Q psy18191        141 AVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEI-----GSHRILLPAGSLFFLSLVHGKKDTDSG---VYWCVARN  211 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~-----~~~~~~~~~~~l~~~~vi~~v~~~d~G---~Y~C~a~N  211 (238)
                      .++.+|+++.|.|.+ .|.|.|.+.|++++..+....     ........++.|.+..+    +.+|+|   .|.|.|.|
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v----~~~D~gd~g~Y~C~A~N   87 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIV----TKEDVSDIYKYVCTAKN   87 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEE----CGGGCCSSEEEEEEEEC
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeee----EeeccCCceEEEEEEEe
Confidence            456789999999996 899999999999876654321     12233456788988877    777766   79999999


Q ss_pred             CCCceeEEEEEEEEcc
Q psy18191        212 ELGFARSKNATLDVAG  227 (238)
Q Consensus       212 ~~G~~~s~~~~L~V~~  227 (238)
                      .+|.... .+.+.+..
T Consensus        88 ~~g~~~~-~~~~~~i~  102 (111)
T d1biha2          88 AAVDEEV-VLVEYEIK  102 (111)
T ss_dssp             TTCSSCE-EEEEEEEC
T ss_pred             CCCCceE-EEEEEEeC
Confidence            9999964 55444443

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.7e-14  Score=92.06  Aligned_cols=80  Identities=26%  Similarity=0.434  Sum_probs=59.9

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCE-EEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPR-IEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      +|.|...|....+.+|+.+.|.|.+.|.|.|. +.|++++..+...         +..|.    |..++.+|+|.|.|.|
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~----i~~v~~~d~G~Y~C~a   67 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET---------NSSLN----IVNAKFEDSGEYKCQH   67 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC---------SSEEE----ECSCCGGGCEEEEEEC
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc---------cceeE----ECCCChhhCCcEEEEe
Confidence            57788888888899999999999999999875 6678888776532         33444    5667999999999999


Q ss_pred             EeCCCceeEEEEEEEEc
Q psy18191        210 RNELGFARSKNATLDVA  226 (238)
Q Consensus       210 ~N~~G~~~s~~~~L~V~  226 (238)
                      .|..++.   .+.|.|.
T Consensus        68 ~~s~~S~---~v~l~V~   81 (82)
T d1f2qa1          68 QQVNESE---PVYLEVF   81 (82)
T ss_dssp             TTSSCCC---CEEEEEE
T ss_pred             cCCCCcc---cEEEEEE
Confidence            9876544   5677764

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.41  E-value=2.3e-14  Score=94.52  Aligned_cols=85  Identities=16%  Similarity=0.144  Sum_probs=63.2

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~  213 (238)
                      |..++.++.+.+|+++.|.|.+ +.|.|.+.|++||..+..+ ....+...++...  ..|..+..+|+|.|+|.|.|..
T Consensus         4 i~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~-~~~~~~~~~~~~~--L~I~~~~~~D~G~Y~c~a~n~~   79 (89)
T d1tiua_           4 VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTAS-PDCEIIEDGKKHI--LILHNCQLGMTGEVSFQAANAK   79 (89)
T ss_dssp             CSBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSS-SSCEEEECSSCEE--EECCSCCSCCCSEECCBCSSCB
T ss_pred             EEcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccc-eeEEEEeeceeEE--EEEcCCChhcCEEEEEEECceE
Confidence            3345678999999999999997 6799999999999998764 3333433333322  2378889999999999987754


Q ss_pred             CceeEEEEEEEEcc
Q psy18191        214 GFARSKNATLDVAG  227 (238)
Q Consensus       214 G~~~s~~~~L~V~~  227 (238)
                      +     ++.|.|.+
T Consensus        80 ~-----sa~l~V~e   88 (89)
T d1tiua_          80 S-----AANLKVKE   88 (89)
T ss_dssp             C-----CEEEEEEC
T ss_pred             E-----EEEEEEEE
Confidence            3     56677754

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.1e-13  Score=90.03  Aligned_cols=87  Identities=25%  Similarity=0.329  Sum_probs=67.7

Q ss_pred             CCceEEeCCCcEEEEEEEe-eeCCCEEEEEeCCEEeeccC-CccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCc
Q psy18191        138 PASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEI-GSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGF  215 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~-g~P~p~i~W~~~g~~l~~~~-~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~  215 (238)
                      |..+...+|+.+.|.|.+. +.|.+.|.|+++|..+.... ...++...++.|.    |..++.+|+|.|+|.|.|..|.
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~----I~~v~~~D~G~Y~C~a~N~~g~   84 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLW----FVPAKVEDSGHYYCVVRNSSYC   84 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEE----ETTCCGGGCEEEEEEEEETTEE
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEE----eccceecCCEEEEEEEECCCCe
Confidence            4567788999999999874 78999999999986554321 2223444566665    6677999999999999999999


Q ss_pred             eeEEEEEEEEccCC
Q psy18191        216 ARSKNATLDVAGKI  229 (238)
Q Consensus       216 ~~s~~~~L~V~~~~  229 (238)
                      .. ..+.|.|..+.
T Consensus        85 ~~-~~~~L~V~~~~   97 (101)
T d1iray1          85 LR-IKISAKFVENE   97 (101)
T ss_dssp             EE-EEEEEEEECCC
T ss_pred             EE-EEEEEEEEeCC
Confidence            97 49999997653

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=6.7e-13  Score=90.23  Aligned_cols=88  Identities=9%  Similarity=0.041  Sum_probs=57.5

Q ss_pred             CCceEEeCCCcEEEEEEEee-e--CCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191        138 PASAVVPRHEPTTLNCKADG-Y--PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG  214 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g-~--P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G  214 (238)
                      +....+.+|+.++|.|.+.| .  |.+.+.|++++..+....... .............+.....+|.|.|+|.|.|.+|
T Consensus         9 ~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~-~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~   87 (106)
T d1zxqa1           9 LQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGK-AAPAPQEATATFNSTADREDGHRNFSCLAVLDLM   87 (106)
T ss_dssp             EESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCS-STTCTTCEEEEEEEECCGGGGGCEEEEEEEEECG
T ss_pred             CCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccce-EeecccceeEEEEEeeehhcCCcEEEEEEEecCC
Confidence            34567889999999999976 4  455899999999987531111 1111222222222444466677899999999998


Q ss_pred             ceeEEEEEEEEcc
Q psy18191        215 FARSKNATLDVAG  227 (238)
Q Consensus       215 ~~~s~~~~L~V~~  227 (238)
                      ... ..+.+.+..
T Consensus        88 ~~~-~~~~~~~s~   99 (106)
T d1zxqa1          88 SRG-GNIFHKHSA   99 (106)
T ss_dssp             GGT-CCEEEEECC
T ss_pred             CCC-CeeEecccC
Confidence            764 355666543

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.5e-10  Score=76.21  Aligned_cols=78  Identities=19%  Similarity=0.159  Sum_probs=55.4

Q ss_pred             ceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCC---------ccEEEe--cCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        140 SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---------SHRILL--PAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~---------~~~~~~--~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      .+....|++++|.|.. +.|.+.+.|++++..+.....         ..+...  .++.|.    |++++.+|+|.|.|.
T Consensus         4 ~v~~~~G~sVtl~c~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~----I~~l~~~DsG~Y~c~   78 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLT----IYNLTSSDEDEYEME   78 (93)
T ss_dssp             EEEEETTCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEE----ECSCCGGGCEEEEEE
T ss_pred             EEEEEECCCEEEEecC-CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEE----EEecChhhCEEEEEE
Confidence            4567899999999986 468899999999877642101         111111  234555    677799999999999


Q ss_pred             EEeCCCceeEEEEEEEE
Q psy18191        209 ARNELGFARSKNATLDV  225 (238)
Q Consensus       209 a~N~~G~~~s~~~~L~V  225 (238)
                      |.|..++.   .+.|.|
T Consensus        79 ~~n~~~t~---~~~l~V   92 (93)
T d1ccza1          79 SPNITDTM---KFFLYV   92 (93)
T ss_dssp             CTTCCSCE---EEEEEE
T ss_pred             EECCCcEE---EEEEEE
Confidence            99987755   456655

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.92  E-value=3.9e-09  Score=70.03  Aligned_cols=83  Identities=18%  Similarity=0.169  Sum_probs=59.6

Q ss_pred             eEEeCCCcEEEEEEE-ee-eCCCEEEEEeCCEEeecc--------CCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        141 AVVPRHEPTTLNCKA-DG-YPEPRIEWYKDGSLVSAE--------IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~-~g-~P~p~i~W~~~g~~l~~~--------~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      +....|+++.|.|.. .. .....|.|++++..+...        .........+++|.    |++++.+|+|.|+|.+.
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~----I~nl~~~DsG~Y~c~v~   80 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLK----IKNLTRDDSGTYNVTVY   80 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEE----ESSCCGGGCEEEEEEEE
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEE----EeCCCHHHCEEEEEEEE
Confidence            455789999999963 22 234579999998777431        12233444567776    66669999999999999


Q ss_pred             eCCCcee-EEEEEEEEcc
Q psy18191        211 NELGFAR-SKNATLDVAG  227 (238)
Q Consensus       211 N~~G~~~-s~~~~L~V~~  227 (238)
                      |..|... .+.+.|.|.+
T Consensus        81 ~~~g~~~~~~~~~L~V~E   98 (98)
T d1hnga1          81 STNGTRILNKALDLRILE   98 (98)
T ss_dssp             ETTCCEEEEEEEEEEEEC
T ss_pred             eCCCCEEEEEEEEEEEEC
Confidence            9999862 3578888853

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=1.6e-08  Score=69.84  Aligned_cols=91  Identities=18%  Similarity=0.194  Sum_probs=59.2

Q ss_pred             eCCCceEEeCCCcEEEEEEEeee---CCCEEEEEeCCEEee-----------ccC---CccEEE-e----cCCcEEEEEe
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGY---PEPRIEWYKDGSLVS-----------AEI---GSHRIL-L----PAGSLFFLSL  193 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~---P~p~i~W~~~g~~l~-----------~~~---~~~~~~-~----~~~~l~~~~v  193 (238)
                      .+...+.+..|+++.|.|...+.   ....+.|++.+....           ...   ...+.. .    ..+...  +.
T Consensus         7 ~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~s--L~   84 (126)
T d1pkoa_           7 GPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVA--LR   84 (126)
T ss_dssp             CCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEE--EE
T ss_pred             CCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEE--EE
Confidence            33445888999999999997532   234699998643110           000   011111 1    112222  33


Q ss_pred             ecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        194 VHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       194 i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      |++++.+|+|.|.|.+.|..|... ..+.|.|..++
T Consensus        85 I~~v~~~D~G~Y~C~v~~~~~~~~-~~v~L~V~~P~  119 (126)
T d1pkoa_          85 IQNVRFSDEGGYTCFFRDHSYQEE-AAVELKVEDPF  119 (126)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEE-EEEEEEEECTT
T ss_pred             EEEEchhHCeEEEEEEEECCCEEE-EEEEEEEeCCC
Confidence            888899999999999999988886 58999998764

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.7e-08  Score=66.90  Aligned_cols=93  Identities=19%  Similarity=0.240  Sum_probs=59.3

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV  208 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~  208 (238)
                      ..+|.+...|.. .+..|++++|.|.+. .+.-.+.|+++|....................+  .|..|+..|+|.|.|.
T Consensus         5 lpkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F--~l~~vt~~~~G~Y~C~   80 (99)
T d1ucta1           5 FPMPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEF--VIDHMDANKAGRYQCQ   80 (99)
T ss_dssp             SCCCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEE--EECSCCGGGCEEEEEE
T ss_pred             CCCCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEE--EecCCCHHHCceEEEE
Confidence            357888887765 578999999999864 345678899876422211000000011111112  2667799999999999


Q ss_pred             EEeCCC-ceeEEEEEEEE
Q psy18191        209 ARNELG-FARSKNATLDV  225 (238)
Q Consensus       209 a~N~~G-~~~s~~~~L~V  225 (238)
                      ..|..+ +..|..+.|.|
T Consensus        81 y~~~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          81 YRIGHYRFRYSDTLELVV   98 (99)
T ss_dssp             EEETTTEEEECCCEEEEE
T ss_pred             EECCCcccCCCCCEEEEe
Confidence            999876 44566777776

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=5.4e-09  Score=70.48  Aligned_cols=79  Identities=19%  Similarity=0.208  Sum_probs=53.1

Q ss_pred             EeCCCcEEEEEEEeeeCCCEEEEEeCCEEeec--------c---------CCccEEEecCCcEEEEEeecCCCCCCCeEE
Q psy18191        143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA--------E---------IGSHRILLPAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       143 ~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~--------~---------~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                      +.+|+++.|.|.........+.|+|.......        .         -.++.....+++|.    |++++.+|+|.|
T Consensus        11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~----I~~v~~~D~G~Y   86 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLL----FQMITMKDMGVY   86 (107)
T ss_dssp             CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEE----ECSCCGGGCEEE
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEE----EcCCCchhCEEE
Confidence            56999999999744444678999985421110        0         01233445677776    566699999999


Q ss_pred             EEEEEeCCCceeEEEEEEEE
Q psy18191        206 WCVARNELGFARSKNATLDV  225 (238)
Q Consensus       206 ~C~a~N~~G~~~s~~~~L~V  225 (238)
                      +|.+.+.-+......+.|.|
T Consensus        87 ~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          87 TLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEEETTEEECCCCEEECC
T ss_pred             EEEEEECCCCEEEEEEEEEE
Confidence            99999887554334677765

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=2e-07  Score=62.67  Aligned_cols=94  Identities=19%  Similarity=0.156  Sum_probs=55.9

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEee-eCCC--EEEEEeCCEEeeccCCccEEEecCCcEEEEE-eecCCCCCCCe-EE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADG-YPEP--RIEWYKDGSLVSAEIGSHRILLPAGSLFFLS-LVHGKKDTDSG-VY  205 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g-~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~-vi~~v~~~d~G-~Y  205 (238)
                      +|.|....   .+.+|+.+.|.|.+.+ .|.+  .+.|++++..+........ ....+...... +....+.+|.| .|
T Consensus         4 ~P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~-~~~~~~~~~~s~l~~~~~~~D~g~~l   79 (109)
T d1vcaa1           4 DPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLED-ADRKSLETKSLEVTFTPVIEDIGKVL   79 (109)
T ss_dssp             CCEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSC-CSSCCCEEEEEEEEECCCGGGTTCEE
T ss_pred             CCEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccc-cccCCcceeeEEEEccCChHHCCcEE
Confidence            56676532   3679999999999864 6754  6899999988764211111 01122222111 11234666766 89


Q ss_pred             EEEEEeCCCce------eEEEEEEEEccC
Q psy18191        206 WCVARNELGFA------RSKNATLDVAGK  228 (238)
Q Consensus       206 ~C~a~N~~G~~------~s~~~~L~V~~~  228 (238)
                      +|.|.|.++..      ......|.|...
T Consensus        80 tC~a~~~~~~~~~~~~~~~t~~~L~V~~~  108 (109)
T d1vcaa1          80 VCRAKLHIDEMDSVPTVRQAVKELQVYIS  108 (109)
T ss_dssp             EEEEEECSCCCTTSCSEEEEEEECCEECC
T ss_pred             EEEEEcCcCCccccccccceeEEeEEEeC
Confidence            99999987552      222455777554

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.8e-07  Score=60.34  Aligned_cols=91  Identities=20%  Similarity=0.207  Sum_probs=60.2

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      -+|.+...|.. .+..|++++|.|... .+...+.|+|+|........   .....+.. ....|..|+..|+|.|.|..
T Consensus         3 PKPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~---~~~~~~~~-a~F~i~~v~~~~~G~Y~C~y   76 (95)
T d1olla1           3 PKPFIWAEPHF-MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRP---KPPERINK-VKFYIPDMNSRMAGQYSCIY   76 (95)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECC---SSCTTCCE-EEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEeeCCC-cccCCCcEEEEEecC-CCccEEEEEECCCCcceeEE---ccCCCccE-EEEEEeeeecCCCceEEEEe
Confidence            46888877755 467999999999863 34567889999865432100   00011211 11226788999999999999


Q ss_pred             EeCCC-ceeEEEEEEEEc
Q psy18191        210 RNELG-FARSKNATLDVA  226 (238)
Q Consensus       210 ~N~~G-~~~s~~~~L~V~  226 (238)
                      .+..+ +..|+.+.|.|.
T Consensus        77 ~~~~~~S~~Sd~leL~VT   94 (95)
T d1olla1          77 RVGELWSEPSNLLDLVVT   94 (95)
T ss_dssp             EETTEECCCCCCEEEEEE
T ss_pred             CCCCCccCCCCCEEEEEe
Confidence            98765 344567788774

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.34  E-value=2e-06  Score=58.06  Aligned_cols=80  Identities=20%  Similarity=0.341  Sum_probs=50.8

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC--E---Eeec-cC------CccE-EEecCCcEEEEEeecCCCCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG--S---LVSA-EI------GSHR-ILLPAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g--~---~l~~-~~------~~~~-~~~~~~~l~~~~vi~~v~~~  200 (238)
                      +...|..+.+.+|+.++|.|.....+...+.|++..  .   .|.. ..      .... ...........+.|..+..+
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~   82 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS   82 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence            344567788999999999999877677789999732  1   1111 00      0111 11111222233347888999


Q ss_pred             CCeEEEEEEEeCC
Q psy18191        201 DSGVYWCVARNEL  213 (238)
Q Consensus       201 d~G~Y~C~a~N~~  213 (238)
                      |+|.|.|.+.+..
T Consensus        83 Dsg~Y~Ca~~~~~   95 (114)
T d2cdea1          83 DSASYICVVSDRG   95 (114)
T ss_dssp             GCSEEEEEEECSC
T ss_pred             hCcccceeeecCC
Confidence            9999999998753

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.31  E-value=5.5e-06  Score=55.73  Aligned_cols=80  Identities=24%  Similarity=0.417  Sum_probs=50.7

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEE---ee-ccC-------CccEEEe-cCCcEEEEEeecCCCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSL---VS-AEI-------GSHRILL-PAGSLFFLSLVHGKKD  199 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~---l~-~~~-------~~~~~~~-~~~~l~~~~vi~~v~~  199 (238)
                      +...|..+.+.+|+.+.|.|...+.....+.|++.  |..   +. ...       ....... ..+.. ..+.|..++.
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~i~~~~~   81 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGR-STLYIAASQP   81 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTE-EEEEESSCCG
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCE-EEeeeecCCC
Confidence            34557778899999999999987766677999972  211   11 000       1111111 12222 2233788899


Q ss_pred             CCCeEEEEEEEeCCC
Q psy18191        200 TDSGVYWCVARNELG  214 (238)
Q Consensus       200 ~d~G~Y~C~a~N~~G  214 (238)
                      +|+|.|.|.+....+
T Consensus        82 ~Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          82 GDSATYLCAVRPTSG   96 (113)
T ss_dssp             GGCEEEEEEEEESSS
T ss_pred             CCCcEEeEeEecCCC
Confidence            999999999875543

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.5e-06  Score=55.76  Aligned_cols=88  Identities=20%  Similarity=0.194  Sum_probs=57.6

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      -+|.+...|.. .+..|++++|.|.......-.+.|+|+|.....    .. ........+  .|..++.+|+|.|.|..
T Consensus         4 PkP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~----~~-~~~~~~a~F--~l~~v~~~~~G~Y~C~y   75 (96)
T d1ucta2           4 GKPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLP----QH-QSGEHPANF--SLGPVDLNVSGIYRCYG   75 (96)
T ss_dssp             CCCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCC----SE-EECSSSEEE--ECCSCCGGGCEEEEEEE
T ss_pred             CCCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccce----EE-cCCCcccEE--EEeccccccCcEEEEEE
Confidence            47888887754 689999999999863333446889999853321    11 122222222  26778999999999988


Q ss_pred             EeCC----CceeEEEEEEEE
Q psy18191        210 RNEL----GFARSKNATLDV  225 (238)
Q Consensus       210 ~N~~----G~~~s~~~~L~V  225 (238)
                      ....    .+..|+.+.|.|
T Consensus        76 ~~~~~p~~~S~~Sd~leL~V   95 (96)
T d1ucta2          76 WYNRSPYLWSFPSNALELVV   95 (96)
T ss_dssp             ECTTSTTEECCCCCCEEEEE
T ss_pred             EcCCCCCCccCCCCCEEEEE
Confidence            7543    233355666665

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=1.3e-06  Score=59.90  Aligned_cols=79  Identities=15%  Similarity=0.256  Sum_probs=52.9

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEE------ee-ccC-----------C-ccEE-E-ecCCc
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSL------VS-AEI-----------G-SHRI-L-LPAGS  187 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~------l~-~~~-----------~-~~~~-~-~~~~~  187 (238)
                      +|.+...|..+.+.+|++++|.|.+.+...+.+.|++.  |..      +. ...           . ..++ . ..++.
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            47788888999999999999999988877788999872  211      11 000           0 1111 1 12222


Q ss_pred             EEEEEeecCCCCCCCeEEEEEEE
Q psy18191        188 LFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       188 l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      . ..+.|..++.+|+|.|.|.+.
T Consensus        81 ~-~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          81 K-YVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             E-EEEEESSCCGGGCEEEEEEEE
T ss_pred             E-eEEEEcccccCCCEEEEeeEe
Confidence            2 223378889999999999875

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=8e-07  Score=60.60  Aligned_cols=82  Identities=26%  Similarity=0.330  Sum_probs=52.9

Q ss_pred             ceEEeCCCcEEEEEEEeeeCC----CEEEEEeCCE-------E-eecc----------C-CccEEEec----CC--cEEE
Q psy18191        140 SAVVPRHEPTTLNCKADGYPE----PRIEWYKDGS-------L-VSAE----------I-GSHRILLP----AG--SLFF  190 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~----p~i~W~~~g~-------~-l~~~----------~-~~~~~~~~----~~--~l~~  190 (238)
                      .+.+.+|+++.|.|...+.+.    ..+.|++...       . +...          . .++.....    .+  .|. 
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~-   91 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN-   91 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEE-
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEE-
Confidence            467789999999999865443    2488986211       0 0000          0 01111111    11  333 


Q ss_pred             EEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191        191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA  226 (238)
Q Consensus       191 ~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~  226 (238)
                         |..++.+|+|.|.|.+.|..|... ..+.|.|.
T Consensus        92 ---I~~v~~~D~G~Y~C~v~~~~~~~~-~~~~L~V~  123 (124)
T d1eaja_          92 ---VTNLQLSDIGTYQCKVKKAPGVAN-KKIHLVVL  123 (124)
T ss_dssp             ---ECSCCGGGCEEEEEEEEETTEEEE-EEEEEEEE
T ss_pred             ---EcccEEccCEEEEEEEEECCCeEE-eEEEEEEE
Confidence               677799999999999999988775 58888874

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.23  E-value=9.1e-06  Score=54.05  Aligned_cols=76  Identities=25%  Similarity=0.388  Sum_probs=48.5

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CE---Eeecc-------CCccE-EEecCCcEEEEEeecCCCCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GS---LVSAE-------IGSHR-ILLPAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~---~l~~~-------~~~~~-~~~~~~~l~~~~vi~~v~~~  200 (238)
                      ++..|..+.+.+|++++|.|.........+.|++.  +.   .+...       ..... .......  ..+.|..+..+
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~L~I~~l~~~   81 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATD--FTLTISSVQAD   81 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTE--EEEEESSCCGG
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCe--eecEEHhheec
Confidence            34557778899999999999987666667999973  21   11100       01111 1122222  23347889999


Q ss_pred             CCeEEEEEEEe
Q psy18191        201 DSGVYWCVARN  211 (238)
Q Consensus       201 d~G~Y~C~a~N  211 (238)
                      |+|.|.|-+..
T Consensus        82 DSa~YyCa~~~   92 (107)
T d1kcvl1          82 DDADYYCGQSY   92 (107)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCceEEEEecC
Confidence            99999997653

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=8.4e-06  Score=53.02  Aligned_cols=71  Identities=17%  Similarity=0.314  Sum_probs=46.3

Q ss_pred             eCCCcEEEEEEEee-eCCCEEEEEeCCEEeeccCCccEEEe-cCCcEEEEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        144 PRHEPTTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       144 ~~G~~~~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      ..++.+.|.|.+.| .|.|.|.|+++|..+... ....... .+|...+...|. +...+...|+|.+....-..
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~-~~~~~~~~~~g~y~v~S~L~-v~~~~~~~~tC~V~h~~l~~   86 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAI-NTTVSQDPETELYAVSSKLD-FNMTTNHSFMCLIKYGHLRV   86 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCS-EEEEEECTTTCCEEEEEEEE-EETTSCEEEEEEEEETTCCE
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEeccc-ceeeEecCCCccEEEEEEEE-ccCCccceEEEEEEecCCCC
Confidence            35778899999987 599999999999887642 1111122 235544433322 14456679999998876544

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.21  E-value=1e-05  Score=54.62  Aligned_cols=82  Identities=17%  Similarity=0.246  Sum_probs=50.2

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeee-CCCEEEEEe--CCEE---eecc----------CCccE-EEecCCcEEEEEeecC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGY-PEPRIEWYK--DGSL---VSAE----------IGSHR-ILLPAGSLFFLSLVHG  196 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~-P~p~i~W~~--~g~~---l~~~----------~~~~~-~~~~~~~l~~~~vi~~  196 (238)
                      ++..|..+.+.+|++++|.|...+. ....+.|++  .|..   |...          ...+. .........+.+.|..
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP   82 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence            4556778889999999999987543 567799987  2211   1100          01111 1111112122334788


Q ss_pred             CCCCCCeEEEEEEEeCCCc
Q psy18191        197 KKDTDSGVYWCVARNELGF  215 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N~~G~  215 (238)
                      ++.+|+|.|.|......+.
T Consensus        83 ~~~~Dsg~YyCa~~~~~~~  101 (116)
T d1tvda_          83 VRTEDSATYYCAFTLPPPT  101 (116)
T ss_dssp             CCGGGCEEEEEEEECTTTT
T ss_pred             ccccccccceeeEecCCCC
Confidence            8999999999987765443

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.21  E-value=8.2e-06  Score=54.30  Aligned_cols=77  Identities=16%  Similarity=0.268  Sum_probs=48.4

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEEe---ecc-------CCccEEEecCCcEEEEEeecCCCCCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSLV---SAE-------IGSHRILLPAGSLFFLSLVHGKKDTDS  202 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~l---~~~-------~~~~~~~~~~~~l~~~~vi~~v~~~d~  202 (238)
                      +..|..+.+.+|++++|.|.........+.|++.  |..+   ...       ..........++. ..+.|..++.+|+
T Consensus         5 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~I~~l~~~Ds   83 (107)
T d1c5cl1           5 TQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSD-YSLTISSLESEDF   83 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTE-EEEEESSCCGGGC
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCE-EEEEEhhhcccCC
Confidence            3456778889999999999987666667999972  3221   110       0111111112221 2234788899999


Q ss_pred             eEEEEEEEeC
Q psy18191        203 GVYWCVARNE  212 (238)
Q Consensus       203 G~Y~C~a~N~  212 (238)
                      |.|.|.+.+.
T Consensus        84 a~YyCa~~~~   93 (107)
T d1c5cl1          84 ADYYCLQYAS   93 (107)
T ss_dssp             SEEEEEECSS
T ss_pred             eEEEEecCcC
Confidence            9999976653

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.20  E-value=9.1e-06  Score=54.07  Aligned_cols=75  Identities=20%  Similarity=0.315  Sum_probs=47.9

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CE---Eeec-------cCCccEEEe-cCCcEEEEEeecCCCCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GS---LVSA-------EIGSHRILL-PAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~---~l~~-------~~~~~~~~~-~~~~l~~~~vi~~v~~~d  201 (238)
                      +..|..+.+.+|++++|.|...+.....+.|++.  |.   .+..       ....+.... .+...  .+.|..+..+|
T Consensus         5 tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~--~L~I~~~~~~D   82 (107)
T d1ospl1           5 SQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDY--TLSITSLQTED   82 (107)
T ss_dssp             ECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSE--EEEESSCCGGG
T ss_pred             EeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeE--EeEEccccccc
Confidence            3457778899999999999986665567999973  21   1111       001112112 22232  23478889999


Q ss_pred             CeEEEEEEEe
Q psy18191        202 SGVYWCVARN  211 (238)
Q Consensus       202 ~G~Y~C~a~N  211 (238)
                      +|.|.|-+..
T Consensus        83 sa~YyCa~~~   92 (107)
T d1ospl1          83 VATYFCQQYW   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             CCcEEEeecc
Confidence            9999997654

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.20  E-value=8.9e-06  Score=54.68  Aligned_cols=78  Identities=26%  Similarity=0.328  Sum_probs=49.6

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeee--CCCEEEEEeC--CE---EeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEE
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGY--PEPRIEWYKD--GS---LVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~--P~p~i~W~~~--g~---~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      +...|..+.+.+|++++|.|...+.  +...+.|++.  +.   .+.............+...+.+.|..++.+|+|.|.
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   82 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYK   82 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEe
Confidence            4555778889999999999998653  4467999962  22   111111222222222222233347888999999999


Q ss_pred             EEEEe
Q psy18191        207 CVARN  211 (238)
Q Consensus       207 C~a~N  211 (238)
                      |.+..
T Consensus        83 Ca~~~   87 (113)
T d1vesa_          83 CQAFY   87 (113)
T ss_dssp             EEEEE
T ss_pred             eeeec
Confidence            99864

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=2.5e-06  Score=56.12  Aligned_cols=83  Identities=18%  Similarity=0.267  Sum_probs=53.2

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCC--CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPE--PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      ..+|.+...+.. .+..|+.++|.|.+.|.-+  -.++|++||..+............+|+..+...+. +..++.+.|+
T Consensus         3 ~~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~-v~~~~~~~yt   80 (100)
T d1k5nb_           3 QRTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTE-FTPTEKDEYA   80 (100)
T ss_dssp             CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEE-ECCCSSCCEE
T ss_pred             cCCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeE-ECCCCCCEEE
Confidence            456777654222 2357889999999999743  36899999998854211222334566655444332 2556677899


Q ss_pred             EEEEeCC
Q psy18191        207 CVARNEL  213 (238)
Q Consensus       207 C~a~N~~  213 (238)
                      |.+.-..
T Consensus        81 C~V~H~s   87 (100)
T d1k5nb_          81 CRVNHVT   87 (100)
T ss_dssp             EEEECTT
T ss_pred             EEEEeCC
Confidence            9988643

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.19  E-value=3.5e-06  Score=56.93  Aligned_cols=80  Identities=20%  Similarity=0.293  Sum_probs=49.0

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CE---Eeecc--------CCccEEEecCCcEEEEEeecCCCCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GS---LVSAE--------IGSHRILLPAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~---~l~~~--------~~~~~~~~~~~~l~~~~vi~~v~~~  200 (238)
                      ++..|..+.+.+|+.++|.|.......+.+.|+|.  |.   .|...        ................+.|..++.+
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS   83 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence            44556678899999999999987777788999973  21   11110        0111111111111111226778999


Q ss_pred             CCeEEEEEEEeCC
Q psy18191        201 DSGVYWCVARNEL  213 (238)
Q Consensus       201 d~G~Y~C~a~N~~  213 (238)
                      |+|.|.|.+...-
T Consensus        84 Dsg~YyCa~~~~~   96 (115)
T d1lp9e1          84 DSALYYCALFLAS   96 (115)
T ss_dssp             GCEEEEEEEEECS
T ss_pred             cCccceEEEEcCC
Confidence            9999999876543

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.18  E-value=7e-06  Score=54.56  Aligned_cols=76  Identities=24%  Similarity=0.420  Sum_probs=47.7

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEEee----------ccCCccEEEecCCcEEEEEeecCCCCCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSLVS----------AEIGSHRILLPAGSLFFLSLVHGKKDTDS  202 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~l~----------~~~~~~~~~~~~~~l~~~~vi~~v~~~d~  202 (238)
                      +..|..+.+.+|++++|.|.........+.|++.  |..+.          .....+......+.. ..+.|..+..+|+
T Consensus         5 tQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~-~~L~I~~~~~~Ds   83 (106)
T d1i8ka_           5 TQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTD-FVFTIENTLSEDV   83 (106)
T ss_dssp             EEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTE-EEEEESSCCGGGC
T ss_pred             EeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCe-eeecccCCccccC
Confidence            4456778889999999999876655567999963  22111          001112111112222 2234789999999


Q ss_pred             eEEEEEEEe
Q psy18191        203 GVYWCVARN  211 (238)
Q Consensus       203 G~Y~C~a~N  211 (238)
                      |.|.|.+.+
T Consensus        84 a~YyCa~~~   92 (106)
T d1i8ka_          84 GDYYCLQSF   92 (106)
T ss_dssp             EEEEEEECS
T ss_pred             EEEeEecCc
Confidence            999997654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.17  E-value=1.3e-05  Score=53.35  Aligned_cols=78  Identities=23%  Similarity=0.396  Sum_probs=48.4

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEEe---ec-------cCCccEEEecCCcEEEEEeecCCCCCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSLV---SA-------EIGSHRILLPAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~l---~~-------~~~~~~~~~~~~~l~~~~vi~~v~~~d  201 (238)
                      ++..|..+.+.+|++++|.|.........+.|++.  |..+   ..       ....+.....++.- ..+.|..++.+|
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~-~~L~I~~~~~~D   82 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTD-FTLSINSVETED   82 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTE-EEEEESSCCGGG
T ss_pred             EECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCE-EEEEEcccCcCC
Confidence            34556778899999999999876655667999973  2111   10       00112211112222 223378889999


Q ss_pred             CeEEEEEEEeC
Q psy18191        202 SGVYWCVARNE  212 (238)
Q Consensus       202 ~G~Y~C~a~N~  212 (238)
                      +|.|.|-+.+.
T Consensus        83 sa~YyCa~~~~   93 (107)
T d1j1pl_          83 FGMYFCQQANS   93 (107)
T ss_dssp             CEEEEEEECSS
T ss_pred             CEEEEEEcCCC
Confidence            99999976543

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.16  E-value=1.7e-05  Score=52.77  Aligned_cols=78  Identities=27%  Similarity=0.445  Sum_probs=48.5

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CE---Eeecc-------CCccEEEecCCcEEEEEeecCCCCCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GS---LVSAE-------IGSHRILLPAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~---~l~~~-------~~~~~~~~~~~~l~~~~vi~~v~~~d  201 (238)
                      ++..|..+.+.+|++++|.|...+.....+.|++.  +.   .+...       .........++... .+.|..+..+|
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~L~i~~l~~~D   82 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDF-TLTISSLEPED   82 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEE-EEEECSCCTTC
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEE-EeEeeeeEecc
Confidence            34456778899999999999987666667999972  11   11110       01112222233222 22378889999


Q ss_pred             CeEEEEEEEeC
Q psy18191        202 SGVYWCVARNE  212 (238)
Q Consensus       202 ~G~Y~C~a~N~  212 (238)
                      +|.|.|-+.+.
T Consensus        83 sa~YyCA~~~~   93 (108)
T d1jhll_          83 FAMYICQQHNE   93 (108)
T ss_dssp             CSEEEEEECSS
T ss_pred             ceEEEEeeCCC
Confidence            99999976553

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=7.5e-06  Score=53.68  Aligned_cols=82  Identities=18%  Similarity=0.291  Sum_probs=51.7

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCC--CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPE--PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      .+|.+...+.. ....|+.++|.|.+.|.-+  ..++|+++|..+............+|+......+. +...+.+.|+|
T Consensus         3 ~~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~-v~~~~~~~ytC   80 (99)
T d1lk2b_           3 KTPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTE-FTPTETDTYAC   80 (99)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEE-ECCCSSCCEEE
T ss_pred             CCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeE-ecCcCCCEEEE
Confidence            56776553222 2346888999999998733  46999999998764211222234556655544433 25556678999


Q ss_pred             EEEeCC
Q psy18191        208 VARNEL  213 (238)
Q Consensus       208 ~a~N~~  213 (238)
                      .+.-..
T Consensus        81 ~V~H~s   86 (99)
T d1lk2b_          81 RVKHDS   86 (99)
T ss_dssp             EEECTT
T ss_pred             EEEeCC
Confidence            987643

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.16  E-value=1.1e-05  Score=53.51  Aligned_cols=77  Identities=22%  Similarity=0.337  Sum_probs=48.0

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CE--Eeecc--------CCccEEEecCCcEEEEEeecCCCCCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GS--LVSAE--------IGSHRILLPAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~--~l~~~--------~~~~~~~~~~~~l~~~~vi~~v~~~d  201 (238)
                      ++..|..+.+.+|++++|.|.........+.|++.  |.  .+...        ...+......+.. ..+.|..+..+|
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~L~I~~~~~~D   81 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRD-YSFSISNLEPED   81 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTE-EEEEECSCCGGG
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCE-eeeEehhhcccC
Confidence            34456778899999999999876666667999973  11  11100        0111111112222 223378889999


Q ss_pred             CeEEEEEEEe
Q psy18191        202 SGVYWCVARN  211 (238)
Q Consensus       202 ~G~Y~C~a~N  211 (238)
                      +|.|.|-+.+
T Consensus        82 sA~YyCa~~~   91 (106)
T d1a0ql1          82 IATYYCLQYY   91 (106)
T ss_dssp             CSEEEEEECS
T ss_pred             CEeEEEEEeC
Confidence            9999998754

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.13  E-value=1.7e-05  Score=52.56  Aligned_cols=76  Identities=22%  Similarity=0.389  Sum_probs=47.8

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--C---EEeecc-------CCccEEEecCCcEEEEEeecCCCCCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--G---SLVSAE-------IGSHRILLPAGSLFFLSLVHGKKDTDS  202 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g---~~l~~~-------~~~~~~~~~~~~l~~~~vi~~v~~~d~  202 (238)
                      +..|..+.+.+|++++|.|...+.-...+.|++.  |   +.+...       ...+.....++.. ..+.|..++.+|+
T Consensus         4 tQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~-~~L~I~~~~~~Ds   82 (106)
T d1op3k1           4 TQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTE-FTLTISGLQFDDF   82 (106)
T ss_dssp             EEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTE-EEEEEESCCGGGC
T ss_pred             eCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCE-EEEEEccccccCC
Confidence            3457788999999999999886655667999973  2   111110       0111111112222 2233788899999


