Psyllid ID: psy18227


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
NWLDNLFCLGSPLAVFLALRVPRGHHGNHLFPPSLCSRLYNVFHPSDPIAYRLEPLVMKNYFRIAPVSIHSYNASSKPLYCDMPLEFIIPSPSPSETSPPPLLENPPPPQEKSWKKWSLSFVKPAVGPGSKSNAQTQPESPYEGLEHRLDYALKDTYGGTTRGYLSAMTSHTAYWNNYDCAYFILTRLFPTLELSSTPPDSSAYLPDFSLY
cccccEEEEccHHHHHHHHccccccccccccccccccccEEcccccccccccHHHHHcccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccccccc
ccHHHEEEcccHHHHHHHHHccccccccccccccccccEEEEccccccHHHHHHHHHcHHHccccccEccccccccccccHHccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHccccccEEEEEEcccccccccEEEccHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccc
nwldnlfclgSPLAVFLAlrvprghhgnhlfppslcsrlynvfhpsdpiayrleplvmknyfriapvsihsynasskplycdmplefiipspspsetspppllenppppqekswkkwslsfvkpavgpgsksnaqtqpespyeglEHRLDYALkdtyggttrGYLSAMTSHTAYWNNYDCAYFILTrlfptlelsstppdssaylpdfsly
NWLDNLFCLGSPLAVFLALRVPRGHHGNHLFPPSLCSRLYNVFHPSDPIAYRLEPLVMKNYFRIAPVSIHSYNASSKPLYCDMPLEFIIPSPSPSETSPPPLLENPPPPQEKSWKKWSLSFVKPAvgpgsksnaqtqpespyEGLEHRLDYALKDTYGGTTRGYLSAMTSHTAYWNNYDCAYFILTRLFPTlelsstppdssaylpdfsly
NWLDNLFCLGSPLAVFLALRVPRGHHGNHLFPPSLCSRLYNVFHPSDPIAYRLEPLVMKNYFRIAPVSIHSYNASSKPLYCDMplefiipspspsetspppllenppppQEKSWKKWSLSFVKPAVGPGSKSNAQTQPESPYEGLEHRLDYALKDTYGGTTRGYLSAMTSHTAYWNNYDCAYFILTRLFPTLELSSTPPDSSAYLPDFSLY
*WLDNLFCLGSPLAVFLALRVPRGHHGNHLFPPSLCSRLYNVFHPSDPIAYRLEPLVMKNYFRIAPVSIHSYNASSKPLYCDMPLEFI*********************************************************EHRLDYALKDTYGGTTRGYLSAMTSHTAYWNNYDCAYFILTRLFPTLE******************
NWLDNLFCLGSPLAVFLALRV************SLCSRLYNVFHPSDPIAYRLEPLVMKNYFRIAPVSIHSYNASSKPLYCDMPLEFIIPSPSPS***********************************************EGLEHRLDYALKDTYGGTTRGYLSAMTSHTAYWNNYDCAYFILTRL****************LPDFSLY
NWLDNLFCLGSPLAVFLALRVPRGHHGNHLFPPSLCSRLYNVFHPSDPIAYRLEPLVMKNYFRIAPVSIHSYNASSKPLYCDMPLEFIIPSPS*********************KKWSLSFVKPA*****************EGLEHRLDYALKDTYGGTTRGYLSAMTSHTAYWNNYDCAYFILTRLFPTLELSSTPPDSSAYLPDFSLY
NWLDNLFCLGSPLAVFLALRVPRGHHGNHLFPPSLCSRLYNVFHPSDPIAYRLEPLVMKNYFRIAPVSIHSYNASSKPLYCDMPLEFIIPSPSPSE*****************************************PESPYEGLEHRLDYALKDTYGGTTRGYLSAMTSHTAYWNNYDCAYFILTRLFPTLE**********YLP*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NWLDNLFCLGSPLAVFLALRVPRGHHGNHLFPPSLCSRLYNVFHPSDPIAYRLEPLVMKNYFRIAPVSIHSYNASSKPLYCDMPLEFIIPSPSPSETSPPPLLENPPPPQEKSWKKWSLSFVKPAVGPGSKSNAQTQPESPYEGLEHRLDYALKDTYGGTTRGYLSAMTSHTAYWNNYDCAYFILTRLFPTLELSSTPPDSSAYLPDFSLY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query211 2.2.26 [Sep-21-2011]
O46606875 Phospholipase DDHD1 OS=Bo yes N/A 0.876 0.211 0.330 3e-26
Q80YA3547 Phospholipase DDHD1 OS=Mu no N/A 0.507 0.195 0.481 3e-22
Q8NEL9900 Phospholipase DDHD1 OS=Ho yes N/A 0.507 0.118 0.481 3e-22
P87109757 Probable phospholipase C2 yes N/A 0.815 0.227 0.284 9e-13
P43125 1259 Protein retinal degenerat no N/A 0.379 0.063 0.404 1e-08
Q12204715 Probable phospholipase YO yes N/A 0.800 0.236 0.282 7e-08
Q9Y6Y81000 SEC23-interacting protein no N/A 0.241 0.051 0.433 2e-06
Q80Y98699 Phospholipase DDHD2 OS=Mu no N/A 0.236 0.071 0.442 2e-06
Q6NZC7998 SEC23-interacting protein no N/A 0.890 0.188 0.251 2e-06
O00562 1244 Membrane-associated phosp no N/A 0.758 0.128 0.276 2e-06
>sp|O46606|DDHD1_BOVIN Phospholipase DDHD1 OS=Bos taurus GN=DDHD1 PE=1 SV=1 Back     alignment and function desciption
 Score =  118 bits (295), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 120/245 (48%), Gaps = 60/245 (24%)

