Psyllid ID: psy18207

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
MVDELHLKHEAGKDDKAWSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGVLLDLDRHLLRFFVNDEPQPNFYNISNRLVAHTVPDILLNDTENRQKAVKEFVIDRYDSDTDPSFGIARLDVARDEMLVAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKGAHYWEFVIDRYDSDTDPSFGIARLDVARDEMLVKHRDLFAVLATCSRYSRLVRGIPDLFAVFATCSRYSRLVRGIPDLFAGPIAFHNLYGVFYPAVSLNRGVTVTLHTGLEVPPEYVLQHIT
cccccccccccccccccEEEEEEccccEEEEccccccccccccEEEEEEEEEEcccccEEEEEEccccccccEEccccEEEEEEcccccccHHHHHHHHHHHHHcccccccccccccEEEEEEcccEEEEEEEEccccccccEEEEccccEEEEcccccEEEEEEccccccEEEEEEEEEEEccccccEEEEEcccccccccccccccEEEEEEccccccccccccccEEEEEEEcccccEEEEEEccEEEccEEEEcccccEEEEEEEccccEEEEEEcccccccEEccccc
cccHHEEEcccccccccEEEEEcccccEEEEcccccccccccEEcccEEEEEEEccccEEEEEEccccccccEccccEEEEEEcHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccEEEEEEEEEccccccccEEEEcccEEEEEcccccEEEEEcccccccEEEEEEEEEccccccccEEEEEEccccccHHcccccccEEEEEcccccccEccccccEEEEEEEcccccEEEEEEcccccccEEEcccccEEEEEEEEccccEEEEEccccccHHHHHHHcc
mvdelhlkheagkddkaWSMYIDKQRSWFMHASIHdqrteggisqgsTVGVLLDLDRHLLRffvndepqpnfynisnrlvahtvpdillndTENRQKAVKEFVIDrydsdtdpsfgiARLDVARDEMLVAWFtmdpgrsapdlffspehttvtcdgyEHRVALSVVGFSKGAHYWEFVIdrydsdtdpsfgiARLDVARDEMLVKHRDLFAVLATCSRYSRLVRGIPDLFAVFATCSRYSRlvrgipdlfagpiafhnlygvfypavslnrgvtvtlhtglevppeyvlqhit
mvdelhlkheagkddkawSMYIDKQRSWFMHASIHDQRteggisqgSTVGVLLDLDRHLLRFFVNDEPQPNFYNISNRLVAHTVPDILLNDTENRQKAVKEFvidrydsdtdpsFGIARLDVARDEMLVAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKGAHYWEFVIDRYDSDTDPSFGIARLDVARDEMLVKHRDLFAVLATCSRYSRLVRGIPDLFAVFATCSRYSRLVRGIPDLFAGPIAFHNLYGVFYPAVSLNRGVTVTLhtglevppeyvlqhit
MVDELHLKHEAGKDDKAWSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGvlldldrhllrffvNDEPQPNFYNISNRLVAHTVPDILLNDTENRQKAVKEFVIDRYDSDTDPSFGIARLDVARDEMLVAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKGAHYWEFVIDRYDSDTDPSFGIARLDVARDEMLVKHRDLFAVLATCSRYSRLVRGIPDLFAVFATCSRYSRLVRGIPDLFAGPIAFHNLYGVFYPAVSLNRGVTVTLHTGLEVPPEYVLQHIT
****************AWSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGVLLDLDRHLLRFFVNDEPQPNFYNISNRLVAHTVPDILLNDTENRQKAVKEFVIDRYDSDTDPSFGIARLDVARDEMLVAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKGAHYWEFVIDRYDSDTDPSFGIARLDVARDEMLVKHRDLFAVLATCSRYSRLVRGIPDLFAVFATCSRYSRLVRGIPDLFAGPIAFHNLYGVFYPAVSLNRGVTVTLHTGLEVPPEYVL****
****L**KHEAGKDDKAWSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGVLLDLDRHLLRFFVNDEPQPNFYNISNRLVAHTVPDILLNDTENR**************************VARDEMLVAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKGAHYWEFVIDRYDSDTDPSFGIARLDVARDEMLVKHRDLFAVLATCSRYSRLVRGIPDLFAVFATCSRYSRLVRGIPDLFAGPIAFHNLYGVFYPAVSLNRGVTVTLHTGLEVPPEYVLQHIT
MVDELHLKHEAGKDDKAWSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGVLLDLDRHLLRFFVNDEPQPNFYNISNRLVAHTVPDILLNDTENRQKAVKEFVIDRYDSDTDPSFGIARLDVARDEMLVAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKGAHYWEFVIDRYDSDTDPSFGIARLDVARDEMLVKHRDLFAVLATCSRYSRLVRGIPDLFAVFATCSRYSRLVRGIPDLFAGPIAFHNLYGVFYPAVSLNRGVTVTLHTGLEVPPEYVLQHIT
*VDELHLKHEAGKDDKAWSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGVLLDLDRHLLRFFVNDEPQPNFYNISNRLVAHTVPDILLNDTENRQKAVKEFVIDRYDSDTDPSFGIARLDVARDEMLVAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKGAHYWEFVIDRYDSDTDPSFGIARLDVARDEMLVKHRDLFAVLATCSRYSRLVRGIPDLFAVFATCSRYSRLVRGIPDLFAGPIAFHNLYGVFYPAVSLNRGVTVTLHTGLEVPPEYVLQHIT
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MVDELHLKHEAGKDDKAWSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGVLLDLDRHLLRFFVNDEPQPNFYNISNRLVAHTVPDILLNDTENRQKAVKEFVIDRYDSDTDPSFGIARLDVARDEMLVAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKGAHYWEFVIDRYDSDTDPSFGIARLDVARDEMLVKHRDLFAVLATCSRYSRLVRGIPDLFAVFATCSRYSRLVRGIPDLFAGPIAFHNLYGVFYPAVSLNRGVTVTLHTGLEVPPEYVLQHIT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query293 2.2.26 [Sep-21-2011]
Q29RQ5710 E3 ubiquitin-protein liga yes N/A 0.532 0.219 0.457 5e-33
Q91ZY8710 E3 ubiquitin-protein liga yes N/A 0.539 0.222 0.458 3e-32
Q9C026710 E3 ubiquitin-protein liga yes N/A 0.529 0.218 0.461 1e-31
Q8C7M3817 E3 ubiquitin-protein liga no N/A 0.511 0.183 0.432 5e-28
Q6ZTA4783 Tripartite motif-containi no N/A 0.532 0.199 0.415 4e-27
Q505D9768 Tripartite motif-containi no N/A 0.532 0.203 0.415 4e-27
>sp|Q29RQ5|TRIM9_BOVIN E3 ubiquitin-protein ligase TRIM9 OS=Bos taurus GN=TRIM9 PE=2 SV=1 Back     alignment and function desciption
 Score =  141 bits (356), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 98/166 (59%), Gaps = 10/166 (6%)