Q ss_pred             eEEEEEEEe
Q psy18191        203 GVYWCVARN  211 (238)
Q Consensus       203 G~Y~C~a~N  211 (238)
                      |.|.|-+..
T Consensus        83 a~YyCa~~~   91 (106)
T d1op3k1          83 ATYHCQHYA   91 (106)
T ss_dssp             SEEEEEEEC
T ss_pred             CcEeeeeCC
Confidence            999997664

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.13  E-value=1.6e-05  Score=52.83  Aligned_cols=77  Identities=16%  Similarity=0.275  Sum_probs=47.6

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CE---Eeecc------C-CccEEEecCCcEEEEEeecCCCCCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GS---LVSAE------I-GSHRILLPAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~---~l~~~------~-~~~~~~~~~~~l~~~~vi~~v~~~d  201 (238)
                      ++..|..+.+.+|++++|.|.....-...+.|++.  |.   .|...      . ..+......+.- ..+.|..+..+|
T Consensus         4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~-~~L~I~~~~~~D   82 (107)
T d1mexl1           4 MTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTD-FTLTINNVQSED   82 (107)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTE-EEEEESSCCGGG
T ss_pred             EEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCe-eeeeechhheec
Confidence            34456678889999999999976555567999973  21   11110      0 111111111222 233488999999


Q ss_pred             CeEEEEEEEe
Q psy18191        202 SGVYWCVARN  211 (238)
Q Consensus       202 ~G~Y~C~a~N  211 (238)
                      ++.|.|-+..
T Consensus        83 sA~YyCa~~~   92 (107)
T d1mexl1          83 LAEYFCQQYN   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             ceeEEEeECC
Confidence            9999997653

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=5.6e-06  Score=55.83  Aligned_cols=92  Identities=14%  Similarity=0.168  Sum_probs=53.3

Q ss_pred             CCCceEEeCCCcEEEEEEEeee---CCCEEEEEeCCE-----Eeecc-------CCcc-EEEecCCcEEEEEeecCCCCC
Q psy18191        137 HPASAVVPRHEPTTLNCKADGY---PEPRIEWYKDGS-----LVSAE-------IGSH-RILLPAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~---P~p~i~W~~~g~-----~l~~~-------~~~~-~~~~~~~~l~~~~vi~~v~~~  200 (238)
                      .|..+.+.+|++++|.|...+.   ....+.|++...     .+...       ...+ ..........+...|..++.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            4667888999999999985322   234578987421     11111       0111 122111111122348889999


Q ss_pred             CCeEEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191        201 DSGVYWCVARNELGFARSKNATLDVAGKI  229 (238)
Q Consensus       201 d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~  229 (238)
                      |+|.|.|.+........ ..+.|.|.+..
T Consensus        85 DsG~Y~C~v~~~~~~~~-~~v~L~V~~~~  112 (116)
T d1xeda_          85 DSGRYKCGLGINSRGLS-FDVSLEVLEHH  112 (116)
T ss_dssp             GCEEEEEEESCGGGCCE-EEEEEEEECCC
T ss_pred             CCEEEEEEEEcCCCCce-EeEEEEEECCC
Confidence            99999998764433333 46788887654

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.12  E-value=1.7e-05  Score=52.73  Aligned_cols=76  Identities=20%  Similarity=0.369  Sum_probs=48.0

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CE---Eeecc-------CCccEEE-ecCCcEEEEEeecCCCCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GS---LVSAE-------IGSHRIL-LPAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~---~l~~~-------~~~~~~~-~~~~~l~~~~vi~~v~~~  200 (238)
                      ++..|..+.+.+|++++|.|.........+.|++.  |.   .|...       ...+... ..+...  .+.|..++.+
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~L~I~~l~~~   81 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEF--TLTISTLRPE   81 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEE--EEEESSCCGG
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEE--EEEeccceeC
Confidence            34557788899999999999986555678999973  21   12110       0111111 122222  2337888999


Q ss_pred             CCeEEEEEEEe
Q psy18191        201 DSGVYWCVARN  211 (238)
Q Consensus       201 d~G~Y~C~a~N  211 (238)
                      |+|.|.|-+.+
T Consensus        82 DsA~YyCa~~~   92 (107)
T d1tjgl1          82 DFATYYCQQLH   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             cCceEEEEECc
Confidence            99999996554

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.11  E-value=7e-06  Score=53.84  Aligned_cols=89  Identities=19%  Similarity=0.220  Sum_probs=54.2

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcE--EEEEeecCCCCCCCeEEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL--FFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l--~~~~vi~~v~~~d~G~Y~  206 (238)
                      ..+|.+...|. ..+..|++++|.|...- +.-.+.|+|+|......  ........+..  .+..+    ...|+|.|.
T Consensus         4 ~pkPsLsa~P~-~~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~--~~~~~~~~~~~~f~~~~~----~~~~~G~Y~   75 (99)
T d1nkra2           4 YEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERR--LPAGPKVNGTFQADFPLG----PATHGGTYR   75 (99)
T ss_dssp             SCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEE--EECEEEETTEEEEEEEEE----ECCSCEEEE
T ss_pred             CCCCEEEEeCC-CcccCCCeEEEEECCCC-CccEEEEEECCCccccE--EEccccCCccEEEEEecc----ccccCEEEE
Confidence            35788877775 46789999999998632 45578899998543211  00011122222  33333    788999999


Q ss_pred             EEEEeCC----CceeEEEEEEEE
Q psy18191        207 CVARNEL----GFARSKNATLDV  225 (238)
Q Consensus       207 C~a~N~~----G~~~s~~~~L~V  225 (238)
                      |......    .+..|+.+.|.|
T Consensus        76 C~y~~~~~p~~wS~~SdpLeL~V   98 (99)
T d1nkra2          76 CFGSFHDSPYEWSKSSDPLLVSV   98 (99)
T ss_dssp             EEEEETTEEEEECCCCCCEEEEE
T ss_pred             EEeecCCCCCCccCCCCCEEEEE
Confidence            9876433    233345666655

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.09  E-value=7.1e-06  Score=55.35  Aligned_cols=79  Identities=15%  Similarity=0.269  Sum_probs=48.6

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CE---Eeec-cC--------CccEEEecCCcEEEEEeecCCCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GS---LVSA-EI--------GSHRILLPAGSLFFLSLVHGKKD  199 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~---~l~~-~~--------~~~~~~~~~~~l~~~~vi~~v~~  199 (238)
                      ++..|..+.+.+|+.++|.|.........+.|++.  |.   .|.. ..        ...............+.|..++.
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM   82 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc
Confidence            34456778899999999999987666678999972  21   1111 00        01111111111111223778899


Q ss_pred             CCCeEEEEEEEeC
Q psy18191        200 TDSGVYWCVARNE  212 (238)
Q Consensus       200 ~d~G~Y~C~a~N~  212 (238)
                      +|+|.|.|-+...
T Consensus        83 ~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          83 SDAAEYFCAVSES   95 (115)
T ss_dssp             GGCEEEEEEEESS
T ss_pred             cCCccceeeecCC
Confidence            9999999988754

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.09  E-value=1.2e-05  Score=53.88  Aligned_cols=78  Identities=22%  Similarity=0.288  Sum_probs=49.4

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeee--CCCEEEEEeC--CE---EeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGY--PEPRIEWYKD--GS---LVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~--P~p~i~W~~~--g~---~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      ...|..+.+.+|+.++|.|...+.  ....+.|++.  |.   .+.............+...+.+.|..++.+|+|.|.|
T Consensus         3 ~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   82 (112)
T d1sq2n_           3 DQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRC   82 (112)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             EecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeE
Confidence            445677888999999999987543  4567999972  21   1211111122222333333344588899999999999


Q ss_pred             EEEeC
Q psy18191        208 VARNE  212 (238)
Q Consensus       208 ~a~N~  212 (238)
                      -+...
T Consensus        83 A~~~~   87 (112)
T d1sq2n_          83 GLGVA   87 (112)
T ss_dssp             EECBT
T ss_pred             EEecC
Confidence            77644

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.08  E-value=1.1e-05  Score=54.25  Aligned_cols=75  Identities=19%  Similarity=0.359  Sum_probs=45.6

Q ss_pred             eCCCceEEeCCCcEEEEEEEeee-CCCEEEEEeC-----CEEee---cc-----------CCc-c-EEEecCCcEEEEEe
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGY-PEPRIEWYKD-----GSLVS---AE-----------IGS-H-RILLPAGSLFFLSL  193 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~-P~p~i~W~~~-----g~~l~---~~-----------~~~-~-~~~~~~~~l~~~~v  193 (238)
                      ..|..+.+.+|++++|.|.+.+. ....+.|++.     ++.+.   ..           ... + ............+.
T Consensus         3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (115)
T d2atpb1           3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLS   82 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEE
T ss_pred             eeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEe
Confidence            34667889999999999998763 4567999973     22221   00           011 1 11111111111123


Q ss_pred             ecCCCCCCCeEEEEEEE
Q psy18191        194 VHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       194 i~~v~~~d~G~Y~C~a~  210 (238)
                      |..++.+|+|.|.|.+.
T Consensus        83 I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          83 IMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ecccCCCCCcEEEEeEc
Confidence            67889999999999775

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=4.7e-06  Score=54.36  Aligned_cols=78  Identities=17%  Similarity=0.331  Sum_probs=48.0

Q ss_pred             eEEeCCCcEEEEEEEeeeCCCEEEEEeCCEE--eecc---------CCccEEEe-----cCCcEEEEEeecCCCCCCCeE
Q psy18191        141 AVVPRHEPTTLNCKADGYPEPRIEWYKDGSL--VSAE---------IGSHRILL-----PAGSLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~--l~~~---------~~~~~~~~-----~~~~l~~~~vi~~v~~~d~G~  204 (238)
                      +...+|++++|.|.........+.|++....  +...         ....+...     ..+...+  .|..++.+|+|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL--~I~~l~~~DsG~   81 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL--IIKNLKIEDSDT   81 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCE--EECSCCGGGCEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEE--EECCCChHHCEE
Confidence            4567899999999987767778999975321  1110         00111111     1222222  377889999999


Q ss_pred             EEEEEEeCCCceeEEEEEEEE
Q psy18191        205 YWCVARNELGFARSKNATLDV  225 (238)
Q Consensus       205 Y~C~a~N~~G~~~s~~~~L~V  225 (238)
                      |.|.+.|.    . ..+.|.|
T Consensus        82 Y~C~v~~~----~-~~v~L~V   97 (97)
T d2nxyb1          82 YICEVEDQ----K-EEVQLLV   97 (97)
T ss_dssp             EEEEETTE----E-EEEEEEE
T ss_pred             EEEEEecC----C-eEEEEEC
Confidence            99998653    2 3556654

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=3.5e-05  Score=51.70  Aligned_cols=78  Identities=21%  Similarity=0.342  Sum_probs=48.6

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeee-CCCEEEEEeC--CEE---e-ec-------cCCcc-EEEe-cCCcEEEEEeecCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGY-PEPRIEWYKD--GSL---V-SA-------EIGSH-RILL-PAGSLFFLSLVHGK  197 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~-P~p~i~W~~~--g~~---l-~~-------~~~~~-~~~~-~~~~l~~~~vi~~v  197 (238)
                      ++..|..+.+.+|++++|.|...+. ....+.|++.  |..   + ..       ....+ .... .++.. ..+.|..+
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~-~~L~I~~~   80 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHD-FHMNILDT   80 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSE-EEEEESSC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCE-EEEEECcc
Confidence            3456778899999999999997543 4467899972  221   1 10       01111 1211 12222 22337888


Q ss_pred             CCCCCeEEEEEEEeC
Q psy18191        198 KDTDSGVYWCVARNE  212 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N~  212 (238)
                      ..+|+|.|.|-+...
T Consensus        81 ~~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          81 RRNDSGIYLCGAISL   95 (114)
T ss_dssp             CGGGCEEEEEEEECS
T ss_pred             CcCCCeEEEEEEEeC
Confidence            999999999987654

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=8.7e-06  Score=52.71  Aligned_cols=89  Identities=20%  Similarity=0.232  Sum_probs=54.9

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      .+|.+...|. ..+..|++++|.|... .+.-.+.|+|+|..-..     ........-.+  .|..++..|+|.|+|..
T Consensus         3 pkPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~-----~~~~~~~~a~F--~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2           3 DTPTLSVHPG-PEVISGEKVTFYCRLD-TATSMFLLLKEGRSSHV-----QRGYGKVQAEF--PLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             CCCEEEEESC-SEEETTCEEEEEEECS-SSCSEEEEEEESSSCEE-----EEEECSSEEEE--EEEECCGGGCEEEEEEC
T ss_pred             CCCEEEEeCC-CcccCCCcEEEEECCC-CCCCEEEEEECCCccce-----eecCCCceeEE--EecccChhcCceEEEEe
Confidence            4678877775 4578899999999863 24567888998753221     11111121111  25566999999999974


Q ss_pred             Ee-CC-CceeEEEEEEEEcc
Q psy18191        210 RN-EL-GFARSKNATLDVAG  227 (238)
Q Consensus       210 ~N-~~-G~~~s~~~~L~V~~  227 (238)
                      .. .. -+..|+.+.|.|.+
T Consensus        74 ~~~~~~wS~~SdpLeL~VtG   93 (93)
T d1olla2          74 SYNNHAWSFPSEPVKLLVTG   93 (93)
T ss_dssp             EEETTEECCCCCCEEEEEEC
T ss_pred             ECCCCCcCCCCCCEEEEeeC
Confidence            32 22 23335567777653

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.06  E-value=6.7e-06  Score=55.48  Aligned_cols=77  Identities=22%  Similarity=0.338  Sum_probs=47.5

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CE---Eee-cc--------CCccEEEec-CCcEEEEEeecCCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GS---LVS-AE--------IGSHRILLP-AGSLFFLSLVHGKK  198 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~---~l~-~~--------~~~~~~~~~-~~~l~~~~vi~~v~  198 (238)
                      ++..|..+.+.+|++++|.|.......+.+.|++.  |.   .+. ..        ....+.... .+.. ..+.|..+.
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~I~~~~   81 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSS-FHLRKASVH   81 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTB-CCEEESSCC
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCE-EEEeccccc
Confidence            34455678899999999999987666678899972  21   111 00        011122211 1111 122378889


Q ss_pred             CCCCeEEEEEEEe
Q psy18191        199 DTDSGVYWCVARN  211 (238)
Q Consensus       199 ~~d~G~Y~C~a~N  211 (238)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsg~YyCa~~~   94 (115)
T d1i9ea_          82 WSDSAVYFCAVSG   94 (115)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             ccccceecccccC
Confidence            9999999997763

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.05  E-value=2.9e-05  Score=51.43  Aligned_cols=72  Identities=24%  Similarity=0.437  Sum_probs=45.2

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--C---EEeecc------C-CccEEEecCCcEEEEEeecCCCCCCCeEE
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKD--G---SLVSAE------I-GSHRILLPAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g---~~l~~~------~-~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                      |..+.+.+|++++|.|...+.....+.|++.  |   ..+...      . ..+.....++.- ..+.|..++.+|+|.|
T Consensus         7 p~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~-~~L~I~~~~~~Dsa~Y   85 (106)
T d1lk3l1           7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTD-FTLTIDPVEADDTAIY   85 (106)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTE-EEEEESSCCGGGCEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCE-EEeEECCcChhhCCCc
Confidence            3467889999999999987666677999973  2   111110      0 112111112222 2334789999999999


Q ss_pred             EEEEE
Q psy18191        206 WCVAR  210 (238)
Q Consensus       206 ~C~a~  210 (238)
                      .|-+.
T Consensus        86 yCa~~   90 (106)
T d1lk3l1          86 FCQQS   90 (106)
T ss_dssp             EEEEC
T ss_pred             ccccc
Confidence            99654

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.05  E-value=3e-05  Score=51.48  Aligned_cols=78  Identities=22%  Similarity=0.412  Sum_probs=48.4

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CE---Eeecc-------CCccEEEecCCcEEEEEeecCCCCCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GS---LVSAE-------IGSHRILLPAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~---~l~~~-------~~~~~~~~~~~~l~~~~vi~~v~~~d  201 (238)
                      ++..|..+.+.+|++++|.|.........+.|++.  +.   .+...       ...+......+... .+.|..+..+|
T Consensus         4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~-~L~I~~~~~~D   82 (107)
T d1d5il1           4 MTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDY-SLTISSLEYED   82 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEE-EEEESSCCGGG
T ss_pred             EEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEE-EccccccCCcC
Confidence            34456778899999999999986666667899963  21   11110       01122111122222 23378899999


Q ss_pred             CeEEEEEEEeC
Q psy18191        202 SGVYWCVARNE  212 (238)
Q Consensus       202 ~G~Y~C~a~N~  212 (238)
                      +|.|.|-+...
T Consensus        83 sa~YyCa~~~~   93 (107)
T d1d5il1          83 MGIYYCLQYDE   93 (107)
T ss_dssp             CEEEEEEECSS
T ss_pred             CEEEEeeeccC
Confidence            99999976543

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.04  E-value=3.1e-05  Score=52.33  Aligned_cols=78  Identities=18%  Similarity=0.376  Sum_probs=49.9

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEEee-------------cc--CCccEEEe-cCCcEEEEEeec
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSLVS-------------AE--IGSHRILL-PAGSLFFLSLVH  195 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~l~-------------~~--~~~~~~~~-~~~~l~~~~vi~  195 (238)
                      +...|..+.+.+|++++|.|...+.....+.|++.  |..+.             ..  ...+.... .++.. ..+.|.
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~L~i~   82 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTL-STLTVT   82 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSE-EEEEEC
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccc-cccccc
Confidence            44556678889999999999987766778999973  22111             00  01122212 22222 233478


Q ss_pred             CCCCCCCeEEEEEEEeC
Q psy18191        196 GKKDTDSGVYWCVARNE  212 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~N~  212 (238)
                      .+..+|+|.|.|.+.-.
T Consensus        83 ~~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          83 SAHPEDSGFYVCSALAG   99 (118)
T ss_dssp             SCCGGGCEEEEEEEECS
T ss_pred             ccccccCceEEEEEecC
Confidence            88999999999988643

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.01  E-value=1.6e-05  Score=53.20  Aligned_cols=75  Identities=19%  Similarity=0.344  Sum_probs=46.3

Q ss_pred             CCCceEEeCCCcEEEEEEEeeeC--CCEEEEEeC--CEEee---cc-------CCc-cEEEec-CCcEEEEEeecCCCCC
Q psy18191        137 HPASAVVPRHEPTTLNCKADGYP--EPRIEWYKD--GSLVS---AE-------IGS-HRILLP-AGSLFFLSLVHGKKDT  200 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~--g~~l~---~~-------~~~-~~~~~~-~~~l~~~~vi~~v~~~  200 (238)
                      .|..+++.+|++++|.|...+..  ...+.|++.  +..+.   ..       ..+ ...... .++ ...+.|..++.+
T Consensus         6 QP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~i~~l~~~   84 (111)
T d1cd0a_           6 QPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSN-SASLTISGLKTE   84 (111)
T ss_dssp             CCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTT-EEEEEECSCCGG
T ss_pred             cCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCC-ccccccccCCcc
Confidence            35678899999999999976543  234899873  22111   00       011 122222 222 233347888999


Q ss_pred             CCeEEEEEEEeC
Q psy18191        201 DSGVYWCVARNE  212 (238)
Q Consensus       201 d~G~Y~C~a~N~  212 (238)
                      |+|.|.|.+.+.
T Consensus        85 Dsa~YyCA~~~~   96 (111)
T d1cd0a_          85 DEADYYCQSYDA   96 (111)
T ss_dssp             GCEEEEEEEEET
T ss_pred             cCcEEEEeeccC
Confidence            999999987654

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.00  E-value=4.3e-05  Score=51.32  Aligned_cols=89  Identities=18%  Similarity=0.211  Sum_probs=50.9

Q ss_pred             eCCCceEEeCCCcEEEEEEEee----eCCCEEEEEeC--CE----Eeec---------cC--CccEEEe----cCCcEEE
Q psy18191        136 EHPASAVVPRHEPTTLNCKADG----YPEPRIEWYKD--GS----LVSA---------EI--GSHRILL----PAGSLFF  190 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g----~P~p~i~W~~~--g~----~l~~---------~~--~~~~~~~----~~~~l~~  190 (238)
                      ..|..+.+..|++++|.|....    .....+.|++.  +.    .+..         ..  ...+..+    ..+... 
T Consensus         4 ~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s-   82 (119)
T d1neua_           4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGS-   82 (119)
T ss_dssp             ECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCC-
T ss_pred             cCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEE-
Confidence            4567788899999999998642    23347999862  11    1110         00  0112221    112111 


Q ss_pred             EEeecCCCCCCCeEEEEEEEeCCCce-eEEEEEEEEc
Q psy18191        191 LSLVHGKKDTDSGVYWCVARNELGFA-RSKNATLDVA  226 (238)
Q Consensus       191 ~~vi~~v~~~d~G~Y~C~a~N~~G~~-~s~~~~L~V~  226 (238)
                       +.|.+++.+|+|.|.|.+.+..+.. ....++|.|.
T Consensus        83 -L~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          83 -IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             -EEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             -EEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence             2277779999999999999865322 2236778774

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.98  E-value=1.8e-05  Score=53.18  Aligned_cols=80  Identities=21%  Similarity=0.323  Sum_probs=49.0

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEee-eCCCEEEEEeC--CEE---eec-c-C-------CccEEEe-cCCcEEEEEeecCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADG-YPEPRIEWYKD--GSL---VSA-E-I-------GSHRILL-PAGSLFFLSLVHGK  197 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g-~P~p~i~W~~~--g~~---l~~-~-~-------~~~~~~~-~~~~l~~~~vi~~v  197 (238)
                      ++..|..+.+.+|++++|.|.... .....+.|++.  +..   +.. . .       ....... ..+.. ..+.|..+
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~I~~~   81 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSS-FNFTITAS   81 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTE-EEEEESSC
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCE-EEEeeccc
Confidence            445567788999999999998653 34456899972  211   110 0 0       0111211 22322 23347889


Q ss_pred             CCCCCeEEEEEEEeCCC
Q psy18191        198 KDTDSGVYWCVARNELG  214 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N~~G  214 (238)
                      ..+|+|.|.|.+....+
T Consensus        82 ~~~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          82 QVVDSAVYFCALSGFYN   98 (114)
T ss_dssp             CGGGCEEEEEEEECSBT
T ss_pred             ccccCCCceEeCCCCCC
Confidence            99999999998776543

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.98  E-value=1.7e-05  Score=52.31  Aligned_cols=74  Identities=22%  Similarity=0.431  Sum_probs=45.6

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEEe---ecc-------CCccEEEecCCcEEEEEeecCCCCCCCeEE
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSLV---SAE-------IGSHRILLPAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~l---~~~-------~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                      |..+.+.+|++++|.|.........+.|++.  |..+   ...       .........+.+.. .+.|..++.+|+|.|
T Consensus         5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~I~~l~~~Dsa~Y   83 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTV-TLTISGVQAEDEADY   83 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEE-EEEETTCCGGGCEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCcc-CceEcCcchhHCceE
Confidence            3467889999999999876655567899973  2111   110       01111111222322 223789999999999


Q ss_pred             EEEEEeC
Q psy18191        206 WCVARNE  212 (238)
Q Consensus       206 ~C~a~N~  212 (238)
                      .|-+.+.
T Consensus        84 yCA~~~~   90 (103)
T d8faba1          84 YCQAWDN   90 (103)
T ss_dssp             EEEEEET
T ss_pred             EeeecCC
Confidence            9976643

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.98  E-value=5e-06  Score=54.63  Aligned_cols=82  Identities=23%  Similarity=0.279  Sum_probs=51.5

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCC--CEEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeecCCCCCCCeEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPE--PRIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      .+|.+...+.. .+..|+..+|.|.+.|.-+  ..++|++||..+..... .......+|+......+. +..++.+.|+
T Consensus         2 ~pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~-v~~~~~~~yt   79 (100)
T d1muja1           2 EAPQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLT-FIPSDDDIYD   79 (100)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEE-ECCCTTCCEE
T ss_pred             CCCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeE-EcCCCCCEEE
Confidence            36777665432 3456889999999999733  57999999988763210 111223455555444332 2456667899


Q ss_pred             EEEEeCC
Q psy18191        207 CVARNEL  213 (238)
Q Consensus       207 C~a~N~~  213 (238)
                      |.+.-..
T Consensus        80 C~V~H~s   86 (100)
T d1muja1          80 CKVEHWG   86 (100)
T ss_dssp             EEEECTT
T ss_pred             EEEEECC
Confidence            9998643

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.98  E-value=3e-05  Score=50.39  Aligned_cols=91  Identities=16%  Similarity=0.135  Sum_probs=55.1

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      +|.+...| ...+..|++++|.|... .....+.++|+|......  ........+.......|..++..|+|.|.|...
T Consensus         2 KPsLsa~P-~~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~--~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~   77 (96)
T d1nkra1           2 KPSLLAHP-GPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTL--RLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS   77 (96)
T ss_dssp             CCEEEEES-CSEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEE--EEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEeeC-CCccCCCCcEEEEECCC-CCCCEEEEEECCCcCCce--eeeeeecCCceEEEEEEcccCcccCeEEEEEEE
Confidence            57777766 46678999999999863 234568888877432110  001111222222223377889999999999876


Q ss_pred             eCC----CceeEEEEEEEE
Q psy18191        211 NEL----GFARSKNATLDV  225 (238)
Q Consensus       211 N~~----G~~~s~~~~L~V  225 (238)
                      ...    .+..|+.+.|.|
T Consensus        78 ~~~~p~~wS~pSdpLeL~V   96 (96)
T d1nkra1          78 VTHSPYQVSAPSDPLDIVI   96 (96)
T ss_dssp             BTTBTTCCCCCCCCEEEEE
T ss_pred             cCCCCCcccCCCCCEEEEC
Confidence            432    233355666654

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.97  E-value=4.7e-05  Score=50.76  Aligned_cols=76  Identities=21%  Similarity=0.355  Sum_probs=47.8

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CE---Eeec-c-------CCccEEEec-CCcEEEEEeecCCCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GS---LVSA-E-------IGSHRILLP-AGSLFFLSLVHGKKDT  200 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~---~l~~-~-------~~~~~~~~~-~~~l~~~~vi~~v~~~  200 (238)
                      ...|..+.+.+|++++|.|...+.....+.|++.  |.   .+.. .       ......... .+.. ..+.|..+..+
T Consensus         4 ~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~I~~~~~~   82 (111)
T d1bd2d1           4 KQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKH-LSLHIVPSQPG   82 (111)
T ss_dssp             ECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTE-EEEEESSCCGG
T ss_pred             EccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCE-EEEEECCCccc
Confidence            3456678889999999999977666678999972  21   1110 0       011111111 2222 23337899999


Q ss_pred             CCeEEEEEEEe
Q psy18191        201 DSGVYWCVARN  211 (238)
Q Consensus       201 d~G~Y~C~a~N  211 (238)
                      |+|.|.|-+..
T Consensus        83 Dsa~YyCa~~~   93 (111)
T d1bd2d1          83 DSAVYFCAAME   93 (111)
T ss_dssp             GCEEEEEEEES
T ss_pred             ccEEEEeeccC
Confidence            99999997763

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.97  E-value=2.5e-05  Score=52.11  Aligned_cols=76  Identities=21%  Similarity=0.457  Sum_probs=46.9

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEEe---e-cc---------CCccE-EEecCCcEEEEEeecCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSLV---S-AE---------IGSHR-ILLPAGSLFFLSLVHGK  197 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~l---~-~~---------~~~~~-~~~~~~~l~~~~vi~~v  197 (238)
                      +...|..+.+.+|++++|.|...+ ....+.|++.  |..+   . ..         ....+ .....+.. ....|..+
T Consensus         4 V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~I~~~   81 (110)
T d2aq2a1           4 VTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQ-FSLILESA   81 (110)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTE-EEEEESSC
T ss_pred             EEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCE-EEEEECCC
Confidence            455577788899999999998754 3568999982  2111   1 00         01111 11111222 22237888


Q ss_pred             CCCCCeEEEEEEEe
Q psy18191        198 KDTDSGVYWCVARN  211 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N  211 (238)
                      ..+|+|.|.|-+..
T Consensus        82 ~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          82 TPSQTSVYFCASGG   95 (110)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CHhhCEEEEEeeCC
Confidence            99999999997764

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.97  E-value=1.7e-05  Score=52.78  Aligned_cols=76  Identities=22%  Similarity=0.362  Sum_probs=47.1

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEE---eecc--------CCccEEEecCCcEEEEEeecCCCCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSL---VSAE--------IGSHRILLPAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~---l~~~--------~~~~~~~~~~~~l~~~~vi~~v~~~d  201 (238)
                      ...|..+.+.+|+.++|.|...+.....+.|++.  |..   +...        ................+.|..+..+|
T Consensus         3 ~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (110)
T d1u3ha1           3 RQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGD   82 (110)
T ss_dssp             ECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTS
T ss_pred             EecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCC
Confidence            3456778899999999999976555557999973  211   1100        01111111111112333488999999


Q ss_pred             CeEEEEEEE
Q psy18191        202 SGVYWCVAR  210 (238)
Q Consensus       202 ~G~Y~C~a~  210 (238)
                      +|.|.|-+.
T Consensus        83 sa~YyCa~~   91 (110)
T d1u3ha1          83 SATYFCAAS   91 (110)
T ss_dssp             CSEEEECCE
T ss_pred             ceeEeeeec
Confidence            999999876

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=4.7e-05  Score=50.43  Aligned_cols=73  Identities=18%  Similarity=0.283  Sum_probs=43.8

Q ss_pred             CceEEeCCCcEEEEEEEeeeC--CCEEEEEeCC--EE---ee-cc------CCccEEE-e--cCCcEEEEEeecCCCCCC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYP--EPRIEWYKDG--SL---VS-AE------IGSHRIL-L--PAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~g--~~---l~-~~------~~~~~~~-~--~~~~l~~~~vi~~v~~~d  201 (238)
                      ..+...+|++++|.|......  ...+.|+|..  ..   +. ..      ...+... .  ..+.+.+  .|..++.+|
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L--~I~~l~~~D   81 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTV--TMTDLREED   81 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEE--EECSCCGGG
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEE--EEhhhCCCC
Confidence            346788999999999864332  3467898732  11   11 00      0112211 1  2333333  378899999


Q ss_pred             CeEEEEEEEeCC
Q psy18191        202 SGVYWCVARNEL  213 (238)
Q Consensus       202 ~G~Y~C~a~N~~  213 (238)
                      +|.|.|......
T Consensus        82 sG~Y~C~v~~~~   93 (108)
T d1hkfa_          82 SGHYWCRIYRPS   93 (108)
T ss_dssp             CEEEEEEEECTT
T ss_pred             CEEEEEEEecCC
Confidence            999999877544

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.96  E-value=5.2e-05  Score=50.37  Aligned_cols=77  Identities=21%  Similarity=0.372  Sum_probs=48.4

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--C---EEeecc-------CCccEEEecCCcEEEEEeecCCCCCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--G---SLVSAE-------IGSHRILLPAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g---~~l~~~-------~~~~~~~~~~~~l~~~~vi~~v~~~d  201 (238)
                      ++..|..+.+.+|+.++|.|...+.-...+.|++.  |   ..|...       ...+.....++.... +.|..++.+|
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~-L~I~~l~~~D   84 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYT-FTISSLQPED   84 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEE-EEESSCCGGG
T ss_pred             EEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeE-EEEeeceeCc
Confidence            34456678899999999999987665667899972  1   111110       111222222223222 2378889999


Q ss_pred             CeEEEEEEEe
Q psy18191        202 SGVYWCVARN  211 (238)
Q Consensus       202 ~G~Y~C~a~N  211 (238)
                      +|.|.|-+..
T Consensus        85 sa~YyCA~~~   94 (109)
T d1bwwa_          85 IATYYCQQYQ   94 (109)
T ss_dssp             CEEEEEEECS
T ss_pred             CceEEEeecC
Confidence            9999997654

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.5e-05  Score=51.47  Aligned_cols=75  Identities=23%  Similarity=0.312  Sum_probs=47.1

Q ss_pred             ceEEeCCCcEEEEEEEeeeC----CCEEEEEeCCEEeeccC----------CccEEEecCCcEEEEEeecCCCCCCCeEE
Q psy18191        140 SAVVPRHEPTTLNCKADGYP----EPRIEWYKDGSLVSAEI----------GSHRILLPAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P----~p~i~W~~~g~~l~~~~----------~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                      .++...|+++.|.|......    ...+.|.+++..+....          ..+......+...+  .|..++.+|+|.|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL--~I~~v~~~D~G~Y   80 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSI--VILALRPSDEGTY   80 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEE--EECSCCGGGCEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEE--EECcCChHHCeEE
Confidence            36778999999999764322    24578888776542210          11122222343332  2778899999999


Q ss_pred             EEEEEeCCCce
Q psy18191        206 WCVARNELGFA  216 (238)
Q Consensus       206 ~C~a~N~~G~~  216 (238)
                      .|...+..+..
T Consensus        81 ~C~V~~~~~~~   91 (105)
T d1dr9a1          81 ECVVLKYEKDA   91 (105)
T ss_dssp             EEEEEECCTTS
T ss_pred             EEEEEeCCCCC
Confidence            99998764443

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.93  E-value=2.9e-05  Score=52.11  Aligned_cols=79  Identities=20%  Similarity=0.371  Sum_probs=48.0

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEe-eeCCCEEEEEeC--CEEee----cc--C------CccEEEec-CCcEEEEEeecCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKD--GSLVS----AE--I------GSHRILLP-AGSLFFLSLVHGK  197 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~-g~P~p~i~W~~~--g~~l~----~~--~------~~~~~~~~-~~~l~~~~vi~~v  197 (238)
                      ++..|..+.+.+|++++|.|... +.....+.|++.  |..+.    ..  .      ........ .+.. ..+.|..+
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~I~~~   80 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSS-IGLIITAT   80 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTE-EEEEECSC
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCE-EEEEECCC
Confidence            34556778899999999999864 344567899972  21111    00  0      11112111 1222 22337888


Q ss_pred             CCCCCeEEEEEEEeCC
Q psy18191        198 KDTDSGVYWCVARNEL  213 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N~~  213 (238)
                      +.+|+|.|.|.+....
T Consensus        81 ~~~Dsa~YyCa~~~~~   96 (115)
T d1fo0a_          81 QIEDSAVYFCAMRGDY   96 (115)
T ss_dssp             CGGGCEEEEEEEECCC
T ss_pred             CccccccccceeecCC
Confidence            9999999999876543

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.92  E-value=4.8e-05  Score=50.60  Aligned_cols=75  Identities=23%  Similarity=0.402  Sum_probs=47.2

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CE---Eeecc-------CCccEEEecCCcEEEEEeecCCCCCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GS---LVSAE-------IGSHRILLPAGSLFFLSLVHGKKDTDS  202 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~---~l~~~-------~~~~~~~~~~~~l~~~~vi~~v~~~d~  202 (238)
                      +..|..+.+.+|++++|.|.........+.|++.  +.   .|...       .........++.- ..+.|..+..+|+
T Consensus         5 tQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~-~~L~I~~~~~~DS   83 (109)
T d1mqkl_           5 TQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQ-FSLKINSLLPEDF   83 (109)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTE-EEEEESSCCGGGC
T ss_pred             ECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCE-EEEEEccccccCC
Confidence            4456778889999999999976555667999972  21   11110       0111111112222 2234788999999


Q ss_pred             eEEEEEEE
Q psy18191        203 GVYWCVAR  210 (238)
Q Consensus       203 G~Y~C~a~  210 (238)
                      |.|.|-+.
T Consensus        84 a~YyCA~~   91 (109)
T d1mqkl_          84 GSYYCQHH   91 (109)
T ss_dssp             EEEEEEEC
T ss_pred             eeEEEeee
Confidence            99999765

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.92  E-value=5.2e-05  Score=50.92  Aligned_cols=92  Identities=16%  Similarity=0.292  Sum_probs=53.3

Q ss_pred             eCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEE---ee-cc-------CCccEEEecCCcEEEEEeecCCCCCCC
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSL---VS-AE-------IGSHRILLPAGSLFFLSLVHGKKDTDS  202 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~---l~-~~-------~~~~~~~~~~~~l~~~~vi~~v~~~d~  202 (238)
                      ..|..+.+.+|++++|.|...+. ...+.|++.  |..   +. ..       ................+.|..+..+|+
T Consensus         5 Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (115)
T d1ogad1           5 QSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDT   83 (115)
T ss_dssp             EECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGC
T ss_pred             eCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccce
Confidence            34667889999999999987553 357999972  211   10 00       011122222222223334889999999


Q ss_pred             eEEEEEEEeCCCce-eEEEEEEEEccC
Q psy18191        203 GVYWCVARNELGFA-RSKNATLDVAGK  228 (238)
Q Consensus       203 G~Y~C~a~N~~G~~-~s~~~~L~V~~~  228 (238)
                      |.|.|-+....+.. --.-..|.|.+.
T Consensus        84 a~YyCa~~~~~~~~~FG~GT~LtV~~~  110 (115)
T d1ogad1          84 GLYLCAGAGSQGNLIFGKGTKLSVKPN  110 (115)
T ss_dssp             EEEEEEEECTTSSEEECCCEEEEEECC
T ss_pred             eeEcccccCCCCCcEECCCEEEEEecC
Confidence            99999877443321 011336777643

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.2e-05  Score=54.11  Aligned_cols=77  Identities=16%  Similarity=0.238  Sum_probs=47.7

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeee-CCCEEEEEeCC----E-E--ee-cc---------C-CccEEEecCCcEEEEEee
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGY-PEPRIEWYKDG----S-L--VS-AE---------I-GSHRILLPAGSLFFLSLV  194 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~-P~p~i~W~~~g----~-~--l~-~~---------~-~~~~~~~~~~~l~~~~vi  194 (238)
                      +...|.+.++.+|++++|.|...+. ....+.|++..    . .  +. ..         . ..+......+.. ..+.|
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~-~~L~I   81 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDT-FVLTL   81 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTE-EEEEE
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCC-hhcEE
Confidence            4456788889999999999997554 34569999831    1 1  11 00         0 011111112221 22347