Query: 3   LDNLFCLGSPLAVFLALRVPR-GHHG--NHLFPPSLCSRLYNVFHPSDPIAYRLEPLVMK 59
           ++N FC+GSPLAVFLALR  R G+ G  +H+ P  +C+RL N+FHP+DP+AYRLEPL++K
Sbjct: 618 VENFFCMGSPLAVFLALRGIRPGNTGSQDHILPREICNRLLNIFHPTDPVAYRLEPLILK 677

Query: 60  NYFRIAPVSIHSYNASSKPLYCDMPLEFIIPSPSPSETSPPPLLENPPPPQEK---SWKK 116
           +Y  I+PV IH YN S+   Y  M   F+ P+  P+  S    +   P P      S + 
Sbjct: 678 HYSNISPVQIHWYNTSNPLPYEYMKPSFLHPAKDPTSISENEGISTIPSPVTSPVLSRRH 737

Query: 117 WSLSFVK---------PAVGPG---------SKSNAQTQPESPYEGLE------------ 146
           +  S             ++G G          +S+A    E+  + +E            
Sbjct: 738 YGESITNIGKASILGAASIGKGLGGMLFSRFGRSSASQPSETSRDSIEDEKKPVASPPMT 797

Query: 147 ----------------------HRLDYALKDTYGGTTRGYLSAMTSHTAYWNNYDCAYFI 184
                                 HR+D+ L++  G     Y SA+TSHTAYW++ D A F+
Sbjct: 798 TVATQTLPHSSSGFLDSALELDHRIDFELRE--GLVESRYWSAVTSHTAYWSSLDVALFL 855