Query: 129 VAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKGAHYWEFVIDRYDSDTDP 188
           VAWF  DPG +  D+ FS ++ TVTC  Y+ RV L   GFSKG HYWE  +DRYD+  DP
Sbjct: 535 VAWFAFDPGSAHSDIIFSNDNLTVTCSSYDDRVVLGKTGFSKGVHYWELTVDRYDNHPDP 594

Query: 189 SFGIARLDVARDEMLVKHRDLFAVLATCSR--------YSRLVRGIPDLFAVFATCSRYS 240
           +FG+AR+DV +D ML K    +A+    +R        ++    G     A       ++
Sbjct: 595 AFGVARIDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDFN 654

Query: 241 R--LVRGIPDLFAGPIAFHNLYGVFYPAVSLNRGVTVTLHTGLEVP 284
           R  L   I D   GPIAF N+ G+F+PAVSLNR V VTLHTGL+VP
Sbjct: 655 RKTLTFFINDEQQGPIAFENVEGLFFPAVSLNRNVQVTLHTGLQVP 700
E3 ubiquitin-protein ligase which ubiquitinates itself in cooperation with an E2 enzyme UBE2D2/UBC4 and serves as a targeting signal for proteasomal degradation. May play a role in regulation of neuronal functions. May act as a regulator of synaptic vesicle exocytosis by controlling the availability of SNAP25 for the SNARE complex formation.
Bos taurus (taxid: 9913)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q91ZY8|TRIM9_RAT E3 ubiquitin-protein ligase TRIM9 OS=Rattus norvegicus GN=Trim9 PE=1 SV=1 Back     alignment and function description
>sp|Q9C026|TRIM9_HUMAN E3 ubiquitin-protein ligase TRIM9 OS=Homo sapiens GN=TRIM9 PE=1 SV=1 Back     alignment and function description
>sp|Q8C7M3|TRIM9_MOUSE E3 ubiquitin-protein ligase TRIM9 OS=Mus musculus GN=Trim9 PE=1 SV=2 Back     alignment and function description
>sp|Q6ZTA4|TRI67_HUMAN Tripartite motif-containing protein 67 OS=Homo sapiens GN=TRIM67 PE=2 SV=3 Back     alignment and function description
>sp|Q505D9|TRI67_MOUSE Tripartite motif-containing protein 67 OS=Mus musculus GN=Trim67 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query293
328724985177 PREDICTED: e3 ubiquitin-protein ligase T 0.535 0.887 0.497 1e-38
242014358 696 tripartite motif-containing protein, put 0.529 0.222 0.491 1e-36
312377300 1036 hypothetical protein AND_11438 [Anophele 0.539 0.152 0.486 5e-35
118785752 430 AGAP008750-PA [Anopheles gambiae str. PE 0.522 0.355 0.5 1e-34
195117506 437 GI23370 [Drosophila mojavensis] gi|19391 0.522 0.350 0.482 4e-34
195161571318 GL26617 [Drosophila persimilis] gi|19410 0.525 0.484 0.473 4e-34
194862221 431 GG23655 [Drosophila erecta] gi|190661818 0.522 0.354 0.476 5e-34
194762016 469 GF15809 [Drosophila ananassae] gi|190616 0.522 0.326 0.482 5e-34
195578267 600 GD23717 [Drosophila simulans] gi|1941909 0.522 0.255 0.476 6e-34
195471912 460 GE18473 [Drosophila yakuba] gi|194174347 0.522 0.332 0.476 9e-34
>gi|328724985|ref|XP_003248308.1| PREDICTED: e3 ubiquitin-protein ligase TRIM9-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/169 (49%), Positives = 113/169 (66%), Gaps = 12/169 (7%)