Q ss_pred             cCCCCCCCeEEEEEEEe
Q psy18191        195 HGKKDTDSGVYWCVARN  211 (238)
Q Consensus       195 ~~v~~~d~G~Y~C~a~N  211 (238)
                      ..+..+|+|.|.|-+..
T Consensus        82 ~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          82 SDFRRENEGYYFCSALS   98 (114)
T ss_dssp             SSCCGGGCEEEEEEEEE
T ss_pred             ccCCCCCCEEEeEeEcC
Confidence            88999999999998764

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.90  E-value=4.1e-05  Score=50.84  Aligned_cols=76  Identities=22%  Similarity=0.434  Sum_probs=46.4

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeee-CCCEEEEEeC--CE---Eeecc-------CCccEEEecCCcEEEEEeecCCCCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGY-PEPRIEWYKD--GS---LVSAE-------IGSHRILLPAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~-P~p~i~W~~~--g~---~l~~~-------~~~~~~~~~~~~l~~~~vi~~v~~~d  201 (238)
                      +..|..+.+.+|++++|.|...+. ....+.|++.  |.   .|...       ..........++. ..+.|..+..+|
T Consensus         5 tQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~-~~L~I~~~~~~D   83 (108)
T d2fx7l1           5 TQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTD-FTLTISRLEPED   83 (108)
T ss_dssp             ECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTE-EEEEESSCCGGG
T ss_pred             EeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCE-EEEEehHheecc
Confidence            345677889999999999987543 3446889973  22   22111       0111111112222 223478899999


Q ss_pred             CeEEEEEEEe
Q psy18191        202 SGVYWCVARN  211 (238)
Q Consensus       202 ~G~Y~C~a~N  211 (238)
                      +|.|.|-+.+
T Consensus        84 sa~YyCa~~~   93 (108)
T d2fx7l1          84 FAVYYCQQYG   93 (108)
T ss_dssp             CSEEEEEECS
T ss_pred             cEEEeeecCC
Confidence            9999997653

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=7.9e-05  Score=48.08  Aligned_cols=78  Identities=19%  Similarity=0.255  Sum_probs=50.3

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccC--CccEEEecCCcEEEEEeecCCCCCCCeEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEI--GSHRILLPAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~--~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                      +||.+..    .....++.++|.|.+.|. |. ..++|++||..+....  ........+++......+. +...+...|
T Consensus         3 vpP~V~v----~~~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~-v~~~~~~~y   77 (94)
T d1de4a1           3 VPPLVKV----THHVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLA-VPPGEEQRY   77 (94)
T ss_dssp             BCCEEEE----EEEECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEE-ECTTCGGGE
T ss_pred             CCCEEEE----EEcCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEE-ECCCCCCEE
Confidence            5777754    222356788999999995 54 3799999999986431  1223334455554443332 255566689


Q ss_pred             EEEEEeC
Q psy18191        206 WCVARNE  212 (238)
Q Consensus       206 ~C~a~N~  212 (238)
                      +|.+...
T Consensus        78 tC~V~H~   84 (94)
T d1de4a1          78 TCQVEHP   84 (94)
T ss_dssp             EEEEECT
T ss_pred             EEEEEeC
Confidence            9999875

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=4.2e-05  Score=50.70  Aligned_cols=84  Identities=19%  Similarity=0.245  Sum_probs=45.1

Q ss_pred             eEEeCCCcEEEEEEEeeeC---CCEEEE--EeCCEEe-ecc------------CCccEEEecCCcEEEEEeecCCCCCCC
Q psy18191        141 AVVPRHEPTTLNCKADGYP---EPRIEW--YKDGSLV-SAE------------IGSHRILLPAGSLFFLSLVHGKKDTDS  202 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~~g~P---~p~i~W--~~~g~~l-~~~------------~~~~~~~~~~~~l~~~~vi~~v~~~d~  202 (238)
                      +.+..|+++.|.|.....+   ...+.|  .++...+ ...            ....+.....+...+  .|++++.+|+
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL--~I~~v~~~D~   81 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTL--RLHNLQIKDK   81 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEE--EECSCCGGGC
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEE--EECCCChhHC
Confidence            5678899999999875322   222444  3433211 100            001111122222222  2777899999


Q ss_pred             eEEEEEEEeCC--Cce--eEEEEEEEEc
Q psy18191        203 GVYWCVARNEL--GFA--RSKNATLDVA  226 (238)
Q Consensus       203 G~Y~C~a~N~~--G~~--~s~~~~L~V~  226 (238)
                      |.|.|.....-  |..  ....+.|.|.
T Consensus        82 G~Y~C~V~~~~~~~~~~~~~~~~~L~V~  109 (110)
T d1ncna_          82 GLYQCIIHHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             EEEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             EEEEEEEEecCCCceEEEEcceEEEEEE
Confidence            99999986443  432  1236667664

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=4.1e-06  Score=54.69  Aligned_cols=92  Identities=20%  Similarity=0.320  Sum_probs=55.5

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      -+|.+...|. ..+..|++++|.|... .+.-.+..+|+|..................+.    |..++.+|+|.|.|..
T Consensus         3 PkP~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~----i~~v~~~~~G~Y~C~y   76 (96)
T d1ugna1           3 PKPTLWAEPG-SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFP----IPSITWEHTGRYRCYY   76 (96)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEE----ESSCCGGGCEEEEEEE
T ss_pred             CCCEEEeECC-CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEE----EEecCHHHCCeEEEEE
Confidence            4677777665 4578999999999863 34456777888753321000000000112232    6777999999999987


Q ss_pred             EeCC-C-ceeEEEEEEEEcc
Q psy18191        210 RNEL-G-FARSKNATLDVAG  227 (238)
Q Consensus       210 ~N~~-G-~~~s~~~~L~V~~  227 (238)
                      .... + +..|+.+.|.|.+
T Consensus        77 ~~~~~~~S~~Sd~leL~VtG   96 (96)
T d1ugna1          77 GSDTAGRSESSDPLELVVTG   96 (96)
T ss_dssp             EETTTEECCCCCCEEEEEEC
T ss_pred             eCCCCCccccCCCEEEEEeC
Confidence            6432 1 3345566776643

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.84  E-value=2.5e-05  Score=50.97  Aligned_cols=82  Identities=18%  Similarity=0.356  Sum_probs=48.7

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC--EEEEEeCCEEeeccC-CccEEEecCCcEEEEEeecCCCCCCCeEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEP--RIEWYKDGSLVSAEI-GSHRILLPAGSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~-~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      ++|.+...+.. ....++...|.|.+.|..++  .++|++||..+.... ........+|+......+.. ...+...|+
T Consensus         3 V~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~-~~~~~~~yt   80 (98)
T d1d5mb1           3 VYPEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLET-VPRSGEVYT   80 (98)
T ss_dssp             BCCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEEC-CCCTTCEEE
T ss_pred             CCCEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeE-cCCCCCEEE
Confidence            45666654332 23346677899999986443  699999998875421 11122344667766555443 566777999


Q ss_pred             EEEEeCC
Q psy18191        207 CVARNEL  213 (238)
Q Consensus       207 C~a~N~~  213 (238)
                      |.+....
T Consensus        81 C~V~H~s   87 (98)
T d1d5mb1          81 CQVEHPS   87 (98)
T ss_dssp             EEEECTT
T ss_pred             EEEEECC
Confidence            9998754

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.83  E-value=0.00011  Score=48.78  Aligned_cols=72  Identities=15%  Similarity=0.296  Sum_probs=43.2

Q ss_pred             CceEEeCCCcEEEEEEEeeeCC---CEEEEEeC--CEEeec----------cCCccEEEecCCcEEEEEeecCCCCCCCe
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPE---PRIEWYKD--GSLVSA----------EIGSHRILLPAGSLFFLSLVHGKKDTDSG  203 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~---p~i~W~~~--g~~l~~----------~~~~~~~~~~~~~l~~~~vi~~v~~~d~G  203 (238)
                      ..+.+.+|++++|.|...+...   -.+.|++.  |..+..          ...++......++- ..+.|..+..+|+|
T Consensus         8 ~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~-~~L~I~~~~~~Dsa   86 (110)
T d1oaql_           8 SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNK-AALTITGAQTEDEA   86 (110)
T ss_dssp             SEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTE-EEEEEESCCGGGCE
T ss_pred             CCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccc-eeeecCCCCccccE
Confidence            3678899999999999864332   23889862  222110          01122111112222 22347888999999


Q ss_pred             EEEEEEEe
Q psy18191        204 VYWCVARN  211 (238)
Q Consensus       204 ~Y~C~a~N  211 (238)
                      .|.|.+..
T Consensus        87 ~YyCa~~~   94 (110)
T d1oaql_          87 IYFCALWY   94 (110)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEccc
Confidence            99998765

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.83  E-value=2.8e-05  Score=51.02  Aligned_cols=83  Identities=18%  Similarity=0.247  Sum_probs=51.3

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeecCCCCCCCeEE
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                      ..+|.+...+.. ....|+..+|.|.+.|. |. -.++|++||..+..+.. .......+|+......+.. ...+...|
T Consensus         3 ~v~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v-~~~~~~~y   80 (101)
T d1fnga1           3 NVAPEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTF-LPSTDDFY   80 (101)
T ss_dssp             CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEE-CCCTTCCE
T ss_pred             CcCCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEE-cCCCCCEE
Confidence            367777664322 23567888999999987 43 47999999998864211 1112234556554443321 34455679


Q ss_pred             EEEEEeCC
Q psy18191        206 WCVARNEL  213 (238)
Q Consensus       206 ~C~a~N~~  213 (238)
                      +|.+.-..
T Consensus        81 tC~V~H~s   88 (101)
T d1fnga1          81 DCEVDHWG   88 (101)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEECC
Confidence            99998653

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.83  E-value=8.5e-05  Score=49.75  Aligned_cols=70  Identities=20%  Similarity=0.319  Sum_probs=44.1

Q ss_pred             ceEEeCCCcEEEEEEEeeeC--CCEEEEEeCC--E---Eeecc-------CCccEEEe-cCCcEEEEEeecCCCCCCCeE
Q psy18191        140 SAVVPRHEPTTLNCKADGYP--EPRIEWYKDG--S---LVSAE-------IGSHRILL-PAGSLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~g--~---~l~~~-------~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~  204 (238)
                      ++.+.+|++++|.|.+.+.-  ...+.|++..  .   .+...       ...+.... .+...  .+.|..++.+|++.
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~DsA~   86 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSA--SLAISGLESEDEAD   86 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEE--EEEESSCCGGGCEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCee--eeEecccCcccCce
Confidence            57788999999999976543  4679999732  1   11110       01122221 22222  33478999999999


Q ss_pred             EEEEEEe
Q psy18191        205 YWCVARN  211 (238)
Q Consensus       205 Y~C~a~N  211 (238)
                      |.|-+..
T Consensus        87 YyCA~~~   93 (114)
T d2rhea_          87 YYCAAWN   93 (114)
T ss_dssp             EEEEEEE
T ss_pred             EEEeecC
Confidence            9998764

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=7.6e-05  Score=48.16  Aligned_cols=80  Identities=16%  Similarity=0.280  Sum_probs=49.0

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC--EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEP--RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      .||.+...   .....|+.++|.|.+.|.-++  .|+|++||..+............+++......+. +...+...|+|
T Consensus         2 ~PP~V~v~---~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~-~~~~~~~~ytC   77 (94)
T d1t7va1           2 DPPSVVVT---SHQAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVA-VPPQDTAPYSC   77 (94)
T ss_dssp             BCCEEEEE---EEECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEE-ECTTCCSCEEE
T ss_pred             cCCEeEEe---ccCCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeE-eCCCCCCEEEE
Confidence            46666542   122457899999999996443  6999999987753211112223345555444332 24556668999


Q ss_pred             EEEeCC
Q psy18191        208 VARNEL  213 (238)
Q Consensus       208 ~a~N~~  213 (238)
                      .+.-..
T Consensus        78 ~V~H~s   83 (94)
T d1t7va1          78 HVQHSS   83 (94)
T ss_dssp             EEEETT
T ss_pred             EEEECC
Confidence            998654

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.81  E-value=3.1e-05  Score=51.34  Aligned_cols=75  Identities=16%  Similarity=0.262  Sum_probs=46.9

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEEe---ecc------CC-ccE-EEecCCcEEEEEeecCCCCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSLV---SAE------IG-SHR-ILLPAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~l---~~~------~~-~~~-~~~~~~~l~~~~vi~~v~~~  200 (238)
                      ++..|..+.+.+|++++|.|.........+.|++.  |..+   ...      .. ... .......  ..+.|..++.+
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~--~~L~I~~~~~~   81 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTD--YSLTISNLEPE   81 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTE--EEEECSCCCSC
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCE--EEEEEeEeeec
Confidence            34456778889999999999976666667999973  2211   100      00 111 1111222  23347888999


Q ss_pred             CCeEEEEEEE
Q psy18191        201 DSGVYWCVAR  210 (238)
Q Consensus       201 d~G~Y~C~a~  210 (238)
                      |+|.|.|-+.
T Consensus        82 Dsa~YyCa~~   91 (107)
T d3cx5k1          82 DIATYFCQHH   91 (107)
T ss_dssp             CCSEEEEEEC
T ss_pred             CCCcEEeeeC
Confidence            9999999654

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.78  E-value=0.00015  Score=48.37  Aligned_cols=75  Identities=17%  Similarity=0.305  Sum_probs=45.0

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeC-----CCEEEEEeC--CEEe---ecc-------CCccEEE-ecCCcEEEEEeecC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYP-----EPRIEWYKD--GSLV---SAE-------IGSHRIL-LPAGSLFFLSLVHG  196 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P-----~p~i~W~~~--g~~l---~~~-------~~~~~~~-~~~~~l~~~~vi~~  196 (238)
                      +..|..+.+.+|++++|.|...+..     ...+.|++.  |..+   ...       ....... ..+...  .+.|..
T Consensus         5 TQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~--~L~I~~   82 (112)
T d1ncwl1           5 TQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDF--TLKISR   82 (112)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEE--EEEESS
T ss_pred             eCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEE--EEEECc
Confidence            3456778899999999999864322     245889863  2211   100       0111111 122222  233788


Q ss_pred             CCCCCCeEEEEEEEe
Q psy18191        197 KKDTDSGVYWCVARN  211 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N  211 (238)
                      +..+|+|.|.|...+
T Consensus        83 ~~~eDsAvYYC~~~~   97 (112)
T d1ncwl1          83 VEAEDLGVYYCWQGT   97 (112)
T ss_dssp             CCGGGCEEEEEEECS
T ss_pred             cccCcCEeEEEEcCC
Confidence            999999999996543

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.77  E-value=0.00017  Score=47.99  Aligned_cols=74  Identities=19%  Similarity=0.347  Sum_probs=44.6

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeC-----CCEEEEEeC--CEE---eecc------C-CccEEEecCCcEEEEEeecCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYP-----EPRIEWYKD--GSL---VSAE------I-GSHRILLPAGSLFFLSLVHGK  197 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P-----~p~i~W~~~--g~~---l~~~------~-~~~~~~~~~~~l~~~~vi~~v  197 (238)
                      +..|..+.+.+|++++|.|...+..     ...+.|++.  |..   +...      . ..+......+.. ..+.|..+
T Consensus         5 TQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~-~~L~Is~~   83 (112)
T d1mjul1           5 TQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTA-FTLRISRV   83 (112)
T ss_dssp             ECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSE-EEEEESSC
T ss_pred             EecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCE-EEEEECCc
Confidence            3446678889999999999875531     345899863  221   1110      0 111222222222 23347899


Q ss_pred             CCCCCeEEEEEE
Q psy18191        198 KDTDSGVYWCVA  209 (238)
Q Consensus       198 ~~~d~G~Y~C~a  209 (238)
                      +.+|++.|.|-.
T Consensus        84 ~~~DsAvYyCa~   95 (112)
T d1mjul1          84 EAEDVGVYYCLQ   95 (112)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             cccCCceEEEEe
Confidence            999999999943

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.77  E-value=0.00015  Score=48.96  Aligned_cols=76  Identities=22%  Similarity=0.426  Sum_probs=46.7

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeC--CCEEEEEeC--CE---Eeecc-------CCccE-EEe-cCCcEEEEEeecCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYP--EPRIEWYKD--GS---LVSAE-------IGSHR-ILL-PAGSLFFLSLVHGKK  198 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~--g~---~l~~~-------~~~~~-~~~-~~~~l~~~~vi~~v~  198 (238)
                      ...+..+.+.+|++++|.|...+..  ...+.|++.  |.   .|...       ..++. ... ...+. ..+.|..++
T Consensus         5 v~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~-~~L~i~~~~   83 (120)
T d1hxma1           5 VPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNL-AVLKILAPS   83 (120)
T ss_dssp             EESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTE-EEEEESSCC
T ss_pred             eccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccc-eeccccccc
Confidence            3445677889999999999987654  357999972  21   11110       01111 111 12222 233478899


Q ss_pred             CCCCeEEEEEEEe
Q psy18191        199 DTDSGVYWCVARN  211 (238)
Q Consensus       199 ~~d~G~Y~C~a~N  211 (238)
                      .+|+|.|.|-...
T Consensus        84 ~~Dsa~YyCA~~~   96 (120)
T d1hxma1          84 ERDEGSYYCACDT   96 (120)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ccCCceeecCccc
Confidence            9999999997654

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.76  E-value=0.0002  Score=47.63  Aligned_cols=77  Identities=23%  Similarity=0.382  Sum_probs=45.6

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeee-C---CCEEEEEeC--CEEe---ecc-------CCccEEEecCCcEEEEEeecCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGY-P---EPRIEWYKD--GSLV---SAE-------IGSHRILLPAGSLFFLSLVHGKK  198 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~-P---~p~i~W~~~--g~~l---~~~-------~~~~~~~~~~~~l~~~~vi~~v~  198 (238)
                      +..|..+.+.+|++++|.|...+. .   ...+.|++.  |..+   ...       ...+......+.. ..+.|..+.
T Consensus         5 tQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~-~~L~I~~~~   83 (111)
T d2gsia1           5 TQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTD-FTLNIHPVE   83 (111)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTE-EEEEESSCC
T ss_pred             EeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCc-hhccccccc
Confidence            345677889999999999986432 1   234899873  2111   110       0112222212222 223478889


Q ss_pred             CCCCeEEEEEEEeC
Q psy18191        199 DTDSGVYWCVARNE  212 (238)
Q Consensus       199 ~~d~G~Y~C~a~N~  212 (238)
                      .+|+|.|.|-+...
T Consensus        84 ~~DsA~YyCa~~~~   97 (111)
T d2gsia1          84 EEDAATYYCSHIRE   97 (111)
T ss_dssp             GGGCEEEEEEECSS
T ss_pred             ccCCceEEEEECCC
Confidence            99999999976543

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.76  E-value=7.1e-05  Score=49.93  Aligned_cols=75  Identities=19%  Similarity=0.337  Sum_probs=46.1

Q ss_pred             CCCceEEeCCCcEEEEEEEeeeC-CCEEEEEeC--CEEee---cc------CCccEEEecCCcEEEEEeecCCCCCCCeE
Q psy18191        137 HPASAVVPRHEPTTLNCKADGYP-EPRIEWYKD--GSLVS---AE------IGSHRILLPAGSLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~P-~p~i~W~~~--g~~l~---~~------~~~~~~~~~~~~l~~~~vi~~v~~~d~G~  204 (238)
                      .|..+.+.+|++++|.|...+.. ...+.|++.  |..+.   ..      ....+.......-...+.|..+..+|+|.
T Consensus         4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~   83 (112)
T d1kgcd1           4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAV   83 (112)
T ss_dssp             CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeeccccccee
Confidence            45678889999999999976544 456999983  22111   10      11122222222222233478889999999


Q ss_pred             EEEEEEe
Q psy18191        205 YWCVARN  211 (238)
Q Consensus       205 Y~C~a~N  211 (238)
                      |.|.+..
T Consensus        84 YyCa~~~   90 (112)
T d1kgcd1          84 YYCILPL   90 (112)
T ss_dssp             EEEECCC
T ss_pred             EeeeEec
Confidence            9997643

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.76  E-value=6.9e-05  Score=50.06  Aligned_cols=75  Identities=17%  Similarity=0.224  Sum_probs=45.1

Q ss_pred             eCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEEee--c-----------cCCccEEEecCCcEEEEEeecCCCCC
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSLVS--A-----------EIGSHRILLPAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~l~--~-----------~~~~~~~~~~~~~l~~~~vi~~v~~~  200 (238)
                      ..|..+.+.+|+.++|.|...+ ....+.|++.  |..+.  .           .................+.|..+..+
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (113)
T d2ntsp1           4 QTPRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELG   82 (113)
T ss_dssp             EECSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGG
T ss_pred             eCCCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcc
Confidence            3466788899999999998644 3467999972  22111  0           01112222111111122237888999


Q ss_pred             CCeEEEEEEEe
Q psy18191        201 DSGVYWCVARN  211 (238)
Q Consensus       201 d~G~Y~C~a~N  211 (238)
                      |+|.|.|-+..
T Consensus        83 Dsa~YyCA~~~   93 (113)
T d2ntsp1          83 DSALYLCASSL   93 (113)
T ss_dssp             GCEEEEEEEES
T ss_pred             cceeeeeeeeC
Confidence            99999998764

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.75  E-value=4.8e-05  Score=50.64  Aligned_cols=73  Identities=14%  Similarity=0.297  Sum_probs=44.8

Q ss_pred             CCceEEeCCCcEEEEEEEeee-CCCEEEEEeC--CEE---eecc------CCccEEEe-cCCcEEEEEeecCCCCCCCeE
Q psy18191        138 PASAVVPRHEPTTLNCKADGY-PEPRIEWYKD--GSL---VSAE------IGSHRILL-PAGSLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~-P~p~i~W~~~--g~~---l~~~------~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~  204 (238)
                      |.++.+.+|++++|.|...+. ....+.|++.  |..   |...      ....+... .++.. ..+.|..+..+|+|.
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~L~I~~~~~~Dsa~   83 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKS-STLILPHATLRDTAV   83 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSE-EEEEESSCCGGGCEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCe-eeehhcccccCCceE
Confidence            446888999999999986543 3456899973  221   1110      01112222 22222 233478889999999


Q ss_pred             EEEEEEe
Q psy18191        205 YWCVARN  211 (238)
Q Consensus       205 Y~C~a~N  211 (238)
                      |.|.+..
T Consensus        84 YyCa~~~   90 (110)
T d2esvd1          84 YYCIVVR   90 (110)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEeC
Confidence            9998764

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.74  E-value=6e-05  Score=49.06  Aligned_cols=83  Identities=23%  Similarity=0.284  Sum_probs=51.5

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeC--CCEEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeecCCCCCCCeEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYP--EPRIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      .||.+...+.. ....++.+.|.|.+.|.-  ...++|++||..+..... .......+|+..+...+. +..++...|+
T Consensus         2 ~PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~-v~~~~~~~yt   79 (98)
T d1hdmb1           2 RPPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLA-LTPSYGDTYT   79 (98)
T ss_dssp             BCCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEE-ECCCTTCCEE
T ss_pred             CCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeE-cCCCCCCEEE
Confidence            35666553222 235578899999999973  357999999998864311 122233456655443322 2555566899


Q ss_pred             EEEEeCCC
Q psy18191        207 CVARNELG  214 (238)
Q Consensus       207 C~a~N~~G  214 (238)
                      |.+.....
T Consensus        80 C~V~H~sl   87 (98)
T d1hdmb1          80 CVVEHIGA   87 (98)
T ss_dssp             EEEECTTS
T ss_pred             EEEEeCCC
Confidence            99987543

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.74  E-value=0.00019  Score=47.84  Aligned_cols=77  Identities=19%  Similarity=0.419  Sum_probs=46.4

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeee-----CCCEEEEEeC--CE---Eeecc-------CCccEEEecCCcEEEEEeecC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGY-----PEPRIEWYKD--GS---LVSAE-------IGSHRILLPAGSLFFLSLVHG  196 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~-----P~p~i~W~~~--g~---~l~~~-------~~~~~~~~~~~~l~~~~vi~~  196 (238)
                      ++..|..+.+.+|++++|.|...+.     ....+.|++.  |.   .+...       ..........+... .+.|..
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~-~L~I~~   83 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDF-TLKISR   83 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEE-EEEESS
T ss_pred             EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcc-cCccCC
Confidence            3455677889999999999997543     2246899973  21   11100       01111112223222 234788


Q ss_pred             CCCCCCeEEEEEEEe
Q psy18191        197 KKDTDSGVYWCVARN  211 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N  211 (238)
                      +..+|+|.|.|-+.+
T Consensus        84 ~~~~DsavYyCa~~~   98 (113)
T d1n4xl_          84 VEAEDLGIYYCFQGS   98 (113)
T ss_dssp             CCGGGCEEEEEEECS
T ss_pred             CCcccCEEEEEEECC
Confidence            999999999996554

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.74  E-value=0.00012  Score=48.55  Aligned_cols=75  Identities=17%  Similarity=0.303  Sum_probs=46.1

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEE---eecc-C------CccE-EEec-C---CcEEEEEeecC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSL---VSAE-I------GSHR-ILLP-A---GSLFFLSLVHG  196 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~---l~~~-~------~~~~-~~~~-~---~~l~~~~vi~~  196 (238)
                      ++..|..+.+.+|++++|.|.....-...+.|++.  |..   |... .      .... .... +   -.|.    |..
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~----i~~   78 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQ----KAS   78 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEE----EEE
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeee----ecC
Confidence            44556778899999999999876655567999972  211   1100 0      0111 1111 1   2344    444


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy18191        197 KKDTDSGVYWCVARNE  212 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N~  212 (238)
                      +..+|+|.|.|-+...
T Consensus        79 ~~~~Dsa~YyCA~~~~   94 (110)
T d1ac6a_          79 VQESDSAVYYCALSGG   94 (110)
T ss_dssp             ECGGGCEEEEEEEEET
T ss_pred             cCcCCCcccceeecCC
Confidence            5999999999987653

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.74  E-value=0.00015  Score=48.33  Aligned_cols=77  Identities=14%  Similarity=0.302  Sum_probs=46.9

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEEe---ec-cC-----CccE-E-EecCCcEEEEEeecCCCCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSLV---SA-EI-----GSHR-I-LLPAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~l---~~-~~-----~~~~-~-~~~~~~l~~~~vi~~v~~~d  201 (238)
                      ...|..+.+.+|++++|.|...+ ....+.|++.  +..+   .. ..     .... . ....... ..+.|..+..+|
T Consensus         5 ~Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~L~I~~~~~~D   82 (113)
T d1h5ba_           5 EQSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARY-STLHIRDAQLED   82 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSE-EEEEECSCCGGG
T ss_pred             EECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCce-eEEEECCCCHhH
Confidence            34467788899999999998764 3457999972  2111   10 00     0011 1 1112222 223478889999


Q ss_pred             CeEEEEEEEeCC
Q psy18191        202 SGVYWCVARNEL  213 (238)
Q Consensus       202 ~G~Y~C~a~N~~  213 (238)
                      +|.|.|.+....
T Consensus        83 sa~YyCa~~~~~   94 (113)
T d1h5ba_          83 SGTYFCAAEASS   94 (113)
T ss_dssp             CEEEEEEEECSS
T ss_pred             CEEEEEEecCCC
Confidence            999999887544

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.74  E-value=9.9e-05  Score=49.14  Aligned_cols=77  Identities=23%  Similarity=0.378  Sum_probs=45.8

Q ss_pred             EeCCCceEEeCCCcEEEEEEEee-e---CCCEEEEEeC--CEE---eecc-------CCccEEEecCCcEEEEEeecCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADG-Y---PEPRIEWYKD--GSL---VSAE-------IGSHRILLPAGSLFFLSLVHGKK  198 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g-~---P~p~i~W~~~--g~~---l~~~-------~~~~~~~~~~~~l~~~~vi~~v~  198 (238)
                      +..|..+.+.+|+.++|.|.... .   -...+.|++.  |..   |...       .........++. ...+.|..+.
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~-~~~L~I~~~~   83 (111)
T d1j05a_           5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRT-DFTLIIDPVE   83 (111)
T ss_dssp             EEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSS-EEEEEESSCC
T ss_pred             EccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCC-EEEEEEcccc
Confidence            34466778889999999998642 1   2234999973  321   1100       011222222222 2333478899


Q ss_pred             CCCCeEEEEEEEeC
Q psy18191        199 DTDSGVYWCVARNE  212 (238)
Q Consensus       199 ~~d~G~Y~C~a~N~  212 (238)
                      .+|+|.|.|-+.+.
T Consensus        84 ~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          84 ADDVATYYCQQTNE   97 (111)
T ss_dssp             GGGCEEEEEEECSS
T ss_pred             cccCccEEEeecCC
Confidence            99999999976654

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=0.00011  Score=47.72  Aligned_cols=81  Identities=17%  Similarity=0.149  Sum_probs=45.2

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      -+|.+...|.. .+..|++++|.|... ...-.+..+|+|................+. .....|..++..|+|.|+|..
T Consensus         3 pkPsLsa~P~~-~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~-~a~F~l~~v~~~~~G~Y~C~y   79 (98)
T d1ugna2           3 IKPTLSAQPSP-VVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSS-RAIFSVGPVSPSRRWWYRCYA   79 (98)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CC-EEEEEECCCCTTSCEEEEEEE
T ss_pred             CCCEEEeeCCC-ccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCce-EEEEEeeecccCCCeEEEEee
Confidence            36888777754 588999999999863 233467777887643321000000001111 111226778999999999987


Q ss_pred             EeCC
Q psy18191        210 RNEL  213 (238)
Q Consensus       210 ~N~~  213 (238)
                      ....
T Consensus        80 ~~~~   83 (98)
T d1ugna2          80 YDSN   83 (98)
T ss_dssp             ECTT
T ss_pred             EcCC
Confidence            6443

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=0.0004  Score=42.97  Aligned_cols=86  Identities=16%  Similarity=0.211  Sum_probs=57.2

Q ss_pred             ceEEeCCCcEEEEEEEe-eeCCCEEEEEe-CCE---EeeccCCcc-EEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191        140 SAVVPRHEPTTLNCKAD-GYPEPRIEWYK-DGS---LVSAEIGSH-RILLPAGSLFFLSLVHGKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~-g~P~p~i~W~~-~g~---~l~~~~~~~-~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~  213 (238)
                      ..++..|+.+.|.|.+. -.-.|.++|-| +|.   ++......+ .+...+....+.+-+..+-.+|.|-|.|.|.-..
T Consensus        12 ~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s   91 (104)
T d1xaua_          12 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS   91 (104)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             eeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCCh
Confidence            35778899999999974 44578999976 442   232211111 1112222222223367889999999999999888


Q ss_pred             CceeEEEEEEEE
Q psy18191        214 GFARSKNATLDV  225 (238)
Q Consensus       214 G~~~s~~~~L~V  225 (238)
                      |-.+|++++|.|
T Consensus        92 ~vieSHSvti~V  103 (104)
T d1xaua_          92 QVINSHSVTIHV  103 (104)
T ss_dssp             EEEECCCEEEEE
T ss_pred             hheecceEEEEe
Confidence            888888888876

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.66  E-value=0.00012  Score=48.84  Aligned_cols=75  Identities=17%  Similarity=0.343  Sum_probs=44.9

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEEe--ec--c---------CCccEEEec-CCcEEEEEeecCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSLV--SA--E---------IGSHRILLP-AGSLFFLSLVHGKK  198 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~l--~~--~---------~~~~~~~~~-~~~l~~~~vi~~v~  198 (238)
                      +..|..+.+.+|++++|.|... .....+.|++.  |..+  ..  .         ......... .+.. ..+.|..+.
T Consensus         3 tQsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~I~~~~   80 (114)
T d1ogae1           3 TQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKES-FPLTVTSAQ   80 (114)
T ss_dssp             ECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTB-CCEEECSCC
T ss_pred             EEcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCe-EEEEECcCC
Confidence            3456678899999999999974 34568999973  2111  10  0         011122111 1111 112367779


Q ss_pred             CCCCeEEEEEEEe
Q psy18191        199 DTDSGVYWCVARN  211 (238)
Q Consensus       199 ~~d~G~Y~C~a~N  211 (238)
                      .+|+|.|.|.+..
T Consensus        81 ~~DSa~YyCa~~~   93 (114)
T d1ogae1          81 KNPTAFYLCASSS   93 (114)
T ss_dssp             SCCCEEEEEEEES
T ss_pred             cCCceeEEEeecc
Confidence            9999999997664

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.64  E-value=0.00068  Score=44.26  Aligned_cols=70  Identities=16%  Similarity=0.194  Sum_probs=46.1

Q ss_pred             EeCCCcEEEEEEEeeeCC--CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191        143 VPRHEPTTLNCKADGYPE--PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       143 ~~~G~~~~L~C~~~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~  213 (238)
                      +..|+..+|.|.+.|.-+  -.|.|++||..+............+++......+. +..+|...|+|.+.-..
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~-v~~~~~~~ytC~V~H~~   86 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLN-FTPEPSDIFSCIVTHEP   86 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEE-ECCCTTCCEEEEEEETT
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEE-EecCCCCEEEEEEEeCC
Confidence            356888899999999744  35999999987653322223334566665544332 24555557999998763

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.62  E-value=0.00019  Score=47.75  Aligned_cols=74  Identities=20%  Similarity=0.347  Sum_probs=45.3

Q ss_pred             CCceEEeCCCcEEEEEEEeeeC---CCEEEEEeC--CE---Eeecc-------CCccE-EEecCCcEEEEEeecCCCCCC
Q psy18191        138 PASAVVPRHEPTTLNCKADGYP---EPRIEWYKD--GS---LVSAE-------IGSHR-ILLPAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P---~p~i~W~~~--g~---~l~~~-------~~~~~-~~~~~~~l~~~~vi~~v~~~d  201 (238)
                      |..+.+.+|++++|.|...+..   ...+.|++.  |.   .+...       ..... ........  .+.|..++.+|
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~L~I~~l~~~D   84 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSA--SLTISGLQAED   84 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEE--EEEECSCCGGG
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEe--eEEeCcCcccc
Confidence            5678889999999999876532   245899973  21   11110       01111 11222222  22378889999


Q ss_pred             CeEEEEEEEeCC
Q psy18191        202 SGVYWCVARNEL  213 (238)
Q Consensus       202 ~G~Y~C~a~N~~  213 (238)
                      +|.|.|-+.+..
T Consensus        85 sa~YyCa~~~~~   96 (112)
T d1lgva1          85 EADYYCSSYDGS   96 (112)
T ss_dssp             CEEEEEEEECSS
T ss_pred             CEEEEEeeecCC
Confidence            999999876543

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.62  E-value=8.5e-05  Score=49.33  Aligned_cols=74  Identities=19%  Similarity=0.400  Sum_probs=45.1

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CE---Eeecc-------CCccEEEecCCcEEEEEeecCCCCCCCeEE
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GS---LVSAE-------IGSHRILLPAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~---~l~~~-------~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                      |..+.+.+|++++|.|.........+.|++.  |.   .|...       ..........+... .+.|..++.+|+|.|
T Consensus         7 p~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~L~I~~l~~~DsavY   85 (109)
T d1w72l1           7 PPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMA-TLTISRVEAGDEADY   85 (109)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEE-EEEESSCCGGGCEEE
T ss_pred             CCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCcc-ceEEeeeccCCCEEE
Confidence            3457788999999999975544556999963  21   11110       01112112222222 223788899999999


Q ss_pred             EEEEEeC
Q psy18191        206 WCVARNE  212 (238)
Q Consensus       206 ~C~a~N~  212 (238)
                      .|-+...
T Consensus        86 yCA~~~~   92 (109)
T d1w72l1          86 YCQVWDS   92 (109)
T ss_dssp             EEEEEET
T ss_pred             EEEecCC
Confidence            9987653

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.61  E-value=0.00019  Score=46.15  Aligned_cols=65  Identities=22%  Similarity=0.419  Sum_probs=40.1

Q ss_pred             CCcEEEEEEEeeeCCCEEEEEeC--CE---Eeec-cC-----Ccc-EEEe-cCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        146 HEPTTLNCKADGYPEPRIEWYKD--GS---LVSA-EI-----GSH-RILL-PAGSLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       146 G~~~~L~C~~~g~P~p~i~W~~~--g~---~l~~-~~-----~~~-~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      |++++|.|.........+.|++.  |.   .|.. ..     ..+ .... ..+.. ..+.|..++.+|+|.|.|.+..
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~-~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQY-VSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTE-EEEEECSCCGGGCEEEEEEEES
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCE-EeEEeeccccCcCccceeeEec
Confidence            78999999987777788999972  21   1110 00     011 1111 22222 2334788899999999998764

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.61  E-value=9.9e-05  Score=48.07  Aligned_cols=81  Identities=23%  Similarity=0.349  Sum_probs=49.9

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeeeCC--CEEEEEeCCEEeeccC-CccEEEecCCcEEEEEeecCCCCCCCeEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGYPE--PRIEWYKDGSLVSAEI-GSHRILLPAGSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~g~~l~~~~-~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      .+|.+...+.. ....|+..+|.|.+.|.-+  -.|+|++||..+..+. ........+|+..+...+.. ..++...|+
T Consensus         4 ~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v-~~~~~~~yt   81 (99)
T d1uvqa1           4 EVPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTF-LPSADEIYD   81 (99)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEE-CCCTTCCEE
T ss_pred             cCCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEE-cCCCCCEEE
Confidence            46766554222 2356788999999999743  4699999999886421 11112234556554433322 445556899


Q ss_pred             EEEEeC
Q psy18191        207 CVARNE  212 (238)
Q Consensus       207 C~a~N~  212 (238)
                      |.+...
T Consensus        82 C~V~H~   87 (99)
T d1uvqa1          82 CKVEHW   87 (99)
T ss_dssp             EEEECT
T ss_pred             EEEEeC
Confidence            999864

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.60  E-value=0.00012  Score=48.67  Aligned_cols=74  Identities=22%  Similarity=0.476  Sum_probs=44.4

Q ss_pred             eCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEE---ee----------ccC-CccEEEecCCcEEEEEeecCCCC
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSL---VS----------AEI-GSHRILLPAGSLFFLSLVHGKKD  199 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~---l~----------~~~-~~~~~~~~~~~l~~~~vi~~v~~  199 (238)
                      ..|..+.+.+|++++|.|...+ ....+.|++.  |..   |.          ... .........+.....+.|..+..
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~   82 (111)
T d2esve1           4 QFPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAEL   82 (111)
T ss_dssp             EECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCG
T ss_pred             ECCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCccc
Confidence            3466788899999999998543 3457999973  211   11          000 11222222111112223788899