Query: 185 LTRLF 189
           LT ++
Sbjct: 856 LTFMY 860




Phospholipase that hydrolyzes phosphatidic acid.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: -
>sp|Q80YA3|DDHD1_MOUSE Phospholipase DDHD1 OS=Mus musculus GN=Ddhd1 PE=2 SV=1 Back     alignment and function description
>sp|Q8NEL9|DDHD1_HUMAN Phospholipase DDHD1 OS=Homo sapiens GN=DDHD1 PE=1 SV=2 Back     alignment and function description
>sp|P87109|YDK2_SCHPO Probable phospholipase C20G8.02, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC20G8.02 PE=3 SV=1 Back     alignment and function description
>sp|P43125|RDGB_DROME Protein retinal degeneration B OS=Drosophila melanogaster GN=rdgB PE=1 SV=2 Back     alignment and function description
>sp|Q12204|YOR22_YEAST Probable phospholipase YOR022C, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR022C PE=1 SV=1 Back     alignment and function description
>sp|Q9Y6Y8|S23IP_HUMAN SEC23-interacting protein OS=Homo sapiens GN=SEC23IP PE=1 SV=1 Back     alignment and function description
>sp|Q80Y98|DDHD2_MOUSE Phospholipase DDHD2 OS=Mus musculus GN=Ddhd2 PE=1 SV=3 Back     alignment and function description
>sp|Q6NZC7|S23IP_MOUSE SEC23-interacting protein OS=Mus musculus GN=Sec23ip PE=1 SV=2 Back     alignment and function description
>sp|O00562|PITM1_HUMAN Membrane-associated phosphatidylinositol transfer protein 1 OS=Homo sapiens GN=PITPNM1 PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query211
242014961 1219 phospholipase ddhd1, putative [Pediculus 0.857 0.148 0.465 7e-39
328710872310 PREDICTED: phospholipase DDHD2-like [Acy 0.966 0.658 0.408 3e-35
307183315 608 Phospholipase DDHD1 [Camponotus floridan 0.886 0.307 0.454 6e-34
307206698 610 Phospholipase DDHD1 [Harpegnathos saltat 0.890 0.308 0.429 4e-33
332023936 616 Phospholipase DDHD1 [Acromyrmex echinati 0.895 0.306 0.439 2e-32
383850969 602 PREDICTED: phospholipase DDHD1-like [Meg 0.853 0.299 0.419 2e-31
110748986 601 PREDICTED: phospholipase DDHD1-like [Api 0.853 0.299 0.404 2e-31
350414488 602 PREDICTED: phospholipase DDHD1-like [Bom 0.848 0.297 0.4 4e-30
340715461 602 PREDICTED: phospholipase DDHD1-like [Bom 0.848 0.297 0.4 4e-30
345492992 681 PREDICTED: phospholipase DDHD1-like [Nas 0.895 0.277 0.385 2e-29
>gi|242014961|ref|XP_002428147.1| phospholipase ddhd1, putative [Pediculus humanus corporis] gi|212512690|gb|EEB15409.1| phospholipase ddhd1, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  166 bits (419), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 95/204 (46%), Positives = 124/204 (60%), Gaps = 23/204 (11%)

Query: 3   LDNLFCLGSPLAVFLALR-----VPRGHHGNHLFPPSLCSRLYNVFHPSDPIAYRLEPLV 57
           + N FCLGSPL+VFLALR     +P G  G  + P  LC RLYNVFHP+DP+AYR+EPL+
Sbjct: 481 VQNFFCLGSPLSVFLALRWKDSQIP-GKMG-VILPQRLCHRLYNVFHPTDPVAYRIEPLL 538

Query: 58  MKNYFRIAPVSIHSYNASSKPLYCDMPLEFIIPSP-SPSETSPPPLLENPPP-------P 109
           +K+Y R+AP+ +  YNA+ K  Y +MP+E I P   +  +TS      N          P
Sbjct: 539 IKDYARVAPLIVQPYNANYKTPYSEMPIEIIAPEQHTTQDTSVAGQSGNEKDEMNPSGVP 598

Query: 110 QEKSWKKWSLSFVKPAVGPGSKSNAQTQPESPYEGLEHRLDYALKDTYGGTTRGYLSAMT 169
           ++KSW  W L          SK       E   EGLE+RLDY L+++  G +  YLSA+T
Sbjct: 599 KDKSWNLWGLR------NRDSKKANDGTLEPLQEGLEYRLDYILRESNLGVS--YLSALT 650

Query: 170 SHTAYWNNYDCAYFILTRLFPTLE 193
           SHTAYW NYD AYF+LT++FP  E
Sbjct: 651 SHTAYWTNYDVAYFVLTQIFPEFE 674




Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328710872|ref|XP_003244388.1| PREDICTED: phospholipase DDHD2-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307183315|gb|EFN70184.1| Phospholipase DDHD1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|307206698|gb|EFN84653.1| Phospholipase DDHD1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332023936|gb|EGI64154.1| Phospholipase DDHD1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|383850969|ref|XP_003701036.1| PREDICTED: phospholipase DDHD1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|110748986|ref|XP_001119847.1| PREDICTED: phospholipase DDHD1-like [Apis mellifera] Back     alignment and taxonomy information
>gi|350414488|ref|XP_003490333.1| PREDICTED: phospholipase DDHD1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340715461|ref|XP_003396231.1| PREDICTED: phospholipase DDHD1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|345492992|ref|XP_003426970.1| PREDICTED: phospholipase DDHD1-like [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query211
MGI|MGI:2150302547 Ddhd1 "DDHD domain containing 0.360 0.138 0.587 2.1e-30
UNIPROTKB|E1C0T5807 DDHD1 "Uncharacterized protein 0.360 0.094 0.575 3.1e-30
UNIPROTKB|I3LK98875 DDHD1 "Uncharacterized protein 0.374 0.090 0.566 1.3e-29
RGD|1308576855 Ddhd1 "DDHD domain containing 0.360 0.088 0.587 1.6e-29
ZFIN|ZDB-GENE-040724-18861 ddhd1b "DDHD domain containing 0.369 0.090 0.580 2.5e-29
UNIPROTKB|E2RE68910 DDHD1 "Uncharacterized protein 0.360 0.083 0.587 3.9e-29
UNIPROTKB|E2RE74884 DDHD1 "Uncharacterized protein 0.360 0.085 0.587 4.6e-29
UNIPROTKB|G3N1K0835 DDHD1 "Phospholipase DDHD1" [B 0.360 0.091 0.587 4.9e-29
UNIPROTKB|F1N1C0875 DDHD1 "Phospholipase DDHD1" [B 0.360 0.086 0.587 5.7e-29
UNIPROTKB|O46606875 DDHD1 "Phospholipase DDHD1" [B 0.360 0.086 0.587 5.7e-29
MGI|MGI:2150302 Ddhd1 "DDHD domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 249 (92.7 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
 Identities = 47/80 (58%), Positives = 63/80 (78%)