Query: 129 VAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKGAHYWEFVIDRYDSDTDP 188
           VAWFT DP  S+P+L F+P++ TVTC+G+EHRVAL  VGFS+G HYWEF IDRYD+DTDP
Sbjct: 6   VAWFTFDPCLSSPELCFTPDNMTVTCEGFEHRVALGSVGFSRGVHYWEFTIDRYDADTDP 65

Query: 189 SFGIARLDVARDEMLVKHRDLFAV--------LATCSRYSRLVRG---IPDLFAVFATCS 237
           SFG+ARLDV+++EML K    +++           C  + +   G   +     V    +
Sbjct: 66  SFGVARLDVSKEEMLGKDESGWSMYIDKQRSWFMHCRSHEQRCEGGIQVGSTVGVLLDLN 125

Query: 238 RYSRLVRGIPDLFAGPIAFHNLYGVFYPAVSLNRGVTVTLHTGLEVPPE 286
           ++ +L   + D   GP+AF+ LYGVFYPAVS+NRGV VTLHT L+ P +
Sbjct: 126 KH-QLSFFVNDEPQGPVAFNGLYGVFYPAVSVNRGVAVTLHTALDAPSD 173

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242014358|ref|XP_002427858.1| tripartite motif-containing protein, putative [Pediculus humanus corporis] gi|212512327|gb|EEB15120.1| tripartite motif-containing protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|312377300|gb|EFR24162.1| hypothetical protein AND_11438 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|118785752|ref|XP_314868.3| AGAP008750-PA [Anopheles gambiae str. PEST] gi|116127885|gb|EAA10115.3| AGAP008750-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|195117506|ref|XP_002003288.1| GI23370 [Drosophila mojavensis] gi|193913863|gb|EDW12730.1| GI23370 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|195161571|ref|XP_002021636.1| GL26617 [Drosophila persimilis] gi|194103436|gb|EDW25479.1| GL26617 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|194862221|ref|XP_001969951.1| GG23655 [Drosophila erecta] gi|190661818|gb|EDV59010.1| GG23655 [Drosophila erecta] Back     alignment and taxonomy information
>gi|194762016|ref|XP_001963158.1| GF15809 [Drosophila ananassae] gi|190616855|gb|EDV32379.1| GF15809 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|195578267|ref|XP_002078987.1| GD23717 [Drosophila simulans] gi|194190996|gb|EDX04572.1| GD23717 [Drosophila simulans] Back     alignment and taxonomy information
>gi|195471912|ref|XP_002088246.1| GE18473 [Drosophila yakuba] gi|194174347|gb|EDW87958.1| GE18473 [Drosophila yakuba] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query293
UNIPROTKB|F1N068788 TRIM9 "E3 ubiquitin-protein li 0.522 0.194 0.472 1.1e-33
FB|FBgn0051721729 Trim9 "Trim9" [Drosophila mela 0.522 0.209 0.476 2.4e-33
UNIPROTKB|Q29RQ5710 TRIM9 "E3 ubiquitin-protein li 0.542 0.223 0.455 2.8e-33
UNIPROTKB|E2RKC8795 TRIM9 "Uncharacterized protein 0.546 0.201 0.459 1.1e-32
UNIPROTKB|F1SFF7710 TRIM9 "Uncharacterized protein 0.539 0.222 0.458 1.3e-32
UNIPROTKB|I3LLR6808 TRIM9 "Uncharacterized protein 0.546 0.198 0.453 2e-32
RGD|621540710 Trim9 "tripartite motif-contai 0.539 0.222 0.458 2.7e-32
UNIPROTKB|Q91ZY8710 Trim9 "E3 ubiquitin-protein li 0.539 0.222 0.458 2.7e-32
UNIPROTKB|Q9C026710 TRIM9 "E3 ubiquitin-protein li 0.539 0.222 0.458 4.5e-32
ZFIN|ZDB-GENE-030131-8043699 trim9 "tripartite motif-contai 0.515 0.216 0.446 4.7e-29
UNIPROTKB|F1N068 TRIM9 "E3 ubiquitin-protein ligase TRIM9" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 363 (132.8 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
 Identities = 76/161 (47%), Positives = 98/161 (60%)

Query:   127 MLVAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKGAHYWEFVIDRYDSDT 186
             + VAWF  DPG +  D+ FS ++ TVTC  Y+ RV L   GFSKG HYWE  +DRYD+  
Sbjct:   629 LAVAWFAFDPGSAHSDIIFSNDNLTVTCSSYDDRVVLGKTGFSKGVHYWELTVDRYDNHP 688

Query:   187 DPSFGIARLDVARDEMLVKHRDLFAVLATCSRYSRLVRGIPDLFAVFATCSRYSRLVRGI 246
             DP+FG+AR+DV +D ML K    +A+         + +G      V    +R + L   I
Sbjct:   689 DPAFGVARIDVMKDVMLGKDDKAWAITE-----GGITKGAT--IGVLLDFNRKT-LTFFI 740