Q ss_pred             CCCeEEEEEEE
Q psy18191        200 TDSGVYWCVAR  210 (238)
Q Consensus       200 ~d~G~Y~C~a~  210 (238)
                      +|+|.|.|-+.
T Consensus        83 ~Dsa~YyCa~~   93 (111)
T d2esve1          83 EDSGVYFCASS   93 (111)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCCceEEEeee
Confidence            99999999765

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.59  E-value=0.00018  Score=47.95  Aligned_cols=76  Identities=17%  Similarity=0.308  Sum_probs=46.2

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEEee---c-c---------CCccEEEe-cCCcEEEEEeecCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSLVS---A-E---------IGSHRILL-PAGSLFFLSLVHGK  197 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~l~---~-~---------~~~~~~~~-~~~~l~~~~vi~~v  197 (238)
                      +...|..+.+.+|++++|.|... .-...+.|++.  |..+.   . .         ....+... .++.. ..+.|..+
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~i~~~   80 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKER-FSLILESA   80 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTB-CEEEESSC
T ss_pred             EEccCCEEEECCCCCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcE-eeeEeccC
Confidence            44557778889999999999853 23467999972  21111   0 0         01122222 12221 22237888


Q ss_pred             CCCCCeEEEEEEEe
Q psy18191        198 KDTDSGVYWCVARN  211 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N  211 (238)
                      ..+|+|.|.|-+..
T Consensus        81 ~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          81 STNQTSMYLCASSS   94 (113)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             ccCCcccEEeeEcc
Confidence            99999999998764

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.58  E-value=5.5e-05  Score=49.06  Aligned_cols=81  Identities=12%  Similarity=0.236  Sum_probs=48.4

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeee-CCC-EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGY-PEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      ++|.+......  ...++.++|.|.+.|. |.. .++|++++..+............+|+......+.- ..+|...|+|
T Consensus         2 v~P~V~l~~~~--~~~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v-~~~~~~~ytC   78 (96)
T d2h26a1           2 VKPEAWLSSGP--SPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDV-ADGEAAGLSC   78 (96)
T ss_dssp             BCCEEEEEEES--CCSTTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEE-EGGGCTTEEE
T ss_pred             cCCEEEEEcCC--CCCCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEE-eCccCCEEEE
Confidence            45665543211  1345689999999986 544 69999999876532112223345566554433221 4455567999


Q ss_pred             EEEeCC
Q psy18191        208 VARNEL  213 (238)
Q Consensus       208 ~a~N~~  213 (238)
                      .+....
T Consensus        79 ~V~H~s   84 (96)
T d2h26a1          79 RVKHSS   84 (96)
T ss_dssp             EEEEGG
T ss_pred             EEEeCC
Confidence            998754

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.57  E-value=9.4e-05  Score=48.01  Aligned_cols=81  Identities=15%  Similarity=0.290  Sum_probs=46.3

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCC--CEEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPE--PRIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      +|.+...+... ...++..+|.|.+.|.-+  -.+.|++||..+..... .......+|+..+...+. +...+...|+|
T Consensus         2 ~P~V~v~p~~~-~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~-v~~~~~~~ytC   79 (97)
T d1uvqb1           2 EPTVTISPSRT-EALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLE-MTPQRGDVYTC   79 (97)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEE-CCSCTTCCEEE
T ss_pred             CCEEEEecCCc-ccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEec-cCCCCCCEEEE
Confidence            46665443222 234677889999998754  46999999987764211 111223456665555443 25566678999


Q ss_pred             EEEeCC
Q psy18191        208 VARNEL  213 (238)
Q Consensus       208 ~a~N~~  213 (238)
                      .+.-..
T Consensus        80 ~V~H~s   85 (97)
T d1uvqb1          80 HVEHPS   85 (97)
T ss_dssp             EEECTT
T ss_pred             EEEeCC
Confidence            998654

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.57  E-value=0.00031  Score=46.03  Aligned_cols=73  Identities=18%  Similarity=0.286  Sum_probs=44.3

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC--E---Eeecc-------CCccEE-EecCCcEEEEEeecCCCCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG--S---LVSAE-------IGSHRI-LLPAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g--~---~l~~~-------~~~~~~-~~~~~~l~~~~vi~~v~~~d  201 (238)
                      +..|..+.+.+|++++|.|.... ....+.|++..  .   .+...       ...... ...+...  .+.|..++.+|
T Consensus         4 tQsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~L~I~~~~~~D   80 (104)
T d1yqvl1           4 TQSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSY--SLTISSMETED   80 (104)
T ss_dssp             EEESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEE--EEEESSCCGGG
T ss_pred             eCcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEE--EEEecccCccc
Confidence            34567788999999999998643 34458899731  1   11100       011111 1222222  23378899999


Q ss_pred             CeEEEEEEE
Q psy18191        202 SGVYWCVAR  210 (238)
Q Consensus       202 ~G~Y~C~a~  210 (238)
                      +|.|.|-+.
T Consensus        81 sa~YyCa~~   89 (104)
T d1yqvl1          81 AATYYCQQW   89 (104)
T ss_dssp             CEEEEEEEC
T ss_pred             CCeEEEEec
Confidence            999999654

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.56  E-value=0.00023  Score=47.32  Aligned_cols=75  Identities=19%  Similarity=0.354  Sum_probs=44.3

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEEee-----cc--------CCccEEEecCCcEEEEEeecCCCC
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSLVS-----AE--------IGSHRILLPAGSLFFLSLVHGKKD  199 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~l~-----~~--------~~~~~~~~~~~~l~~~~vi~~v~~  199 (238)
                      +..|..+.+.+|++++|.|.... -...+.|++.  |..+.     ..        ....+...........+.|..+..
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (112)
T d2bnub1           3 TQTPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAP   81 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCG
T ss_pred             EECCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCH
Confidence            44566778899999999998643 3467999972  21111     00        011112211111111223777899


Q ss_pred             CCCeEEEEEEE
Q psy18191        200 TDSGVYWCVAR  210 (238)
Q Consensus       200 ~d~G~Y~C~a~  210 (238)
                      +|+|.|.|-+.
T Consensus        82 ~DsavYyCA~~   92 (112)
T d2bnub1          82 SQTSVYFCASS   92 (112)
T ss_dssp             GGCEEEEEEEE
T ss_pred             HHCEEEEEeec
Confidence            99999999765

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.53  E-value=0.0002  Score=47.60  Aligned_cols=74  Identities=18%  Similarity=0.347  Sum_probs=44.0

Q ss_pred             eCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CE---Eee---------cc--CCccEEEecCCcEEEEEeecCCCC
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GS---LVS---------AE--IGSHRILLPAGSLFFLSLVHGKKD  199 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~---~l~---------~~--~~~~~~~~~~~~l~~~~vi~~v~~  199 (238)
                      ..|..+.+.+|++++|.|...+ ....+.|++.  +.   .+.         ..  ................+.|..+..
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (112)
T d1kgce1           4 QSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQ   82 (112)
T ss_dssp             EECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCG
T ss_pred             ECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCc
Confidence            3466778899999999998543 3467999972  21   111         00  011222221121112223788899


Q ss_pred             CCCeEEEEEEE
Q psy18191        200 TDSGVYWCVAR  210 (238)
Q Consensus       200 ~d~G~Y~C~a~  210 (238)
                      +|+|.|.|-+.
T Consensus        83 ~Dsa~YyCa~~   93 (112)
T d1kgce1          83 EDSAVYLCASS   93 (112)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCCEEEEEeee
Confidence            99999999775

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.52  E-value=0.00025  Score=45.29  Aligned_cols=78  Identities=21%  Similarity=0.301  Sum_probs=47.5

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      .||.+...   .....++.+.|.|.+.|. |. -.++|++||..+... ........+|+......+. +..++...|+|
T Consensus         2 ~PP~V~v~---~~~~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~-~~~~~~~~dgty~~~S~l~-v~~~~~~~ytC   76 (91)
T d3frua1           2 EPPSMRLK---ARPGNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSG-NCSTGPNGDGSFHAWSLLE-VKRGDEHHYQC   76 (91)
T ss_dssp             BCCEEEEE---EEECSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCC-EEEEEECSSSCEEEEEEEE-EETTCGGGEEE
T ss_pred             CCCEEEEE---ecCCCCCCEEEEEEEEeEECCCCEEEEEECCEeCCcc-CccceecCCCCEeEEEEEE-ECCCCCCEEEE
Confidence            46666542   112335678999999996 44 369999999887542 1112223456665444332 24455568999


Q ss_pred             EEEeC
Q psy18191        208 VARNE  212 (238)
Q Consensus       208 ~a~N~  212 (238)
                      .+.-.
T Consensus        77 ~V~H~   81 (91)
T d3frua1          77 QVEHE   81 (91)
T ss_dssp             EEECT
T ss_pred             EEEeC
Confidence            98754

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.52  E-value=0.00028  Score=46.86  Aligned_cols=74  Identities=22%  Similarity=0.389  Sum_probs=45.1

Q ss_pred             CCceEEeCCCcEEEEEEEeeeC--CCEEEEEeC--C---EEeecc-------CCccEEEecCCcEEEEEeecCCCCCCCe
Q psy18191        138 PASAVVPRHEPTTLNCKADGYP--EPRIEWYKD--G---SLVSAE-------IGSHRILLPAGSLFFLSLVHGKKDTDSG  203 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~--g---~~l~~~-------~~~~~~~~~~~~l~~~~vi~~v~~~d~G  203 (238)
                      |.++.+.+|++++|.|...+.-  ...+.|++.  +   ..|...       ...+.....++... .+.|..++.+|+|
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~-~L~I~~~~~~Dsa   85 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSA-TLGITGLQTGDEA   85 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEE-EEEESSCCGGGCS
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEe-eeEEeeeccccCc
Confidence            3468889999999999875433  345999963  1   111110       01122222223322 2347889999999


Q ss_pred             EEEEEEEeC
Q psy18191        204 VYWCVARNE  212 (238)
Q Consensus       204 ~Y~C~a~N~  212 (238)
                      .|.|-+...
T Consensus        86 ~YyCA~~~~   94 (111)
T d1rzfl1          86 DYYCGTWDS   94 (111)
T ss_dssp             EEEEEEEET
T ss_pred             ceEEeecCC
Confidence            999987643

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.50  E-value=0.00038  Score=46.86  Aligned_cols=76  Identities=16%  Similarity=0.312  Sum_probs=44.9

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeeeC--CCEEEEEeC--C---EEeec---c-------CCccEEEe--cCCcEEEEEeec
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGYP--EPRIEWYKD--G---SLVSA---E-------IGSHRILL--PAGSLFFLSLVH  195 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~--g---~~l~~---~-------~~~~~~~~--~~~~l~~~~vi~  195 (238)
                      ...+..+...+|++++|.|.+.+..  ...+.|++.  |   ..|..   .       ....+...  ........+.|.
T Consensus         5 ~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~   84 (120)
T d1ypzf1           5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIY   84 (120)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEEC
T ss_pred             EcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccc
Confidence            3344567788999999999976543  356899972  2   11210   0       01112221  111212223378


Q ss_pred             CCCCCCCeEEEEEEE
Q psy18191        196 GKKDTDSGVYWCVAR  210 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~  210 (238)
                      .+..+|+|.|.|-+.
T Consensus        85 ~l~~~Dsa~YyCA~~   99 (120)
T d1ypzf1          85 SLEEEDEAIYYCSYG   99 (120)
T ss_dssp             SCCGGGCSEEEEEEC
T ss_pred             ccccccceeEEEEEc
Confidence            889999999999664

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.47  E-value=0.00032  Score=46.67  Aligned_cols=75  Identities=19%  Similarity=0.337  Sum_probs=45.3

Q ss_pred             EeCCCceEEeCCCcEEEEEEEeee---C---CCEEEEEeC--CEEe---ec-------cCCccE-EEecCCcEEEEEeec
Q psy18191        135 TEHPASAVVPRHEPTTLNCKADGY---P---EPRIEWYKD--GSLV---SA-------EIGSHR-ILLPAGSLFFLSLVH  195 (238)
Q Consensus       135 ~~~~~~~~~~~G~~~~L~C~~~g~---P---~p~i~W~~~--g~~l---~~-------~~~~~~-~~~~~~~l~~~~vi~  195 (238)
                      +..|..+.+.+|++++|.|...+.   .   ...+.|++.  |..+   ..       ...... ...++....  +.|.
T Consensus         5 tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~--L~I~   82 (113)
T d1q9ra1           5 SQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFT--LTIT   82 (113)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEE--EEES
T ss_pred             EccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEe--EEec
Confidence            445677889999999999986431   1   134899973  2111   10       001111 112233332  3478


Q ss_pred             CCCCCCCeEEEEEEEe
Q psy18191        196 GKKDTDSGVYWCVARN  211 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~N  211 (238)
                      .++.+|+|.|.|-+.+
T Consensus        83 ~l~~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          83 SVQAEDLAVYYCKQSY   98 (113)
T ss_dssp             SCCGGGCEEEEEEECS
T ss_pred             ccccCCCeEEEecccC
Confidence            9999999999997653

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.45  E-value=0.00011  Score=48.97  Aligned_cols=76  Identities=13%  Similarity=0.227  Sum_probs=45.3

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCC--E---Eeec-c---------CCccEE-EecCCcEEEEEeecCC
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG--S---LVSA-E---------IGSHRI-LLPAGSLFFLSLVHGK  197 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g--~---~l~~-~---------~~~~~~-~~~~~~l~~~~vi~~v  197 (238)
                      ++..|..+.+.+|+.++|.|.... -...+.|++..  .   .|.. .         ...+.. ....+.. ..+.|..+
T Consensus         4 VtQ~P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~I~~~   81 (113)
T d1nfdb1           4 VVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYH-SEMNMSAL   81 (113)
T ss_dssp             CEEECSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSC-EEEECCSC
T ss_pred             EEEcCCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCe-EEEEeccc
Confidence            345566788899999999998643 24679999732  1   1100 0         001111 1111221 22237888


Q ss_pred             CCCCCeEEEEEEEe
Q psy18191        198 KDTDSGVYWCVARN  211 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N  211 (238)
                      ..+|+|.|.|-+..
T Consensus        82 ~~~Dsa~YyCa~~~   95 (113)
T d1nfdb1          82 ELEDSAMYFCASSL   95 (113)
T ss_dssp             CGGGCEEECEEEES
T ss_pred             CcCCceeEEEEeec
Confidence            99999999997754

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.42  E-value=0.00023  Score=47.96  Aligned_cols=73  Identities=22%  Similarity=0.383  Sum_probs=44.7

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--C---EEeecc-------CCccEEEecCCcEEEEEeecCCCCCCCeEE
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKD--G---SLVSAE-------IGSHRILLPAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g---~~l~~~-------~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                      |..+.+.+|++++|.|...+.-...+.|++.  +   ..|...       ..........+.. ..+.|..++.+|+|.|
T Consensus         8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~-~~L~I~~~~~~DsavY   86 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTD-YTLTISSLQPEDVATY   86 (119)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTE-EEEEECSCCGGGCSEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCE-EEEEcccCccCCCeEE
Confidence            5567788999999999876554566999973  1   112111       0111111112221 2233788899999999


Q ss_pred             EEEEEe
Q psy18191        206 WCVARN  211 (238)
Q Consensus       206 ~C~a~N  211 (238)
                      .|.+.+
T Consensus        87 yCa~~~   92 (119)
T d1f3rb2          87 FCYQYN   92 (119)
T ss_dssp             EEEEES
T ss_pred             EeeccC
Confidence            997664

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.0003  Score=45.94  Aligned_cols=86  Identities=19%  Similarity=0.249  Sum_probs=49.2

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCC--CEEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeecC--CCCCCCe
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPE--PRIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVHG--KKDTDSG  203 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~~--v~~~d~G  203 (238)
                      ..+|.+...+.......++.+.|.|.+.|.-+  -.|.|+++|..+..... .......+|+......+.-  .......
T Consensus         3 ~~~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~   82 (102)
T d1q0xl2           3 KSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHS   82 (102)
T ss_dssp             CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCC
T ss_pred             CCCCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCC
Confidence            35676655433222224567899999988743  36999999988764211 1112234565544332211  1223356


Q ss_pred             EEEEEEEeCCC
Q psy18191        204 VYWCVARNELG  214 (238)
Q Consensus       204 ~Y~C~a~N~~G  214 (238)
                      .|+|.+.....
T Consensus        83 ~ytC~V~H~~~   93 (102)
T d1q0xl2          83 SYSCQVTHEGH   93 (102)
T ss_dssp             EEEEEEEETTE
T ss_pred             EEEEEEEECCc
Confidence            89999987543

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.40  E-value=0.00021  Score=47.23  Aligned_cols=72  Identities=18%  Similarity=0.335  Sum_probs=44.6

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEE---eecc------C-CccEE-EecCCcEEEEEeecCCCCCCCeE
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSL---VSAE------I-GSHRI-LLPAGSLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~---l~~~------~-~~~~~-~~~~~~l~~~~vi~~v~~~d~G~  204 (238)
                      |..+.+.+|++++|.|.........+.|++.  |..   |...      . ..+.. ...+....  ..|..++.+|+|.
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~--L~I~~l~~~Dsa~   83 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTAT--LTISGAQPEDEAA   83 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEE--EEETTCCGGGCSE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEee--eeEcCccccCCce
Confidence            5567888999999999875444456899972  221   1110      0 11111 12222222  2478899999999


Q ss_pred             EEEEEEe
Q psy18191        205 YWCVARN  211 (238)
Q Consensus       205 Y~C~a~N  211 (238)
                      |.|-+..
T Consensus        84 YyCA~~~   90 (108)
T d1nfde1          84 YYCLSSY   90 (108)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeec
Confidence            9997763

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.39  E-value=0.00019  Score=47.69  Aligned_cols=76  Identities=17%  Similarity=0.382  Sum_probs=44.7

Q ss_pred             eCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CE---Eeec-c---------CCccEEEe-cCCcEEEEEeecCCCC
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GS---LVSA-E---------IGSHRILL-PAGSLFFLSLVHGKKD  199 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~---~l~~-~---------~~~~~~~~-~~~~l~~~~vi~~v~~  199 (238)
                      ..|..+.+.+|+.++|.|.... -...+.|++.  |.   .|.. .         ........ .+... ..+.|..+..
T Consensus         3 QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~i~~~~~   80 (112)
T d2cdeb1           3 QTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEH-FPLTLESARP   80 (112)
T ss_dssp             EECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSB-CCEEBSSCCT
T ss_pred             ECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCc-eEeeeccccc
Confidence            3466788899999999998643 2467999973  11   1110 0         00111111 11111 1223677899


Q ss_pred             CCCeEEEEEEEeCC
Q psy18191        200 TDSGVYWCVARNEL  213 (238)
Q Consensus       200 ~d~G~Y~C~a~N~~  213 (238)
                      +|+|.|.|-+....
T Consensus        81 ~Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          81 SHTSQYLCASSENI   94 (112)
T ss_dssp             TTCSEEEEEEECSS
T ss_pred             cccccEEEEEecCC
Confidence            99999999876543

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00018  Score=48.36  Aligned_cols=73  Identities=15%  Similarity=0.205  Sum_probs=43.0

Q ss_pred             CCceEEeCCCcEEEEEEEeee--C-----CCEEEEEeCCEEeec-------c--------CCccEEEec---CCcEEEEE
Q psy18191        138 PASAVVPRHEPTTLNCKADGY--P-----EPRIEWYKDGSLVSA-------E--------IGSHRILLP---AGSLFFLS  192 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~--P-----~p~i~W~~~g~~l~~-------~--------~~~~~~~~~---~~~l~~~~  192 (238)
                      |.++++.+|+.+.|.|.....  +     ...+.|++....-..       .        ..++.....   .+...+  
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL--   85 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTL--   85 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCE--
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEE--
Confidence            467889999999999987421  1     135789875321110       0        011222221   122222  


Q ss_pred             eecCCCCCCCeEEEEEEEeC
Q psy18191        193 LVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       193 vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      .|..++.+|+|.|.|.....
T Consensus        86 ~I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          86 SIRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             EECSCCGGGCEEEEEEEEET
T ss_pred             EECCCChHHCEEEEEEEEeC
Confidence            27788999999999998653

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.38  E-value=0.0012  Score=44.44  Aligned_cols=75  Identities=17%  Similarity=0.348  Sum_probs=45.2

Q ss_pred             eCCCceEEeCCCcEEEEEEEeeeC--CCEEEEEeC--CE---Eeec----------c-C-CccEE-Eec-CCcEEEEEee
Q psy18191        136 EHPASAVVPRHEPTTLNCKADGYP--EPRIEWYKD--GS---LVSA----------E-I-GSHRI-LLP-AGSLFFLSLV  194 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~--g~---~l~~----------~-~-~~~~~-~~~-~~~l~~~~vi  194 (238)
                      .++.+++..+|++++|.|.+.|..  ...+.|++.  |+   .|..          . . .++.. ... ..+. ..+.|
T Consensus         6 Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~-~~L~i   84 (123)
T d1hxmb1           6 QPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETST-STLTI   84 (123)
T ss_dssp             CCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTE-EEEEE
T ss_pred             CCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccc-eeecc
Confidence            334567888999999999998754  346899973  21   1110          0 0 11121 111 2222 22237


Q ss_pred             cCCCCCCCeEEEEEEEe
Q psy18191        195 HGKKDTDSGVYWCVARN  211 (238)
Q Consensus       195 ~~v~~~d~G~Y~C~a~N  211 (238)
                      ..+..+|+|.|.|-+..
T Consensus        85 ~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          85 HNVEKQDIATYYCALWE  101 (123)
T ss_dssp             CSCCGGGCEEEEEEEEE
T ss_pred             cccccccCcEEEEeeeC
Confidence            88899999999997654

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=5.5e-05  Score=49.74  Aligned_cols=44  Identities=11%  Similarity=0.088  Sum_probs=31.3

Q ss_pred             cCCCccEEEeccccccccce-------------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLPQSKQG-------------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~g-------------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..|.|++.|++++.++...+             ...|.+.++...|+|.|+|.+.|.
T Consensus        28 G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   84 (105)
T d1wwca_          28 GNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNP   84 (105)
T ss_dssp             CSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEET
T ss_pred             EeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcC
Confidence            46788999999988665432             134666777788888888777664

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00033  Score=45.87  Aligned_cols=70  Identities=17%  Similarity=0.301  Sum_probs=42.6

Q ss_pred             eCCCcEEEEEEEeee-CCC-EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCC---CeEEEEEEEeCCC
Q psy18191        144 PRHEPTTLNCKADGY-PEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTD---SGVYWCVARNELG  214 (238)
Q Consensus       144 ~~G~~~~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d---~G~Y~C~a~N~~G  214 (238)
                      ..+.++.|.|.+.|. |.. .|+|+++|..+............++.......+. +..+|   ...|+|.+.....
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~-v~~~~w~~~~~ytC~V~H~~~   93 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELT-LSQKHWLSDRTYTCQVTYQGH   93 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEE-EEHHHHHTTCCEEEEEEETTE
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEE-ECHHHcCCCCEEEEEEEECCE
Confidence            345678999999885 544 5999999998875322222233455443322221 13333   4569999998753

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00091  Score=40.63  Aligned_cols=57  Identities=18%  Similarity=0.281  Sum_probs=37.8

Q ss_pred             eCCCcEEEEEEEeeeCC--CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191        144 PRHEPTTLNCKADGYPE--PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR  210 (238)
Q Consensus       144 ~~G~~~~L~C~~~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~  210 (238)
                      ..|..+.|.|.....+.  -.-.|+|+|..|..+....       ...-..+ .  ..+++|+|.|+..
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~-------~~tey~V-~--~~D~SGeY~CVFl   68 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-------QKTEFKV-D--SDDQWGEYSCVFL   68 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC-------SEEEEEE-C--GGGCCEEEEEEEE
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCC-------CceEEEE-e--cCCCCceEEEEEc
Confidence            55788899999765543  3578999999998642221       1111122 2  4667999999954

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.34  E-value=0.0011  Score=44.17  Aligned_cols=72  Identities=13%  Similarity=0.270  Sum_probs=42.6

Q ss_pred             CCceEEeCCCcEEEEEEEeeeC-CC--EEEEEeC--CEEee-----ccC-------Cc-c-EEEecCCcEEEEEeecCCC
Q psy18191        138 PASAVVPRHEPTTLNCKADGYP-EP--RIEWYKD--GSLVS-----AEI-------GS-H-RILLPAGSLFFLSLVHGKK  198 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P-~p--~i~W~~~--g~~l~-----~~~-------~~-~-~~~~~~~~l~~~~vi~~v~  198 (238)
                      |..+.+.+|++++|.|.....- ..  .+.|++.  |+.+.     ...       .. . .....+....  +.|.+++
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--L~I~~l~   83 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVN--LTIQGLR   83 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEE--EEECSCC
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEE--EEhhcCc
Confidence            4556678899999999975332 23  3779973  32211     000       00 0 1112233333  2378889


Q ss_pred             CCCCeEEEEEEEe
Q psy18191        199 DTDSGVYWCVARN  211 (238)
Q Consensus       199 ~~d~G~Y~C~a~N  211 (238)
                      .+|+|.|.|.+..
T Consensus        84 ~~Dsa~YyCa~~~   96 (117)
T d1dqta_          84 AVDTGLYLCKVEL   96 (117)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCEeEEEEEec
Confidence            9999999998763

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00028  Score=45.44  Aligned_cols=66  Identities=18%  Similarity=0.277  Sum_probs=40.6

Q ss_pred             CCcEEEEEEEeeeCCC--EEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        146 HEPTTLNCKADGYPEP--RIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       146 G~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      ++.+.|.|.+.|..+.  .++|+++|..+..... .......++.......+. +...+...|+|.+.-.
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~-v~~~~~~~ytC~V~H~   83 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVV-VPSGEEQRYTCHVQHE   83 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEE-EETTCGGGEEEEEECT
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEE-EEcCCCCEEEEEEEEC
Confidence            5679999999998654  5799999988765311 111223344444333222 1344445799998853

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.29  E-value=0.0003  Score=44.68  Aligned_cols=77  Identities=16%  Similarity=0.201  Sum_probs=45.2

Q ss_pred             CCEEEeCCCceEEeCCCcEEEEEEEeeeCCC--EEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191        131 VPRITEHPASAVVPRHEPTTLNCKADGYPEP--RIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVHGKKDTDSGVYWC  207 (238)
Q Consensus       131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C  207 (238)
                      ||.+...   .....++.+.|.|.+.|..+.  .++|+++|..+..... .......+|+......+.. ...+...|+|
T Consensus         3 pP~v~v~---~~~~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v-~~~~~~~ytC   78 (89)
T d2mhaa1           3 SPKAHVT---HHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVV-PLGKEQYYTC   78 (89)
T ss_dssp             CCEEEEC---CEESCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEE-ESSTTTTCEE
T ss_pred             CCEeEEE---ccCCCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEe-cCcCCCEEEE
Confidence            5665542   122446789999999997544  5899999998864311 1122334555544333221 3334446999


Q ss_pred             EEEe
Q psy18191        208 VARN  211 (238)
Q Consensus       208 ~a~N  211 (238)
                      .+.-
T Consensus        79 ~V~H   82 (89)
T d2mhaa1          79 HVYH   82 (89)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            8864

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.29  E-value=0.00021  Score=47.37  Aligned_cols=73  Identities=19%  Similarity=0.171  Sum_probs=42.5

Q ss_pred             CCceEEeCCCcEEEEEEEee---eC---CCEEEEEeCC----EEeecc---------CCccEEEec---CCcEEEEEeec
Q psy18191        138 PASAVVPRHEPTTLNCKADG---YP---EPRIEWYKDG----SLVSAE---------IGSHRILLP---AGSLFFLSLVH  195 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g---~P---~p~i~W~~~g----~~l~~~---------~~~~~~~~~---~~~l~~~~vi~  195 (238)
                      |..+.+.+|+.+.|.|....   .+   .-.+.|++..    ..+...         ...+.....   .+...+  .|.
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL--~I~   84 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNL--LLK   84 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCE--EEC
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEE--EEC
Confidence            56788999999999998742   11   1235677632    111110         011222221   122222  267


Q ss_pred             CCCCCCCeEEEEEEEeC
Q psy18191        196 GKKDTDSGVYWCVARNE  212 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~N~  212 (238)
                      .++.+|+|.|.|.+...
T Consensus        85 ~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          85 DLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             SCCGGGCEEEEEEEECC
T ss_pred             CCChhHCEEEEEEEEeC
Confidence            77999999999988654

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.26  E-value=0.00019  Score=47.36  Aligned_cols=85  Identities=15%  Similarity=0.187  Sum_probs=49.6

Q ss_pred             cCCEEEeC-CCceEEeCCCcEEEEEEEeeeCCC--EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCC-CeEE
Q psy18191        130 RVPRITEH-PASAVVPRHEPTTLNCKADGYPEP--RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTD-SGVY  205 (238)
Q Consensus       130 ~~P~i~~~-~~~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d-~G~Y  205 (238)
                      .+|.+... |.......++.+.|.|.+.|.-+.  .+.|++||..+............+|+......+.. ..++ ...|
T Consensus         7 ~~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v-~~~~w~~~y   85 (107)
T d1hxmb2           7 VSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTV-PEKSLDKEH   85 (107)
T ss_dssp             CSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEE-CTGGGGSCE
T ss_pred             CCCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEE-ecccCCCeE
Confidence            45665544 333345567889999999986443  59999999876532111111223455544333222 3344 2379


Q ss_pred             EEEEEeCCCc
Q psy18191        206 WCVARNELGF  215 (238)
Q Consensus       206 ~C~a~N~~G~  215 (238)
                      +|.+.-....
T Consensus        86 tC~V~H~s~~   95 (107)
T d1hxmb2          86 RCIVRHENNK   95 (107)
T ss_dssp             EEEEEETTSG
T ss_pred             EEEEEECCCC
Confidence            9999976543

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00021  Score=46.66  Aligned_cols=84  Identities=19%  Similarity=0.222  Sum_probs=49.4

Q ss_pred             ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC--EEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeecCCCCCC---C
Q psy18191        129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEP--RIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVHGKKDTD---S  202 (238)
Q Consensus       129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~~d---~  202 (238)
                      ..+|.+...+.......++.+.|.|.+.|..+.  .+.|++||..+..... .......+|+..+...|.- ..+|   .
T Consensus         3 ~~~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v-~~~~w~~~   81 (102)
T d1rzfl2           3 KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSL-TPEQWKSH   81 (102)
T ss_dssp             CBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEE-CHHHHHHS
T ss_pred             CCCCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEE-CHHHhCCC
Confidence            356776654332222246779999999986433  6999999988764210 1112234565554433221 4333   3


Q ss_pred             eEEEEEEEeCC
Q psy18191        203 GVYWCVARNEL  213 (238)
Q Consensus       203 G~Y~C~a~N~~  213 (238)
                      ..|+|.+....
T Consensus        82 ~~ytC~V~H~~   92 (102)
T d1rzfl2          82 RSYSCQVTHEG   92 (102)
T ss_dssp             SCEEEEEEETT
T ss_pred             CEEEEEEEECC
Confidence            46999998864

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=97.22  E-value=0.0004  Score=44.09  Aligned_cols=44  Identities=11%  Similarity=0.016  Sum_probs=34.4

Q ss_pred             CCCccEEEeccccccccce---------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQG---------LMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g---------~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .|.|.+.|++++.++....         ...|.+.++..+|+|.|+|.+.|..
T Consensus        26 ~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   78 (91)
T d1tnna_          26 EPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSE   78 (91)
T ss_dssp             SSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSS
T ss_pred             EeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECC
Confidence            5677899999988654322         3578889999999999998888753

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.001  Score=43.46  Aligned_cols=86  Identities=15%  Similarity=0.219  Sum_probs=45.4

Q ss_pred             cCCEEE-eCCCceEEeCCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCC--Ce-
Q psy18191        130 RVPRIT-EHPASAVVPRHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTD--SG-  203 (238)
Q Consensus       130 ~~P~i~-~~~~~~~~~~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d--~G-  203 (238)
                      .+|.+. ..+........+.+.|.|.+.|. |. -.|+|.++|..+............+|.......+.. ..+|  .| 
T Consensus         4 ~~P~V~~l~p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v-~~~eW~~~~   82 (105)
T d1dn0b2           4 SAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLL-PSKDVMAGT   82 (105)
T ss_dssp             BCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEE-CTTCC---C
T ss_pred             cCCeEEeECCCccccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEE-cHHHhccCC
Confidence            345543 33333344456789999999986 43 469999998766532111111224555544333222 2222  23 


Q ss_pred             --EEEEEEEeCCCce
Q psy18191        204 --VYWCVARNELGFA  216 (238)
Q Consensus       204 --~Y~C~a~N~~G~~  216 (238)
                        .|+|.+....+..
T Consensus        83 ~~~ytC~V~H~~~~~   97 (105)
T d1dn0b2          83 DEHVVCKVQHPNGNK   97 (105)
T ss_dssp             CCEEEEEEECTTCCE
T ss_pred             CCEEEEEEEECCCCE
Confidence              7999999876554

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00031  Score=46.71  Aligned_cols=70  Identities=16%  Similarity=0.187  Sum_probs=41.5

Q ss_pred             ceEEeCCCcEEEEEEEeee--CCCEEEEEeC--C---EEeecc-C-----C----ccE-EEe--cCCcEEEEEeecCCCC
Q psy18191        140 SAVVPRHEPTTLNCKADGY--PEPRIEWYKD--G---SLVSAE-I-----G----SHR-ILL--PAGSLFFLSLVHGKKD  199 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~--P~p~i~W~~~--g---~~l~~~-~-----~----~~~-~~~--~~~~l~~~~vi~~v~~  199 (238)
                      ...+.+|++++|.|...+.  ....+.|++.  +   ..+... .     .    ++. ...  ..+.+.  ..|..++.
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~--Lti~~l~~   85 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLR--VRMVNLQV   85 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEE--EEECSCCG
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEE--EEEccCCc
Confidence            3667889999999987532  4456889973  2   111110 0     0    111 111  122222  23788899


Q ss_pred             CCCeEEEEEEEe
Q psy18191        200 TDSGVYWCVARN  211 (238)
Q Consensus       200 ~d~G~Y~C~a~N  211 (238)
                      +|+|.|.|....
T Consensus        86 ~Dsg~Y~Cav~~   97 (113)
T d1smoa_          86 EDSGLYQCVIYQ   97 (113)
T ss_dssp             GGCEEEEEEECC
T ss_pred             ccCceEEEEEEC
Confidence            999999997643

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.18  E-value=0.0021  Score=42.37  Aligned_cols=74  Identities=16%  Similarity=0.363  Sum_probs=45.7

Q ss_pred             EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEEee---cc-C---------CccEEE---ecCCcEEEEEeec
Q psy18191        134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSLVS---AE-I---------GSHRIL---LPAGSLFFLSLVH  195 (238)
Q Consensus       134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~l~---~~-~---------~~~~~~---~~~~~l~~~~vi~  195 (238)
                      +...|..+.+.+|+.++|.|...+.-...+.|++.  |..+.   .. .         ...++.   ..+..+.+...  
T Consensus         4 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~--   81 (112)
T d1fo0b_           4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVA--   81 (112)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEE--
T ss_pred             EEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecC--
Confidence            44456677788999999999876655678999974  22111   00 0         011111   12334554444  


Q ss_pred             CCCCCCCeEEEEEEEe
Q psy18191        196 GKKDTDSGVYWCVARN  211 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~N  211 (238)
                        ..+|++.|.|.+.-
T Consensus        82 --~~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          82 --NMSQGRTLYCTCSA   95 (112)
T ss_dssp             --SCCSCEEEEEEEES
T ss_pred             --CccCCccEEEEEec
Confidence              89999999998653

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.17  E-value=0.00021  Score=46.69  Aligned_cols=68  Identities=24%  Similarity=0.434  Sum_probs=41.0

Q ss_pred             CCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCC---CeEEEEEEEeCC
Q psy18191        145 RHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTD---SGVYWCVARNEL  213 (238)
Q Consensus       145 ~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d---~G~Y~C~a~N~~  213 (238)
                      .++.+.|.|.+.|. |. -.++|+++|...............+|+......+. +..+|   ...|+|.+....
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~-v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLR-VEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEE-EEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEE-ECHHHcCCCCEEEEEEEeCC
Confidence            47789999999885 43 47999999976543211112223455554433322 13332   447999998643

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.17  E-value=1.7e-05  Score=51.62  Aligned_cols=76  Identities=18%  Similarity=0.403  Sum_probs=44.3

Q ss_pred             ceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEEee------ccC----Ccc-EEEecCCcEEEEEeecCCCCCCCeEEE
Q psy18191        140 SAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSLVS------AEI----GSH-RILLPAGSLFFLSLVHGKKDTDSGVYW  206 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~l~------~~~----~~~-~~~~~~~~l~~~~vi~~v~~~d~G~Y~  206 (238)
                      ++++.+|++++|.|...+ ....+.|++.  |..+.      ...    ..+ ............+.|..++.+|+|.|.
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   80 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF   80 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence            456789999999998653 3457999973  22111      000    011 111111111112237788999999999


Q ss_pred             EEEEeCCCce
Q psy18191        207 CVARNELGFA  216 (238)
Q Consensus       207 C~a~N~~G~~  216 (238)
                      |-+....|..
T Consensus        81 CA~~~~~g~~   90 (96)
T d1ymmd1          81 CATDTTSGTY   90 (96)
T ss_dssp             EEEEETTSCS
T ss_pred             EeEecCCCCc
Confidence            9887765543

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.0005  Score=45.05  Aligned_cols=85  Identities=14%  Similarity=0.287  Sum_probs=49.0

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccC--CccEEEecCCcEEEEEeecCCCC---CCC
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEI--GSHRILLPAGSLFFLSLVHGKKD---TDS  202 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~--~~~~~~~~~~~l~~~~vi~~v~~---~d~  202 (238)
                      .+|.+...+.......++.++|.|.+.|. |. ..+.|++||..+....  ........+|+......+.- ..   ...
T Consensus         3 ~~P~V~v~~p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v-~~~~W~~g   81 (105)
T d1fp5a2           3 AAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEV-TRAEWEQK   81 (105)
T ss_dssp             BCCEEEEEECCCCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEE-CHHHHTTG
T ss_pred             CCCEEEEECCChHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEE-CHHHcCCC
Confidence            35655433222333456789999999885 43 5799999999876421  01112334565554333221 32   233