Query:     3 LDNLFCLGSPLAVFLALRVPR-GHHGN--HLFPPSLCSRLYNVFHPSDPIAYRLEPLVMK 59
             ++N FC+GSPLAVFLALR  R G+ G+  H+ P  +C+RL N+FHP+DP+AYRLEPL++K
Sbjct:   262 VENFFCMGSPLAVFLALRGIRPGNSGSQDHILPREICNRLLNIFHPTDPVAYRLEPLILK 321

Query:    60 NYFRIAPVSIHSYNASSKPL 79
             +Y  I+PV IH YN S+ PL
Sbjct:   322 HYSNISPVQIHWYNTSN-PL 340


GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0005737 "cytoplasm" evidence=IEA
GO:0006629 "lipid metabolic process" evidence=IEA
GO:0008150 "biological_process" evidence=ND
GO:0016042 "lipid catabolic process" evidence=IEA
GO:0016787 "hydrolase activity" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
UNIPROTKB|E1C0T5 DDHD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|I3LK98 DDHD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1308576 Ddhd1 "DDHD domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040724-18 ddhd1b "DDHD domain containing 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RE68 DDHD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2RE74 DDHD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G3N1K0 DDHD1 "Phospholipase DDHD1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1N1C0 DDHD1 "Phospholipase DDHD1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O46606 DDHD1 "Phospholipase DDHD1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
pfam02862219 pfam02862, DDHD, DDHD domain 1e-34
>gnl|CDD|217255 pfam02862, DDHD, DDHD domain Back     alignment and domain information
 Score =  122 bits (307), Expect = 1e-34
 Identities = 58/216 (26%), Positives = 79/216 (36%), Gaps = 33/216 (15%)

Query: 4   DNLFCLGSPLAVFLALR----VPRG----HHGNHLFPPSLCSRLYNVFHPSDPIAYRLEP 55
           +N F +GSPL +FL LR      R        +  +    C  LYN+FHP+DP+AYRLEP
Sbjct: 6   ENFFAVGSPLGLFLLLRGTNLGARSLSYVAGEDGTYGCPACKNLYNIFHPTDPVAYRLEP 65

Query: 56  LVMKNYFRIAPVSIHSYNASSKPLYC--------------------DMPLEFIIPSPSPS 95
           LV   Y  + PV I     S                                I      S
Sbjct: 66  LVDPEYANLKPVLIPHAKKSKLGALELLESLTNIGKAVKQSVGSTTWGAGNEIASGLRNS 125

Query: 96  ETSPPPLLENPPPPQEKSWKKWSLSFVKPAVGPGSKSNAQTQPESPYEGL--EHRLDYAL 153
             S     E        S    S   ++ +     +     + E     L    R+DY L
Sbjct: 126 SASRSSTDEKSADSSTISRLSPSNVELETSEFT-REEKKSERAELRLGALNGNGRIDYVL 184

Query: 154 KDTYGGTTRGYLSAMTSHTAYWNNYDCAYFILTRLF 189
               G     YLSA++SH +YW + D A F+L  + 
Sbjct: 185 --QEGVLENQYLSALSSHVSYWESEDVALFLLKEIL 218


The DDHD domain is 180 residues long and contains four conserved residues that may form a metal binding site. The domain is named after these four residues. This pattern of conservation of metal binding residues is often seen in phosphoesterase domains. This domain is found in retinal degeneration B proteins, as well as a family of probable phospholipases. It has been shown that this domain is found in a longer C terminal region that binds to PYK2 tyrosine kinase. These proteins have been called N-terminal domain-interacting receptor (Nir1, Nir2 and Nir3). This suggests that this region is involved in functionally important interactions in other members of this family. Length = 219