Query:   247 PDLFAGPIAFHNLYGVFYPAVSLNRGVTVTLHTGLEVPPEY 287
              D   GPIAF N+ G+F+PAVSLNR V VTLHTGL+VP  Y
Sbjct:   741 NDEQQGPIAFENVEGLFFPAVSLNRNVQVTLHTGLQVPDFY 781
GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0042803 "protein homodimerization activity" evidence=IEA
GO:0030425 "dendrite" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
FB|FBgn0051721 Trim9 "Trim9" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q29RQ5 TRIM9 "E3 ubiquitin-protein ligase TRIM9" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RKC8 TRIM9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SFF7 TRIM9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LLR6 TRIM9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|621540 Trim9 "tripartite motif-containing 9" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q91ZY8 Trim9 "E3 ubiquitin-protein ligase TRIM9" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9C026 TRIM9 "E3 ubiquitin-protein ligase TRIM9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8043 trim9 "tripartite motif-containing 9" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query293
cd12889172 cd12889, SPRY_PRY_TRIM67_9, PRY/SPRY domain in tri 4e-52
cd12889172 cd12889, SPRY_PRY_TRIM67_9, PRY/SPRY domain in tri 2e-31
cd12889172 cd12889, SPRY_PRY_TRIM67_9, PRY/SPRY domain in tri 9e-09
cd13734169 cd13734, SPRY_PRY_C-I, PRY/SPRY domain in triparti 4e-07
cd13734169 cd13734, SPRY_PRY_C-I, PRY/SPRY domain in triparti 1e-06
cd11709118 cd11709, SPRY, SPRY domain 7e-05
cd12897186 cd12897, SPRY_PRY_TRIM50_62_72, PRY/SPRY domain in 2e-04
cd13733176 cd13733, SPRY_PRY_C-IV_1, PRY/SPRY domain in tripa 0.004
>gnl|CDD|240469 cd12889, SPRY_PRY_TRIM67_9, PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67 Back     alignment and domain information 
 Score =  168 bits (427), Expect = 4e-52
 Identities = 79/169 (46%), Positives = 96/169 (56%), Gaps = 16/169 (9%)

Query: 129 VAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKGAHYWEFVIDRYDSDTDP 188
           VAWF  DP    PD+  S ++ TVTC  YE RV L  VGFS+G HYWE  IDRYD   DP
Sbjct: 7   VAWFQFDPSSGHPDIILSNDNLTVTCSSYEDRVVLGSVGFSRGVHYWEVTIDRYDGHPDP 66

Query: 189 SFGIARLDVARDEMLVKHRDLFAVLATCSR--------YSRLVRG---IPDLFAVFATCS 237
           +FG+AR DVA+D+ML K    +A+    +R        +S    G   +  +  V     
Sbjct: 67  AFGVARADVAKDKMLGKDDKGWAMYIDSNRSWFLHNNEHSNRTEGGITVGSVIGVLLDLD 126

Query: 238 R--YSRLVRGIPDLFAGPIAFHNLYGVFYPAVSLNRGVTVTLHTGLEVP 284
           R   S  V   P    GP+AF NL G+FYPA SLNR V VTLHTGLE+P
Sbjct: 127 RGTLSFYVNDEPQ---GPVAFTNLPGLFYPAFSLNRNVQVTLHTGLEIP 172

This domain, consisting of the distinct N-terminal PRY subdomain followed by the SPRY subdomain, is found at the C-terminus of TRIM9 proteins. TRIM9 protein is expressed mainly in the cerebral cortex, and functions as an E3 ubiquitin ligase. It has been shown that TRIM9 is localized to the neurons in the normal human brain and its immunoreactivity in affected brain areas in Parkinson's disease and dementia with Lewy bodies is severely decreased, possibly playing an important role in the regulation of neuronal function and participating in pathological process of Lewy body disease through its ligase. TRIM67 negatively regulates Ras activity via degradation of 80K-H , leading to neural differentiation, including neuritogenesis. Length = 172
>gnl|CDD|240469 cd12889, SPRY_PRY_TRIM67_9, PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67 Back     alignment and domain information
>gnl|CDD|240469 cd12889, SPRY_PRY_TRIM67_9, PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67 Back     alignment and domain information
>gnl|CDD|240492 cd13734, SPRY_PRY_C-I, PRY/SPRY domain in tripartite motif-containing proteins 1, 9, 18, 36, 46, 67,76 (TRIM1, TRIM9, TRIM18, TRIM36, TRIM46, TRIM67, TRIM76) Back     alignment and domain information
>gnl|CDD|240492 cd13734, SPRY_PRY_C-I, PRY/SPRY domain in tripartite motif-containing proteins 1, 9, 18, 36, 46, 67,76 (TRIM1, TRIM9, TRIM18, TRIM36, TRIM46, TRIM67, TRIM76) Back     alignment and domain information
>gnl|CDD|240451 cd11709, SPRY, SPRY domain Back     alignment and domain information
>gnl|CDD|240477 cd12897, SPRY_PRY_TRIM50_62_72, PRY/SPRY domain in tripartite motif-binding (TRIM) proteins TRIM50, TRIM62 and TRIM72 Back     alignment and domain information
>gnl|CDD|240491 cd13733, SPRY_PRY_C-IV_1, PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM7, TRIM35, TRIM41, TRIM50, TRIM62, TRIM69, TRIM72, NF7 and bloodthirsty (bty) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 293
KOG4367|consensus699 99.96
KOG4367|consensus699 99.85
smart00449122 SPRY Domain in SPla and the RYanodine Receptor. Do 99.84
PF00622124 SPRY: SPRY domain; InterPro: IPR003877 The SPRY do 99.78
KOG3953|consensus242 99.43
KOG4030|consensus197 98.94
KOG2626|consensus544 98.86
smart00449122 SPRY Domain in SPla and the RYanodine Receptor. Do 98.84
KOG0349|consensus 725 98.71
PF1376549 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2V 98.63
PF00622124 SPRY: SPRY domain; InterPro: IPR003877 The SPRY do 98.56
smart0058952 PRY associated with SPRY domains. 98.05
KOG3953|consensus242 97.87
KOG4030|consensus197 97.79
KOG2243|consensus 5019 97.11
KOG2177|consensus386 96.68
PF0717769 Neuralized: Neuralized; InterPro: IPR006573 NEUZ i 82.25
>KOG4367|consensus Back     alignment and domain information 
Probab=99.96  E-value=1.2e-28  Score=233.17  Aligned_cols=170  Identities=32%  Similarity=0.563  Sum_probs=155.5