Q ss_pred             eEEEEEEEeCCCc
Q psy18191        203 GVYWCVARNELGF  215 (238)
Q Consensus       203 G~Y~C~a~N~~G~  215 (238)
                      ..|+|.+......
T Consensus        82 ~~ytC~V~H~~l~   94 (105)
T d1fp5a2          82 DEFICRAVHEAAS   94 (105)
T ss_dssp             GGEEEEEECTTST
T ss_pred             CEEEEEEEECCCC
Confidence            4799999975543

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.0002  Score=44.55  Aligned_cols=76  Identities=18%  Similarity=0.274  Sum_probs=45.1

Q ss_pred             eCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCC-CCCeEEEEEEEeCCCceeEEEEE
Q psy18191        144 PRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKD-TDSGVYWCVARNELGFARSKNAT  222 (238)
Q Consensus       144 ~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~-~d~G~Y~C~a~N~~G~~~s~~~~  222 (238)
                      ..|.++.|.|.-  .+...|.|.+++..+...............|.    +..-.. +++|.|.|.+...--......++
T Consensus         8 ISGTtV~LTCP~--~~~~~i~W~~n~~~~~~~~~~~~~~~~~~~l~----L~dfSe~e~sGyY~C~~~~~~~~~~~~~LY   81 (91)
T d1xiwa_           8 ISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLS----LKEFSELEQSGYYVCYPRGSKPEDANFYLY   81 (91)
T ss_dssp             EETTEEEEECSS--CTTSCEEEEETTEEESSSCSCTTEEEETTEEE----ETTCCHHHHCEEEEEEETTSCGGGCCEEEE
T ss_pred             EeCCEEEEECCC--CCCCceeeeeccccccCCCcccccccccceEE----ecccCccccCceEEEEcCCCCCCCcceEEE
Confidence            358999999963  34467999999988774322222222233333    233233 68999999986443223223556


Q ss_pred             EEE
Q psy18191        223 LDV  225 (238)
Q Consensus       223 L~V  225 (238)
                      |.+
T Consensus        82 LKA   84 (91)
T d1xiwa_          82 LRA   84 (91)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            654

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.13  E-value=0.0011  Score=42.48  Aligned_cols=79  Identities=15%  Similarity=0.287  Sum_probs=45.6

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccCCc--cEEEecCCcEEEEEeecCCCCCCCeEE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEIGS--HRILLPAGSLFFLSLVHGKKDTDSGVY  205 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~--~~~~~~~~~l~~~~vi~~v~~~d~G~Y  205 (238)
                      +||.+......   ..++.+.|.|.+.|. |. -.++|+++|..+......  ......+++......+. +...+...|
T Consensus         2 vpP~V~v~~~~---~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~-v~~~~~~~y   77 (94)
T d1hyrc1           2 VPPMVNVTRSE---ASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATR-ICQGEEQRF   77 (94)
T ss_dssp             BCCEEEEEECC---CSSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEE-EETTCGGGE
T ss_pred             cCCEEEEEecC---CCCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEE-EcCCCCCEE
Confidence            45665542111   234678999999997 43 369999999988643111  11122345554443332 234444579


Q ss_pred             EEEEEeC
Q psy18191        206 WCVARNE  212 (238)
Q Consensus       206 ~C~a~N~  212 (238)
                      +|.+.-.
T Consensus        78 tC~V~H~   84 (94)
T d1hyrc1          78 TCYMEHS   84 (94)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9998753

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=97.13  E-value=0.00016  Score=46.73  Aligned_cols=43  Identities=12%  Similarity=0.176  Sum_probs=33.2

Q ss_pred             CCCccEEEeccccccccc----------eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQ----------GLMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~----------g~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.|.+.||+++.++..+          +...|.+.++...|.|.|+|.+.|.
T Consensus        31 ~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~   83 (98)
T d1g1ca_          31 KPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINI   83 (98)
T ss_dssp             ESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             ecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEEC
Confidence            567889999998866443          2346788899999999999877764

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.08  E-value=9.6e-05  Score=48.60  Aligned_cols=86  Identities=16%  Similarity=0.298  Sum_probs=49.8

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCC---CCCeE
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKD---TDSGV  204 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~---~d~G~  204 (238)
                      .+|.+...+....-..++.+.|.|.+.|. |. -.|.|++||..+............++.......+. +..   .+...
T Consensus         4 ~~P~V~v~~ps~~~~~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~-v~~~~w~~~~~   82 (104)
T d1nfde2           4 SSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLS-LTADQWKSHNR   82 (104)
T ss_dssp             BCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCC-EEHHHHHTCSC
T ss_pred             cCCEEEEECCCHHHHcCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEE-EcHHHcCCCCE
Confidence            45666654322211235678999999885 43 37999999998874311122223455544443321 122   23457


Q ss_pred             EEEEEEeCCCce
Q psy18191        205 YWCVARNELGFA  216 (238)
Q Consensus       205 Y~C~a~N~~G~~  216 (238)
                      |+|.+.......
T Consensus        83 ytC~V~H~~~~~   94 (104)
T d1nfde2          83 VSCQVTHEGETV   94 (104)
T ss_dssp             EEEEEECTTTTC
T ss_pred             EEEEEEECCCcE
Confidence            999999875443

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.07  E-value=0.00028  Score=45.42  Aligned_cols=43  Identities=9%  Similarity=0.073  Sum_probs=33.5

Q ss_pred             CCCccEEEeccccccccc---------eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQ---------GLMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~---------g~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.|.+.|++++.++...         +...|.+.++...|+|.|+|.+.|.
T Consensus        28 ~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   79 (97)
T d1koaa1          28 SSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNS   79 (97)
T ss_dssp             SSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEET
T ss_pred             cCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEEC
Confidence            567789999998865442         2457888899999999999888774

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.0014  Score=43.73  Aligned_cols=74  Identities=16%  Similarity=0.319  Sum_probs=42.6

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCC---EEEEEeC--CEEe--e---ccCC------ccEE--EecCCcEEEEEeecCCCC
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEP---RIEWYKD--GSLV--S---AEIG------SHRI--LLPAGSLFFLSLVHGKKD  199 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p---~i~W~~~--g~~l--~---~~~~------~~~~--~~~~~~l~~~~vi~~v~~  199 (238)
                      |..+.+.+|+.++|.|.....-.+   .+.|++.  |+.+  .   ....      ....  ...++.. ..+.|.++..
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~I~~l~~   84 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQ-VNLTIQGLRA   84 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSE-EEEEECSCCG
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCE-EEEEeecccc
Confidence            445667889999999997433323   4889973  2211  0   0000      0110  1112222 2233788899


Q ss_pred             CCCeEEEEEEEeC
Q psy18191        200 TDSGVYWCVARNE  212 (238)
Q Consensus       200 ~d~G~Y~C~a~N~  212 (238)
                      +|+|.|.|.+...
T Consensus        85 ~Dsa~YyCa~~~~   97 (118)
T d1i8lc_          85 MDTGLYICKVELM   97 (118)
T ss_dssp             GGCEEEEEEEEEE
T ss_pred             CCCEEEEEeEecc
Confidence            9999999987653

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.00038  Score=45.33  Aligned_cols=68  Identities=21%  Similarity=0.410  Sum_probs=41.3

Q ss_pred             CCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCC---CCeEEEEEEEeCC
Q psy18191        145 RHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDT---DSGVYWCVARNEL  213 (238)
Q Consensus       145 ~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~---d~G~Y~C~a~N~~  213 (238)
                      ..+.+.|.|.+.|. |. -.|.|+++|..+............+|+......+. +..+   ....|+|.+.-..
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~-v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLN-VQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEE-EEHHHHHTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEE-ECHHHhCCCCEEEEEEEECC
Confidence            35678999999986 53 46999999987653211112233456554433322 1332   3457999998653

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.99  E-value=0.0031  Score=41.51  Aligned_cols=75  Identities=15%  Similarity=0.204  Sum_probs=44.2

Q ss_pred             CceEEeCCCcEEEEEEEeee--CCCEEEEEeC--CE---Eeec-c-CC--------ccE-EEecCCcEEEEEeecCCCCC
Q psy18191        139 ASAVVPRHEPTTLNCKADGY--PEPRIEWYKD--GS---LVSA-E-IG--------SHR-ILLPAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~--P~p~i~W~~~--g~---~l~~-~-~~--------~~~-~~~~~~~l~~~~vi~~v~~~  200 (238)
                      +...+.+|++++|.|...+.  ....+.|++.  |.   .+.. . ..        ++. +......-.+...|..++.+
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~e   82 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVT   82 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccC
Confidence            34678999999999998653  4567889984  22   1111 1 00        111 11111111122237888999


Q ss_pred             CCeEEEEEEEeCC
Q psy18191        201 DSGVYWCVARNEL  213 (238)
Q Consensus       201 d~G~Y~C~a~N~~  213 (238)
                      |+|.|.|.....-
T Consensus        83 Dsa~YyCa~~~~~   95 (110)
T d1u9ka_          83 DSGLYRCVIYHPP   95 (110)
T ss_dssp             GCEEEEEEEECTT
T ss_pred             CCEEEEEEEeCCC
Confidence            9999999765433

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=96.98  E-value=0.0051  Score=40.85  Aligned_cols=71  Identities=20%  Similarity=0.360  Sum_probs=41.9

Q ss_pred             ceEEeCCCcEEEEEEEeeeCCC--EEEEEeC--CEEe------ecc--------CCccEEEe-cCCcEEEEEeecCCCCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPEP--RIEWYKD--GSLV------SAE--------IGSHRILL-PAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~--g~~l------~~~--------~~~~~~~~-~~~~l~~~~vi~~v~~~  200 (238)
                      ...+++|+++.|.|.+.|....  .+.|++.  |+.+      ...        ..++.... +.....+.+-|..++.+
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~e   88 (120)
T d1dn0b1           9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA   88 (120)
T ss_dssp             CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccc
Confidence            4567889999999999887653  5789873  2111      111        01122221 11211122237888999


Q ss_pred             CCeEEEEEEEe
Q psy18191        201 DSGVYWCVARN  211 (238)
Q Consensus       201 d~G~Y~C~a~N  211 (238)
                      |++.|.| |..
T Consensus        89 DtA~YYC-Ar~   98 (120)
T d1dn0b1          89 DTAVYYC-ARP   98 (120)
T ss_dssp             GCEEEEE-EEC
T ss_pred             cccEEEE-Eee
Confidence            9999999 543

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00027  Score=46.18  Aligned_cols=44  Identities=14%  Similarity=0.039  Sum_probs=32.1

Q ss_pred             cCCCccEEEeccccccccce--------------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLPQSKQG--------------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~g--------------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..|.|.+.|++++..+....              ..-|.+..+...|+|.|+|.+.|.
T Consensus        27 G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   84 (103)
T d1wwbx_          27 GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNE   84 (103)
T ss_dssp             CSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECS
T ss_pred             EeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEecc
Confidence            46788999999988665432              124667788888888888877774

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=96.96  E-value=0.00028  Score=45.86  Aligned_cols=43  Identities=21%  Similarity=0.286  Sum_probs=32.2

Q ss_pred             CCCccEEEeccccccccce----------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQG----------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g----------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.|.+.||+++.++....          ...|.+.++...|.|.|+|.+.|.
T Consensus        35 ~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   87 (102)
T d1fhga_          35 YPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNS   87 (102)
T ss_dssp             ESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             ccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEEC
Confidence            4678899999987665432          346778888888888888877664

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=96.96  E-value=0.00015  Score=46.04  Aligned_cols=42  Identities=10%  Similarity=-0.062  Sum_probs=32.5

Q ss_pred             CCCccEEEeccccccccce---------EEEEEcCCCCCCCCCceEEEeCC
Q psy18191         61 YPKPICLRFQDLLPQSKQG---------LMYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g---------~~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      .|.|.+.||+++.++....         ...|.+.++.++|+|.|+|.+.+
T Consensus        27 ~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n   77 (89)
T d1tiua_          27 EPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN   77 (89)
T ss_dssp             SSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSS
T ss_pred             CCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECc
Confidence            4567889999998665432         35788999999999999976554

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00025  Score=46.84  Aligned_cols=83  Identities=20%  Similarity=0.358  Sum_probs=48.6

Q ss_pred             cCCEEEeC-CCceEEeCCCcEEEEEEEeee-CCC-EEEEEeCCEEeeccCC---ccEEE--ecCCcEEEEEeecCCCCCC
Q psy18191        130 RVPRITEH-PASAVVPRHEPTTLNCKADGY-PEP-RIEWYKDGSLVSAEIG---SHRIL--LPAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       130 ~~P~i~~~-~~~~~~~~G~~~~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~---~~~~~--~~~~~l~~~~vi~~v~~~d  201 (238)
                      .+|.+... |....+..++.+.|.|.+.|. |.. .|.|+++|..+.....   .....  ..+|+......+. +..++
T Consensus         3 ~~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~-v~~~~   81 (108)
T d1ow0a2           3 FRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILR-VAAED   81 (108)
T ss_dssp             CCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEE-EEHHH
T ss_pred             CCCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEE-EcHHH
Confidence            46666543 333344568899999999886 443 7999999998864311   01111  1244444333221 13322


Q ss_pred             ---CeEEEEEEEeCC
Q psy18191        202 ---SGVYWCVARNEL  213 (238)
Q Consensus       202 ---~G~Y~C~a~N~~  213 (238)
                         ...|+|.+....
T Consensus        82 w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          82 WKKGDTFSCMVGHEA   96 (108)
T ss_dssp             HHHTCCEEEEEECTT
T ss_pred             hCCCCEEEEEEEeCC
Confidence               458999998754

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.89  E-value=0.00042  Score=45.17  Aligned_cols=68  Identities=16%  Similarity=0.297  Sum_probs=40.3

Q ss_pred             CCcEEEEEEEeeeCC--CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeec--CCCCCCCeEEEEEEEeCC
Q psy18191        146 HEPTTLNCKADGYPE--PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVH--GKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       146 G~~~~L~C~~~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~--~v~~~d~G~Y~C~a~N~~  213 (238)
                      .+.+.|.|.+.|.-+  -.++|+++|..+............+|+......+.  .........|+|.+.-..
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            567899999988754  46999999987653211111233456554433221  111223447999998754

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=96.88  E-value=0.00018  Score=46.43  Aligned_cols=43  Identities=9%  Similarity=0.105  Sum_probs=33.2

Q ss_pred             CCCccEEEeccccccccce----------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQG----------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g----------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.|.+.||+++.++...+          ...|.+.++..+|+|.|+|.+.|.
T Consensus        32 ~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   84 (97)
T d3dara1          32 NPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE   84 (97)
T ss_dssp             ESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEET
T ss_pred             ECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEEC
Confidence            5678999999988654321          236788899999999999888774

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0011  Score=42.30  Aligned_cols=41  Identities=5%  Similarity=-0.103  Sum_probs=29.8

Q ss_pred             CCccEEEeccccccccceE------EEEEcCCCCCCCCCceEEEeCC
Q psy18191         62 PKPICLRFQDLLPQSKQGL------MYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~g~------~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      +.+++.|+|++.++.....      ..|.+.++..+|+|.|+|.+.|
T Consensus        35 ~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T d1n26a1          35 DNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAG   81 (93)
T ss_dssp             CCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESSS
T ss_pred             CCceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEECC
Confidence            3468999999886644321      2477788888999999976665

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00053  Score=43.85  Aligned_cols=41  Identities=10%  Similarity=-0.116  Sum_probs=31.7

Q ss_pred             CCccEEEeccccccccc----------eEEEEEcCCCCCCCCCceEEEeCC
Q psy18191         62 PKPICLRFQDLLPQSKQ----------GLMYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~----------g~~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      |.+.+.||+++..+..+          +...|.+.++...|+|.|+|.+.+
T Consensus        33 p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n   83 (94)
T d1pd6a_          33 HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG   83 (94)
T ss_dssp             SSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred             CCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee
Confidence            56788999998865432          145788899999999999987655

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.87  E-value=0.00043  Score=44.10  Aligned_cols=44  Identities=9%  Similarity=-0.052  Sum_probs=34.1

Q ss_pred             cCCCccEEEeccccccccc---------eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLPQSKQ---------GLMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~---------g~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..|.|.+.|++++..+...         +...|.+.++..+|+|.|+|.+.|.
T Consensus        28 g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~   80 (93)
T d1wiua_          28 GAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNE   80 (93)
T ss_dssp             CCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred             EecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEEC
Confidence            3567889999998755432         1357888999999999999888774

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00079  Score=43.76  Aligned_cols=68  Identities=22%  Similarity=0.460  Sum_probs=41.5

Q ss_pred             CCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCC--CC-eEEEEEEEeCC
Q psy18191        145 RHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDT--DS-GVYWCVARNEL  213 (238)
Q Consensus       145 ~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~--d~-G~Y~C~a~N~~  213 (238)
                      .++.+.|.|.+.|. |. -.++|++||...............+|+......+.- ..+  +. -.|+|.+....
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v-~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV-DKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEE-EHHHHHTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEE-CHHHcCCCCEEEEEEEeCC
Confidence            46789999999986 43 479999999876532111122334565554333221 222  23 36999999754

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00069  Score=42.81  Aligned_cols=43  Identities=9%  Similarity=-0.007  Sum_probs=32.3

Q ss_pred             CCCccEEEeccccccccce-----------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQG-----------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g-----------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.|.+.|++++.++....           ...|.+.++..+|+|.|+|.+.|.
T Consensus        23 ~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   76 (91)
T d1rhfa1          23 MEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDG   76 (91)
T ss_dssp             CSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSC
T ss_pred             cCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEEC
Confidence            5678899999988654332           235778888889999999887764

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.86  E-value=0.0024  Score=42.29  Aligned_cols=71  Identities=25%  Similarity=0.525  Sum_probs=42.3

Q ss_pred             CceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CE------EeeccCC---------ccEEEe-c--CCcEEEEEeecC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GS------LVSAEIG---------SHRILL-P--AGSLFFLSLVHG  196 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~------~l~~~~~---------~~~~~~-~--~~~l~~~~vi~~  196 (238)
                      ....+++|+++.|.|.+.|...  -.+.|++.  |+      .|.....         ++.... +  ..++.+  -|..
T Consensus         8 g~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL--~~~~   85 (118)
T d1nlbh1           8 GPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYL--QINS   85 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEE--EECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEe--eeee
Confidence            3466789999999999987653  45888863  21      1111111         111111 1  122222  2778


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy18191        197 KKDTDSGVYWCVARNE  212 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N~  212 (238)
                      ++.+|++.|.| |...
T Consensus        86 L~~eDtAvYYC-Ar~~  100 (118)
T d1nlbh1          86 LKNEDTATYFC-ARFL  100 (118)
T ss_dssp             CCGGGCEEEEE-EEEC
T ss_pred             cccCcceEEEE-eeeC
Confidence            89999999999 5443

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=96.85  E-value=0.00048  Score=43.54  Aligned_cols=44  Identities=14%  Similarity=0.018  Sum_probs=33.4

Q ss_pred             cCCCccEEEeccccccccceE----EEEEcCCCCCCCCCceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLPQSKQGL----MYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~g~----~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..|.|.+.|++++.++.....    ..|.+.++...|+|.|+|.+.|.
T Consensus        29 g~P~p~v~W~~~~~~i~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~   76 (89)
T d1biha4          29 GLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNE   76 (89)
T ss_dssp             EESCCCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEET
T ss_pred             EeCCCEEEEEeCCccCccccEEEeeeeEEECCCChhhCEEEEEEEEEC
Confidence            356788999999987654322    24778899999999999887774

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.0009  Score=43.24  Aligned_cols=43  Identities=9%  Similarity=-0.065  Sum_probs=33.6

Q ss_pred             CCCccEEEeccccccccce---------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQG---------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g---------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.+.+.|++++..+....         ...|.+.++...|+|.|+|.+.|.
T Consensus        27 ~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   78 (101)
T d2cqva1          27 TQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENK   78 (101)
T ss_dssp             SSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECS
T ss_pred             cCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEEC
Confidence            4677899999988664432         346888899999999999888774

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.81  E-value=0.00038  Score=44.06  Aligned_cols=44  Identities=16%  Similarity=0.081  Sum_probs=33.4

Q ss_pred             cCCCccEEEeccccccccceE-----EEEEcCCCCCCCCCceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLPQSKQGL-----MYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~g~-----~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..|.|.+.|++++.++.....     ..|.+.++..+|+|.|+|.+.|.
T Consensus        27 g~P~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   75 (89)
T d1cs6a4          27 GKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENK   75 (89)
T ss_dssp             EESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEET
T ss_pred             EEcCCEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeC
Confidence            356789999999986654331     25777888899999999887774

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.0012  Score=43.23  Aligned_cols=44  Identities=11%  Similarity=-0.028  Sum_probs=28.8

Q ss_pred             cCCCccEEEeccccccccce----------------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLPQSKQG----------------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~g----------------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..|.|.+.|++++.++....                ...|.+.++...|+|.|+|.+.|.
T Consensus        26 G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~   85 (107)
T d1he7a_          26 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP   85 (107)
T ss_dssp             CSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEET
T ss_pred             EecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeC
Confidence            46788999999998765432                123555666666666666666553

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.79  E-value=0.0079  Score=39.84  Aligned_cols=72  Identities=19%  Similarity=0.381  Sum_probs=42.1

Q ss_pred             ceEEeCCCcEEEEEEEeeeCCC--EEEEEeC--CE---Ee---ecc-------C-CccEEEe-cCCcEEEEEeecCCCCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPEP--RIEWYKD--GS---LV---SAE-------I-GSHRILL-PAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~--g~---~l---~~~-------~-~~~~~~~-~~~~l~~~~vi~~v~~~  200 (238)
                      .-.+.+|+++.|.|.+.|....  .+.|++.  |+   .|   ..+       . .++.... +.....+.+-|..++.+
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~e   87 (119)
T d1kxvc_           8 GGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPD   87 (119)
T ss_dssp             CEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcC
Confidence            3457889999999999887643  4778863  11   11   110       0 0112111 11111222237888999


Q ss_pred             CCeEEEEEEEe
Q psy18191        201 DSGVYWCVARN  211 (238)
Q Consensus       201 d~G~Y~C~a~N  211 (238)
                      |++.|.|-+..
T Consensus        88 DtA~YYCAr~~   98 (119)
T d1kxvc_          88 DTAMYYCKPSL   98 (119)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CcceEeeeecc
Confidence            99999996554

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.71  E-value=0.0036  Score=41.72  Aligned_cols=83  Identities=14%  Similarity=0.155  Sum_probs=51.0

Q ss_pred             cCCEEEeC-CCce-EEeCCCcEEEEEEEeee-CC---CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCC--C
Q psy18191        130 RVPRITEH-PASA-VVPRHEPTTLNCKADGY-PE---PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDT--D  201 (238)
Q Consensus       130 ~~P~i~~~-~~~~-~~~~G~~~~L~C~~~g~-P~---p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~--d  201 (238)
                      ..|.+... |... ....++.+.|.|.+.|. |.   -.++|+++|..+............+|+......+. +..+  +
T Consensus        14 ~~PsV~i~pPs~~e~~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~-v~~~eW~   92 (119)
T d1igtb3          14 GGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALP-IQHQDWM   92 (119)
T ss_dssp             CCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEE-CCHHHHH
T ss_pred             cCCEEEEECCChHHhcccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEE-EeHHHhC
Confidence            45665543 3322 23457889999999886 42   46889999988764322233344566655544433 2443  2


Q ss_pred             C-eEEEEEEEeCC
Q psy18191        202 S-GVYWCVARNEL  213 (238)
Q Consensus       202 ~-G~Y~C~a~N~~  213 (238)
                      . ..|+|.+....
T Consensus        93 ~g~~ytC~V~H~~  105 (119)
T d1igtb3          93 SGKEFKCKVNNKD  105 (119)
T ss_dssp             TTCEEEEEEECTT
T ss_pred             CCCeEEEEEEECC
Confidence            4 47999999754

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.0032  Score=41.98  Aligned_cols=23  Identities=4%  Similarity=0.046  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCC
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..|.|.++..+|+|.|+|.+.|.
T Consensus        94 ~~L~I~~v~~~D~G~Y~C~a~N~  116 (130)
T d1gxea_          94 SIFTVEGAEKEDEGVYTVTVKNP  116 (130)
T ss_dssp             EEEECSCCCTTTCEEEEEEEECS
T ss_pred             EEEEECcCChhcCEEEEEEEEEC
Confidence            45788888888888888887774

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.69  E-value=0.0073  Score=40.18  Aligned_cols=71  Identities=17%  Similarity=0.402  Sum_probs=40.9

Q ss_pred             eEEeCCCcEEEEEEEeeeC----CCEEEEEeC--CEE---ee---cc--------CCccEEEe-cCCcEEEEEeecCCCC
Q psy18191        141 AVVPRHEPTTLNCKADGYP----EPRIEWYKD--GSL---VS---AE--------IGSHRILL-PAGSLFFLSLVHGKKD  199 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~~g~P----~p~i~W~~~--g~~---l~---~~--------~~~~~~~~-~~~~l~~~~vi~~v~~  199 (238)
                      ..+.+|+++.|.|.+.|..    ...+.|++.  |+.   +.   ..        ..++.... ......+.+.|..++.
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~   89 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDP   89 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCG
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeee
Confidence            4467799999999987653    246889973  221   11   00        01112111 1111122233788899


Q ss_pred             CCCeEEEEEEEe
Q psy18191        200 TDSGVYWCVARN  211 (238)
Q Consensus       200 ~d~G~Y~C~a~N  211 (238)
                      +|++.|.|-...
T Consensus        90 eDsAvYyCAr~~  101 (120)
T d2agjh1          90 VDTATYYCARTS  101 (120)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEeeEecC
Confidence            999999996443

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.0012  Score=42.94  Aligned_cols=76  Identities=14%  Similarity=0.220  Sum_probs=44.7

Q ss_pred             CCCceEEeCCCcEEEEEEEeee-CC---CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCC---CeEEEEEE
Q psy18191        137 HPASAVVPRHEPTTLNCKADGY-PE---PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTD---SGVYWCVA  209 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~-P~---p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d---~G~Y~C~a  209 (238)
                      .|....+..++.++|.|.+.|. |.   -.+.|++++...............+++......+. +..++   ...|+|.+
T Consensus         7 pPs~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~-v~~~~w~~g~~~tC~V   85 (103)
T d1fp5a1           7 RPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLP-VGTRDWIEGETYQCRV   85 (103)
T ss_dssp             CCCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEE-CCHHHHHTTCCEEEEE
T ss_pred             CcCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEE-EcHHHhCCCCeEEEEE
Confidence            3443444567889999999985 43   25778888765543211222233456555444433 23333   45799999


Q ss_pred             EeCC
Q psy18191        210 RNEL  213 (238)
Q Consensus       210 ~N~~  213 (238)
                      ....
T Consensus        86 ~H~~   89 (103)
T d1fp5a1          86 THPH   89 (103)
T ss_dssp             ECSS
T ss_pred             EECC
Confidence            9854

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.68  E-value=0.0074  Score=39.95  Aligned_cols=68  Identities=25%  Similarity=0.510  Sum_probs=41.3

Q ss_pred             CceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eeccCC---------ccEEEe---cCCcEEEEEeecC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAEIG---------SHRILL---PAGSLFFLSLVHG  196 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~~~---------~~~~~~---~~~~l~~~~vi~~  196 (238)
                      -...+++|+++.|.|.+.|...  -.+.|++.  |+.      |.....         ++....   ...++.+.  |..
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~--~~s   85 (119)
T d1eapb1           8 GTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQ--LNS   85 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEE--ECS
T ss_pred             CCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEee--eec
Confidence            4566789999999999988654  35889863  211      111101         111111   12223322  678


Q ss_pred             CCCCCCeEEEEE
Q psy18191        197 KKDTDSGVYWCV  208 (238)
Q Consensus       197 v~~~d~G~Y~C~  208 (238)
                      ++.+|++.|.|-
T Consensus        86 L~~eDTAvYYCA   97 (119)
T d1eapb1          86 LTSEDSAVYFCK   97 (119)
T ss_dssp             CCGGGCEEEEEE
T ss_pred             ccCCcceEEEEE
Confidence            899999999994

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.68  E-value=0.0018  Score=41.98  Aligned_cols=70  Identities=20%  Similarity=0.246  Sum_probs=40.7

Q ss_pred             eCCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEee--cCCCCCCCeEEEEEEEeCCCce
Q psy18191        144 PRHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLV--HGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       144 ~~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi--~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      ..++.+.|.|.+.|. |. -.|.|.+++...........  ..+|.......+  ..-.. +.|.|+|.+.......
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~--~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~~~   91 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAV--LQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKSST   91 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCE--EETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGGTE
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeee--cCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCCCe
Confidence            457899999999885 43 46999887754322111111  234544333322  22222 3678999998865443

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.65  E-value=0.00079  Score=44.22  Aligned_cols=83  Identities=16%  Similarity=0.264  Sum_probs=46.1

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccCCcc--EEEecCCcEEEEEeecCCCCCC---C
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEIGSH--RILLPAGSLFFLSLVHGKKDTD---S  202 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~--~~~~~~~~l~~~~vi~~v~~~d---~  202 (238)
                      .+|.+...+.......++.+.|.|.+.|. |. -.|+|++||..+.......  .....+|+......+. +..+|   .
T Consensus         4 ~~P~V~l~~ps~~~~~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~-v~~~~W~~g   82 (107)
T d1mjul2           4 AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLT-LTKDEYERH   82 (107)
T ss_dssp             BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEE-EEHHHHHTC
T ss_pred             cCCEEEEECCCHHHhcCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEE-ECHHHhCCC
Confidence            45655443322222246679999999886 43 4799999998876320000  0112345554333221 13333   4


Q ss_pred             eEEEEEEEeCC
Q psy18191        203 GVYWCVARNEL  213 (238)
Q Consensus       203 G~Y~C~a~N~~  213 (238)
                      ..|+|.+....
T Consensus        83 ~~ytC~V~H~~   93 (107)
T d1mjul2          83 NSYTCEATHKT   93 (107)
T ss_dssp             CEEEEEEECTT
T ss_pred             CEEEEEEEECC
Confidence            57999998654

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0004  Score=43.61  Aligned_cols=43  Identities=12%  Similarity=0.024  Sum_probs=28.1

Q ss_pred             CCCc-cEEEeccccccccceEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKP-ICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~-~~~w~~~~~~~~~~g~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.| ++.||+++.++.......+.+.....+|+|.|+|.+.|.
T Consensus        28 ~P~P~~i~W~k~g~~i~~~~~~~~~l~~~~~~d~G~Y~C~A~N~   71 (85)
T d1rhfa2          28 PPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNL   71 (85)
T ss_dssp             SSSCCEEEEEETTEECSCSEESSEEEEECCCSSCEEEEEEEEET
T ss_pred             CCcceEEEEEECCEECCCCCCcceEEecCCccccEEEEEEEEcC
Confidence            4566 799999998766544322233344456788888777664

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0013  Score=40.46  Aligned_cols=63  Identities=27%  Similarity=0.336  Sum_probs=37.4

Q ss_pred             CCCcEEEEEEEeeeCC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEE
Q psy18191        145 RHEPTTLNCKADGYPE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL  223 (238)
Q Consensus       145 ~G~~~~L~C~~~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L  223 (238)
                      .|+.+.|.|..   |. -.|.|.+++..-..        -.+.++.+. + +  ...|+|+|+|. .  .|+.-+ ...|
T Consensus        20 ~~~~V~L~C~t---~eE~~I~W~kd~~se~~--------~~GntltV~-V-k--E~~~aGnYTCh-k--~g~~Ln-ht~l   80 (87)
T d3d85d1          20 PGEMVVLTCDT---PEEDGITWTLDQSSEVL--------GSGKTLTIQ-V-K--EFGDAGQYTCH-K--GGEVLS-HSLL   80 (87)
T ss_dssp             CCEEEEEECSS---SCCSSCEEEETTCCCCC--------EESSEEEEE-E-C--SGGGCEEEEEE-E--TTEEEE-EEEE
T ss_pred             CccEEEEecCC---CcccccEEeeCCccccc--------cCCCEEEEE-E-E--eccCCcceeEe-C--CCcEee-eEEE
Confidence            35678899953   32 35999999754110        123444443 2 1  44689999997 3  377765 4444


Q ss_pred             EEc
Q psy18191        224 DVA  226 (238)
Q Consensus       224 ~V~  226 (238)
                      .++
T Consensus        81 Lih   83 (87)
T d3d85d1          81 LLH   83 (87)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.62  E-value=0.0019  Score=40.45  Aligned_cols=43  Identities=7%  Similarity=-0.064  Sum_probs=31.8

Q ss_pred             CCCccEEEeccccccccceE----EEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQGL----MYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g~----~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.+.+.|++++........    ..|.+.++...|+|.|+|.+.|.
T Consensus        30 ~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~   76 (89)
T d1gl4b_          30 SPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNM   76 (89)
T ss_dssp             SSCCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCCCEEEEecCCceeeccccEeeceEEEEecCCcccCEEEEEEEEEC
Confidence            56788999998874433221    25778899999999999888774

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=96.60  E-value=0.012  Score=38.79  Aligned_cols=72  Identities=17%  Similarity=0.333  Sum_probs=42.6

Q ss_pred             CceEEeCCCcEEEEEEEeeeCCC--EEEEEeC--CEEe------ecc--------CCccEEEe-cCCcEEEEEeecCCCC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEP--RIEWYKD--GSLV------SAE--------IGSHRILL-PAGSLFFLSLVHGKKD  199 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~--g~~l------~~~--------~~~~~~~~-~~~~l~~~~vi~~v~~  199 (238)
                      -...+++|+++.|.|.+.|....  .+.|++.  |+.+      ...        ..++.... +.....+.+.|..++.
T Consensus         8 G~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~   87 (116)
T d7fabh1           8 GPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTA   87 (116)
T ss_dssp             CCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccc
Confidence            34567889999999999886543  5888863  2111      111        01121111 1111122223788899


Q ss_pred             CCCeEEEEEEE
Q psy18191        200 TDSGVYWCVAR  210 (238)
Q Consensus       200 ~d~G~Y~C~a~  210 (238)
                      +|++.|.|-..
T Consensus        88 eDtAvYyCAr~   98 (116)
T d7fabh1          88 ADTAVYYCARN   98 (116)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEEeeee
Confidence            99999999654

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.57  E-value=0.0017  Score=42.16  Aligned_cols=69  Identities=14%  Similarity=0.201  Sum_probs=42.7

Q ss_pred             eCCCcEEEEEEEeee-CC---CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCC--Ce-EEEEEEEeCC
Q psy18191        144 PRHEPTTLNCKADGY-PE---PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTD--SG-VYWCVARNEL  213 (238)
Q Consensus       144 ~~G~~~~L~C~~~g~-P~---p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d--~G-~Y~C~a~N~~  213 (238)
                      ..+..+.|.|.+.|. |.   -.+.|+++|..+............+|.......+. +..++  .| .|+|.+....
T Consensus        14 ~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~-v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          14 GGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELP-IVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             TSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEE-CCHHHHHTTCCEEEEEECSS
T ss_pred             ccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEE-ECHHHhcCCCEEEEEEEeCC
Confidence            356778999999885 43   37889999987654311222334456554444332 24432  55 5999998754

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.0066  Score=38.67  Aligned_cols=77  Identities=13%  Similarity=0.187  Sum_probs=48.7

Q ss_pred             CceEEeCCCcEEEEEEEeeeCCCEE-EEEeCCEEeeccCCccEEEe-cCCcEEEEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEPRI-EWYKDGSLVSAEIGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA  216 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p~i-~W~~~g~~l~~~~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~  216 (238)
                      .-+.+.+|+++.+.|.+. +|...+ .|..++..+...  ...+.. ....+.    |+.+...+.|.|.|.|.-. |..
T Consensus        13 ~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~--g~~v~~Dpk~Gf~----I~~~~~~~~g~y~C~a~~~-g~~   84 (95)
T d1fltx_          13 EIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPD--GKRIIWDSRKGFI----ISNATYKEIGLLTCEATVN-GHL   84 (95)
T ss_dssp             EEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCC--SSSEEEETTTEEE----ESSCCGGGCEEEEEEEEET-TEE
T ss_pred             CEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCC--CCEEEECCCCCEE----EeCCCcccCeEEEEEEEEC-CEE
Confidence            346788999999999986 455454 465566666542  222222 222233    6677999999999999765 444


Q ss_pred             eEEEEEEE
Q psy18191        217 RSKNATLD  224 (238)
Q Consensus       217 ~s~~~~L~  224 (238)
                      . .+..|.
T Consensus        85 ~-~S~yl~   91 (95)
T d1fltx_          85 Y-KTNYLT   91 (95)
T ss_dssp             E-EEEEEE
T ss_pred             E-EEEEEE
Confidence            3 244443

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.56  E-value=0.0053  Score=40.38  Aligned_cols=71  Identities=25%  Similarity=0.518  Sum_probs=42.7

Q ss_pred             CCCceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eeccC---------CccEEE-ecC--CcEEEEEee
Q psy18191        137 HPASAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAEI---------GSHRIL-LPA--GSLFFLSLV  194 (238)
Q Consensus       137 ~~~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~~---------~~~~~~-~~~--~~l~~~~vi  194 (238)
                      .+....+++|+++.|.|++.|...  -.+.|++.  |+.      |....         .++... .+.  ..+.+.  |
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~--~   83 (116)
T d1mjuh1           6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQ--L   83 (116)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE--E
T ss_pred             eECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEec--c
Confidence            345577889999999999988654  34788862  211      11110         111111 111  222222  6


Q ss_pred             cCCCCCCCeEEEEEE
Q psy18191        195 HGKKDTDSGVYWCVA  209 (238)
Q Consensus       195 ~~v~~~d~G~Y~C~a  209 (238)
                      ..++.+|++.|.|-.
T Consensus        84 ~sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          84 SSLTSDDSAVYYCAN   98 (116)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCCCCceEEEEcc
Confidence            788999999999954