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 211
PF02862227 DDHD: DDHD domain; InterPro: IPR004177 The DDHD do 100.0
KOG2308|consensus741 100.0
>PF02862 DDHD: DDHD domain; InterPro: IPR004177 The DDHD domain is 180 residues long and contains four conserved residues that may form a metal binding site Back     alignment and domain information
Probab=100.00  E-value=2.1e-48  Score=331.30  Aligned_cols=186  Identities=33%  Similarity=0.525  Sum_probs=117.5

Q ss_pred             CCceEEEecChHHHHHHhcCCCCCC---------CCCCCCccccccccccccCCCcccccccccccccccCcCceeeccc
Q psy18227          2 WLDNLFCLGSPLAVFLALRVPRGHH---------GNHLFPPSLCSRLYNVFHPSDPIAYRLEPLVMKNYFRIAPVSIHSY   72 (211)
Q Consensus         2 ~V~~lF~~GSPlg~fl~~r~~~~~~---------~~~~~~~~~c~~~yNIfhp~DPvAyRlEPli~~~~~~~~p~~ip~~   72 (211)
                      +|++|||||||||+||++|+.....         ....++.+.|.++||||||+|||||||||||+++|+.++|+.||++
T Consensus         4 ~v~~lF~~GSPlg~fl~lr~~~~~~~~~~~~~~~~~~~~~~p~~~~~yNifhp~DPvAyRlEPli~~~~~~~~P~~ip~~   83 (227)
T PF02862_consen    4 KVDNLFLVGSPLGLFLTLRGAQIGARSASEYVTDEGSFYPCPACRRIYNIFHPYDPVAYRLEPLIDPRYADIKPVSIPRF   83 (227)
T ss_pred             CcCeEEEeCCCHHHHHHHhCccccccccccccccccccccCCccccceeeeecCChHHHhHHHHHhhhhccCCCeecccc
Confidence            6999999999999999999987542         2345667789999999999999999999999999999999999999


Q ss_pred             CCCCCCccCCCC--cccccCCCCCCC--CCCCCC-CCCCCCCCcccccc---cccccC-CcCC--------CCCCCC---
Q psy18227         73 NASSKPLYCDMP--LEFIIPSPSPSE--TSPPPL-LENPPPPQEKSWKK---WSLSFV-KPAV--------GPGSKS---  132 (211)
Q Consensus        73 ~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~---~~~~~~-~~~~--------~~s~~~---  132 (211)
                      +++...++....  ..+.........  ..+... ..+..........-   ...... ....        ......   
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (227)
T PF02862_consen   84 KGGKLGHYESKKSISNIGSAISQNLSSTTSSLKNGFASSLRNSSSSLSSNDSESSDSSDSSQSSSSSDSSASSNSESSTS  163 (227)
T ss_pred             cccCcccccccchhhHHHHhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            997654432111  011100000000  000000 00000000000000   000000 0000        000000   


Q ss_pred             ---CCCCC---C--CCCCCCCCCceeEEeecCCCchHH-HHHHHhhhhhhcccchhhHHHHHHHhcC
Q psy18227        133 ---NAQTQ---P--ESPYEGLEHRLDYALKDTYGGTTR-GYLSAMTSHTAYWNNYDCAYFILTRLFP  190 (211)
Q Consensus       133 ---~~~~~---~--e~~~ln~~~RIDY~Lqe~~~~~~e-~ylsal~sH~sYW~s~D~a~FIL~el~~  190 (211)
                         .....   .  ....+|+++||||+||+   +.+| +||+||+||+|||+|+|||+|||+|||+
T Consensus       164 ~~~~~~~~~~~~~~~~~~l~~~~RiDy~Lq~---~~~~~~yl~~l~sH~sYW~s~Dva~Fil~~l~~  227 (227)
T PF02862_consen  164 NTESNEDSSSDAEKKLSKLNGNGRIDYVLQE---GVLENSYLSALTSHFSYWESKDVALFILKQLYR  227 (227)
T ss_pred             ccccccccchhhHHHHHhhcCCCccceecCC---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence               00000   0  11458999999999999   8999 9999999999999999999999999986



The domain is named after these four residues. This pattern of conservation of metal binding residues is often seen in phosphoesterase domains. This domain is found in retinal degeneration B proteins, as well as a family of probable phospholipases.; GO: 0046872 metal ion binding

>KOG2308|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00