Q ss_pred             CchhhHHHHHhhcceeeeEeCCCCCCCCeEEeCCCcEEEEcccCceeEEeeeccCcCeEEEEEEEeeeCCCCCeEEEEEe
Q psy18207        115 FGIARLDVARDEMLVAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKGAHYWEFVIDRYDSDTDPSFGIAR  194 (293)
Q Consensus       115 ~~~~~~~~~l~~~~~~~~tlDp~ta~~~L~lS~d~~tv~~~~~~~~~VLg~~~fssGrHYWEVeV~~~~~~~~w~vGVa~  194 (293)
                      ++|+. ..+|++.+++||.|+|..++..++||+++.+++..+.+++.|||+.+|+.|.|||||.+++.++..+..+|||.
T Consensus       519 s~ys~-tl~lqts~vawfqlt~spsqrdmilsnecatlsgssleyrtilgsiafskgvhywevtidrhdgnsdivigvaq  597 (699)
T KOG4367|consen  519 SPYSK-TLVLQTSEVAWFQLTPSPSQRDMILSNECATLSGSSLEYRTILGSIAFSKGVHYWEVTIDRHDGNSDIVIGVAQ  597 (699)
T ss_pred             Ccccc-eeEeeecceeeeeccCCchhhceeeecccceecccccchheeeeecccccceeEEEEEEeccCCCCCceEEecc
Confidence            45555 56789999999999999999999999999999999889999999999999999999999999888999999999


Q ss_pred             ccccccccccCCCcEEEEEEcCCc---------CccccCCCCCe--EEEEEeCCCCCEEEEEeeCCCCCceEEcCCCCcE
Q psy18207        195 LDVARDEMLVKHRDLFAVLATCSR---------YSRLVRGIPDL--FAVFATCSRYSRLVRGIPDLFAGPIAFHNLYGVF  263 (293)
Q Consensus       195 ~s~~r~~~lg~~~~sW~l~~~~~~---------~~~~~~~~~~~--IGV~LD~e~~G~LSFY~n~~~~g~~tF~~f~g~l  263 (293)
                      ..++|+..+|.+...|++|.++.+         +++..+++..+  |||.|||++ |++.|+.|+...+.++|++..|-+
T Consensus       598 pavnrnvmlgkdlhgwsmyvdgerswylhnethhnrvlggvtrgtvigvrldcdr-gtmeytvndrqddsmaftnmrgly  676 (699)
T KOG4367|consen  598 PAVNRNVMLGKDLHGWSMYVDGERSWYLHNETHHNRVLGGVTRGTVIGVRLDCDR-GTMEYTVNDRQDDSMAFTNMRGLY  676 (699)
T ss_pred             hhhhhceeecccccceeEEEcCcceeEEeccccccccccccccccEEEEEEeccC-CceEEEeccccCCceeeeccccee
Confidence            999999999999999999998876         55666677666  999999999 999999988777779999999999


Q ss_pred             EEEEEcCCCCeEEEEcCCCCChh
Q psy18207        264 YPAVSLNRGVTVTLHTGLEVPPE  286 (293)
Q Consensus       264 yP~Fsl~~g~~ltL~~g~~~P~~  286 (293)
                      ||||+++...+||+++|++.|+.
T Consensus       677 ypafsvnanssitvhtglsspss  699 (699)
T KOG4367|consen  677 YPAFSVNANSSITVHTGLSSPSS  699 (699)
T ss_pred             eeeeEeccCceEEEecCCCCCCC
Confidence            99999999999999999999973