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.56  E-value=0.0023  Score=41.47  Aligned_cols=83  Identities=16%  Similarity=0.194  Sum_probs=42.9

Q ss_pred             cCCEEE-eCCCceEEeCCCcEEEEEEEeeeCC--CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCC--CCeE
Q psy18191        130 RVPRIT-EHPASAVVPRHEPTTLNCKADGYPE--PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDT--DSGV  204 (238)
Q Consensus       130 ~~P~i~-~~~~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~--d~G~  204 (238)
                      .+|.+. ..|... ...++.+.|.|.+.|.-+  -.|.|..++.........  ....+|.......+. +..+  +.+.
T Consensus         4 s~PsV~~l~p~~~-~~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~--~~~~~g~ys~~S~L~-v~~~~w~~~~   79 (102)
T d1mjuh2           4 TAPSVYPLAPVCG-DTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFP--AVLQSDLYTLSSSVT-VTSSTWPSQS   79 (102)
T ss_dssp             BCCEEEEECCCC-------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECC--CEEETTEEEEEEEEE-ECTTTTTTSC
T ss_pred             cCCEEEEECCCcc-ccCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecc--cccCCCCEEEEEEEE-EehhHcCCce
Confidence            356554 334332 245788999999998643  369997766332211111  122355554433322 1222  2568


Q ss_pred             EEEEEEeCCCce
Q psy18191        205 YWCVARNELGFA  216 (238)
Q Consensus       205 Y~C~a~N~~G~~  216 (238)
                      |+|.+....+..
T Consensus        80 ytC~V~H~~~~~   91 (102)
T d1mjuh2          80 ITCNVAHPASST   91 (102)
T ss_dssp             CEEEEEEGGGTE
T ss_pred             EEEEEEECCCCE
Confidence            999999865443

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.56  E-value=0.0074  Score=39.87  Aligned_cols=75  Identities=16%  Similarity=0.367  Sum_probs=44.5

Q ss_pred             ceEEeCCCcEEEEEEEeeeCCC--EEEEEeC--CEE------eeccC---------CccEEEe-cCCcEEEEEeecCCCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPEP--RIEWYKD--GSL------VSAEI---------GSHRILL-PAGSLFFLSLVHGKKD  199 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~--g~~------l~~~~---------~~~~~~~-~~~~l~~~~vi~~v~~  199 (238)
                      ...+++|+++.|.|.+.|....  .+.|++.  |+.      |....         .++.... +.....+..-|..++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence            4567899999999999886543  5788863  211      11110         1111111 1222222223788899


Q ss_pred             CCCeEEEEEEEeCCC
Q psy18191        200 TDSGVYWCVARNELG  214 (238)
Q Consensus       200 ~d~G~Y~C~a~N~~G  214 (238)
                      +|++.|.|-.....+
T Consensus        89 eDtAvYYCAr~~~~~  103 (118)
T d2fbjh1          89 EDTALYYCARLHYYG  103 (118)
T ss_dssp             GGCEEEEEEEEETTT
T ss_pred             CcceEEEeeEecCCC
Confidence            999999997665433

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.55  E-value=0.0071  Score=39.85  Aligned_cols=71  Identities=18%  Similarity=0.483  Sum_probs=42.8

Q ss_pred             CceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CE------EeeccC---------CccEEEe---cCCcEEEEEeecC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GS------LVSAEI---------GSHRILL---PAGSLFFLSLVHG  196 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~------~l~~~~---------~~~~~~~---~~~~l~~~~vi~~  196 (238)
                      -...+++|+++.|.|.+.|...  -.+.|++.  |+      .|....         .++....   ...++.+.  |..
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~--m~~   85 (117)
T d1jpth1           8 GGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQ--MNS   85 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEE--ECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEec--ccc
Confidence            3466789999999999988653  46888863  21      111110         1111111   12223222  678


Q ss_pred             CCCCCCeEEEEEEEe
Q psy18191        197 KKDTDSGVYWCVARN  211 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N  211 (238)
                      ++.+|++.|.|-...
T Consensus        86 L~~eDTAvYYCAr~~  100 (117)
T d1jpth1          86 LRAEDTAVYYCARDT  100 (117)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             cCCCCceEEEEeecC
Confidence            899999999996543

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.004  Score=37.87  Aligned_cols=53  Identities=21%  Similarity=0.387  Sum_probs=36.1

Q ss_pred             CCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        146 HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      -+.+.|.|.   .....|+|++++..+...      .....++-+-..    ...-.|.|.|.+.+
T Consensus        17 dg~V~L~Cn---~~~k~i~W~kdg~~i~~~------~~~~ktlnLG~~----~~DPRG~Y~C~~~~   69 (81)
T d1sy6a1          17 DGSVLLTCD---AEAKNITWFKDGKMIGFL------TEDKKKWNLGSN----AKDPRGMYQCKGSQ   69 (81)
T ss_dssp             SSEEEEEEC---SCSSEEEEEETTEEEEEE------ESSCCCEEEEEG----GGCCEEEEEEESSS
T ss_pred             CCeEEEEeC---CCCcEEEEecCCeEeecc------cCCcceeecCCc----ccCCCcceEcCCCC
Confidence            457899995   344589999999877631      123455665554    55668999996543

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.55  E-value=0.0096  Score=38.71  Aligned_cols=69  Identities=20%  Similarity=0.511  Sum_probs=41.8

Q ss_pred             CceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eecc--C---------CccEEEe-c--CCcEEEEEee
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAE--I---------GSHRILL-P--AGSLFFLSLV  194 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~--~---------~~~~~~~-~--~~~l~~~~vi  194 (238)
                      -...+++|+++.|.|.+.|...  -.+.|++.  |+.      |...  .         .++.... .  ..++.+  -|
T Consensus         8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L--~i   85 (109)
T d2ck0h1           8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYL--QM   85 (109)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEE--EE
T ss_pred             CCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEe--cc
Confidence            3466789999999999987654  35888862  211      1110  0         0121111 1  223333  27


Q ss_pred             cCCCCCCCeEEEEEE
Q psy18191        195 HGKKDTDSGVYWCVA  209 (238)
Q Consensus       195 ~~v~~~d~G~Y~C~a  209 (238)
                      ..++.+|++.|.|-.
T Consensus        86 ~sL~~eDTAvYYCAr  100 (109)
T d2ck0h1          86 NNLKTEDTGIYYCVR  100 (109)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cCCCHhHCEEEEEEE
Confidence            788999999999964

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.53  E-value=0.012  Score=38.75  Aligned_cols=71  Identities=21%  Similarity=0.428  Sum_probs=43.0

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eeccCC--------ccEEEe--c--CCcEEEEEeec
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAEIG--------SHRILL--P--AGSLFFLSLVH  195 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~~~--------~~~~~~--~--~~~l~~~~vi~  195 (238)
                      +....+++|+++.|.|.+.|...  -.+.|++.  |+.      |.....        ..++.+  +  ...+.+  -|.
T Consensus         6 sg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L--~m~   83 (117)
T d1um5h1           6 SGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYL--ELS   83 (117)
T ss_dssp             CCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEE--EEC
T ss_pred             ECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEee--ccc
Confidence            34567889999999999988654  35889873  221      111110        012211  1  222222  267


Q ss_pred             CCCCCCCeEEEEEEE
Q psy18191        196 GKKDTDSGVYWCVAR  210 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~  210 (238)
                      .++.+|++.|.|-..
T Consensus        84 sL~~eDtAvYYCAr~   98 (117)
T d1um5h1          84 SLTSEDSAVYYCARS   98 (117)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeec
Confidence            889999999999643

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=96.53  E-value=0.00065  Score=43.63  Aligned_cols=44  Identities=9%  Similarity=-0.056  Sum_probs=32.3

Q ss_pred             CCCccEEEeccccccccc---e--------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQ---G--------LMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~---g--------~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .|.+.+.|++++..+...   .        ...|.+..+..+|+|.|+|.+.|..
T Consensus        30 ~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   84 (97)
T d1biha3          30 NPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGV   84 (97)
T ss_dssp             SSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSS
T ss_pred             ecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECC
Confidence            567789999998755321   1        1357888888999999998887743

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0011  Score=41.89  Aligned_cols=41  Identities=10%  Similarity=-0.025  Sum_probs=30.1

Q ss_pred             CCccEEEeccccccccc-----------eEEEEEcCCCCCCCCCceEEEeCC
Q psy18191         62 PKPICLRFQDLLPQSKQ-----------GLMYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~-----------g~~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      |.+.+.||+++.++...           +...|.+.++.++|+|.|+|.+.+
T Consensus        27 p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   78 (90)
T d1x44a1          27 DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG   78 (90)
T ss_dssp             SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred             CCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec
Confidence            45678999998744321           134678889999999999987655

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.52  E-value=0.017  Score=38.32  Aligned_cols=72  Identities=22%  Similarity=0.391  Sum_probs=42.7

Q ss_pred             CceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEEe------eccC---------CccEEE-ecCCcEEEEEeecCCC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSLV------SAEI---------GSHRIL-LPAGSLFFLSLVHGKK  198 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~l------~~~~---------~~~~~~-~~~~~l~~~~vi~~v~  198 (238)
                      ....+++|+++.|.|.+.|...  ..+.|++.  |+.+      ....         .++... .+.....+.+.|..++
T Consensus         8 g~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~   87 (120)
T d1pg7x1           8 GPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLT   87 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccC
Confidence            4456789999999999987643  45889873  2211      1110         111111 1112212222367889


Q ss_pred             CCCCeEEEEEEE
Q psy18191        199 DTDSGVYWCVAR  210 (238)
Q Consensus       199 ~~d~G~Y~C~a~  210 (238)
                      .+|++.|.|-..
T Consensus        88 ~eDtA~YYCAr~   99 (120)
T d1pg7x1          88 SNDSAVYYCARE   99 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEeeec
Confidence            999999999765

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.51  E-value=0.011  Score=39.04  Aligned_cols=70  Identities=20%  Similarity=0.414  Sum_probs=41.5

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEEe------eccC---------CccE-EEec--CCcEEEEEeec
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSLV------SAEI---------GSHR-ILLP--AGSLFFLSLVH  195 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~l------~~~~---------~~~~-~~~~--~~~l~~~~vi~  195 (238)
                      +....+++|+++.|.|++.|...  -.+.|++.  |+.+      ....         .++. +..+  ...+.+  -|.
T Consensus         7 sg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L--~i~   84 (117)
T d1mfah1           7 SGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYM--ELS   84 (117)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEE--EEC
T ss_pred             ECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEe--eec
Confidence            44567789999999999987543  45778762  2211      1110         0111 1111  222222  267


Q ss_pred             CCCCCCCeEEEEEE
Q psy18191        196 GKKDTDSGVYWCVA  209 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a  209 (238)
                      .++.+|++.|.|-.
T Consensus        85 ~L~~eDtAvYYCAr   98 (117)
T d1mfah1          85 SLTSEDSAVYYCTR   98 (117)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEec
Confidence            88999999999953

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=96.49  E-value=0.0027  Score=40.81  Aligned_cols=65  Identities=22%  Similarity=0.193  Sum_probs=39.9

Q ss_pred             CCcEEEEEEEeeeCCC--EEEEEeCCEEeeccC-----CccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        146 HEPTTLNCKADGYPEP--RIEWYKDGSLVSAEI-----GSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       146 G~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~-----~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      .+.++|.|.+.|.-+.  .|+|++||..+....     ........+|+......+. +...+-..|+|.+.-
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~-v~~~~~~~ytC~V~H   85 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVY-VDGGLEHVYSCRVKG   85 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEE-ECTTCGGGEEEEEEE
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEE-ECCCCCCEEEEEEEe
Confidence            4578999999998554  588999986553210     0111223456665444332 244555679999874

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.48  E-value=0.013  Score=38.57  Aligned_cols=71  Identities=17%  Similarity=0.437  Sum_probs=42.8

Q ss_pred             CceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eecc---------CCccEEEe-c--CCcEEEEEeecC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAE---------IGSHRILL-P--AGSLFFLSLVHG  196 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~---------~~~~~~~~-~--~~~l~~~~vi~~  196 (238)
                      ....+++|+++.|.|++.|...  -.+.|++.  |+.      |...         ..++.... +  ...+.+  -|..
T Consensus         8 g~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L--~i~~   85 (117)
T d1iqdb1           8 GAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYM--ELSS   85 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEE--EECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEE--eecc
Confidence            3456788999999999988643  34788873  221      1111         01111111 1  222222  2788


Q ss_pred             CCCCCCeEEEEEEEe
Q psy18191        197 KKDTDSGVYWCVARN  211 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N  211 (238)
                      ++.+|++.|.|-...
T Consensus        86 L~~eDtAvYYCA~~~  100 (117)
T d1iqdb1          86 LRSDDTAVYYCAVPD  100 (117)
T ss_dssp             CCGGGCEEEEEEECS
T ss_pred             cCcCcceEEEEeEcC
Confidence            899999999997654

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.00048  Score=44.98  Aligned_cols=43  Identities=9%  Similarity=0.054  Sum_probs=33.4

Q ss_pred             cCCCccEEEeccccccccceE------EEEEcCCCCCCCCCceEEEeCC
Q psy18191         60 FYPKPICLRFQDLLPQSKQGL------MYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~g~------~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      ..+.|.+.|++++.++...+.      ..|.|.++..+|+|.|+|.+.+
T Consensus        31 ~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   79 (103)
T d1iray2          31 NNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASY   79 (103)
T ss_dssp             TTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEE
Confidence            456789999999987654331      2578889999999999987765

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.44  E-value=0.0011  Score=45.03  Aligned_cols=83  Identities=17%  Similarity=0.326  Sum_probs=47.3

Q ss_pred             cCCEEEeC-CCceEEeCCCcEEEEEEEeeeCCC--EEEEEeCCEEeeccC--CccEEE----ecCCcEEEEEeec--CCC
Q psy18191        130 RVPRITEH-PASAVVPRHEPTTLNCKADGYPEP--RIEWYKDGSLVSAEI--GSHRIL----LPAGSLFFLSLVH--GKK  198 (238)
Q Consensus       130 ~~P~i~~~-~~~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~--~~~~~~----~~~~~l~~~~vi~--~v~  198 (238)
                      .||.+... |.......++.++|.|.+.|.-+.  .|+|+++|..+....  ......    ..+++......|.  ...
T Consensus         3 ~PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~   82 (127)
T d1ogae2           3 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATF   82 (127)
T ss_dssp             BCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHH
T ss_pred             cCCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHH
Confidence            57776653 333334456789999999886432  599999998876320  000000    1244444333222  112


Q ss_pred             CCCCe-EEEEEEEeC
Q psy18191        199 DTDSG-VYWCVARNE  212 (238)
Q Consensus       199 ~~d~G-~Y~C~a~N~  212 (238)
                      ..+.| .|+|.+.-.
T Consensus        83 W~~~g~~ytC~V~H~   97 (127)
T d1ogae2          83 WQNPRNHFRCQVQFY   97 (127)
T ss_dssp             HTCTTCEEEEEEEEC
T ss_pred             hCCCCCEEEEEEEEC
Confidence            24556 699999864

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.43  E-value=0.0019  Score=40.60  Aligned_cols=53  Identities=23%  Similarity=0.444  Sum_probs=35.3

Q ss_pred             eCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191        144 PRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA  209 (238)
Q Consensus       144 ~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a  209 (238)
                      ..|.+|.|.|...+.  -.|.|.+++..+....        +..|.+...   ...+++|.|.|..
T Consensus        12 ISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~--------~~~L~L~~F---SE~e~SGyY~C~~   64 (100)
T d1jbja2          12 ISGTSVELTCPLDSD--ENLKWEKNGQELPQKH--------DKHLVLQDF---SEVEDSGYYVCYT   64 (100)
T ss_dssp             EETTEEEEECSSCCC--TTCEEEETTEEECSCC--------CSEEEEESC---CTTTSCEEEEEEC
T ss_pred             EeCCEEEEECCCCCC--CceEEeeccccCCCCC--------CcEEEEccc---cccccCcceEEec
Confidence            459999999986543  4699999998877421        112222211   2568999999963

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.40  E-value=0.011  Score=39.00  Aligned_cols=67  Identities=27%  Similarity=0.534  Sum_probs=40.1

Q ss_pred             ceEEeCCCcEEEEEEEeeeC--CCEEEEEeC--CEEe------eccCCc--------cEEEe--c--CCcEEEEEeecCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYP--EPRIEWYKD--GSLV------SAEIGS--------HRILL--P--AGSLFFLSLVHGK  197 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~--g~~l------~~~~~~--------~~~~~--~--~~~l~~~~vi~~v  197 (238)
                      ...+++|+++.|.|.+.|..  ...+.|++.  |+.+      ......        .++.+  +  ...+.  +.|..+
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~--L~i~~l   86 (115)
T d1f3dh1           9 PELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAF--MHLNSL   86 (115)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEE--EEECSC
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeE--eeeeec
Confidence            45578899999999998753  345888863  2211      111111        11111  1  22222  237888


Q ss_pred             CCCCCeEEEEE
Q psy18191        198 KDTDSGVYWCV  208 (238)
Q Consensus       198 ~~~d~G~Y~C~  208 (238)
                      +.+|++.|.|-
T Consensus        87 ~~eDtAvYYCA   97 (115)
T d1f3dh1          87 TFEDSAVYYCA   97 (115)
T ss_dssp             CGGGCEEEEEE
T ss_pred             CcCCcEEEEEe
Confidence            99999999994

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=96.38  E-value=0.013  Score=38.61  Aligned_cols=72  Identities=13%  Similarity=0.338  Sum_probs=42.2

Q ss_pred             ceEEeCCCcEEEEEEEeeeCCC--EEEEEeC--CEE---e---eccC--------CccEEE-ecCCcEEEEEeecCCCCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPEP--RIEWYKD--GSL---V---SAEI--------GSHRIL-LPAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~--g~~---l---~~~~--------~~~~~~-~~~~~l~~~~vi~~v~~~  200 (238)
                      ...+++|+++.|.|.+.|....  .+.|++.  |+.   |   ....        .++... .+.....+.+.|..++.+
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~e   88 (116)
T d1a2yb_           9 PGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTD   88 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeec
Confidence            4567889999999999886543  5778863  211   1   1110        111111 111121122237888999


Q ss_pred             CCeEEEEEEEe
Q psy18191        201 DSGVYWCVARN  211 (238)
Q Consensus       201 d~G~Y~C~a~N  211 (238)
                      |++.|.|-...
T Consensus        89 DTAvYYCAr~~   99 (116)
T d1a2yb_          89 DTARYYCARER   99 (116)
T ss_dssp             GCEEEEEEEES
T ss_pred             cceEEEEEEeC
Confidence            99999997543

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.38  E-value=0.011  Score=38.89  Aligned_cols=71  Identities=17%  Similarity=0.441  Sum_probs=41.7

Q ss_pred             ceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEEe------ecc--------CCccEEEe-cCCcEEEEEeecCCCCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSLV------SAE--------IGSHRILL-PAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~l------~~~--------~~~~~~~~-~~~~l~~~~vi~~v~~~  200 (238)
                      ...+++|+++.|.|.+.|...  -.+.|++.  |+.+      ...        ..++.... +.....+.+-|..++.+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~e   88 (117)
T d1c5db1           9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE   88 (117)
T ss_dssp             CSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccC
Confidence            456789999999999988765  35888863  2211      111        01111111 11111122226788999


Q ss_pred             CCeEEEEEEE
Q psy18191        201 DSGVYWCVAR  210 (238)
Q Consensus       201 d~G~Y~C~a~  210 (238)
                      |++.|.|-..
T Consensus        89 DtAvYYCAr~   98 (117)
T d1c5db1          89 DTAIYFCTRE   98 (117)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEecc
Confidence            9999999543

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.37  E-value=0.0032  Score=39.40  Aligned_cols=61  Identities=16%  Similarity=0.295  Sum_probs=40.4

Q ss_pred             CcEEEEEEEeeeCCC--EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191        147 EPTTLNCKADGYPEP--RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE  212 (238)
Q Consensus       147 ~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~  212 (238)
                      +.+.|.|.+.|.-++  .+.|.++|..+...  .......+|.......++   ......|+|.+.-.
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~--~~~~~~~~gtys~~s~~~---~~~~~~yTC~V~H~   76 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFD--PAIVISPSGKYNAVKLGK---YEDSNSVTCSVQHD   76 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECC--CEEEECTTSSEEEEEEEE---ETTTTTCEEEEEET
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCc--EEeeeccCCcEEEEEEEe---cCCCCEEEEEEEEC
Confidence            456899999987543  58899999877642  223344567766555542   23344699999864

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.35  E-value=0.0085  Score=40.07  Aligned_cols=69  Identities=20%  Similarity=0.482  Sum_probs=41.9

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eeccCC---------ccEEEe---cCCcEEEEEeec
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAEIG---------SHRILL---PAGSLFFLSLVH  195 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~~~---------~~~~~~---~~~~l~~~~vi~  195 (238)
                      +....+++|+++.|.|.+.|...  -.+.|++.  |+.      |.....         ++....   ...++.+.  |.
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~--~~   84 (127)
T d1n0xh1           7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYME--LR   84 (127)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEE--EC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEE--EE
Confidence            44567889999999999988654  35788862  211      111111         111111   11223332  67


Q ss_pred             CCCCCCCeEEEEE
Q psy18191        196 GKKDTDSGVYWCV  208 (238)
Q Consensus       196 ~v~~~d~G~Y~C~  208 (238)
                      .++.+|++.|.|-
T Consensus        85 ~L~~eDtAvYYCA   97 (127)
T d1n0xh1          85 SLRSADTAVYYCA   97 (127)
T ss_dssp             SCCGGGCEEEEEE
T ss_pred             ccCCCCceEEEEE
Confidence            7899999999995

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.35  E-value=0.015  Score=38.31  Aligned_cols=72  Identities=18%  Similarity=0.362  Sum_probs=41.9

Q ss_pred             CceEEeCCCcEEEEEEEeeeCCC--EEEEEeC--CE------EeeccC---------CccEEEe-cCCcEEEEEeecCCC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEP--RIEWYKD--GS------LVSAEI---------GSHRILL-PAGSLFFLSLVHGKK  198 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~--g~------~l~~~~---------~~~~~~~-~~~~l~~~~vi~~v~  198 (238)
                      -...+++|+++.|.|++.|....  .+.|++.  |+      .|....         .++.... +.....+..-|..++
T Consensus         8 G~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~   87 (117)
T d1jnhb1           8 GAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLT   87 (117)
T ss_dssp             CCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccC
Confidence            34566889999999999986543  5789872  21      111110         1121111 111111122267889


Q ss_pred             CCCCeEEEEEEE
Q psy18191        199 DTDSGVYWCVAR  210 (238)
Q Consensus       199 ~~d~G~Y~C~a~  210 (238)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (117)
T d1jnhb1          88 SEDSAVYSCSRG   99 (117)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeec
Confidence            999999999543

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.35  E-value=0.0096  Score=39.76  Aligned_cols=70  Identities=20%  Similarity=0.418  Sum_probs=42.5

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCCC--EEEEEeC--CEE------eeccC---------CccEEE-ec--CCcEEEEEeec
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPEP--RIEWYKD--GSL------VSAEI---------GSHRIL-LP--AGSLFFLSLVH  195 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~--g~~------l~~~~---------~~~~~~-~~--~~~l~~~~vi~  195 (238)
                      +....+++|+++.|.|++.|...-  .+.|++.  |+.      |....         .++... .+  ...+.+.  |.
T Consensus         6 sG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~--m~   83 (126)
T d1lmka1           6 SGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQ--LS   83 (126)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE--EC
T ss_pred             ECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEee--ec
Confidence            345677899999999999887553  4778762  211      11110         111111 11  2223222  68


Q ss_pred             CCCCCCCeEEEEEE
Q psy18191        196 GKKDTDSGVYWCVA  209 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a  209 (238)
                      .++.+|++.|.|-.
T Consensus        84 ~L~~eDTAvYYCAr   97 (126)
T d1lmka1          84 SLTSEDSAVYYCAR   97 (126)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEee
Confidence            88999999999964

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.34  E-value=0.0061  Score=40.01  Aligned_cols=70  Identities=14%  Similarity=0.329  Sum_probs=41.1

Q ss_pred             ceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eeccCC---------ccEEEe-cCCcEEEEEeecCCCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAEIG---------SHRILL-PAGSLFFLSLVHGKKD  199 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~~~---------~~~~~~-~~~~l~~~~vi~~v~~  199 (238)
                      ...+++|+++.|.|.+.|...  -.+.|++.  |+.      +.....         ++.... ......+.+-|..++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~   88 (114)
T d1indh1           9 GDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRS   88 (114)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeecc
Confidence            456789999999999988654  45788863  211      111101         111111 1212112223788899


Q ss_pred             CCCeEEEEEE
Q psy18191        200 TDSGVYWCVA  209 (238)
Q Consensus       200 ~d~G~Y~C~a  209 (238)
                      +|++.|.|-.
T Consensus        89 eDtAvYYCA~   98 (114)
T d1indh1          89 EDTALYFCAS   98 (114)
T ss_dssp             GGCEEEEEEC
T ss_pred             CcccEEEECC
Confidence            9999999953

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.0072  Score=39.99  Aligned_cols=69  Identities=12%  Similarity=0.080  Sum_probs=37.7

Q ss_pred             EEeCCCcEEEEEEEeeeCCC--E-EEEEeC--CE--Eee--cc---------CCccEEEe--cCCcEEEEEeecCCCCCC
Q psy18191        142 VVPRHEPTTLNCKADGYPEP--R-IEWYKD--GS--LVS--AE---------IGSHRILL--PAGSLFFLSLVHGKKDTD  201 (238)
Q Consensus       142 ~~~~G~~~~L~C~~~g~P~p--~-i~W~~~--g~--~l~--~~---------~~~~~~~~--~~~~l~~~~vi~~v~~~d  201 (238)
                      .+.+|+.++|.|...+....  . +.|++.  +.  .+.  .+         ....+...  .+....  +.|..++.+|
T Consensus        11 ~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--L~I~~l~~~D   88 (118)
T d1yjdc1          11 LVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVT--FYLQNLYVNQ   88 (118)
T ss_dssp             EECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEE--EEEESCCGGG
T ss_pred             EEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEE--EEECCCCccc
Confidence            45679999999998654332  2 345542  11  111  00         01112221  222222  2377889999


Q ss_pred             CeEEEEEEEeC
Q psy18191        202 SGVYWCVARNE  212 (238)
Q Consensus       202 ~G~Y~C~a~N~  212 (238)
                      +|.|.|.+...
T Consensus        89 savYyCa~~~~   99 (118)
T d1yjdc1          89 TDIYFCKIEVM   99 (118)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CeEEEEEEecc
Confidence            99999976643

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.33  E-value=0.015  Score=38.84  Aligned_cols=74  Identities=20%  Similarity=0.393  Sum_probs=42.7

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eeccC---------CccEEE-ecCCcEEEEEeecCC
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAEI---------GSHRIL-LPAGSLFFLSLVHGK  197 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~~---------~~~~~~-~~~~~l~~~~vi~~v  197 (238)
                      +....+++|+++.|.|++.|...  -.+.|++.  |+.      |....         .++... .+.....+..-|..+
T Consensus         7 sg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL   86 (125)
T d1rihh1           7 SGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSL   86 (125)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeecc
Confidence            34566789999999999987654  35788762  211      11110         111111 121111122226788


Q ss_pred             CCCCCeEEEEEEEe
Q psy18191        198 KDTDSGVYWCVARN  211 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N  211 (238)
                      +.+|++.|.|-...
T Consensus        87 ~~eDtAvYYCAR~~  100 (125)
T d1rihh1          87 TSEDSAVYYCARES  100 (125)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CcccceEEEEeeeC
Confidence            99999999996543

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.31  E-value=0.02  Score=37.78  Aligned_cols=70  Identities=20%  Similarity=0.442  Sum_probs=42.2

Q ss_pred             CceEEeCCCcEEEEEEEeeeCCC--EEEEEeC--CEE------eeccC---------CccEEEe-c--CCcEEEEEeecC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEP--RIEWYKD--GSL------VSAEI---------GSHRILL-P--AGSLFFLSLVHG  196 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~--g~~------l~~~~---------~~~~~~~-~--~~~l~~~~vi~~  196 (238)
                      -...+++|+++.|.|.+.|....  .+.|++.  |+.      |....         .++.... +  ...+.+.  |..
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLq--m~s   85 (119)
T d1rz7h1           8 GAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLE--LSS   85 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEE--ECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEee--eec
Confidence            34567889999999999886543  5888863  211      11110         1121111 1  2223222  678


Q ss_pred             CCCCCCeEEEEEEE
Q psy18191        197 KKDTDSGVYWCVAR  210 (238)
Q Consensus       197 v~~~d~G~Y~C~a~  210 (238)
                      ++.+|++.|.|-+.
T Consensus        86 L~~eDTAvYYCAr~   99 (119)
T d1rz7h1          86 LRSEDTAVYYCAAD   99 (119)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cCcccceEEEEeec
Confidence            89999999999553

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.30  E-value=0.00089  Score=43.11  Aligned_cols=43  Identities=12%  Similarity=0.130  Sum_probs=30.9

Q ss_pred             CCCccEEEeccccccccce-----------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQG-----------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g-----------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.|.+.|++++..+....           ...|.+.++..+|+|.|+|.+.|.
T Consensus        32 ~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   85 (100)
T d1qz1a3          32 FPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENK   85 (100)
T ss_dssp             ESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEET
T ss_pred             ecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEEC
Confidence            5678899999987553321           135777888888888888877664

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.28  E-value=0.00098  Score=42.18  Aligned_cols=44  Identities=9%  Similarity=-0.116  Sum_probs=31.3

Q ss_pred             CCCccEEEecccccccc---ceEEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSK---QGLMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~---~g~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .|.|.+.|++++.....   ..-..|.+.++..+|+|.|+|.+.|..
T Consensus        32 ~P~p~i~W~k~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   78 (91)
T d1cs6a3          32 NPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIK   78 (91)
T ss_dssp             ESCCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETT
T ss_pred             ccCCEEEEEecccccceEeeeeeeEEEeCCCCccCCEEEEEEEEECC
Confidence            56788999996653221   112357888999999999998887743

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0013  Score=42.65  Aligned_cols=44  Identities=9%  Similarity=-0.059  Sum_probs=31.7

Q ss_pred             cCCCccEEEecccccccc--c---eE----EEEEcCCCCCCCCCceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLPQSK--Q---GL----MYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~--~---g~----~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..+.+++.||+++.....  .   .+    ..|.+..+...|+|.|+|.+.|.
T Consensus        29 ~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   81 (101)
T d1iray1          29 NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNS   81 (101)
T ss_dssp             GGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEET
T ss_pred             CCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECC
Confidence            356889999998863321  1   11    25778899999999999887664

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.25  E-value=0.016  Score=38.28  Aligned_cols=71  Identities=17%  Similarity=0.414  Sum_probs=42.2

Q ss_pred             CceEEeCCCcEEEEEEEeeeCCC---EEEEEeC--CEEe------eccC--------CccEEEe-c--CCcEEEEEeecC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEP---RIEWYKD--GSLV------SAEI--------GSHRILL-P--AGSLFFLSLVHG  196 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p---~i~W~~~--g~~l------~~~~--------~~~~~~~-~--~~~l~~~~vi~~  196 (238)
                      -...+++|+++.|.|++.|....   .+.|++.  |+.+      ....        .++.... +  ...+.+  -|..
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L--~~~s   85 (119)
T d1ncwh1           8 GPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFL--QLNS   85 (119)
T ss_dssp             SCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEE--EECS
T ss_pred             CCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeec--cccc
Confidence            34567899999999999987663   3678762  3221      1110        1111111 1  122222  2678


Q ss_pred             CCCCCCeEEEEEEEe
Q psy18191        197 KKDTDSGVYWCVARN  211 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N  211 (238)
                      ++.+|++.|.|-..-
T Consensus        86 L~~eDTAvYYCAr~~  100 (119)
T d1ncwh1          86 VTTEDTATYYCAGLL  100 (119)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cccCCceEEEEeEec
Confidence            899999999996443

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.24  E-value=0.022  Score=38.02  Aligned_cols=71  Identities=15%  Similarity=0.401  Sum_probs=42.6

Q ss_pred             CceEEeCCCcEEEEEEEeeeCCC--EEEEEeC--CE---E---eecc---------CCccEEEe-c--CCcEEEEEeecC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEP--RIEWYKD--GS---L---VSAE---------IGSHRILL-P--AGSLFFLSLVHG  196 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~--g~---~---l~~~---------~~~~~~~~-~--~~~l~~~~vi~~  196 (238)
                      -...+++|+++.|.|.+.|...-  .+.|++.  |+   .   |...         ..++..+. +  ..++.+.  |..
T Consensus         8 G~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~--~~s   85 (128)
T d2nxyd1           8 GAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLE--LRN   85 (128)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEE--ECS
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEee--eee
Confidence            34567899999999999886654  4678752  11   1   1111         01122111 1  2233322  678


Q ss_pred             CCCCCCeEEEEEEEe
Q psy18191        197 KKDTDSGVYWCVARN  211 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N  211 (238)
                      ++.+|++.|.|-...
T Consensus        86 L~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          86 LRSDDTAVYFCAGVY  100 (128)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             ccccCceEEEEeEEe
Confidence            899999999997654

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.24  E-value=0.0097  Score=39.27  Aligned_cols=69  Identities=19%  Similarity=0.453  Sum_probs=41.5

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eeccCC---------ccEEEe-c--CCcEEEEEeec
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAEIG---------SHRILL-P--AGSLFFLSLVH  195 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~~~---------~~~~~~-~--~~~l~~~~vi~  195 (238)
                      +....+++|+++.|.|++.|...  -.+.|++.  |+.      +.....         ++.... +  ...+.+  .|.
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L--~~~   84 (118)
T d2jelh1           7 SGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYM--ELA   84 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEE--EEC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEee--ccc
Confidence            34566789999999999988664  35888863  211      111101         111111 1  122222  267


Q ss_pred             CCCCCCCeEEEEE
Q psy18191        196 GKKDTDSGVYWCV  208 (238)
Q Consensus       196 ~v~~~d~G~Y~C~  208 (238)
                      .++.+|++.|.|-
T Consensus        85 sL~~eDTAvYYCA   97 (118)
T d2jelh1          85 RLTSEDSAIYYCA   97 (118)
T ss_dssp             SCCGGGCEEEEEE
T ss_pred             ccccCcceeeeEE
Confidence            8899999999994

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.18  E-value=0.023  Score=38.05  Aligned_cols=74  Identities=15%  Similarity=0.263  Sum_probs=43.4

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eeccC---------CccEEE-ecCCcEEEEEeecCC
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAEI---------GSHRIL-LPAGSLFFLSLVHGK  197 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~~---------~~~~~~-~~~~~l~~~~vi~~v  197 (238)
                      +....+++|+++.|.|.+.|...  -.+.|++.  |+.      |....         .++... .++....+.+-|..+
T Consensus         6 sg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L   85 (130)
T d1rhhb1           6 SGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNL   85 (130)
T ss_dssp             CCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeecc
Confidence            34566789999999999987654  35888863  221      11110         112111 112121222226788


Q ss_pred             CCCCCeEEEEEEEe
Q psy18191        198 KDTDSGVYWCVARN  211 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N  211 (238)
                      +.+|++.|.|-...
T Consensus        86 ~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          86 RSDDTAVYYCARDF   99 (130)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCCCcEEEEEEeec
Confidence            99999999997653

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.18  E-value=0.013  Score=39.11  Aligned_cols=70  Identities=19%  Similarity=0.432  Sum_probs=42.2

Q ss_pred             ceEEeCCCcEEEEEEEeeeCCC--EEEEEeC--CE------EeeccCC---------ccEEEe-c--CCcEEEEEeecCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPEP--RIEWYKD--GS------LVSAEIG---------SHRILL-P--AGSLFFLSLVHGK  197 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~--g~------~l~~~~~---------~~~~~~-~--~~~l~~~~vi~~v  197 (238)
                      ...+++|+++.|.|.+.|....  .+.|++.  |+      .|..+..         ++.... +  ...+.+  -|..+
T Consensus         8 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yL--q~~sL   85 (124)
T d1zvya1           8 GGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYL--RMDSV   85 (124)
T ss_dssp             CEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEE--EECSC
T ss_pred             CceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeec--eeccc
Confidence            3456789999999999886644  5889873  21      1111111         111111 1  122222  26788


Q ss_pred             CCCCCeEEEEEEEe
Q psy18191        198 KDTDSGVYWCVARN  211 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N  211 (238)
                      +.+|++.|.|-+..
T Consensus        86 ~~eDtAvYYCAr~~   99 (124)
T d1zvya1          86 KSEDTAIYTCGATR   99 (124)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             cCCcceEEEEeecc
Confidence            99999999997643

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0024  Score=40.25  Aligned_cols=43  Identities=9%  Similarity=-0.216  Sum_probs=32.7

Q ss_pred             CCCccEEEecccccccc----ceEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSK----QGLMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~----~g~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.+.+.|++.+.+...    .+..-|.+.++..+|+|.|+|.+.+.
T Consensus        31 ~p~p~v~W~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~   77 (90)
T d1gsma1          31 DRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCG   77 (90)
T ss_dssp             STTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCccEEEEEEeeeeeeeeeccCceeeEEcCccChhhCCcEEEEEEeC
Confidence            56788999997765432    12356889999999999999887763

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.17  E-value=0.0063  Score=40.41  Aligned_cols=28  Identities=36%  Similarity=0.674  Sum_probs=21.7

Q ss_pred             ceEEeCCCcEEEEEEEeeeCC--CEEEEEe
Q psy18191        140 SAVVPRHEPTTLNCKADGYPE--PRIEWYK  167 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~--p~i~W~~  167 (238)
                      ...+++|+++.|.|.+.|...  -.+.|++
T Consensus         9 ~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyR   38 (119)
T d1qnzh_           9 AELVKPGASVKMSCKASGYTFTTYPIEWMK   38 (119)
T ss_dssp             CCEECTTEEEEEEEEEETCCSSSSCEEEEE
T ss_pred             CceECCCCCEEEEEEEeccCCCCCCcceee
Confidence            346788999999999887543  3588986

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.16  E-value=0.0008  Score=42.73  Aligned_cols=42  Identities=7%  Similarity=-0.097  Sum_probs=30.6

Q ss_pred             CCCccEEEeccccccccce---E-----EEEEcCCCCCCCCCceEEEeCC
Q psy18191         61 YPKPICLRFQDLLPQSKQG---L-----MYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g---~-----~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      .|.|.+.|++++.++....   +     ..|.+.++...|+|.|+|.+.+
T Consensus        28 ~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   77 (92)
T d1epfa2          28 SLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRI   77 (92)
T ss_dssp             SSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEE
T ss_pred             cCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEE
Confidence            5678899999987443321   1     2577888999999999987655

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.15  E-value=0.023  Score=37.77  Aligned_cols=71  Identities=17%  Similarity=0.339  Sum_probs=42.3

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eeccC---------CccE-EEec--CCcEEEEEeec
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAEI---------GSHR-ILLP--AGSLFFLSLVH  195 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~~---------~~~~-~~~~--~~~l~~~~vi~  195 (238)
                      +....+++|+++.|.|++.|...  -.+.|++.  |+.      +....         .++. +..+  ...+.+.  |.
T Consensus         7 sg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~--~~   84 (124)
T d2b1hh1           7 SGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQ--WS   84 (124)
T ss_dssp             CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEE--ES
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEe--ee
Confidence            34567789999999999988654  34788872  211      11110         1111 1111  1223322  67


Q ss_pred             CCCCCCCeEEEEEEE
Q psy18191        196 GKKDTDSGVYWCVAR  210 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~  210 (238)
                      .++.+|++.|.|-..
T Consensus        85 ~L~~eDTA~YYCAR~   99 (124)
T d2b1hh1          85 SLKPSDTALYYCARL   99 (124)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccccccceEEEEeec
Confidence            889999999999543

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.14  E-value=0.028  Score=37.20  Aligned_cols=71  Identities=21%  Similarity=0.443  Sum_probs=42.9

Q ss_pred             CCceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eeccC---------CccEEE-ec--CCcEEEEEeec
Q psy18191        138 PASAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAEI---------GSHRIL-LP--AGSLFFLSLVH  195 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~~---------~~~~~~-~~--~~~l~~~~vi~  195 (238)
                      +....+++|+++.|.|.+.|...  -.+.|++.  |+.      |....         .++... .+  ...+.+  -|.
T Consensus         8 sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL--~~~   85 (122)
T d1vgeh1           8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYM--GLS   85 (122)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEE--EEC
T ss_pred             cCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeee--ccc
Confidence            34567899999999999988654  45888873  211      11110         111111 11  222222  267


Q ss_pred             CCCCCCCeEEEEEEE
Q psy18191        196 GKKDTDSGVYWCVAR  210 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~  210 (238)
                      .++.+|++.|.|-..
T Consensus        86 ~L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          86 SLRPEDTAVYYCARD  100 (122)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeec
Confidence            889999999999654

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0022  Score=41.34  Aligned_cols=44  Identities=16%  Similarity=0.002  Sum_probs=30.3

Q ss_pred             cCCCccEEEeccccccccce----------------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLPQSKQG----------------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~g----------------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..|.+.+.|++++..+....                ...|.+.++..+|+|.|+|.+.|.
T Consensus        29 g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~   88 (104)
T d1nbqa2          29 GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNG   88 (104)
T ss_dssp             CBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECS
T ss_pred             CCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEEC
Confidence            35678999999887543211                124567778888888888777763

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.12  E-value=0.029  Score=37.16  Aligned_cols=70  Identities=17%  Similarity=0.419  Sum_probs=42.1

Q ss_pred             CceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEEe------eccCC---------ccEEEe---cCCcEEEEEeecC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSLV------SAEIG---------SHRILL---PAGSLFFLSLVHG  196 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~l------~~~~~---------~~~~~~---~~~~l~~~~vi~~  196 (238)
                      ....+++|+++.|.|.+.|...  ..+.|++.  |+.+      .....         ++....   ...++.  +.|..
T Consensus         8 g~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~--L~i~~   85 (121)
T d1j05b_           8 GAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAY--LQLTS   85 (121)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEE--EEECS
T ss_pred             CCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceee--ecccc
Confidence            4566889999999999987543  46889863  2211      11100         111111   112222  23788


Q ss_pred             CCCCCCeEEEEEEE
Q psy18191        197 KKDTDSGVYWCVAR  210 (238)
Q Consensus       197 v~~~d~G~Y~C~a~  210 (238)
                      ++.+|++.|.|-..
T Consensus        86 L~~eDtAvYYCAr~   99 (121)
T d1j05b_          86 LTSEDTAVYYCAPF   99 (121)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCcCcceEEEeEee
Confidence            89999999999654

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.11  E-value=0.015  Score=39.22  Aligned_cols=71  Identities=17%  Similarity=0.384  Sum_probs=41.3

Q ss_pred             ceEEeCCCcEEEEEEEeeeCC----CEEEEEeC--CEE---e---eccC--------CccE-EEecCCcEEEEEeecCCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPE----PRIEWYKD--GSL---V---SAEI--------GSHR-ILLPAGSLFFLSLVHGKK  198 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~----p~i~W~~~--g~~---l---~~~~--------~~~~-~~~~~~~l~~~~vi~~v~  198 (238)
                      ...+.+|+++.|.|.+.|...    ..+.|++.  |+.   +   ....        .++. +..++....+.+.|..++
T Consensus         9 ~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~   88 (132)
T d1tjgh1           9 PPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVS   88 (132)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCC
Confidence            356788999999999987542    35889863  111   1   1000        1111 111121112222378889


Q ss_pred             CCCCeEEEEEEE
Q psy18191        199 DTDSGVYWCVAR  210 (238)
Q Consensus       199 ~~d~G~Y~C~a~  210 (238)
                      .+|++.|.|-..
T Consensus        89 ~eDtAvYYCAr~  100 (132)
T d1tjgh1          89 PVDTATYFCAHR  100 (132)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEEEEEe
Confidence            999999999654

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0019  Score=41.76  Aligned_cols=41  Identities=10%  Similarity=0.025  Sum_probs=30.1

Q ss_pred             CccEEEecccccccc--c------------eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         63 KPICLRFQDLLPQSK--Q------------GLMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        63 ~~~~~w~~~~~~~~~--~------------g~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.+.|+|++.....  .            +...|.+.++..+|+|.|+|.+.+.
T Consensus        33 ~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~   87 (104)
T d2aw2a1          33 RPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ   87 (104)
T ss_dssp             CCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcC
Confidence            578999998753311  0            1346888899999999999888774

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.10  E-value=0.042  Score=36.58  Aligned_cols=72  Identities=18%  Similarity=0.385  Sum_probs=42.9

Q ss_pred             CceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eeccC---------CccEEEe-c--CCcEEEEEeecC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAEI---------GSHRILL-P--AGSLFFLSLVHG  196 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~~---------~~~~~~~-~--~~~l~~~~vi~~  196 (238)
                      -...+++|+++.|.|.+.|...  -.+.|.+.  |+.      +....         .++.... +  ..++.+  -|..
T Consensus         8 g~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL--~~~s   85 (127)
T d2fx7h1           8 GAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYL--ELNS   85 (127)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEE--EECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEee--eecc
Confidence            3456788999999999988654  34788862  211      11110         1111111 1  122322  2678


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy18191        197 KKDTDSGVYWCVARNE  212 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N~  212 (238)
                      ++.+|++.|.|.....
T Consensus        86 L~~eDTavYYCAR~~~  101 (127)
T d2fx7h1          86 LRPEDTAVYYCAREGT  101 (127)
T ss_dssp             CCGGGCEEEEEEEEEE
T ss_pred             cCcccceEEEEeeccc
Confidence            8999999999976543

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.09  E-value=0.019  Score=38.64  Aligned_cols=69  Identities=17%  Similarity=0.426  Sum_probs=41.7

Q ss_pred             ceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eeccC---------CccEEEec---CCcEEEEEeecCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAEI---------GSHRILLP---AGSLFFLSLVHGK  197 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~~---------~~~~~~~~---~~~l~~~~vi~~v  197 (238)
                      ...+++|+++.|.|++.|...  -.+.|++.  |+.      |....         .++.....   ...+.+.  |..+
T Consensus         9 ~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~--i~~L   86 (135)
T d1ieha_           9 GGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQ--MNSL   86 (135)
T ss_dssp             CCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEE--EESC
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEec--Eeee
Confidence            456789999999999988654  34888863  211      11110         11221211   1223222  6777


Q ss_pred             CCCCCeEEEEEEE
Q psy18191        198 KDTDSGVYWCVAR  210 (238)
Q Consensus       198 ~~~d~G~Y~C~a~  210 (238)
                      +.+|++.|.|-..
T Consensus        87 ~~eDTAvYYCAr~   99 (135)
T d1ieha_          87 KSEDTAVYYCAKY   99 (135)
T ss_dssp             CSSSCEEEEEEEB
T ss_pred             CcccceeeEEEEe
Confidence            9999999999655

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0015  Score=40.63  Aligned_cols=43  Identities=12%  Similarity=-0.103  Sum_probs=32.7

Q ss_pred             cCCCccEEEeccccccccceEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~g~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..|.|.+.|++++......+ ..+.+.++..+|+|.|+|.+.|.
T Consensus        25 g~p~P~i~W~~~~~~~~~~~-~~l~i~~v~~~DsG~Y~C~a~N~   67 (84)
T d2nxyb2          25 PGSSPSVQCRSPRGKNIQGG-KTLSVSQLELQDSGTWTCTVLQN   67 (84)
T ss_dssp             TTCCCEEEEECTTCCEEEES-SEEEESSCCGGGCEEEEEEEEET
T ss_pred             cCCchheEEEeecccceeee-eeeeeeecccccccEEEEEEEeC
Confidence            36789999999877443322 24678899999999999888774

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0024  Score=41.90  Aligned_cols=41  Identities=10%  Similarity=0.054  Sum_probs=29.7

Q ss_pred             CccEEEeccccc-cc-----------------cceEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         63 KPICLRFQDLLP-QS-----------------KQGLMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        63 ~~~~~w~~~~~~-~~-----------------~~g~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.+.||+++.. ..                 ..+..+|.+.++...|+|.|+|.+.|.
T Consensus        32 ~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   90 (113)
T d2dava1          32 KPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYK   90 (113)
T ss_dssp             CCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECS
T ss_pred             CCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEEEeC
Confidence            578999997531 10                 011356889999999999999888774

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.08  E-value=0.0055  Score=39.81  Aligned_cols=67  Identities=19%  Similarity=0.400  Sum_probs=37.1

Q ss_pred             EeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eecc-------C-CccEEEe-cCCcEEEEEeecCCCCCCCe
Q psy18191        143 VPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAE-------I-GSHRILL-PAGSLFFLSLVHGKKDTDSG  203 (238)
Q Consensus       143 ~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~-------~-~~~~~~~-~~~~l~~~~vi~~v~~~d~G  203 (238)
                      +++|+++.|.|.+.|...  -.+.|++.  |+.      +...       . .++.... +.....+.+-|..++.+|++
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDtA   84 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTA   84 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCS
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccce
Confidence            578999999999977533  44788863  111      1111       0 1111111 11111222227888999999


Q ss_pred             EEEEEE
Q psy18191        204 VYWCVA  209 (238)
Q Consensus       204 ~Y~C~a  209 (238)
                      .|.|-.
T Consensus        85 vYyCA~   90 (107)
T d1sjva_          85 VYYCYT   90 (107)
T ss_dssp             EEEEEE
T ss_pred             eeeEec
Confidence            999954

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.06  E-value=0.0013  Score=42.75  Aligned_cols=43  Identities=14%  Similarity=0.123  Sum_probs=30.2

Q ss_pred             cCCCccEEEecccccccc--ce-E------EEEEcCCCCCCCCCceEEEeCC
Q psy18191         60 FYPKPICLRFQDLLPQSK--QG-L------MYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~--~g-~------~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      ..|.+.+.|++++.++..  .. .      ..|.+.++.++|+|.|+|.+.|
T Consensus        31 ~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   82 (105)
T d1cs6a2          31 HYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATS   82 (105)
T ss_dssp             EESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEE
Confidence            356789999999874322  11 1      2467788888899999987665

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.06  E-value=0.031  Score=37.22  Aligned_cols=73  Identities=16%  Similarity=0.359  Sum_probs=42.6

Q ss_pred             ceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eeccCC---------ccEEEe-cCCcEEEEEeecCCCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAEIG---------SHRILL-PAGSLFFLSLVHGKKD  199 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~~~---------~~~~~~-~~~~l~~~~vi~~v~~  199 (238)
                      ...+++|+++.|.|.+.|...  -.+.|++.  |+.      |..+..         ++.... ++....+.+-|..++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~   88 (126)
T d1dfbh1           9 GGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRA   88 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeecc
Confidence            456788999999999988654  35888873  211      111111         111111 1111111222678899


Q ss_pred             CCCeEEEEEEEeC
Q psy18191        200 TDSGVYWCVARNE  212 (238)
Q Consensus       200 ~d~G~Y~C~a~N~  212 (238)
                      +|++.|.|.....
T Consensus        89 eDtavYYCAr~~~  101 (126)
T d1dfbh1          89 EDMALYYCVKGRD  101 (126)
T ss_dssp             GGCEEEEEEEEEC
T ss_pred             CcceEEEEEeccC
Confidence            9999999976543

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=96.06  E-value=0.023  Score=37.39  Aligned_cols=70  Identities=20%  Similarity=0.479  Sum_probs=41.9

Q ss_pred             CceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eeccC---------CccE-EEe--cCCcEEEEEeecC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAEI---------GSHR-ILL--PAGSLFFLSLVHG  196 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~~---------~~~~-~~~--~~~~l~~~~vi~~  196 (238)
                      ....+++|+++.|.|++.|...  -.+.|++.  |+.      |....         .++. +..  +..++.+.  |..
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~--i~~   85 (118)
T d1ct8b1           8 GAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQ--FSS   85 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEE--ECS
T ss_pred             CCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEec--ccc
Confidence            4567789999999999988653  45788762  221      11110         0111 111  12223322  678


Q ss_pred             CCCCCCeEEEEEEE
Q psy18191        197 KKDTDSGVYWCVAR  210 (238)
Q Consensus       197 v~~~d~G~Y~C~a~  210 (238)
                      ++.+|++.|.|-..
T Consensus        86 L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          86 LTTEDSAIYYCARY   99 (118)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEeee
Confidence            89999999999543

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.04  E-value=0.015  Score=38.67  Aligned_cols=70  Identities=24%  Similarity=0.454  Sum_probs=42.0

Q ss_pred             CceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eeccC---------CccEEE-ec--CCcEEEEEeecC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAEI---------GSHRIL-LP--AGSLFFLSLVHG  196 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~~---------~~~~~~-~~--~~~l~~~~vi~~  196 (238)
                      ....+++|+++.|.|.+.|...  -.+.|.+.  |+.      |....         .++... .+  ..++.+.  |..
T Consensus         8 G~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~--~~s   85 (124)
T d1yedb1           8 GPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQ--LSS   85 (124)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEE--EES
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEec--ccc
Confidence            4566789999999999988654  35888862  111      11110         011111 11  2233222  677


Q ss_pred             CCCCCCeEEEEEEE
Q psy18191        197 KKDTDSGVYWCVAR  210 (238)
Q Consensus       197 v~~~d~G~Y~C~a~  210 (238)
                      ++.+|++.|.|-..
T Consensus        86 L~~eDTAvYYCAR~   99 (124)
T d1yedb1          86 LKSEDSAVYFCTRW   99 (124)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cCCCcceEEEeccc
Confidence            89999999999643

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.03  E-value=0.017  Score=37.12  Aligned_cols=70  Identities=14%  Similarity=0.279  Sum_probs=41.4

Q ss_pred             CCCcEEEEEEEeee-CCC--EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCC---CCeEEEEEEEeCCCce
Q psy18191        145 RHEPTTLNCKADGY-PEP--RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDT---DSGVYWCVARNELGFA  216 (238)
Q Consensus       145 ~G~~~~L~C~~~g~-P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~---d~G~Y~C~a~N~~G~~  216 (238)
                      .++.+.|.|.+.|. |..  .++|.+++..+..... ......+|+......+.- ..+   ....|+|.+.......
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~-~~~~~~~gtys~~S~L~v-~~~~W~~~~~ytC~V~H~s~~~   93 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNF-PPALASGGRYTMSNQLTL-PAVECPEGESVKCSVQHDSNPV   93 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEEC-CCEECSSSCEEEEEEEEE-CGGGSCTTCEEEEEEEETTSCC
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEe-eeEecCCCCEEEEEEEEE-eHHHccCCCEEEEEEEECCCCC
Confidence            46789999999995 543  4778888765543211 112334555544333221 222   2447999998765544

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.03  E-value=0.039  Score=36.84  Aligned_cols=70  Identities=16%  Similarity=0.299  Sum_probs=39.8

Q ss_pred             eEEeCCCcEEEEEEEeeeCC----CEEEEEeC--CEEe------eccC--------CccEE-EecCCcEEEEEeecCCCC
Q psy18191        141 AVVPRHEPTTLNCKADGYPE----PRIEWYKD--GSLV------SAEI--------GSHRI-LLPAGSLFFLSLVHGKKD  199 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~~g~P~----p~i~W~~~--g~~l------~~~~--------~~~~~-~~~~~~l~~~~vi~~v~~  199 (238)
                      ..+++|+++.|.|.+.|...    ..+.|++.  |+.+      ..+.        .++.. ........+.+.|..++.
T Consensus        10 ~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~   89 (126)
T d1etzb1          10 GILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDT   89 (126)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccc
Confidence            46778999999999887532    24668752  1111      1110        11111 122222122223788899


Q ss_pred             CCCeEEEEEEE
Q psy18191        200 TDSGVYWCVAR  210 (238)
Q Consensus       200 ~d~G~Y~C~a~  210 (238)
                      +|++.|.|-..
T Consensus        90 eDtAvYyCAr~  100 (126)
T d1etzb1          90 SDTATYHCARR  100 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cccceEEEEEe
Confidence            99999999643

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.00  E-value=0.052  Score=35.88  Aligned_cols=70  Identities=19%  Similarity=0.452  Sum_probs=41.9

Q ss_pred             ceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eeccCC---------ccEEEe---cCCcEEEEEeecCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAEIG---------SHRILL---PAGSLFFLSLVHGK  197 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~~~---------~~~~~~---~~~~l~~~~vi~~v  197 (238)
                      ...+++|+++.|.|.+.|...  -.+.|++.  |+.      |.....         ++....   ....+.+  -|..+
T Consensus         9 ~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L--~i~~L   86 (123)
T d1mqkh_           9 GDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYL--QMSSL   86 (123)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEE--EECSC
T ss_pred             CceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCccccccc--ceeee
Confidence            456789999999999988654  34788863  211      111110         111111   1222222  26788


Q ss_pred             CCCCCeEEEEEEEe
Q psy18191        198 KDTDSGVYWCVARN  211 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N  211 (238)
                      +.+|++.|.|-...
T Consensus        87 ~~eDtAvYYCAr~~  100 (123)
T d1mqkh_          87 KSEDTAMYYCVRHE  100 (123)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccCcccceeEEecC
Confidence            99999999996554

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.00  E-value=0.013  Score=38.99  Aligned_cols=71  Identities=15%  Similarity=0.375  Sum_probs=40.3

Q ss_pred             ceEEeCCCcEEEEEEEeeeCC----CEEEEEeC--CEEe------eccCC-------ccEEEe--cCCcEEEEEeecCCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPE----PRIEWYKD--GSLV------SAEIG-------SHRILL--PAGSLFFLSLVHGKK  198 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~----p~i~W~~~--g~~l------~~~~~-------~~~~~~--~~~~l~~~~vi~~v~  198 (238)
                      ...+++|++++|.|.+.|...    ..+.|++.  |+.+      .....       ..++.+  +.....+.+.|..++
T Consensus         9 ~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~   88 (123)
T d1r0ah1           9 PGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVE   88 (123)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecc
Confidence            456788999999999987542    24679862  2111      11110       011111  111111222377889


Q ss_pred             CCCCeEEEEEEE
Q psy18191        199 DTDSGVYWCVAR  210 (238)
Q Consensus       199 ~~d~G~Y~C~a~  210 (238)
                      .+|++.|.|-..
T Consensus        89 ~eDsAvYyCAr~  100 (123)
T d1r0ah1          89 TADTAIYYCAQS  100 (123)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEeeccc
Confidence            999999999644

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0076  Score=39.02  Aligned_cols=71  Identities=20%  Similarity=0.274  Sum_probs=44.6

Q ss_pred             EeCCCcEEEEEEEeee-CC---CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCC--Ce-EEEEEEEeCCC
Q psy18191        143 VPRHEPTTLNCKADGY-PE---PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTD--SG-VYWCVARNELG  214 (238)
Q Consensus       143 ~~~G~~~~L~C~~~g~-P~---p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d--~G-~Y~C~a~N~~G  214 (238)
                      ...++.+.|.|.+.|. |.   -.+.|.+++..+............+|+..+...+. +..+|  .| .|+|.+.....
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~-v~~~~W~~g~~ytC~V~H~~l   92 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLT-VLHQDWLNGKEYKCKVSNKAL   92 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEE-CCHHHHHTTCCEEEEEECTTS
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEE-EcHHHcCCCCEEEEEEEeCCC
Confidence            4567889999999886 43   36789999987764311222234566665544433 24432  34 79999997653

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0039  Score=39.06  Aligned_cols=44  Identities=7%  Similarity=-0.119  Sum_probs=33.0

Q ss_pred             cCCCccEEEeccccccccc------eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLPQSKQ------GLMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~------g~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..|.|.+.|++++......      ....|.+.++..+|+|.|+|.+.+.
T Consensus        27 g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~   76 (90)
T d1vcaa2          27 GCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCE   76 (90)
T ss_dssp             SCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEET
T ss_pred             CCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeC
Confidence            3567889999876633221      1357889999999999999888774

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.98  E-value=0.0022  Score=41.79  Aligned_cols=43  Identities=9%  Similarity=-0.025  Sum_probs=30.0

Q ss_pred             CCCccEEEeccccccccce-----------------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQG-----------------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g-----------------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.+.+.|++++..+....                 ...|.+.++..+|+|.|+|.+.|.
T Consensus        30 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~   89 (110)
T d1f97a2          30 SPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNG   89 (110)
T ss_dssp             BSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECS
T ss_pred             CCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEEC
Confidence            5678999999877543321                 124667788888888888877764

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0039  Score=40.64  Aligned_cols=84  Identities=15%  Similarity=0.262  Sum_probs=45.8

Q ss_pred             cCCEEEeCCCceEEeCCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccCCccEE--EecCCcEEEEEeecCCCCC--CC-
Q psy18191        130 RVPRITEHPASAVVPRHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEIGSHRI--LLPAGSLFFLSLVHGKKDT--DS-  202 (238)
Q Consensus       130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~~~--~~~~~~l~~~~vi~~v~~~--d~-  202 (238)
                      .+|.+...+........+.+.|.|.+.|. |. -.|+|++||..+.........  ...+|+......+.- ..+  +. 
T Consensus         4 ~~P~V~l~~Ps~~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v-~~~~W~~~   82 (107)
T d1c5cl2           4 AAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTL-SKADYEKH   82 (107)
T ss_dssp             BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEE-EHHHHTTC
T ss_pred             cCCEEEEECCCHHHhcCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEE-CHHHhCCC
Confidence            35665543222222235689999999886 43 479999999877532000000  112455443332211 332  23 


Q ss_pred             eEEEEEEEeCCC
Q psy18191        203 GVYWCVARNELG  214 (238)
Q Consensus       203 G~Y~C~a~N~~G  214 (238)
                      ..|+|.+.....
T Consensus        83 ~~ytC~V~H~~~   94 (107)
T d1c5cl2          83 KVYACEVTHQGL   94 (107)
T ss_dssp             CEEEEEEECTTC
T ss_pred             CEEEEEEEECCC
Confidence            479999997543

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=95.95  E-value=0.031  Score=36.75  Aligned_cols=70  Identities=19%  Similarity=0.332  Sum_probs=41.7

Q ss_pred             ceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEEe------eccC--------CccE-EEec--CCcEEEEEeecCCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSLV------SAEI--------GSHR-ILLP--AGSLFFLSLVHGKK  198 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~l------~~~~--------~~~~-~~~~--~~~l~~~~vi~~v~  198 (238)
                      ...+++|+++.|.|.+.|...  -.+.|++.  |+.+      ....        .++. +..+  ...+.+.  |..++
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~--i~~l~   86 (118)
T d1lo4h1           9 GDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQ--MSRLR   86 (118)
T ss_dssp             CCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEE--ECSCC
T ss_pred             CceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeec--ccccc
Confidence            355788999999999988754  35888863  2111      1110        0111 1111  1222222  67889


Q ss_pred             CCCCeEEEEEEEe
Q psy18191        199 DTDSGVYWCVARN  211 (238)
Q Consensus       199 ~~d~G~Y~C~a~N  211 (238)
                      .+|++.|.|-...
T Consensus        87 ~eDtA~YyCAr~~   99 (118)
T d1lo4h1          87 SEDTAIYYCARGT   99 (118)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             CCcceEEEecccC
Confidence            9999999996543

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=95.94  E-value=0.0044  Score=40.10  Aligned_cols=44  Identities=5%  Similarity=0.027  Sum_probs=29.6

Q ss_pred             cCCCccEEEecccccc----cc------------------ceEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLPQ----SK------------------QGLMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~----~~------------------~g~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..|.|.+.|++++...    ..                  .+...|.+.++..+|.|.|+|.+.|.
T Consensus        31 g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   96 (109)
T d2fdbp2          31 SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNS   96 (109)
T ss_dssp             CSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEEEEEEEC
Confidence            3568889999864311    10                  01246788899999999999888774

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.92  E-value=0.03  Score=36.96  Aligned_cols=70  Identities=21%  Similarity=0.443  Sum_probs=40.9

Q ss_pred             ceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CE------EeeccCC---------ccEEEec-CCcEEEEEeecCCCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GS------LVSAEIG---------SHRILLP-AGSLFFLSLVHGKKD  199 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~------~l~~~~~---------~~~~~~~-~~~l~~~~vi~~v~~  199 (238)
                      ...+++|+++.|.|.+.|...  -.+.|++.  |+      .+.....         ++..... .....+.+-|..++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~   88 (121)
T d2p49b1           9 GGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKP   88 (121)
T ss_dssp             CEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccc
Confidence            355788999999999987654  45788863  11      1111111         1222221 111112222678899


Q ss_pred             CCCeEEEEEE
Q psy18191        200 TDSGVYWCVA  209 (238)
Q Consensus       200 ~d~G~Y~C~a  209 (238)
                      +|++.|.|..
T Consensus        89 eDtAvYYCAr   98 (121)
T d2p49b1          89 EDTATYYCAA   98 (121)
T ss_dssp             GGCEEEEEEE
T ss_pred             cceeEEeeec
Confidence            9999999965

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.88  E-value=0.02  Score=38.27  Aligned_cols=71  Identities=18%  Similarity=0.437  Sum_probs=40.9

Q ss_pred             ceEEeCCCcEEEEEEEeeeCCC--EEEEEeC--CEE------eeccCC---------ccEEE-ecCCcEEEEEeecCCCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPEP--RIEWYKD--GSL------VSAEIG---------SHRIL-LPAGSLFFLSLVHGKKD  199 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~--g~~------l~~~~~---------~~~~~-~~~~~l~~~~vi~~v~~  199 (238)
                      ...+++|+++.|.|.+.|....  .+.|++.  |+.      |.....         ++... .+.....+.+-|..++.
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~   87 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP   87 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence            3456889999999999886543  5788863  221      121111         11111 11222222233788899


Q ss_pred             CCCeEEEEEEE
Q psy18191        200 TDSGVYWCVAR  210 (238)
Q Consensus       200 ~d~G~Y~C~a~  210 (238)
                      +|++.|.|-..
T Consensus        88 eDTAvYYCAr~   98 (126)
T d1rjca1          88 EDTAMYYCAAD   98 (126)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccCceeEEEee
Confidence            99999999654

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=95.87  E-value=0.0027  Score=40.15  Aligned_cols=40  Identities=10%  Similarity=-0.143  Sum_probs=27.7

Q ss_pred             ccEEEeccccccccce--------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         64 PICLRFQDLLPQSKQG--------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        64 ~~~~w~~~~~~~~~~g--------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      +.+.|++++..+....        ...|.+.++..+|+|.|+|.+.|.
T Consensus        33 ~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   80 (94)
T d1biha1          33 VKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETP   80 (94)
T ss_dssp             CEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEET
T ss_pred             eEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeC
Confidence            4689999988654322        124667778888888888777664

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=95.86  E-value=0.053  Score=35.68  Aligned_cols=69  Identities=13%  Similarity=0.407  Sum_probs=41.3

Q ss_pred             ceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEEee------c--cC---------CccEEEe-c--CCcEEEEEeec
Q psy18191        140 SAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSLVS------A--EI---------GSHRILL-P--AGSLFFLSLVH  195 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~l~------~--~~---------~~~~~~~-~--~~~l~~~~vi~  195 (238)
                      ...+++|+++.|.|.+.|...  -.+.|++.  |+.+.      .  +.         .++.... +  .+.+.+.  |.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~--~~   86 (120)
T d1dlfh_           9 GGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQ--MN   86 (120)
T ss_dssp             CCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEE--EC
T ss_pred             CceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccc--ee
Confidence            355788999999999987654  45888862  32211      1  00         0111111 1  2222222  67


Q ss_pred             CCCCCCCeEEEEEEE
Q psy18191        196 GKKDTDSGVYWCVAR  210 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~  210 (238)
                      .++.+|++.|.|-..
T Consensus        87 ~L~~eDtAvYYCA~~  101 (120)
T d1dlfh_          87 TLRAEDTGIYYCTGI  101 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             eccCCCceEEEeeEe
Confidence            889999999999543

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0039  Score=40.65  Aligned_cols=41  Identities=17%  Similarity=0.182  Sum_probs=29.1

Q ss_pred             CccEEEeccccc-ccc-c----------------eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         63 KPICLRFQDLLP-QSK-Q----------------GLMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        63 ~~~~~w~~~~~~-~~~-~----------------g~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.+.||+++.. ... .                +...|.|.++.+.|+|.|+|.+.|.
T Consensus        36 ~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   94 (110)
T d2avga1          36 PPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTK   94 (110)
T ss_dssp             SCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEEEEET
T ss_pred             CCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEEEEEC
Confidence            578999997642 111 0                1246788899999999999888763

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=95.83  E-value=0.045  Score=36.10  Aligned_cols=72  Identities=19%  Similarity=0.380  Sum_probs=41.9

Q ss_pred             ceEEeCCCcEEEEEEEeeeCC----CEEEEEeC--CEE------eeccCC--------ccEEE-ecCCcEEEEEeecCCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPE----PRIEWYKD--GSL------VSAEIG--------SHRIL-LPAGSLFFLSLVHGKK  198 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~----p~i~W~~~--g~~------l~~~~~--------~~~~~-~~~~~l~~~~vi~~v~  198 (238)
                      ...+++|+++.|.|.+.|...    -.+.|++.  |+.      +..+..        ++... .+.....+.+.|..++
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~   88 (120)
T d1ai1h1           9 PAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVT   88 (120)
T ss_dssp             CSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCC
T ss_pred             CceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeee
Confidence            456788999999999988643    24779863  221      111110        11111 1111212222378889


Q ss_pred             CCCCeEEEEEEEe
Q psy18191        199 DTDSGVYWCVARN  211 (238)
Q Consensus       199 ~~d~G~Y~C~a~N  211 (238)
                      .+|++.|.|-...
T Consensus        89 ~eDtAvYYCAr~~  101 (120)
T d1ai1h1          89 NEDTAMYYCSREN  101 (120)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             ccceeEEEEEecC
Confidence            9999999996543

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=95.83  E-value=0.0017  Score=40.98  Aligned_cols=42  Identities=5%  Similarity=-0.238  Sum_probs=30.0

Q ss_pred             CCCccEEEeccccccccce-EEEEEcCCCCCCCCCceEEEeCC
Q psy18191         61 YPKPICLRFQDLLPQSKQG-LMYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g-~~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      .+.+.+.||+++....... ..-+.+..+..+|+|.|+|.+.+
T Consensus        30 ~p~~~~~W~kng~~~~~~~~~~~l~I~~v~~~dsG~Y~C~a~n   72 (89)
T d1fnla2          30 TALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLV   72 (89)
T ss_dssp             CCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCcEEEEEEcccccceeccccccEECccceeccceEEEEEEe
Confidence            4556899999998554322 22456788889999999987655

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.80  E-value=0.029  Score=36.06  Aligned_cols=71  Identities=25%  Similarity=0.372  Sum_probs=36.6

Q ss_pred             CCCcEEEEEEEeeeCCC--EEEEEeC--CEEe------ecc---------CCccEEEec-CCcEEEEEeecCCCCCCCeE
Q psy18191        145 RHEPTTLNCKADGYPEP--RIEWYKD--GSLV------SAE---------IGSHRILLP-AGSLFFLSLVHGKKDTDSGV  204 (238)
Q Consensus       145 ~G~~~~L~C~~~g~P~p--~i~W~~~--g~~l------~~~---------~~~~~~~~~-~~~l~~~~vi~~v~~~d~G~  204 (238)
                      +|+++.|.|.+.|....  .+.|++.  |+.+      ...         ..++..... .....+.+-|..++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            58999999999886543  5889863  2211      111         012221221 11111222267889999999


Q ss_pred             EEEEEEeCCCc
Q psy18191        205 YWCVARNELGF  215 (238)
Q Consensus       205 Y~C~a~N~~G~  215 (238)
                      |.|-.....+.
T Consensus        81 YYCAr~~~~~~   91 (103)
T d1oari_          81 YYCARMWYYGT   91 (103)
T ss_dssp             EEEEEEECSSS
T ss_pred             EEeEEECCCCC
Confidence            99976554443

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=95.76  E-value=0.043  Score=36.59  Aligned_cols=71  Identities=20%  Similarity=0.428  Sum_probs=42.0

Q ss_pred             ceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eeccCC---------ccEEE-ec--CCcEEEEEeecCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAEIG---------SHRIL-LP--AGSLFFLSLVHGK  197 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~~~---------~~~~~-~~--~~~l~~~~vi~~v  197 (238)
                      ...+++|+++.|.|++.|...  -.+.|++.  |+.      +.....         ++... ..  ...+.+.  |..+
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~--~~~L   86 (127)
T d2fb4h1           9 GGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQ--MDSL   86 (127)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEE--ECSC
T ss_pred             CceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEee--eeee
Confidence            456788999999999987543  45788763  111      111111         11111 11  1222222  6788


Q ss_pred             CCCCCeEEEEEEEeC
Q psy18191        198 KDTDSGVYWCVARNE  212 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N~  212 (238)
                      +.+|++.|.|-....
T Consensus        87 ~~eDTA~YYCAr~~~  101 (127)
T d2fb4h1          87 RPEDTGVYFCARDGG  101 (127)
T ss_dssp             CGGGCEEEEEEEECS
T ss_pred             eecceeEEEEEEecC
Confidence            999999999976543

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=95.74  E-value=0.0018  Score=40.70  Aligned_cols=43  Identities=14%  Similarity=-0.036  Sum_probs=31.0

Q ss_pred             CCCccEEEeccccccccce-EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQG-LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g-~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .+.+.+.|||++..+.... -..+.+..+..+|+|.|+|.+.+.
T Consensus        28 ~p~~~~~W~k~g~~~~~~~~~~~l~i~~v~~~dsG~Y~C~a~n~   71 (88)
T d2fcba2          28 KPLVKVTFFQNGKSKKFSRSDPNFSIPQANHSHSGDYHCTGNIG   71 (88)
T ss_dssp             CCCEEEEEEETTEEEEEESSCCEEEETTCCGGGCEEEEEEEEET
T ss_pred             CCCcEEEEEeecccccccccccccccCccCHHHCCeEEEEEEeC
Confidence            4566899999998654321 234677888899999999876653

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.72  E-value=0.0015  Score=41.69  Aligned_cols=43  Identities=2%  Similarity=-0.076  Sum_probs=28.8

Q ss_pred             CCCccEEEeccccccccce--------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQG--------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g--------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.|.+.|++++.++....        ...+.+..+..+|+|.|+|.+.|.
T Consensus        34 ~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N~   84 (97)
T d1cs6a1          34 NPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNA   84 (97)
T ss_dssp             ESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEET
T ss_pred             eCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEEEC
Confidence            5678999999987553321        134555666677788888776664

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.72  E-value=0.036  Score=36.72  Aligned_cols=70  Identities=17%  Similarity=0.403  Sum_probs=41.6

Q ss_pred             ceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eeccC---------CccEEEe-c--CCcEEEEEeecCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAEI---------GSHRILL-P--AGSLFFLSLVHGK  197 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~~---------~~~~~~~-~--~~~l~~~~vi~~v  197 (238)
                      ...+++|+++.|.|.+.|...  -.+.|++.  |+.      |....         .++.... .  ...+.+  .|..+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL--~m~sL   86 (122)
T d1bz7b1           9 GGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFL--QMTSL   86 (122)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEE--EECSC
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEe--eeeee
Confidence            345688999999999988654  34788873  111      11110         1111111 1  122222  26788


Q ss_pred             CCCCCeEEEEEEEe
Q psy18191        198 KDTDSGVYWCVARN  211 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N  211 (238)
                      +.+|++.|.|-..+
T Consensus        87 ~~eDTAvYYCAr~~  100 (122)
T d1bz7b1          87 RSEDTAIYYCTRGG  100 (122)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             cccCceEEEeecCC
Confidence            99999999996544

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.71  E-value=0.071  Score=35.69  Aligned_cols=73  Identities=15%  Similarity=0.397  Sum_probs=42.7

Q ss_pred             CceEEeCCCcEEEEEEEeeeCCC--EEEEEeC--CEE------eeccC---------CccEEEe-cC--CcEEEEEeecC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEP--RIEWYKD--GSL------VSAEI---------GSHRILL-PA--GSLFFLSLVHG  196 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~--g~~------l~~~~---------~~~~~~~-~~--~~l~~~~vi~~  196 (238)
                      -...+++|+++.|.|.+.|...-  .+.|++.  |+.      |....         .++.... .+  .++.+.  |..
T Consensus         7 G~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~--~~~   84 (133)
T d1rzfh1           7 GAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLH--LRG   84 (133)
T ss_dssp             CCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEE--ECS
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEe--ecc
Confidence            34567899999999999886543  4778762  211      11110         1111111 11  222222  678