>KOG4367|consensus Back     alignment and domain information
>smart00449 SPRY Domain in SPla and the RYanodine Receptor Back     alignment and domain information
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function Back     alignment and domain information
>KOG3953|consensus Back     alignment and domain information
>KOG4030|consensus Back     alignment and domain information
>KOG2626|consensus Back     alignment and domain information
>smart00449 SPRY Domain in SPla and the RYanodine Receptor Back     alignment and domain information
>KOG0349|consensus Back     alignment and domain information
>PF13765 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2VOL_B 2FBE_B 2WL1_A 2IWG_E Back     alignment and domain information
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function Back     alignment and domain information
>smart00589 PRY associated with SPRY domains Back     alignment and domain information
>KOG3953|consensus Back     alignment and domain information
>KOG4030|consensus Back     alignment and domain information
>KOG2243|consensus Back     alignment and domain information
>KOG2177|consensus Back     alignment and domain information
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query293
3toj_A213 SET1/ASH2 histone methyltransferase complex subun; 5e-12
2jk9_A212 SPRY domain-containing SOCS box protein 1; transcr 5e-11
2jk9_A212 SPRY domain-containing SOCS box protein 1; transcr 5e-07
3emw_A217 SPRY domain-containing SOCS box protein 2; apoptos 2e-07
3emw_A217 SPRY domain-containing SOCS box protein 2; apoptos 1e-05
2afj_A226 Gene rich cluster, C9 gene; beta sandwich, gene re 3e-07
2afj_A226 Gene rich cluster, C9 gene; beta sandwich, gene re 5e-06
2yyo_A171 SPRY domain-containing protein 3; NPPSFA, national 8e-06
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens} Length = 213 Back     alignment and structure
 Score = 63.0 bits (153), Expect = 5e-12
 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 16/164 (9%)

Query: 132 FTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKGAHYWEFVIDRYDSDTDPSFG 191
             +     AP L  S +  TV  +   + +  +  G  KGA Y+E  +D    DT    G
Sbjct: 13  VLLALHDRAPQLKISDDRLTVVGEK-GYSMVRASHGVRKGAWYFEITVDEMPPDTAARLG 71

Query: 192 IARLDVARDEMLVKHRDLFAVLATCSRYSRLVRGIP--------DLFAVFATCSRYSRLV 243
            ++        L   +  ++  +          G          D+   +      +   
Sbjct: 72  WSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTISG 131

Query: 244 RGIPDLFA------GPIAFHNLY-GVFYPAVSLNRGVTVTLHTG 280
           RG  ++          +A+ +++ GV++PA+SL +  TV+++ G
Sbjct: 132 RGSSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTVSINFG 175
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A Length = 212 Back     alignment and structure
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A Length = 212 Back     alignment and structure
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A Length = 217 Back     alignment and structure
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A Length = 217 Back     alignment and structure
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22 Length = 226 Back     alignment and structure
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22 Length = 226 Back     alignment and structure
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} Length = 171 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query293
3uv9_A186 TRIM5alpha, tripartite motif-containing protein 5; 100.0
3kb5_A193 Tripartite motif-containing protein 72; B30.2, gus 100.0
2vok_A188 52 kDa RO protein; polymorphism, immune system, me 100.0
2wl1_A191 Pyrin, marenostrin; amyloidosis, polymorphism, cyt 100.0
2fbe_A201 Predicted: similar to RET finger protein-like 1; d 100.0
4b3n_A602 Maltose-binding periplasmic protein, tripartite mo 100.0
2afj_A226 Gene rich cluster, C9 gene; beta sandwich, gene re 99.97
3emw_A217 SPRY domain-containing SOCS box protein 2; apoptos 99.97
2jk9_A212 SPRY domain-containing SOCS box protein 1; transcr 99.97
3toj_A213 SET1/ASH2 histone methyltransferase complex subun; 99.91
2yyo_A171 SPRY domain-containing protein 3; NPPSFA, national 99.71
3emw_A217 SPRY domain-containing SOCS box protein 2; apoptos 99.1
2vok_A188 52 kDa RO protein; polymorphism, immune system, me 98.83
2jk9_A212 SPRY domain-containing SOCS box protein 1; transcr 98.78
2afj_A226 Gene rich cluster, C9 gene; beta sandwich, gene re 98.75
3uv9_A186 TRIM5alpha, tripartite motif-containing protein 5; 98.72
2wl1_A191 Pyrin, marenostrin; amyloidosis, polymorphism, cyt 98.68
2fbe_A201 Predicted: similar to RET finger protein-like 1; d 98.61
3toj_A213 SET1/ASH2 histone methyltransferase complex subun; 98.54
3kb5_A193 Tripartite motif-containing protein 72; B30.2, gus 98.5
2yyo_A171 SPRY domain-containing protein 3; NPPSFA, national 98.06
4b3n_A602 Maltose-binding periplasmic protein, tripartite mo 98.0
2e63_A170 KIAA1787 protein; structure genomics, neuralized d 97.61
2yue_A168 Protein neuralized; structure genomics, NEUZ(NHR) 96.24
2e63_A170 KIAA1787 protein; structure genomics, neuralized d 91.79
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta} Back     alignment and structure
Probab=100.00  E-value=4.2e-38  Score=274.46  Aligned_cols=153  Identities=15%  Similarity=0.142  Sum_probs=118.8

Q ss_pred             hHHHHHhhcceeeeEeCCCCCCCCeEEeCCCcEEEEcccCceeEEeeeccCcCeEEEEEEEeeeCCCCCeEEEEEecccc
Q psy18207        119 RLDVARDEMLVAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKGAHYWEFVIDRYDSDTDPSFGIARLDVA  198 (293)
Q Consensus       119 ~~~~~l~~~~~~~~tlDp~ta~~~L~lS~d~~tv~~~~~~~~~VLg~~~fssGrHYWEVeV~~~~~~~~w~vGVa~~s~~  198 (293)
                      .+.++.+..  ..+||||+|||+ |+||+|+|+|++..  ..+|||+++|++|||||||||+   +++.|.||||++++.
T Consensus         3 el~~~~~y~--v~vTLDp~TA~~-l~lSed~r~Vr~~~--~~~VLG~~~ftsGrHYWEVeV~---~~~~W~vGV~~~~~~   74 (186)
T 3uv9_A            3 ELTDARRYW--VDVTLATNNISH-AVIAEDKRQVSSRA--GTGVLGSQSITSGKHYWEVDVS---KKSAWILGVCAGFQS   74 (186)
T ss_dssp             HHHHHGGGC--CCCCCCCCSSCC-CEECTTSSCEECCC--SSCEECSSCBCSSEEEEEEECT---TCSCEEEEEESCSTT
T ss_pred             hHhhhheeE--EEeEeCCCCcCC-ceECCCCCEEeecC--CCcCcCCCCCCCCCEEEEEEEc---CCCcEEEEEEEEEec
Confidence            345554443  578999999996 99999999998763  4689999999999999999997   567899999999887


Q ss_pred             cc-------ccccCCCcEEEEEEcCC-c----Cccc----------cC---CCCCeEEEEEeCCCCCEEEEEeeCCCCC-
Q psy18207        199 RD-------EMLVKHRDLFAVLATCS-R----YSRL----------VR---GIPDLFAVFATCSRYSRLVRGIPDLFAG-  252 (293)
Q Consensus       199 r~-------~~lg~~~~sW~l~~~~~-~----~~~~----------~~---~~~~~IGV~LD~e~~G~LSFY~n~~~~g-  252 (293)
                      |+       ..+++++++|++++... .    ++..          ..   ..|.+||||||||+ |+|||| |..+.+ 
T Consensus        75 r~~~~~~~~~~~~~~~g~W~l~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~p~rVGVfLDye~-G~lSFY-nv~d~~~  152 (186)
T 3uv9_A           75 DAMYNIEQNENYQPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEA-CTVSFF-NITNHGF  152 (186)
T ss_dssp             TTTTTHHHHTCCCGGGTEEEEEEETTTEEEEEECCCTTSTTSCEEEECCCSSCCSEEEEEEETTT-TEEEEE-ETTTTTE
T ss_pred             ccccccCCCcccCCCCCEEEEEECCCCEEEEEeCCCccccCCCccCcccccccCCEEEEEeecCC-CEEEEE-eCCCCce
Confidence            74       35788999999986432 2    1110          00   12345999999999 999999 655433 


Q ss_pred             -ceEEc--CCCCcEEEEEEcCCC-CeEEEEcCC
Q psy18207        253 -PIAFH--NLYGVFYPAVSLNRG-VTVTLHTGL  281 (293)
Q Consensus       253 -~~tF~--~f~g~lyP~Fsl~~g-~~ltL~~g~  281 (293)
                       +++|+  .|++||||+|+++.+ .+|+||+..
T Consensus       153 lI~tF~~~~Fs~pL~P~F~~~~~~~plticpp~  185 (186)
T 3uv9_A          153 LIYKFSQCSFSKPVFPYLNPRKCTVPMTLCSPS  185 (186)
T ss_dssp             EEEEECSCCCSSCBEEEEECTTCCSCCEECCC-
T ss_pred             EEEEeCCcCCCCCEEeEEECCCCCceEEEeCCC
Confidence             45995  599999999999764 789999753
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens} Back     alignment and structure
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B* Back     alignment and structure
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens} Back     alignment and structure
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22 Back     alignment and structure
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A Back     alignment and structure
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22 Back     alignment and structure
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A Back     alignment and structure
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A Back     alignment and structure
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens} Back     alignment and structure
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} Back     alignment and structure
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A Back     alignment and structure
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B* Back     alignment and structure
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A Back     alignment and structure
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22 Back     alignment and structure
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta} Back     alignment and structure
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens} Back     alignment and structure
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22 Back     alignment and structure
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens} Back     alignment and structure
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens} Back     alignment and structure
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} Back     alignment and structure
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A Back     alignment and structure
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster} Back     alignment and structure
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 293
d2afja1213 b.29.1.22 (A:12-224) SPRY domain-containing SOCS b 6e-08
d2fnja1217 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophi 3e-06
d2fbea1188 b.29.1.22 (A:1-188) Similar to Ret finger protein- 0.004
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 213 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: SPRY domain-containing SOCS box protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.9 bits (118), Expect = 6e-08
 Identities = 23/163 (14%), Positives = 41/163 (25%), Gaps = 22/163 (13%)

Query: 132 FTMDPGRSAPDLFFSPEHTTVTCDGYEH--RVALSVVGFSKGAHYWEFVIDRYDSDTDPS 189
              +P   + ++                         G+S+G H WE         T   
Sbjct: 35  HGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHAV 94

Query: 190 FGIARLDVARDE-----MLVKHRDLFAVLATCSRYSRLVRGIPDL---FAVFATCSRYSR 241
            G+A             +L  + + +       +     +G+                  
Sbjct: 95  VGVATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPE 154