Q ss_pred             CCCCCCeEEEEEEEeCC
Q psy18191        197 KKDTDSGVYWCVARNEL  213 (238)
Q Consensus       197 v~~~d~G~Y~C~a~N~~  213 (238)
                      ++.+|++.|.|-.....
T Consensus        85 L~~eDtA~YYCAr~~~~  101 (133)
T d1rzfh1          85 LRSDDTAVYYCASNSIA  101 (133)
T ss_dssp             CCGGGCEEEEEEEEECC
T ss_pred             CCCCCCEEEEeeeccCC
Confidence            89999999999654433

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.70  E-value=0.051  Score=36.04  Aligned_cols=70  Identities=14%  Similarity=0.400  Sum_probs=41.8

Q ss_pred             ceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eeccC---------CccEEE-ec--CCcEEEEEeecCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAEI---------GSHRIL-LP--AGSLFFLSLVHGK  197 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~~---------~~~~~~-~~--~~~l~~~~vi~~v  197 (238)
                      ...+++|+++.|.|.+.|...  -.+.|++.  |+.      |....         .++..+ ..  ...+.+.  |..+
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lq--m~sL   86 (125)
T d1op3h1           9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQ--MHKM   86 (125)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEE--ECSC
T ss_pred             CceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeee--eecc
Confidence            356788999999999987543  45888863  211      11111         111111 11  1223222  6788


Q ss_pred             CCCCCeEEEEEEEe
Q psy18191        198 KDTDSGVYWCVARN  211 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N  211 (238)
                      +.+|++.|.|-...
T Consensus        87 ~~eDTAvYYCAr~~  100 (125)
T d1op3h1          87 RVEDTAIYYCARKG  100 (125)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCccceeEeEeecc
Confidence            99999999996543

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0046  Score=38.89  Aligned_cols=44  Identities=11%  Similarity=-0.058  Sum_probs=32.4

Q ss_pred             CCCccEEEeccccccccc-------eEEEEEcCCCCCCCCC-ceEEEeCCCc
Q psy18191         61 YPKPICLRFQDLLPQSKQ-------GLMYLVGSQASPDYPN-RFSLCNNKTW  104 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~-------g~~~l~~~~~~~~~~g-~y~~~~~~~~  104 (238)
                      .|.|.+.|++++..+...       +...|.+.++..+|.| .|+|.+.|..
T Consensus        29 ~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~   80 (92)
T d2ifga1          29 RGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDV   80 (92)
T ss_dssp             SSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETT
T ss_pred             CCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCC
Confidence            567889999998754332       2356788888899998 5998877753

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.65  E-value=0.0058  Score=38.70  Aligned_cols=41  Identities=2%  Similarity=-0.198  Sum_probs=27.9

Q ss_pred             CCccEEEeccccccccce-------EEEEEcCCCCCCCCCceEEEeCC
Q psy18191         62 PKPICLRFQDLLPQSKQG-------LMYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~g-------~~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      +.+.+.|++++..+....       ...|.+..+..+|.|.|+|.+.+
T Consensus        30 ~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N   77 (96)
T d1l6za2          30 IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISN   77 (96)
T ss_dssp             SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEES
T ss_pred             CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEe
Confidence            346789999988665432       12456677777777777776665

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.63  E-value=0.0089  Score=36.63  Aligned_cols=54  Identities=22%  Similarity=0.419  Sum_probs=35.1

Q ss_pred             CCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191        145 RHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       145 ~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N  211 (238)
                      +-..+.|.|..   ...+++|++++..+.....      ...++-+-..    ...-.|.|.|.+..
T Consensus        21 ~dGsV~L~Cn~---~~k~i~W~kdg~~i~~~~~------~~ktlnLG~~----~~DPRGiY~C~g~~   74 (86)
T d1jbja1          21 GDGSVLLTCGL---TDKTIKWLKDGSIISPLNA------TKNTWNLGNN----AKDPRGTYQCQGAK   74 (86)
T ss_dssp             SSCEEEEECSS---SCSCEEEEETTEECCCSSC------CSSCCEEEET----TSCCEEEEEEEESS
T ss_pred             cCCeEEEEeCC---CCcEEEEecCCceeccccc------ccceeecCCc----ccCCCcceEcCCCc
Confidence            34678999954   3458999999988764211      1233444443    55568999997543

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.62  E-value=0.035  Score=36.70  Aligned_cols=70  Identities=20%  Similarity=0.473  Sum_probs=41.3

Q ss_pred             ceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eeccC---------CccEEEe-c--CCcEEEEEeecCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAEI---------GSHRILL-P--AGSLFFLSLVHGK  197 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~~---------~~~~~~~-~--~~~l~~~~vi~~v  197 (238)
                      ...+++|+++.|.|.+.|...  -.+.|++.  |+.      |....         .++.... +  ...+.+  -|..+
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L--~i~sL   86 (121)
T d1ol0a_           9 GGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYL--QMNSL   86 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEE--EECSC
T ss_pred             CceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEe--eeeec
Confidence            345688999999999987543  35788863  211      11110         1121111 1  122222  26888


Q ss_pred             CCCCCeEEEEEEEe
Q psy18191        198 KDTDSGVYWCVARN  211 (238)
Q Consensus       198 ~~~d~G~Y~C~a~N  211 (238)
                      +.+|++.|.|-...
T Consensus        87 ~~eDtAvYYCAr~~  100 (121)
T d1ol0a_          87 RAEDTAVYYCAREP  100 (121)
T ss_dssp             CGGGCEEEEEEECC
T ss_pred             ccccceEEEEEEec
Confidence            99999999996543

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.56  E-value=0.029  Score=37.58  Aligned_cols=69  Identities=16%  Similarity=0.383  Sum_probs=41.4

Q ss_pred             CceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eeccCC---------ccEEE-ec--CCcEEEEEeecC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAEIG---------SHRIL-LP--AGSLFFLSLVHG  196 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~~~---------~~~~~-~~--~~~l~~~~vi~~  196 (238)
                      ....+++|+++.|.|.+.|...  ..+.|++.  |+.      |.....         ++... ..  ..++.+.  |..
T Consensus         8 g~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~--~~s   85 (130)
T d1rzga1           8 GAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYME--LSS   85 (130)
T ss_dssp             CCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEE--ECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEee--eee
Confidence            4456788999999999987643  45889863  211      111101         11111 11  1222222  677


Q ss_pred             CCCCCCeEEEEEE
Q psy18191        197 KKDTDSGVYWCVA  209 (238)
Q Consensus       197 v~~~d~G~Y~C~a  209 (238)
                      ++.+|++.|.|-.
T Consensus        86 L~~eDtA~YYCAr   98 (130)
T d1rzga1          86 LRSEDTAVFYCAS   98 (130)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCccEEEEEEE
Confidence            8999999999964

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=95.55  E-value=0.033  Score=37.13  Aligned_cols=70  Identities=19%  Similarity=0.355  Sum_probs=41.2

Q ss_pred             eEEeCCCcEEEEEEEeeeCC---CEEEEEeC--CEEe------eccCC--------ccE-EEecCCcEEEEEeecCCCCC
Q psy18191        141 AVVPRHEPTTLNCKADGYPE---PRIEWYKD--GSLV------SAEIG--------SHR-ILLPAGSLFFLSLVHGKKDT  200 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~~g~P~---p~i~W~~~--g~~l------~~~~~--------~~~-~~~~~~~l~~~~vi~~v~~~  200 (238)
                      ..+++|+++.|.|.+.|...   -.+.|++.  |+.+      .....        ++. +..+.....+.+-|..++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~e   89 (127)
T d3cx5j1          10 GLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTE   89 (127)
T ss_dssp             SEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccc
Confidence            45688999999999988754   35889873  3222      11100        111 11111111122226788999


Q ss_pred             CCeEEEEEEE
Q psy18191        201 DSGVYWCVAR  210 (238)
Q Consensus       201 d~G~Y~C~a~  210 (238)
                      |++.|.|-..
T Consensus        90 DtAvYyCAr~   99 (127)
T d3cx5j1          90 DTATYYCARS   99 (127)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeeee
Confidence            9999999654

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=95.53  E-value=0.024  Score=37.89  Aligned_cols=70  Identities=20%  Similarity=0.461  Sum_probs=41.7

Q ss_pred             ceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CE---Ee---ecc----CC----------ccEEEe---cCCcEEEEE
Q psy18191        140 SAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GS---LV---SAE----IG----------SHRILL---PAGSLFFLS  192 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~---~l---~~~----~~----------~~~~~~---~~~~l~~~~  192 (238)
                      ...+++|+++.|.|.+.|...  -.+.|++.  |+   .+   ...    ..          ++....   ....+.+  
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L--   86 (127)
T d1i3ua_           9 GGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNL--   86 (127)
T ss_dssp             CEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEE--
T ss_pred             CceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEE--
Confidence            345678999999999987643  45889873  11   11   000    00          111111   1222222  


Q ss_pred             eecCCCCCCCeEEEEEEEe
Q psy18191        193 LVHGKKDTDSGVYWCVARN  211 (238)
Q Consensus       193 vi~~v~~~d~G~Y~C~a~N  211 (238)
                      .|..++.+|++.|.|-+.-
T Consensus        87 ~i~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          87 QMNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             EECSCCGGGCEEEEEEEES
T ss_pred             eeecccccceeEEEEEEEe
Confidence            3788899999999997653

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0032  Score=40.77  Aligned_cols=70  Identities=14%  Similarity=0.245  Sum_probs=40.0

Q ss_pred             CCCcEEEEEEEeeeCC--CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCC--CeEEEEEEEeCCCce
Q psy18191        145 RHEPTTLNCKADGYPE--PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTD--SGVYWCVARNELGFA  216 (238)
Q Consensus       145 ~G~~~~L~C~~~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d--~G~Y~C~a~N~~G~~  216 (238)
                      .++.+.|.|.+.|.-+  -.|+|.+++...... ........+|...+...+.. ..++  ...|+|.+....+..
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~-t~~~~~~~~gtys~~S~L~v-~~~~w~~~~ytC~V~H~~~~~   92 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVH-TFPAVLQSSGLYSLSSVVTV-PSSSLGTQTYICNVNHKPSNT   92 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE-ECCCEECTTSCEEEEEEEEE-EGGGGGTCCCEEEEEEGGGTE
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEE-ECCCeECCCCCEEEEEEEEE-CccccCCCeEEEEEEeCCCCE
Confidence            3677999999988743  369998776432211 11112234555544333221 2222  457999999866544

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.47  E-value=0.096  Score=34.39  Aligned_cols=70  Identities=19%  Similarity=0.453  Sum_probs=42.1

Q ss_pred             CceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEE------eeccC---------CccEEE-ec--CCcEEEEEeecC
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSL------VSAEI---------GSHRIL-LP--AGSLFFLSLVHG  196 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~------l~~~~---------~~~~~~-~~--~~~l~~~~vi~~  196 (238)
                      -...+++|+++.|.|.+.|...  -.+.|.+.  |+.      |....         .++... ..  .+.+.+.  |..
T Consensus         8 g~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~--m~~   85 (120)
T d1ad9b1           8 GAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYME--LSS   85 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEE--ECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEecc--ccc
Confidence            3456789999999999987654  35888763  211      11110         111111 11  2233332  678


Q ss_pred             CCCCCCeEEEEEEE
Q psy18191        197 KKDTDSGVYWCVAR  210 (238)
Q Consensus       197 v~~~d~G~Y~C~a~  210 (238)
                      ++.+|++.|.|-..
T Consensus        86 L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          86 LRSEDTAFYFCARE   99 (120)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEEEc
Confidence            89999999999653

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.34  E-value=0.0075  Score=38.22  Aligned_cols=41  Identities=12%  Similarity=-0.110  Sum_probs=28.2

Q ss_pred             CccEEEecc-ccccccc-----------eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         63 KPICLRFQD-LLPQSKQ-----------GLMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        63 ~~~~~w~~~-~~~~~~~-----------g~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .+.+.|+++ +..+...           +...|.+.++..+|+|.|+|.+.|.
T Consensus        30 ~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   82 (97)
T d1epfa1          30 DKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAE   82 (97)
T ss_dssp             CCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeC
Confidence            468999984 4332211           1246788899999999999877663

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=95.26  E-value=0.052  Score=35.87  Aligned_cols=70  Identities=16%  Similarity=0.433  Sum_probs=42.0

Q ss_pred             ceEEeCCCcEEEEEEEeeeCCC--EEEEEeC--CEE------eeccC-----------CccEEEe-c--CCcEEEEEeec
Q psy18191        140 SAVVPRHEPTTLNCKADGYPEP--RIEWYKD--GSL------VSAEI-----------GSHRILL-P--AGSLFFLSLVH  195 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~--g~~------l~~~~-----------~~~~~~~-~--~~~l~~~~vi~  195 (238)
                      ...+++|+++.|.|.+.|....  .+.|++.  |+.      +....           .++.... +  ..++.+.  |.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~--~~   86 (122)
T d1q9rb1           9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQ--MN   86 (122)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEE--EC
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccc--ee
Confidence            4567889999999999886543  5889863  211      11100           0111111 1  2222222  67


Q ss_pred             CCCCCCCeEEEEEEEe
Q psy18191        196 GKKDTDSGVYWCVARN  211 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~N  211 (238)
                      .++.+|++.|.|....
T Consensus        87 sL~~eDTAvYYCar~~  102 (122)
T d1q9rb1          87 TLRAEDSATYYCARDH  102 (122)
T ss_dssp             SCCGGGCEEEEEEECC
T ss_pred             eeccCcceEEEEEecC
Confidence            8899999999997643

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=95.25  E-value=0.043  Score=36.76  Aligned_cols=69  Identities=19%  Similarity=0.410  Sum_probs=41.1

Q ss_pred             ceEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEEe------ec--cC---------CccEEEe-c--CCcEEEEEeec
Q psy18191        140 SAVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSLV------SA--EI---------GSHRILL-P--AGSLFFLSLVH  195 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~l------~~--~~---------~~~~~~~-~--~~~l~~~~vi~  195 (238)
                      ...+++|+++.|.|.+.|...  ..+.|++.  |+.+      ..  +.         .++.... .  ..++.+.  |.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq--~~   86 (131)
T d3c2ah1           9 GGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQ--MN   86 (131)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEE--EC
T ss_pred             CceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecc--ee
Confidence            356789999999999987654  35888863  2211      10  00         1111111 1  1223222  67


Q ss_pred             CCCCCCCeEEEEEEE
Q psy18191        196 GKKDTDSGVYWCVAR  210 (238)
Q Consensus       196 ~v~~~d~G~Y~C~a~  210 (238)
                      .++.+|++.|.|-..
T Consensus        87 ~L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          87 SLKTEDTAVYSCTTD  101 (131)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccccCCceEEEEecc
Confidence            889999999999654

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0085  Score=38.37  Aligned_cols=43  Identities=5%  Similarity=-0.014  Sum_probs=29.4

Q ss_pred             CCCccEEEeccccccccce-------------E----EEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQG-------------L----MYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g-------------~----~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.|.+.|++++.+.....             .    ..|.+.++..+|+|.|+|.+.+.
T Consensus        31 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   90 (105)
T d1nbqa1          31 FSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEE   90 (105)
T ss_dssp             CSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEET
T ss_pred             CCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEEC
Confidence            4577899999765322100             0    25788889999999999877663

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.013  Score=37.74  Aligned_cols=45  Identities=11%  Similarity=-0.037  Sum_probs=31.0

Q ss_pred             cCCCccEEEeccccccccce---------------------EEEEEcCCCCCCCCC-ceEEEeCCCc
Q psy18191         60 FYPKPICLRFQDLLPQSKQG---------------------LMYLVGSQASPDYPN-RFSLCNNKTW  104 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~g---------------------~~~l~~~~~~~~~~g-~y~~~~~~~~  104 (238)
                      ..|.|.+.|++++..+....                     ...|.+.++.+.|.| .|+|.+.|..
T Consensus        28 g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~N~~   94 (107)
T d1iray3          28 GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTH   94 (107)
T ss_dssp             ECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEECSS
T ss_pred             cCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEEeCC
Confidence            34678899999876432110                     246778888888888 4888887753

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.90  E-value=0.062  Score=35.38  Aligned_cols=70  Identities=16%  Similarity=0.415  Sum_probs=41.4

Q ss_pred             CceEEeCCCcEEEEEEEeeeCCC--EEEEEeC--CEEe------ecc-CCcc---------EEEe--c--CCcEEEEEee
Q psy18191        139 ASAVVPRHEPTTLNCKADGYPEP--RIEWYKD--GSLV------SAE-IGSH---------RILL--P--AGSLFFLSLV  194 (238)
Q Consensus       139 ~~~~~~~G~~~~L~C~~~g~P~p--~i~W~~~--g~~l------~~~-~~~~---------~~~~--~--~~~l~~~~vi  194 (238)
                      ....+++|+++.|.|++.|....  .+.|++.  |+.+      ... ....         ++.+  +  ..++.+  -|
T Consensus         8 G~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL--~~   85 (121)
T d1nfdf1           8 GGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYL--QM   85 (121)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEE--EE
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeec--ee
Confidence            34677899999999999886543  4778872  2211      110 0000         1111  1  222222  26


Q ss_pred             cCCCCCCCeEEEEEEE
Q psy18191        195 HGKKDTDSGVYWCVAR  210 (238)
Q Consensus       195 ~~v~~~d~G~Y~C~a~  210 (238)
                      ..++.+|++.|.|-..
T Consensus        86 ~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          86 NRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             ESCCGGGCEECEEEEE
T ss_pred             cccCCCcceEEEEecc
Confidence            7789999999999654

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.87  E-value=0.0024  Score=42.07  Aligned_cols=66  Identities=18%  Similarity=0.381  Sum_probs=39.0

Q ss_pred             CCCcEEEEEEEeeeCC--CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCC--Ce-EEEEEEEeCC
Q psy18191        145 RHEPTTLNCKADGYPE--PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTD--SG-VYWCVARNEL  213 (238)
Q Consensus       145 ~G~~~~L~C~~~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d--~G-~Y~C~a~N~~  213 (238)
                      .++.+.|.|.+.|.-+  -.|.|.+++.....  ........+|+......+. +..+|  .| .|+|.+....
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~~--~~~~~~~~dgtys~~S~L~-v~~~~W~~~~~ytC~V~H~~   96 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSSEPSDYK--NTPPVFDTDGSFFLYSRLK-VDTDAWNNGESFTCSVMHEA   96 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSCCTTTEE--EEEEECCSSCCCEEEEEEC-CCSSCCHHHHCCEEEEEETT
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeCCCCCcE--EcccEECCCCcEEEEEEEE-ECHHHhCCCCEEEEEEEeCC
Confidence            4567899999988633  47999887642111  0111223456555544332 34444  34 6999998854

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.0042  Score=39.29  Aligned_cols=41  Identities=5%  Similarity=-0.181  Sum_probs=29.7

Q ss_pred             CCccEEEeccccccccce-------EEEEEcCCCCCCCCCceEEEeCC
Q psy18191         62 PKPICLRFQDLLPQSKQG-------LMYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~g-------~~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      +.|.+.|++++.++....       -..|.+.++.++|+|.|+|.+.+
T Consensus        24 ~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n   71 (92)
T d1olza1          24 NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEE   71 (92)
T ss_dssp             TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEE
Confidence            456889999887554322       12477888999999999987765

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.0041  Score=38.67  Aligned_cols=40  Identities=15%  Similarity=0.020  Sum_probs=26.8

Q ss_pred             cCCCccEEEeccccccccceEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~g~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..|.|.+.|++++......+.    +..+...|+|.|+|.+.|.
T Consensus        30 G~P~P~v~W~k~g~~~~~~~~----~~~v~~~d~G~Y~C~A~N~   69 (84)
T d2oz4a3          30 GNPLPELKCLKDGTFPLPIGE----SVTVTRDLEGTYLCRARST   69 (84)
T ss_dssp             EESCCEEEEEETTTEECCTTS----CEECCGGGCEEEEEEEEET
T ss_pred             EcCccEEEEEEeeccceeeee----eeccccCCCCEEEEEEEcC
Confidence            357889999998874443321    1245667888888777764

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.68  E-value=0.017  Score=38.03  Aligned_cols=70  Identities=20%  Similarity=0.392  Sum_probs=40.1

Q ss_pred             eEEeCCCcEEEEEEEeeeCC--CEEEEEeC--CEEe------eccCC--------cc-EEEe--cCCcEEEEEeecCCCC
Q psy18191        141 AVVPRHEPTTLNCKADGYPE--PRIEWYKD--GSLV------SAEIG--------SH-RILL--PAGSLFFLSLVHGKKD  199 (238)
Q Consensus       141 ~~~~~G~~~~L~C~~~g~P~--p~i~W~~~--g~~l------~~~~~--------~~-~~~~--~~~~l~~~~vi~~v~~  199 (238)
                      ..+++|+++.|.|.+.|...  -.+.|++.  |+.+      .....        ++ .+..  ...++.+  -|..++.
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L--~~~~L~~   87 (116)
T d1fn4b1          10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFL--KMNSLQT   87 (116)
T ss_dssp             SBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEEC--CEESCCC
T ss_pred             ceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhc--ceeccCC
Confidence            34578999999999988654  35789862  2211      11100        00 0111  1122222  2667799


Q ss_pred             CCCeEEEEEEEeC
Q psy18191        200 TDSGVYWCVARNE  212 (238)
Q Consensus       200 ~d~G~Y~C~a~N~  212 (238)
                      +|++.|.|-....
T Consensus        88 eDTAvYyCAr~~~  100 (116)
T d1fn4b1          88 DDTGTYYCTRDLY  100 (116)
T ss_dssp             CCCEEEEEEEECS
T ss_pred             CCCEEEEEEeecC
Confidence            9999999955433

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.035  Score=32.86  Aligned_cols=49  Identities=16%  Similarity=0.233  Sum_probs=28.4

Q ss_pred             CcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191        147 EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNEL  213 (238)
Q Consensus       147 ~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~  213 (238)
                      +.+.|.|.      -.|.|++++..+..        ....++-+-..    ...-.|.|.|.+....
T Consensus        10 ~~V~L~Cn------~si~W~k~~~~~~~--------~~~k~lnLG~~----~~DPRG~Y~C~~~e~~   58 (74)
T d1xiwb_          10 DRVFVNCN------TSITWVEGTVGTLL--------SDITRLDLGKR----ILDPRGIYRCNGTDIY   58 (74)
T ss_dssp             TEEEEECS------SCEEEEEECCCEEE--------GGGTEEEEEEG----GGCCEEEEEEC-----
T ss_pred             CeEEEEcc------CeeEEecCCccccc--------CCccEeecCCc----ccCCCcceEeCCcccc
Confidence            47889995      36999998643322        12234444443    5556899999876443

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.0073  Score=37.77  Aligned_cols=41  Identities=5%  Similarity=-0.096  Sum_probs=29.5

Q ss_pred             CCccEEEeccccccccc-eEEEEEcCCCCCCCCCceEEEeCC
Q psy18191         62 PKPICLRFQDLLPQSKQ-GLMYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~-g~~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      +...+.|||++..+... ...-+.+..+..+|+|.|.|.+.+
T Consensus        29 ~~~~~~w~k~g~~~~~~~~~~~l~i~~~~~~dsG~Y~C~a~n   70 (89)
T d1f2qa2          29 DVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKV   70 (89)
T ss_dssp             CEEEEEEEETTEECCSCCCSSEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeEEEEEEeeeccccccccceEEEeeeeeecCcEEEEEEEe
Confidence            45689999999855432 223467788899999999987655

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.70  E-value=0.075  Score=34.75  Aligned_cols=68  Identities=26%  Similarity=0.602  Sum_probs=40.8

Q ss_pred             ceEEeCCCcEEEEEEEeeeC--CCEEEEEeC--CE---E---eeccCCc--------cEEEec----CCcEEEEEeecCC
Q psy18191        140 SAVVPRHEPTTLNCKADGYP--EPRIEWYKD--GS---L---VSAEIGS--------HRILLP----AGSLFFLSLVHGK  197 (238)
Q Consensus       140 ~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~--g~---~---l~~~~~~--------~~~~~~----~~~l~~~~vi~~v  197 (238)
                      ...+++|+++.|.|.+.|..  .-.+.|++.  |+   .   |......        .++.++    ..++.+.  |..+
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~--~~sL   86 (117)
T d1b2wh1           9 GGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQ--MNSL   86 (117)
T ss_dssp             CCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEE--ECSC
T ss_pred             CceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEee--eccc
Confidence            45678999999999998754  345778863  21   1   1111110        122221    2223322  6788


Q ss_pred             CCCCCeEEEEEE
Q psy18191        198 KDTDSGVYWCVA  209 (238)
Q Consensus       198 ~~~d~G~Y~C~a  209 (238)
                      +.+|++.|.|-.
T Consensus        87 ~~eDTAvYYCAr   98 (117)
T d1b2wh1          87 RPEDTAVYYCAR   98 (117)
T ss_dssp             CGGGCEEEECCE
T ss_pred             cCCcceEEEEcc
Confidence            999999999954

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.57  E-value=0.03  Score=36.27  Aligned_cols=43  Identities=7%  Similarity=-0.173  Sum_probs=29.7

Q ss_pred             CCCccEEEeccccccccce---------------EEEEEcCCCCCCC-CCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSKQG---------------LMYLVGSQASPDY-PNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~~g---------------~~~l~~~~~~~~~-~g~y~~~~~~~  103 (238)
                      .+.+.+.|++++..+....               ...|.|.++...| +|.|+|.+.|.
T Consensus        34 ~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~   92 (115)
T d2crya1          34 PPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNS   92 (115)
T ss_dssp             SCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECS
T ss_pred             CCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEEC
Confidence            4456789999877443221               1247788888887 68899888875

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.56  Score=29.15  Aligned_cols=43  Identities=21%  Similarity=0.226  Sum_probs=33.6

Q ss_pred             EEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCcee-EEEEEEEEc
Q psy18191        180 RILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR-SKNATLDVA  226 (238)
Q Consensus       180 ~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~-s~~~~L~V~  226 (238)
                      .-.+.+|+|.    |+.+.+.|+|.|.-.+.|.-|... ..++.|.|.
T Consensus        57 y~i~~nGtLk----IK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~  100 (101)
T d1hnfa1          57 YKLFKNGTLK----IKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ  100 (101)
T ss_dssp             EEECTTSCEE----ECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred             EEEccCCcEE----eeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEee
Confidence            4456789998    566699999999999999999862 246777765

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.034  Score=35.59  Aligned_cols=41  Identities=5%  Similarity=-0.100  Sum_probs=29.3

Q ss_pred             ccEEEeccccccccc------eEEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191         64 PICLRFQDLLPQSKQ------GLMYLVGSQASPDYPNRFSLCNNKTW  104 (238)
Q Consensus        64 ~~~~w~~~~~~~~~~------g~~~l~~~~~~~~~~g~y~~~~~~~~  104 (238)
                      .++.|++++..+...      ....|.+.....+|+|.|+|.+.+.+
T Consensus        37 ~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~   83 (103)
T d1iama1          37 LTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDL   83 (103)
T ss_dssp             EEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEEC
T ss_pred             eEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEeCC
Confidence            468899998755432      23456677888889999998887744

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.98  E-value=0.069  Score=33.55  Aligned_cols=24  Identities=8%  Similarity=0.010  Sum_probs=18.3

Q ss_pred             EEEEcCCCC-CCCCCceEEEeCCCc
Q psy18191         81 MYLVGSQAS-PDYPNRFSLCNNKTW  104 (238)
Q Consensus        81 ~~l~~~~~~-~~~~g~y~~~~~~~~  104 (238)
                      ..|.+.++. .+|+|.|+|.+.|..
T Consensus        65 ~~L~I~~v~~~~D~G~Y~C~A~N~~   89 (101)
T d3b5ha1          65 SELHIENLNMEADPGQYRCNGTSSK   89 (101)
T ss_dssp             EEEEECSCCTTTSSEEEEEEEEETT
T ss_pred             EEEEEeccccccCCEEEEEEEEECC
Confidence            467788876 578999998887753

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=0.019  Score=37.01  Aligned_cols=42  Identities=10%  Similarity=-0.054  Sum_probs=25.2

Q ss_pred             CCccEEEeccccccccce-----------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191         62 PKPICLRFQDLLPQSKQG-----------LMYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        62 ~~~~~~w~~~~~~~~~~g-----------~~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      +.+++.||+++..+....           ...|.+.....+|+|.|+|.+.+.
T Consensus        33 p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~   85 (106)
T d1zxqa1          33 DSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLD   85 (106)
T ss_dssp             GGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             CCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEec
Confidence            456799999987554321           123344444556666788776653

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=92.72  E-value=0.04  Score=33.70  Aligned_cols=37  Identities=14%  Similarity=0.001  Sum_probs=26.0

Q ss_pred             cEEEeccccccccceEEEEEcCCCCCCCCCceEEEeCC
Q psy18191         65 ICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        65 ~~~w~~~~~~~~~~g~~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      .+.|++++......+ ..+.+.++..+|+|.|+|.+.+
T Consensus        37 ~~~~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~a~~   73 (84)
T d1fnla1          37 STQWFHNESLISSQA-SSYFIDAATVNDSGEYRCQTNL   73 (84)
T ss_dssp             CCEEEETTEEEESSC-SEEEESSCCGGGCEEEEEECSS
T ss_pred             EEEEeeeceeeeecc-eeeEecCCcccCCEEEEEEccC
Confidence            467888877544333 2467888889999999976554

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.44  E-value=0.047  Score=33.19  Aligned_cols=37  Identities=8%  Similarity=-0.041  Sum_probs=26.2

Q ss_pred             cEEEeccccccccceEEEEEcCCCCCCCCCceEEEeCC
Q psy18191         65 ICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        65 ~~~w~~~~~~~~~~g~~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      .+.|++++..+...+. .|.+..+..+|+|.|.|.+.+
T Consensus        33 ~~~~~~~~~~~~~~~~-~l~i~~v~~~d~G~Y~C~a~~   69 (82)
T d1f2qa1          33 STKWFHNGSLSEETNS-SLNIVNAKFEDSGEYKCQHQQ   69 (82)
T ss_dssp             CCEEEETTEECSCCSS-EEEECSCCGGGCEEEEEECTT
T ss_pred             ceeeeeeeeeeecccc-eeEECCCChhhCCcEEEEecC
Confidence            4568888775544332 367788888999999976655

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.86  E-value=0.026  Score=35.76  Aligned_cols=43  Identities=5%  Similarity=-0.052  Sum_probs=28.0

Q ss_pred             CCCccEEEecccccccc----ce---------E----EEEEcCCCCCCCCCceEEEeCCC
Q psy18191         61 YPKPICLRFQDLLPQSK----QG---------L----MYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~----~g---------~----~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      .|.|.+.|++.+.....    ..         .    ..|.+.++..+|+|.|+|.+.+.
T Consensus        28 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n~   87 (102)
T d1f97a1          28 FSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEE   87 (102)
T ss_dssp             CSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEET
T ss_pred             CCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEEEEC
Confidence            45678999986542111    00         1    24778888899999999877653

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.56  E-value=0.055  Score=33.53  Aligned_cols=42  Identities=7%  Similarity=-0.020  Sum_probs=27.2

Q ss_pred             CCCccEEEecccccccc---ce----------E------EEEEcCCCCCCCCCceEEEeCC
Q psy18191         61 YPKPICLRFQDLLPQSK---QG----------L------MYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        61 ~~~~~~~w~~~~~~~~~---~g----------~------~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      .|.+.+.|++++..+..   .+          .      ..|.|.++.++|+|.|+|.+.+
T Consensus        21 ~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1          21 VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence            35667899997653311   00          1      2477788888888888876555

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=90.45  E-value=0.089  Score=34.01  Aligned_cols=44  Identities=14%  Similarity=0.181  Sum_probs=26.4

Q ss_pred             cCCCccEEEeccccccccce--------E-----EEEEcCCCCCCCCC---ceEEEeCCC
Q psy18191         60 FYPKPICLRFQDLLPQSKQG--------L-----MYLVGSQASPDYPN---RFSLCNNKT  103 (238)
Q Consensus        60 ~~~~~~~~w~~~~~~~~~~g--------~-----~~l~~~~~~~~~~g---~y~~~~~~~  103 (238)
                      ..|.|.+.|++++.......        +     ..|.+.+++..|+|   .|+|.+.|.
T Consensus        29 G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~   88 (111)
T d1biha2          29 AYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNA   88 (111)
T ss_dssp             EESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECT
T ss_pred             CCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeC
Confidence            46789999999876443221        0     13555556665555   477666653

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.92  E-value=0.002  Score=41.68  Aligned_cols=73  Identities=14%  Similarity=0.131  Sum_probs=42.4

Q ss_pred             CCceEEeCCCcEEEEEEEeee--CC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCC---CeEEEEEEEe
Q psy18191        138 PASAVVPRHEPTTLNCKADGY--PE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTD---SGVYWCVARN  211 (238)
Q Consensus       138 ~~~~~~~~G~~~~L~C~~~g~--P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d---~G~Y~C~a~N  211 (238)
                      |....+..++.+.|.|.+.|.  |. ..|+|++++........  .....+|.......+ .+..++   .-.|+|.+..
T Consensus        10 Ps~~~~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~~--~~~~~~gt~s~~S~L-~v~~~~W~~g~~ftC~V~H   86 (101)
T d1ow0a1          10 PALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGP--PERDLCGCYSVSSVL-PGCAEPWNHGKTFTCTAAY   86 (101)
T ss_dssp             CCHHHHHHCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEECC--CCCCSTTCCCEEEEC-TTTHHHHHHTCEEEEEECC
T ss_pred             CCHHHHccCCCeEEEEEEeCCCCCcceEEEEEECCceeeeecc--eEECCCCCEEEEEEE-EEcHHHcCCCCeEEEEEEe
Confidence            333334567899999999885  33 36999987753322111  112345554444333 234333   4589999986


Q ss_pred             CC
Q psy18191        212 EL  213 (238)
Q Consensus       212 ~~  213 (238)
                      ..
T Consensus        87 ~~   88 (101)
T d1ow0a1          87 PE   88 (101)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.42  E-value=0.15  Score=31.55  Aligned_cols=23  Identities=0%  Similarity=-0.064  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCCCCCceEEEeCCC
Q psy18191         81 MYLVGSQASPDYPNRFSLCNNKT  103 (238)
Q Consensus        81 ~~l~~~~~~~~~~g~y~~~~~~~  103 (238)
                      ..|.+.++.++|+|.|+|.+.|.
T Consensus        60 ~~L~I~~v~~~D~G~Y~C~a~N~   82 (96)
T d2c9aa1          60 ASFNVVNTTKRDAGKYRCMIRTE   82 (96)
T ss_dssp             EEEEECSCCGGGCSEEEEEEEET
T ss_pred             eEEEECCCCHHHCeEEEEEEEeC
Confidence            35888899999999999887764

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=85.88  E-value=0.29  Score=29.56  Aligned_cols=37  Identities=5%  Similarity=-0.071  Sum_probs=22.9

Q ss_pred             cEEEeccccccccceEEEEEcCCCCCCCCCceEEEeCC
Q psy18191         65 ICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNK  102 (238)
Q Consensus        65 ~~~w~~~~~~~~~~g~~~l~~~~~~~~~~g~y~~~~~~  102 (238)
                      .+.|++++..+.... ..+.+..+..+|+|.|.|.+.+
T Consensus        36 ~~~w~~~g~~~~~~~-~~l~i~~v~~~dsG~Y~C~a~n   72 (85)
T d2fcba1          36 SIQWFHNGNLIPTHT-QPSYRFKANNNDSGEYTCQTGQ   72 (85)
T ss_dssp             CCEEEETTEECTTCC-SSEEEEECCGGGCEEEEEECTT
T ss_pred             EEEeecccccccccc-cceEEeeccccCCcEEEEECCC
Confidence            577888887554322 1244556677777777765554

>d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.24  E-value=2.4  Score=26.43  Aligned_cols=39  Identities=23%  Similarity=0.271  Sum_probs=30.9

Q ss_pred             eCCCceEEeCCCcEEEEEEEee-------eCCCEEEEEeCCEEeec
Q psy18191        136 EHPASAVVPRHEPTTLNCKADG-------YPEPRIEWYKDGSLVSA  174 (238)
Q Consensus       136 ~~~~~~~~~~G~~~~L~C~~~g-------~P~p~i~W~~~g~~l~~  174 (238)
                      ..|.+..+..|++++..|...-       .-.+.+.|..++..++.
T Consensus         8 I~p~~Pvv~lGS~~TAsCtI~~~c~~~~~~~A~~I~Wkl~~~~~P~   53 (100)
T d1i1ra1           8 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPK   53 (100)
T ss_dssp             EESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCG
T ss_pred             EecCCCeEECCCCEEEEEEECchhcCccCCCcceEEEEECCEECCc
Confidence            3456778899999999999842       23468999999999885

>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.49  E-value=0.0093  Score=39.39  Aligned_cols=70  Identities=11%  Similarity=0.165  Sum_probs=37.9

Q ss_pred             EeCCCcEEEEEEEeee-CC---CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCC--C-eEEEEEEEeCC
Q psy18191        143 VPRHEPTTLNCKADGY-PE---PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTD--S-GVYWCVARNEL  213 (238)
Q Consensus       143 ~~~G~~~~L~C~~~g~-P~---p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d--~-G~Y~C~a~N~~  213 (238)
                      +..++.++|.|.+.|. |.   -.+.|++++..+............+|+......+. +..++  . -.|+|.+....
T Consensus        26 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~-v~~~~W~~g~~ytC~V~H~~  102 (116)
T d1igyb3          26 LLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALP-IMHQDWLNGKEFKCRVNSAA  102 (116)
T ss_dssp             HSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEE-CCHHHHHHTCCCBCCBCCSS
T ss_pred             cccCCCcEEEEEEecEeCCCCEEEEEECcCCeEcCCcEEcccEECCCCCEEEEEEEE-ECHHHhCCCCEEEEEEEeCC
Confidence            4568899999999885 43   24668888766543211111112233322211111 14432  3 47999987644