Query: 242 LVRGIPDLFAG-----------PIAFHNLYGV-FYPAVSLNRG 272
            +  + D+  G             AF  L G   YP+VS   G
Sbjct: 155 RLLVVLDMEEGTLGYSIGGTYLGPAFRGLKGRTLYPSVSAVWG 197
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217 Back     information, alignment and structure
>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query293
d2iwgb1179 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 96 100.0
d2fbea1188 Similar to Ret finger protein-like 1 {Human (Homo 100.0
d2fnja1217 LD34464p {Fruit fly (Drosophila melanogaster) [Tax 99.89
d2afja1213 SPRY domain-containing SOCS box protein 2 {Mouse ( 99.85
d2fnja1217 LD34464p {Fruit fly (Drosophila melanogaster) [Tax 98.84
d2iwgb1179 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 96 98.71
d2fbea1188 Similar to Ret finger protein-like 1 {Human (Homo 98.6
d2afja1213 SPRY domain-containing SOCS box protein 2 {Mouse ( 98.53
>d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: 52 kDa Ro protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-37  Score=263.16  Aligned_cols=144  Identities=19%  Similarity=0.246  Sum_probs=114.4

Q ss_pred             eeEeCCCCCCCCeEEeCCCcEEEEccc------------CceeEEeeeccCcCeEEEEEEEeeeCCCCCeEEEEEecccc
Q psy18207        131 WFTMDPGRSAPDLFFSPEHTTVTCDGY------------EHRVALSVVGFSKGAHYWEFVIDRYDSDTDPSFGIARLDVA  198 (293)
Q Consensus       131 ~~tlDp~ta~~~L~lS~d~~tv~~~~~------------~~~~VLg~~~fssGrHYWEVeV~~~~~~~~w~vGVa~~s~~  198 (293)
                      ++||||+||||+|.||+|+|+|++...            .+.+|||+++|++|||||||||+   ++..|.||||+++++
T Consensus         2 ~lTLDp~TAh~~L~lS~d~~~V~~~~~~~~~p~~p~RF~~~~~VLg~~~f~sG~HYWEVeV~---~~~~w~vGV~~~s~~   78 (179)
T d2iwgb1           2 HITLDPDTANPWLILSEDRRQVRLGDTQQSIPGNEERFDSYPMVLGAQHFHSGKHYWEVDVT---GKEAWDLGVCRDSVR   78 (179)
T ss_dssp             CCCBCTTTCCTTEEECTTSCEEEECSSCCCCCCCTTSCCSSSCEEBSCCBSSSEEEEEEECT---TCSCEEEEEEETTCC
T ss_pred             eeEECCCcCCCCEEEcCCCCEEEECCcCcCCCCCcccccccccccccccccCCCEEEEEEEe---eCCeEEEEEEcCccC
Confidence            579999999999999999999998542            13589999999999999999997   566899999999999


Q ss_pred             cccc--ccCCCcEEEEEEcCCc----Ccc--cc---CCCCCeEEEEEeCCCCCEEEEEeeCC-CCC-ceEEc--CCCCcE
Q psy18207        199 RDEM--LVKHRDLFAVLATCSR----YSR--LV---RGIPDLFAVFATCSRYSRLVRGIPDL-FAG-PIAFH--NLYGVF  263 (293)
Q Consensus       199 r~~~--lg~~~~sW~l~~~~~~----~~~--~~---~~~~~~IGV~LD~e~~G~LSFY~n~~-~~g-~~tF~--~f~g~l  263 (293)
                      |+..  +++++++|++++...+    +..  ..   ...+.+||||||||+ |+|||| |.. ... +++|+  .|++||
T Consensus        79 Rk~~~~~~~~~~~W~l~~~~~~~~~~~~~~~~~l~~~~~~~riGV~LD~e~-G~lsFy-~v~~~~~li~tf~~~~F~~pl  156 (179)
T d2iwgb1          79 RKGHFLLSSKSGFWTIWLWNKQKYEAGTYPQTPLHLQVPPCQVGIFLDYEA-GMVSFY-NITDHGSLIYSFSECAFTGPL  156 (179)
T ss_dssp             CSSCCCCCTTTTEEEEEEETTTEEEECCSSCEEECCSSCCSEEEEEEETTT-TEEEEE-ETTTTTEEEEEECCCCCCSCE
T ss_pred             cCcccccCCCCCEEEEEEeCCceEEEecCCCEeEccccCccEEEEEEecCC-CEEEEE-eCCCCCeEEEEeCCcCCCCCe
Confidence            9864  6788999999874432    111  11   112335999999999 999999 643 333 45995  599999


Q ss_pred             EEEEEcCC------CCeEEEEc
Q psy18207        264 YPAVSLNR------GVTVTLHT  279 (293)
Q Consensus       264 yP~Fsl~~------g~~ltL~~  279 (293)
                      ||+|+++.      ..+++||+
T Consensus       157 ~P~F~~~~~~~~~~~~pl~icp  178 (179)
T d2iwgb1         157 RPFFSPGFNDGGKNTAPLTLCP  178 (179)
T ss_dssp             EEEEECCCCTTSCCCCCEEECC
T ss_pred             ECeEECccCCCCcCCCCeEeCC
Confidence            99999853      36799985
>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure