Psyllid ID: psy18235

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MHYRVPSSGRRSLASEEEDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTIDTSLAEHILFIRAISGCDSTSALFNQGKVKALRTVVKNPDLLPYIRRFLDPASTTREITEAGERFLVVLYGGNHETTSLNKLRYKSYVTSALKVTSYIAALPPTESAASQHALNKFYQVQQWLGKNVPPTEWGWNQVGNTLIPITTLKSPAPDSLLSLVACSCKKGC
Secondary Structure (PSIPRED)
ccccccccHHHHHHHcccccEEEEEccccHHHHHHHHccccccEEEEEcccccEEEEEEcccccccHHHHHHHHHHHHcccccccHHHHcccHHHHHHHHHcccccHHHHHHHccccccHHHHHHHHHHEEEEEEcccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEccEEEEEEcccccccHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHEEcccccEEEEEccccHEEHHEHHccccccEEEEccccccEcHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHccccHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHcccccHHHHHHHHHHHHHHHHHHHccccccccccEEEEccEEEEEEcccccccHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mhyrvpssgrrslaseeeDEVVVLVGEDVDLLVILIgtrspsnvyflkpgrgkvvpvlyhpqttidtSLAEHILFIRAisgcdstsalfNQGKVKALRTvvknpdllpyirrfldpasttrEITEAGERFLVVLYggnhettslnkLRYKSYVTSALKVTSYiaalpptesaaSQHALNKFYQVQQwlgknvpptewgwnqvgntlipittlkspapdslLSLVACSCKKGC
Flexible Loop (DISEMBL)
mhyrvpssgrrslaseeeDEVVVLVGEDVDLLVILIGtrspsnvyflkpGRGKVVPVLYHPQTTIDTSLAEHILFIRAISGCDSTSALFNQGKVKalrtvvknpdllpyIRRFLDPASTTREITEAGERFLVVLYGgnhettslnklRYKSYVTSALKVTSYIAALPPTESAASQHALNKFYQVQQWLGKNVPPTEWGWNQVGNTLIPITTLKSPAPDSLLSLVacsckkgc
Low Complexity Region (SEG)
MHYRVPSSGRRSLASeeedevvvlvgedvdllvILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTIDTSLAEHILFIRAISGCDSTSALFNQGKVKALRTVVKNPDLLPYIRRFLDPASTTREITEAGERFLVVLYGGNHETTSLNKLRYKSYVTSALKVTSYIAALPPTESAASQHALNKFYQVQQWLGKNVPPTEWGWNQVGNTLIPITTLKSPAPDSLLSLVACSCKKGC
Disordered region (IsUnstruct)
********************VVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTIDTSLAEHILFIRAISGCDSTSALFNQGKVKALRTVVKNPDLLPYIRRFLDPASTTREITEAGERFLVVLYGGNHETTSLNKLRYKSYVTSALKVTSYIAALPPTESAASQHALNKFYQVQQWLGKNVPPTEWGWNQVGNTLIPITTLKSPAPDSLLSLVACS*****
Disordered Region (DISOPRED)
**YR****GRRSLASEEEDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTIDTSLAEHILFIRAISGCDSTSALFNQGKVKALRTVVKNPDLLPYIRRFLDPASTTREITEAGERFLVVLYGGNHETTSLNKLRYKSYVT**********ALPPTESAASQHALNKFYQVQQWLGKNVPPTEWGWNQVGNTLIPITTLKSPAPDSLLSLVACSCKKGC
Disordered Region (DISEMBL)
*******************EVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTIDTSLAEHILFIRAISGCDSTSALFNQGKVKALRTVVKNPDLLPYIRRFLDPASTTREITEAGERFLVVLYGGNHETTSLNKLRYKSYVTSALKVTSYIAALPPTESAASQHALNKFYQVQQWLGKNVPPTEWGWNQVGNTLIPITTLKSPAPDSLLSLVACSCKKGC
Disordered Region (DISPRO)
*******S*****ASEEEDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTIDTSLAEHILFIRAISGCDSTSALFNQGKVKALRTVVKNPDLLPYIRRFLDPASTTREITEAGERFLVVLYGGNHETTSLNKLRYKSYVTSALKVTSYIAALPPTESAASQHALNKFYQVQQWLGKNVPPTEWGWNQVGNTLIPITTLKSPAPDSLLSLVACSCKKGC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHYRVPSSGRRSLASEEEDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTIDTSLAEHILFIRAISGCDSTSALFNQGKVKALRTVVKNPDLLPYIRRFLDPASTTREITEAGERFLVVLYGGNHETTSLNKLRYKSYVTSALKVTSYIAALPPTESAASQHALNKFYQVQQWLGKNVPPTEWGWNQVGNTLIPITTLKSPAPDSLLSLVACSCKKGC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
390356505	1585	PREDICTED: uncharacterized protein LOC10	0.909	0.133	0.387	2e-32
443716458	269	hypothetical protein CAPTEDRAFT_206230 [	0.913	0.788	0.341	7e-25
443691138	1299	hypothetical protein CAPTEDRAFT_217788 [	0.784	0.140	0.340	8e-23
156371522	373	predicted protein [Nematostella vectensi	0.900	0.560	0.328	3e-22
156378368	315	predicted protein [Nematostella vectensi	0.900	0.663	0.328	3e-22
328698807	1377	PREDICTED: hypothetical protein LOC10057	0.758	0.127	0.404	6e-22
449667181	977	PREDICTED: uncharacterized protein LOC10	0.672	0.159	0.378	7e-22
443689573	449	hypothetical protein CAPTEDRAFT_216478 [	0.814	0.420	0.317	8e-22
443706049	242	hypothetical protein CAPTEDRAFT_209473 [	0.762	0.731	0.322	1e-21
443725032	773	hypothetical protein CAPTEDRAFT_192602 [	0.784	0.235	0.331	3e-21

>gi|390356505|ref|XP_003728811.1| PREDICTED: uncharacterized protein LOC100888155 [Strongylocentrotus purpuratus]

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 132/222 (59%), Gaps = 11/222 (4%)

Query: 12  SLASEEEDEV-VVLVGEDVDLLVILIGTRSPS-NVYFLKPGRGKVVPVLYHPQTTI-DTS 68
           +LA  E ++V VV+VG D DLLV+L+   + S +++ L       V  ++  Q  I DT 
Sbjct: 737 ALAVAESEQVPVVVVGTDTDLLVMLVARATTSTDMHMLCRSNPVTVFNIHEIQHVIGDTR 796

Query: 69  LAEHILFIRAISGCDSTSALFNQGKVKALRTVVKNPDLLPYIRRFLDPASTTREITEAGE 128
           +  H++F+ A++GCD+ SA++ QGK KA   V K  D    +  F D  ST  E+  AGE
Sbjct: 797 I--HLMFLHAVTGCDTVSAIYRQGKRKAFNMVHKKRDY-DLLDTFTDSGSTHDEVKRAGE 853

Query: 129 RFLVVLYGGNHETTSLNKLRYKSYVT----SALKVTSYIAALPPTESAASQHALNKFYQV 184
            F++ LYG +    SL+  R+ +Y      S+L  +  + +LPPT +AA+QH+   +  V
Sbjct: 854 AFILKLYGASR-FESLDDYRHIAYKRAIGRSSLSSSFQLESLPPTSAAANQHSYRTYLTV 912

Query: 185 QQWLGKNVPPTEWGWNQVGNTLIPITTLKSPAPDSLLSLVAC 226
           Q+W+G ++PPTEWGW     TL P+ T  + APD+LL++VAC
Sbjct: 913 QEWMGNSLPPTEWGWRFQDGTLTPVETDIAVAPDTLLNMVAC 954

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|443716458|gb|ELU07980.1| hypothetical protein CAPTEDRAFT_206230 [Capitella teleta]

 Score =  119 bits (299), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 110/231 (47%), Gaps = 19/231 (8%)

Query: 7   SSGRRSLASEEEDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTID 66
           + GR+SL +        +   D  L   L    SP NV+             Y  +TTI 
Sbjct: 21  AKGRKSLLA------ATVARGDKQLHTELESIGSPCNVH-------AACYKDYTRETTIV 67

Query: 67  TSLAEHILFIRAISGCDSTS-ALFNQGKVKALRTVVKNPDLLPYIRRFLDPASTTREITE 125
            +  + I         DS    L+ +GK  A   + +  DL P +  F  P +   EI  
Sbjct: 68  AAKRKVIAADECTGNVDSGDRTLYGKGKKTAFH-LARKTDLFPILESFEKPETPKAEIEN 126

Query: 126 AGERFLVVLYGGNHETTSLNKLRYKSYV----TSALKVTSYIAALPPTESAASQHALNKF 181
           AGE FL+  YG N   ++L+KLR+  Y      S+L  T  + +LPPT +AA+QH+L  +
Sbjct: 127 AGEEFLLKFYGSNKLVSTLDKLRHYKYKQAIRKSSLTSTIKLESLPPTSAAAAQHSLRAY 186

Query: 182 YQVQQWLGKNVPPTEWGWNQVGNTLIPITTLKSPAPDSLLSLVACSCKKGC 232
           +QVQ W GK V  T WGW      L P+ T K  AP++LL +VAC CK  C
Sbjct: 187 HQVQTWRGKMVDATAWGWQIGDGILAPVETTKGVAPENLLKMVACGCKTQC 237

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443691138|gb|ELT93079.1| hypothetical protein CAPTEDRAFT_217788 [Capitella teleta]

 Score =  112 bits (281), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 108/226 (47%), Gaps = 44/226 (19%)

Query: 12   SLASEEEDEVVVLVGEDVDLLVILIGTRSPS-NVYFLKPGRGKVVPVLYHPQTTIDTSLA 70
            +L    + + VV++G D DLLV+++   +PS N+Y     +G   P L     T      
Sbjct: 1081 ALTHSTDGQTVVVIGNDTDLLVMMVALATPSMNMYICDTTKG---PRL----CTAKVKRL 1133

Query: 71   EHILFIRAISGCDSTSALFNQGKVKALRTVVKNPDLLPYIRRFLDPASTTREITEAGERF 130
              I  ++ IS        F   KV  LR+ ++N                      AGE F
Sbjct: 1134 RFIWLVKLIS--------FPFWKV--LRSRIEN----------------------AGEEF 1161

Query: 131  LVVLYGGNHETTSLNKLRYKSYVT----SALKVTSYIAALPPTESAASQHALNKFYQVQQ 186
             + LYG N   ++L+KLRY  Y      S+L  T  + +LPPT +AA+QH+L  ++QVQ 
Sbjct: 1162 FLKLYGSNKLVSTLDKLRYYKYKQAKRKSSLTPTIKLESLPPTSAAAAQHSLRAYHQVQT 1221

Query: 187  WLGKNVPPTEWGWNQVGNTLIPITTLKSPAPDSLLSLVACSCKKGC 232
            W GK V  T WGW      L P+ T K  AP +LL +VAC CK  C
Sbjct: 1222 WRGKMVDATAWGWQIRDGILAPVETTKGVAPQNLLKMVACGCKTQC 1267

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|156371522|ref|XP_001628812.1| predicted protein [Nematostella vectensis] gi|156215798|gb|EDO36749.1| predicted protein [Nematostella vectensis]

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 10/219 (4%)

Query: 23  VLVGEDVDLLVILI--GTRSPSNVYFLKPGRGKVVPV-LYHPQTTIDT---SLAEHILFI 76
            LVGED DLL++L      +  ++ F+   + K   + +++ + T++     + ++I+F 
Sbjct: 118 ALVGEDTDLLILLCHYADANDHDILFMPQTKQKSGTMRVWNIKNTVEALGPDICKNIMFA 177

Query: 77  RAISGCDSTSALFNQGKVKALRTVVKNPDLLPYIRRFLDPASTTREITEA-GERFLVVLY 135
            AI GCD+TSAL+  GK  +L+ +  +         F    +   +I  A GE  L+ LY
Sbjct: 178 HAILGCDTTSALYGLGKGLSLKMLTSDATFRQQADIFHQADAAKNDIAAAAGETDLLCLY 237

Query: 136 GGNHETTSLNKLRYKSYVTSALKVTSYI--AALPPTESAASQHALNKFYQVQQWLGKNVP 193
            G  + T L+ LRY  +        + +   +LP   +AA  H+L  ++QVQQW G  +P
Sbjct: 238 KGLKDET-LDSLRYARFCQKISTGNTQVRPESLPQISAAAIYHSLRVYHQVQQWRGIALP 296

Query: 194 PTEWGWNQVGNTLIPITTLKSPAPDSLLSLVACSCKKGC 232
           P +WGW +V   L+P  T +S A  SLL L+ C CK GC
Sbjct: 297 PEDWGWKEVDGKLLPQRTDQSAAHPSLLELIRCKCKTGC 335

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|156378368|ref|XP_001631115.1| predicted protein [Nematostella vectensis] gi|156218149|gb|EDO39052.1| predicted protein [Nematostella vectensis]

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 10/219 (4%)

Query: 23  VLVGEDVDLLVILI--GTRSPSNVYFLKPGRGKVVPV-LYHPQTTIDT---SLAEHILFI 76
            LVGED DLL++L      +  ++ F+   + K   + +++ + T++     + ++I+F 
Sbjct: 60  ALVGEDTDLLILLCHYADANDHDILFMPQTKQKSGTMRVWNIKNTVEALGPDICKNIMFA 119

Query: 77  RAISGCDSTSALFNQGKVKALRTVVKNPDLLPYIRRFLDPASTTREITEA-GERFLVVLY 135
            AI GCD+TSAL+  GK  +L+ +  +         F    +   +I  A GE  L+ LY
Sbjct: 120 HAILGCDTTSALYGLGKGLSLKMLTSDVTFRQQADIFHQADAAKNDIAAAAGETALLCLY 179

Query: 136 GGNHETTSLNKLRYKSYVTSALKVTSYI--AALPPTESAASQHALNKFYQVQQWLGKNVP 193
            G  + T L+ LRY  +        + +   +LP   +AA  H+L  ++QVQQW G  +P
Sbjct: 180 KGLKDET-LDSLRYARFCQKISTGNTQVRPESLPQISAAAIYHSLRVYHQVQQWRGIALP 238

Query: 194 PTEWGWNQVGNTLIPITTLKSPAPDSLLSLVACSCKKGC 232
           P +WGW +V   L+P  T +S A  SLL L+ C+CK GC
Sbjct: 239 PEDWGWKEVDGKLLPQRTDQSAAHPSLLELIRCNCKTGC 277

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|328698807|ref|XP_003240738.1| PREDICTED: hypothetical protein LOC100571634 [Acyrthosiphon pisum]

 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 109/193 (56%), Gaps = 17/193 (8%)

Query: 22   VVLVGEDVDLLVILIGTRSPSN-VYFLKPGRGKVVPVLYHPQTTIDTSLAEHI------- 73
            VV++GED+DLL++L+    P N + F KPGRGK+    Y        SL EH        
Sbjct: 1190 VVVIGEDIDLLILLLTLSPPKNTIIFEKPGRGKIETRSYAV-----GSLQEHFKNEIKYF 1244

Query: 74   LFIRAISGCDSTSALFNQGKVKALRTVVKNPDLLPYIRRFLDPASTTREITEAGERFLVV 133
            +FI AI GCD+TSALF QGK+K L+TV K+ +L   +  F + +S+  EI  AGE++L+ 
Sbjct: 1245 MFIHAIGGCDTTSALFQQGKIKHLKTVKKHQELHDALLIFNNESSSPEEIERAGEKYLLA 1304

Query: 134  LYGGNHETTSLNKLRYKSYVTSAL--KVTSYIAALPPTESAASQHALNKFYQVQQWLGKN 191
            LY      TSLNKLR+  +  +A   K    +A LPPT  AA +H    + Q+Q W G  
Sbjct: 1305 LYKAPAHITSLNKLRHDVFQKTAASNKKQVQLARLPPTIDAAREHLHRVYLQIQLWRGNK 1364

Query: 192  VP--PTEWGWNQV 202
            +    TE G  ++
Sbjct: 1365 LEFRSTELGLERI 1377

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449667181|ref|XP_002159051.2| PREDICTED: uncharacterized protein LOC100200337, partial [Hydra magnipapillata]

 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 89/169 (52%), Gaps = 13/169 (7%)

Query: 69  LAEHILFIRAISGCDSTSALFNQGKVKALRTVVKNPDLLPYIRRFLDPASTTREITEAGE 128
             +H+LF+ A SGCDSTSA+F +GK   L +V K+  +      F+D  +T +EI ++  
Sbjct: 777 FKDHLLFVHAWSGCDSTSAIFGKGKAMFLNSVKKSESMKEISETFMDYWATNKEIAKSSV 836

Query: 129 RFLVVLYGGNHETTSLNKLRYKSYVTSALKVTSYIAALPPTESAASQHALNKFYQVQQWL 188
                LY G H+ TSL KLRY  Y+ +  K       LPPT+ AA  H     Y+V   L
Sbjct: 837 NAFKELYNG-HQQTSLAKLRYSKYLEALCKGIVVPEKLPPTDRAAHFHG----YRVHLQL 891

Query: 189 GK--------NVPPTEWGWNQVGNTLIPITTLKSPAPDSLLSLVACSCK 229
            +        N+ PTEWGW      L PI T K  AP +LL ++ C+C+
Sbjct: 892 IELKMLDEELNLKPTEWGWKSTDGHLEPIPTDKEIAPPNLLKVIRCNCR 940

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|443689573|gb|ELT91946.1| hypothetical protein CAPTEDRAFT_216478 [Capitella teleta]

 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 47/236 (19%)

Query: 2   HYRVPSSGRRSLASEEEDEVVVLVGEDVDLLVILIGTRSPS-NVYFLKPGRGKVVPVLYH 60
           HY V S+       + + + V+++G D DLLV+++   +PS +VY     +G  V  + H
Sbjct: 159 HYPVNST----FIVDGDGQTVIVIGNDTDLLVMMVALATPSMHVYLCDTTKGPRVFSISH 214

Query: 61  PQTTIDTSLAEHILFIRAISGCDSTSALFNQGKVKALRTVVKNPDLLPYIRRFLDPASTT 120
                                           + K  R V  +  L  Y  +   P + T
Sbjct: 215 --------------------------------REKQRRNVELSSSL--YAEKPETPKAET 240

Query: 121 REITEAGERFLVVLYGGNHETTSLNKLRYKSYVT----SALKVTSYIAALPPTESAASQH 176
             + E    FL+ LYG N   ++L+KLR+  Y      S+L  T  +  LPPT +AA+QH
Sbjct: 241 ENVRE----FLLKLYGSNKLGSTLDKLRHYKYKQAIEKSSLTSTIKLECLPPTSAAAAQH 296

Query: 177 ALNKFYQVQQWLGKNVPPTEWGWNQVGNTLIPITTLKSPAPDSLLSLVACSCKKGC 232
           +L  ++QVQ W GK V  T WGW   G  L P+ T K   P++LL +VACSCK  C
Sbjct: 297 SLRAYHQVQTWCGKRVDATAWGWQIGGGILAPVETTKGVVPENLLKMVACSCKTQC 352

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443706049|gb|ELU02310.1| hypothetical protein CAPTEDRAFT_209473 [Capitella teleta]

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 103/220 (46%), Gaps = 43/220 (19%)

Query: 18  EDEVVVLVGEDVDLLVILIGTRSPS-NVYFLKPGRGKVVPVLYHPQTTIDTSLAEHILFI 76
           + + V+++  D DLLV+++   +PS NVY     +G  V  + H +              
Sbjct: 58  DRQTVIVIDNDTDLLVMMVALATPSMNVYICDTTKGPRVFSISHRE-------------- 103

Query: 77  RAISGCDSTSALFNQGKVKALRTVVKNPDLLPYIRRFLDPASTTREITEAGERFLVVLYG 136
                             K  R V  +  L  Y  +   P + T  + E    FL+ LYG
Sbjct: 104 ------------------KQRRNVELSSSL--YAEKPETPKAETENVRE----FLLKLYG 139

Query: 137 GNHETTSLNKLRYKSYVT----SALKVTSYIAALPPTESAASQHALNKFYQVQQWLGKNV 192
            N   ++L+KLR+  Y      S+L  T  +  LPPT +AA+QH+L  ++QVQ W GK V
Sbjct: 140 SNKLGSTLDKLRHYKYKQAIEKSSLTSTIKLECLPPTSAAAAQHSLRAYHQVQTWRGKRV 199

Query: 193 PPTEWGWNQVGNTLIPITTLKSPAPDSLLSLVACSCKKGC 232
             T WGW   G  L P+ T K   P++LL +VACSCK  C
Sbjct: 200 DATAWGWQIGGGILAPVETTKGVVPENLLKMVACSCKTQC 239

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443725032|gb|ELU12774.1| hypothetical protein CAPTEDRAFT_192602 [Capitella teleta]

 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 106/226 (46%), Gaps = 44/226 (19%)

Query: 12  SLASEEEDEVVVLVGEDVDLLVILIGTRSPS-NVYFLKPGRGKVVPVLYHPQTTIDTSLA 70
           +L    + + VV++G D  LLV+++   +PS N+Y     +G   P L     T      
Sbjct: 555 ALTHSTDGQTVVVIGNDTYLLVMMVALATPSMNMYICDTTKG---PRL----CTAKVKRL 607

Query: 71  EHILFIRAISGCDSTSALFNQGKVKALRTVVKNPDLLPYIRRFLDPASTTREITEAGERF 130
             I  ++ IS        F   KV  LR+ ++N                      AGE F
Sbjct: 608 RFIWLVKLIS--------FPFWKV--LRSRIEN----------------------AGEEF 635

Query: 131 LVVLYGGNHETTSLNKLRYKSYVTSALKV----TSYIAALPPTESAASQHALNKFYQVQQ 186
            + LYG N   ++L+KLRY  Y  +  K     T  + +LPPT +AA+QH+L  ++QVQ 
Sbjct: 636 FLKLYGSNKLVSTLDKLRYYKYKQAKRKSPLTPTIKLESLPPTSAAAAQHSLRAYHQVQT 695

Query: 187 WLGKNVPPTEWGWNQVGNTLIPITTLKSPAPDSLLSLVACSCKKGC 232
           W GK V  T WGW      L P+ T K  AP +LL +VAC CK  C
Sbjct: 696 WRGKMVDATAWGWQIRDGILAPVETTKGVAPQNLLKMVACGCKTQC 741

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
cd00128	316	XPG Xeroderma pigmentosum G N- and I-regions (XPGN	96.45
PTZ00217	393	flap endonuclease-1; Provisional	95.97
cd00008	240	53EXOc 5'-3' exonuclease; T5 type 5'-3' exonucleas	95.91
PRK03980	292	flap endonuclease-1; Provisional	95.67
smart00475	259	53EXOc 5'-3' exonuclease.	95.24
PRK14976	281	5'-3' exonuclease; Provisional	95.21
TIGR03674	338	fen_arch flap structure-specific endonuclease. End	94.87
KOG2518|consensus	556		93.71
COG0258	310	Exo 5'-3' exonuclease (including N-terminal domain	92.89
KOG2519|consensus	449		91.19
cd00080	75	HhH2_motif Helix-hairpin-helix class 2 (Pol1 famil	90.04
TIGR00600	1034	rad2 DNA excision repair protein (rad2). All prote	89.98
PRK05755	880	DNA polymerase I; Provisional	87.72
PRK09482	256	flap endonuclease-like protein; Provisional	87.33
TIGR00593	887	pola DNA polymerase I. This family is based on the	85.29

>cd00128 XPG Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases

Probab=96.45  E-value=0.0051  Score=56.24  Aligned_cols=82  Identities=23%  Similarity=0.281  Sum_probs=54.3

Q ss_pred             CceEEEEeCCcceEEeeeccCCCccceeeecCC-ccccceEeccccccch-hh-HhHHHhhhhhcCCCcchhhhhcchhh
Q psy18235         19 DEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGR-GKVVPVLYHPQTTIDT-SL-AEHILFIRAISGCDSTSALFNQGKVK   95 (232)
Q Consensus        19 ~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~g~-g~~~~~i~~i~~~~~~-~~-~~~l~~~ha~tgcDtts~f~gkGK~k   95 (232)
                      |....|+|+|+|+|++..-      .++..... ++.....++.+.+.+. .+ -..++.|=++.|||.+..+-|.|-++
T Consensus       162 g~v~~i~S~DsD~l~fg~~------~vi~~~~~~~~~~~~~~~~~~~~~~lgl~~~q~id~~~L~G~Dy~~gv~giG~k~  235 (316)
T cd00128         162 GLVDAIITEDSDLLLFGAP------RVYRNLFDSGAKPVEEIDLEKILKELGLTREKLIDLAILLGCDYTEGIPGIGPVT  235 (316)
T ss_pred             CCeeEEEecCCCeeeecCc------eEEEecccCCCCceEEEEHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCCCccHHH
Confidence            5555799999999886531      22222221 1111223444444331 12 24578888999999999999999999


Q ss_pred             hhhhhccCcCh
Q psy18235         96 ALRTVVKNPDL  106 (232)
Q Consensus        96 alK~l~~n~~~  106 (232)
                      |+++++++.++
T Consensus       236 A~~li~~~~~~  246 (316)
T cd00128         236 ALKLIKKYGDI  246 (316)
T ss_pred             HHHHHHHcCCh
Confidence            99999998765

XPG is a eukaryotic enzyme that functions in nucleotide-excision repair and transcription-coupled repair of oxidative DNA damage. Functionally/structurally related to FEN-1; divalent metal ion-dependent exo- and endonuclease, and bacterial and bacteriophage 5'3' exonucleases.

>PTZ00217 flap endonuclease-1; Provisional

Probab=95.97  E-value=0.01  Score=56.53  Aligned_cols=92  Identities=16%  Similarity=0.196  Sum_probs=59.9

Q ss_pred             CCceEEEEeCCcceEEeeeccCCCccceeeec-CCccccceEeccccccch-hh-HhHHHhhhhhcCCCcchhhhhcchh
Q psy18235         18 EDEVVVLVGEDVDLLVILIGTRSPSNVYFLKP-GRGKVVPVLYHPQTTIDT-SL-AEHILFIRAISGCDSTSALFNQGKV   94 (232)
Q Consensus        18 ~~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~-g~g~~~~~i~~i~~~~~~-~~-~~~l~~~ha~tgcDtts~f~gkGK~   94 (232)
                      .|....|+|+|.|+|++..-.    .+.-+.. |.++.....++.+.+.+. .+ -..+.-+=++.|||.+...-|+|-+
T Consensus       171 ~g~v~~ViS~D~D~l~fg~~~----vi~~l~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~iL~G~Dy~pgi~GIG~k  246 (393)
T PTZ00217        171 KGKVYAVATEDMDALTFGTPV----LLRNLNFSEAKKRPIQEINLSTVLEELGLSMDQFIDLCILCGCDYCDTIKGIGPK  246 (393)
T ss_pred             CCCeEEEeCCCcCeeecCCcE----EEEcccccccCCCCeEEEEHHHHHHHhCCCHHHHHHHHHHhCCCCCCCCCCccHH
Confidence            466677899999999776411    0000111 222222223444444431 12 2447778899999999999999999


Q ss_pred             hhhhhhccCcChHHHHHHh
Q psy18235         95 KALRTVVKNPDLLPYIRRF  113 (232)
Q Consensus        95 kalK~l~~n~~~q~a~~~f  113 (232)
                      +|+++++++.++-+.+..+
T Consensus       247 tA~~Li~~~gsle~il~~~  265 (393)
T PTZ00217        247 TAYKLIKKYKSIEEILEHL  265 (393)
T ss_pred             HHHHHHHHcCCHHHHHHHH
Confidence            9999999998777666554

>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes

Probab=95.91  E-value=0.0081  Score=53.21  Aligned_cols=87  Identities=23%  Similarity=0.318  Sum_probs=58.5

Q ss_pred             cCCceEEEEeCCcceEEeeeccCCCccceeeecCCccccceEeccccccch-hh-HhHHHhhhhhcC--CCcchhhhhcc
Q psy18235         17 EEDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTIDT-SL-AEHILFIRAISG--CDSTSALFNQG   92 (232)
Q Consensus        17 ~~~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~g~g~~~~~i~~i~~~~~~-~~-~~~l~~~ha~tg--cDtts~f~gkG   92 (232)
                      ..|..++|+|.|.|++-+.-.     ...|..+++    ...++...+.++ .+ -..++-+.++.|  ||..+..-|.|
T Consensus       122 ~~g~~~~I~S~DkD~~ql~~~-----~v~~~~~~~----~~~i~~~~v~~~~g~~p~q~~d~~~L~GD~sDnipGv~GiG  192 (240)
T cd00008         122 AEGYKVVIVSGDKDLLQLVSD-----NVKVVSPMK----KKLVTEENVIEKYGVTPAQIIDYKALMGDSSDNIPGVPGIG  192 (240)
T ss_pred             HcCCeEEEEeCCCChhhhCCC-----CEEEEeCCC----ceEEeHHHHHHHhCcCHHHHHHHHHHcCCcccCCCCCCccC
Confidence            346789999999999977621     122333332    122344333321 11 244777899999  89999999999


Q ss_pred             hhhhhhhhccCcChHHHHHH
Q psy18235         93 KVKALRTVVKNPDLLPYIRR  112 (232)
Q Consensus        93 K~kalK~l~~n~~~q~a~~~  112 (232)
                      .++|.+++.++..+.+.+..
T Consensus       193 ~ktA~~Ll~~~gsle~i~~~  212 (240)
T cd00008         193 EKTAAKLLKEYGSLEGILEN  212 (240)
T ss_pred             HHHHHHHHHHhCCHHHHHHh
Confidence            99999999988766555444

They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.

>PRK03980 flap endonuclease-1; Provisional

Probab=95.67  E-value=0.033  Score=50.97  Aligned_cols=94  Identities=18%  Similarity=0.234  Sum_probs=59.2

Q ss_pred             CCceEEEEeCCcceEEeeeccCCCccceeeecCCccc---------cceEeccccccch-hh-HhHHHhhhhhcCCCcch
Q psy18235         18 EDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKV---------VPVLYHPQTTIDT-SL-AEHILFIRAISGCDSTS   86 (232)
Q Consensus        18 ~~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~g~g~~---------~~~i~~i~~~~~~-~~-~~~l~~~ha~tgcDtts   86 (232)
                      .|....|+|+|.|+|.+..-..  .-++.+ .|.++.         ....++.+.+.+. .+ -..++-+=++.|||...
T Consensus       116 ~g~vd~V~S~D~D~l~fg~~~v--ir~l~~-~~~~~~p~~~~~~~~~~e~~~~~~vl~~lgl~~~q~id~~iL~G~Dy~~  192 (292)
T PRK03980        116 KGDAWAVGSQDYDSLLFGAPRL--VRNLTI-SGKRKLPGKNVYVEVKPELIELEEVLKELGITREQLIDIAILVGTDYNP  192 (292)
T ss_pred             CCCeEEEecCCcCeeeecCCEE--EEeecc-cccccCccccccccccceeeeHHHHHHHhCCCHHHHHHHHHhcCCCCCC
Confidence            3555678999999999875221  011111 222211         0112333333321 11 24467778899999999


Q ss_pred             hhhhcchhhhhhhhccCcChHHHHHHhc
Q psy18235         87 ALFNQGKVKALRTVVKNPDLLPYIRRFL  114 (232)
Q Consensus        87 ~f~gkGK~kalK~l~~n~~~q~a~~~f~  114 (232)
                      ..-|.|-++|+++++++.++-+.+..+.
T Consensus       193 GI~GIG~ktA~kLi~~~~sle~i~~~~~  220 (292)
T PRK03980        193 GIKGIGPKTALKLIKKHGDLEKVLEERG  220 (292)
T ss_pred             CCCCccHHHHHHHHHHCCCHHHHHHhcc
Confidence            9999999999999999988777666543

>smart00475 53EXOc 5'-3' exonuclease

Probab=95.24  E-value=0.023  Score=51.09  Aligned_cols=90  Identities=24%  Similarity=0.318  Sum_probs=58.7

Q ss_pred             CCceEEEEeCCcceEEeeeccCCCccceeeecCCccccceEeccccccch-hh-HhHHHhhhhhcC--CCcchhhhhcch
Q psy18235         18 EDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTIDT-SL-AEHILFIRAISG--CDSTSALFNQGK   93 (232)
Q Consensus        18 ~~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~g~g~~~~~i~~i~~~~~~-~~-~~~l~~~ha~tg--cDtts~f~gkGK   93 (232)
                      .|..++|+|.|.|++-|.--.    ..+|. +.++......++...+.+. .+ -..+.-+.++.|  +|..+..-|.|.
T Consensus       122 ~g~~~~IvS~DkDl~ql~~~~----v~~~~-~~~~~~~~~~~~~~~v~~~~Gv~p~q~~d~~aL~GD~sDnipGV~GIG~  196 (259)
T smart00475      122 EGYEVRIVSGDKDLLQLVSDK----VSVLD-PTKGIKEFELYTPENVIEKYGLTPEQIIDYKALMGDSSDNIPGVPGIGE  196 (259)
T ss_pred             CCCeEEEEeCCCcHhhcCCCC----EEEEe-ccCCCCccEEEcHHHHHHHhCcCHHHHHHHHHHhCCcccCCCCCCCCCH
Confidence            467899999999998775311    11222 2332221233444444321 01 134777889999  899999999999


Q ss_pred             hhhhhhhccCcChHHHHHH
Q psy18235         94 VKALRTVVKNPDLLPYIRR  112 (232)
Q Consensus        94 ~kalK~l~~n~~~q~a~~~  112 (232)
                      ++|.+++.++..+-..+..
T Consensus       197 KtA~~Ll~~ygsle~i~~~  215 (259)
T smart00475      197 KTAAKLLKEFGSLENILEN  215 (259)
T ss_pred             HHHHHHHHHhCCHHHHHHH
Confidence            9999999998766555444

>PRK14976 5'-3' exonuclease; Provisional

Probab=95.21  E-value=0.027  Score=51.25  Aligned_cols=90  Identities=14%  Similarity=0.249  Sum_probs=60.6

Q ss_pred             cCCceEEEEeCCcceEEeeeccCCCccceeeecCCccccceEeccccccchh-h-HhHHHhhhhhcC--CCcchhhhhcc
Q psy18235         17 EEDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTIDTS-L-AEHILFIRAISG--CDSTSALFNQG   92 (232)
Q Consensus        17 ~~~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~g~g~~~~~i~~i~~~~~~~-~-~~~l~~~ha~tg--cDtts~f~gkG   92 (232)
                      ..|..++|+|.|.|.+.|+--+     ..+..+.++.. .+.++...+.++- + -..++-+.|+.|  +|..+..-|+|
T Consensus       127 ~~g~~v~IvS~DkDl~ql~~~~-----v~~~~~~~~~~-~~~~~~~~v~~~~gv~p~q~~d~~aL~GD~sDnipGVpGIG  200 (281)
T PRK14976        127 KQNITVLIYSSDKDLLQLVNEN-----TDVLLKKKGTS-HFILNTNNFFELYGIEPKQIIDYKGLVGDSSDNIKGVKGIG  200 (281)
T ss_pred             HCCCeEEEEeCCCCcCccCCCC-----eEEEEecCCCC-cEEEcHHHHHHHhCcCHHHHHHHHHHhCCccCCCCCCCccc
Confidence            3467899999999999886321     11222233322 2334444444311 1 234778899999  89999999999


Q ss_pred             hhhhhhhhccCcChHHHHHH
Q psy18235         93 KVKALRTVVKNPDLLPYIRR  112 (232)
Q Consensus        93 K~kalK~l~~n~~~q~a~~~  112 (232)
                      .++|.+++.++..+-..+..
T Consensus       201 ~KtA~~LL~~~gsle~i~~~  220 (281)
T PRK14976        201 PKTAIKLLNKYGNIENIYEN  220 (281)
T ss_pred             HHHHHHHHHHcCCHHHHHHh
Confidence            99999999999777665544

>TIGR03674 fen_arch flap structure-specific endonuclease

Probab=94.87  E-value=0.046  Score=50.94  Aligned_cols=92  Identities=18%  Similarity=0.233  Sum_probs=57.1

Q ss_pred             CceEEEEeCCcceEEeeeccCCCccceeeecCCcc----c-----cceEeccccccch-hh-HhHHHhhhhhcCCCcchh
Q psy18235         19 DEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGK----V-----VPVLYHPQTTIDT-SL-AEHILFIRAISGCDSTSA   87 (232)
Q Consensus        19 ~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~g~g~----~-----~~~i~~i~~~~~~-~~-~~~l~~~ha~tgcDtts~   87 (232)
                      |....|+|+|.|+|.+..-.. + -++.. .|.++    .     ...+++...+.+. .+ -..+.-+=++.|||....
T Consensus       164 g~vd~v~S~D~D~l~fg~~~v-i-~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~v~~~lgl~~~q~id~~iL~G~dyn~G  240 (338)
T TIGR03674       164 GDVDYVGSQDYDSLLFGAPRL-V-RNLTI-SGKRKLPGKNIYVEVKPELIELEEVLSELGITREQLIDIAILVGTDYNEG  240 (338)
T ss_pred             CCeeEEecCCcCeeeecCCEE-E-Eeccc-ccccCCCcccccccccceeeeHHHHHHHhCCCHHHHHHHHHhcCCCCCCC
Confidence            544478899999998865221 0 01111 12111    1     1112333333321 12 244677889999999999


Q ss_pred             hhhcchhhhhhhhccCcChHHHHHHh
Q psy18235         88 LFNQGKVKALRTVVKNPDLLPYIRRF  113 (232)
Q Consensus        88 f~gkGK~kalK~l~~n~~~q~a~~~f  113 (232)
                      ..|.|.++|+|+++++.++-..+...
T Consensus       241 v~GIG~ktA~kli~~~gsie~il~~~  266 (338)
T TIGR03674       241 VKGIGPKTALKLIKEHGDLEKVLKAR  266 (338)
T ss_pred             CCCccHHHHHHHHHHcCCHHHHHHhh
Confidence            99999999999999998776665543

Endonuclease that cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Has 5'-endo-/exonuclease and 5'-pseudo-Y-endonuclease activities. Cleaves the junction between single and double-stranded regions of flap DNA

>KOG2518|consensus

Probab=93.71  E-value=0.081  Score=52.05  Aligned_cols=101  Identities=21%  Similarity=0.138  Sum_probs=58.7

Q ss_pred             CCCCceeeeeccCCceEEEEeCCcceEEeeeccCCCccceeeecCCccccceEeccccccc-h-hh-HhHHHhhhhhcCC
Q psy18235          6 PSSGRRSLASEEEDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTID-T-SL-AEHILFIRAISGC   82 (232)
Q Consensus         6 ~~~t~~~lh~~~~~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~g~g~~~~~i~~i~~~~~-~-~~-~~~l~~~ha~tgc   82 (232)
                      +.|.+|--=. .+|.-=-|+|||.|++|...-..-.   =|=.+|.|--..+ ..+....+ . .. -..+..+=.++||
T Consensus       150 EADAQlayL~-~~~~i~~IITEDSDLl~fGc~~vif---K~d~~G~~le~~~-~~l~~~~~l~~~~~~ekfr~mciLSGC  224 (556)
T KOG2518|consen  150 EADAQLAYLE-REGIVDAIITEDSDLLVFGCKKVIF---KMDSFGNGLEINR-SKLPECKPLGDKFTEEKFRRMCILSGC  224 (556)
T ss_pred             cccchhHHHH-hcCcceEEEeccccccccCchhhee---eccCCCCcccccH-hhhhhccccccccCHHHHHHHHHhcCC
Confidence            3455542222 3444455889999999988732100   0111444332110 11111111 1 11 1235556688999


Q ss_pred             CcchhhhhcchhhhhhhhccCcChHHHHH
Q psy18235         83 DSTSALFNQGKVKALRTVVKNPDLLPYIR  111 (232)
Q Consensus        83 Dtts~f~gkGK~kalK~l~~n~~~q~a~~  111 (232)
                      |.+++.-|.|=.+|.|++.++.+....+.
T Consensus       225 DYl~slpGvGl~tA~k~l~k~~~~d~vi~  253 (556)
T KOG2518|consen  225 DYLSSLPGVGLATAHKLLSKYNTPDRVII  253 (556)
T ss_pred             cccccCccccHHHHHHHHHhcCcHHHHHH
Confidence            99999999999999999999977766543

>COG0258 Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair]

Probab=92.89  E-value=0.11  Score=47.61  Aligned_cols=90  Identities=19%  Similarity=0.328  Sum_probs=58.5

Q ss_pred             cCCceEEEEeCCcceEEeeeccCCCccceeeecCCccccceEeccccccch--hh-HhHHHhhhhhcC--CCcchhhhhc
Q psy18235         17 EEDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTIDT--SL-AEHILFIRAISG--CDSTSALFNQ   91 (232)
Q Consensus        17 ~~~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~g~g~~~~~i~~i~~~~~~--~~-~~~l~~~ha~tg--cDtts~f~gk   91 (232)
                      ..|..+.|++.|.|.+.+..-+     +.....-+|.... .++...+.+.  .+ -..|+-+=+++|  ||.++--.|+
T Consensus       133 ~~g~~~~I~S~DkD~lql~~~~-----~~~~~~~~~~~~~-~~~~~~~~e~~~g~~p~qliD~~~L~Gd~sDnipGV~GI  206 (310)
T COG0258         133 KKGDVVLIISGDKDLLQLVSPN-----VLVINGKKGEPEK-FLDLEEVEEKFKGLTPEQLIDLKALVGDSSDNIPGVKGI  206 (310)
T ss_pred             hcCCeEEEEeCCcchhhhcCCC-----cEEEeccCCCCcc-cCCHHHHHHHHcCCCHHHHHHHHHHhCCcccCCCCCCCc
Confidence            4578899999999999887744     2222222222211 1122211110  01 125788889999  9999999999


Q ss_pred             chhhhhhhhccCcChHHHHHH
Q psy18235         92 GKVKALRTVVKNPDLLPYIRR  112 (232)
Q Consensus        92 GK~kalK~l~~n~~~q~a~~~  112 (232)
                      |.++|+++++++..+-..+..
T Consensus       207 G~ktA~~Ll~~~gs~e~i~~~  227 (310)
T COG0258         207 GPKTALKLLQEYGSLEGLYEN  227 (310)
T ss_pred             CHHHHHHHHHHhCCHHHHHHh
Confidence            999999999998755444443

>KOG2519|consensus

Probab=91.19  E-value=0.1  Score=50.43  Aligned_cols=92  Identities=17%  Similarity=0.188  Sum_probs=63.0

Q ss_pred             CCceEEEEeCCcceEEeeeccCCCccceeeecCCccccceEeccccccc--hhhHhHHHhhhhhcCCCcchhhhhcchhh
Q psy18235         18 EDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTID--TSLAEHILFIRAISGCDSTSALFNQGKVK   95 (232)
Q Consensus        18 ~~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~g~g~~~~~i~~i~~~~~--~~~~~~l~~~ha~tgcDtts~f~gkGK~k   95 (232)
                      +|..--++++|.|.+-...  ......+....++|.....| +.+.+..  ..-.+.+..+-.++|||.-+...|.|+.+
T Consensus       165 ~g~V~~~at~DsD~l~fg~--~~~lr~l~~s~~~~~pv~e~-~~~~il~~l~l~~~~fidL~lLlGCDYc~~I~Gig~~~  241 (449)
T KOG2519|consen  165 AGKVYAVATEDSDALTFGA--PVKLRHLIHSLASGLPVSEY-DMSRILEGLGLSRESFIDLCLLLGCDYCPTIRGIGPKK  241 (449)
T ss_pred             cCceeeeeccccchhhccC--HHHHHHhccchhcCCCeEEe-eHHHHHHHhcccHHHHHHHHHHhcCcccccccccChHH
Confidence            4677779999999543332  11123444557776665544 5554443  11234566677789999999999999999


Q ss_pred             hhhhhccCcChHHHHHH
Q psy18235         96 ALRTVVKNPDLLPYIRR  112 (232)
Q Consensus        96 alK~l~~n~~~q~a~~~  112 (232)
                      |+++++++.+..+.+..
T Consensus       242 al~lir~~~~i~~ile~  258 (449)
T KOG2519|consen  242 ALKLIRQHGDIENILEI  258 (449)
T ss_pred             HHHHHHHhcCHHHHhhh
Confidence            99999999877776663

>cd00080 HhH2_motif Helix-hairpin-helix class 2 (Pol1 family) motif

Probab=90.04  E-value=0.28  Score=35.92  Aligned_cols=42  Identities=14%  Similarity=0.237  Sum_probs=35.8

Q ss_pred             HHHhhhhhcC--CCcchhhhhcchhhhhhhhccCcChHHHHHHh
Q psy18235         72 HILFIRAISG--CDSTSALFNQGKVKALRTVVKNPDLLPYIRRF  113 (232)
Q Consensus        72 ~l~~~ha~tg--cDtts~f~gkGK~kalK~l~~n~~~q~a~~~f  113 (232)
                      .+.-+-+++|  ||.++..-|.|.++|.+++.++.++...+...
T Consensus         9 q~~d~~~L~GD~~D~i~gv~giG~k~A~~ll~~~~~~~~~~~~~   52 (75)
T cd00080           9 QFIDLAILVGDKSDNIPGVPGIGPKTALKLLKEYGSLENLLENL   52 (75)
T ss_pred             HHHHHHHHcCCccccCCCCCcccHHHHHHHHHHhCCHHHHHHHH
Confidence            3566779999  99999999999999999999998777766553

HhH2 domains are found in Rad2 family of prokaryotic and eukaryotic replication and repair nucleases, i.e., DNA polymerase I, Taq DNA polymerase, DNA repair protein Rad2 endonuclease, flap endonuclease, exonuclease I and IX, 5'-3' exonuclease and also bacteriophage Rnase H. These nucleases degrade RNA-DNA or DNA-DNA duplexes, or both and play essential roles in DNA duplication, repair, and recombination.

>TIGR00600 rad2 DNA excision repair protein (rad2)

Probab=89.98  E-value=0.29  Score=51.98  Aligned_cols=81  Identities=16%  Similarity=0.203  Sum_probs=52.1

Q ss_pred             CCceEEEEeCCcceEEeeeccCCCccceeeecCCccccceEeccccccc-hhh-HhHHHhhhhhcCCCcchhhhhcchhh
Q psy18235         18 EDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTID-TSL-AEHILFIRAISGCDSTSALFNQGKVK   95 (232)
Q Consensus        18 ~~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~g~g~~~~~i~~i~~~~~-~~~-~~~l~~~ha~tgcDtts~f~gkGK~k   95 (232)
                      .|..-.|+|+|.|+|+...-..  .-++   ++.++. .-++....+.. -.+ ...|..+-.+.|||.+....|.|-++
T Consensus       805 ~G~vd~V~TeDsD~llFGa~~v--~rn~---~~~~~~-ve~~~~~~i~~~lglt~~qli~laiL~G~DY~~GI~GIGpkt  878 (1034)
T TIGR00600       805 LDQTSGTITDDSDIWLFGARHV--YKNF---FNQNKF-VEYYQYVDIHNQLGLDRNKLINLAYLLGSDYTEGIPTVGPVS  878 (1034)
T ss_pred             CCCeEEEEccccceeccCCcee--eecc---cCCCCc-eEEeeHHHHHHHhCCCHHHHHHHHHeeCCCCCCCCCcccHHH
Confidence            4677779999999996544211  0011   123222 22232222222 112 24577888899999999999999999


Q ss_pred             hhhhhccCc
Q psy18235         96 ALRTVVKNP  104 (232)
Q Consensus        96 alK~l~~n~  104 (232)
                      |++++.++.
T Consensus       879 Al~li~~~~  887 (1034)
T TIGR00600       879 AMEILNEFP  887 (1034)
T ss_pred             HHHHHHHcC
Confidence            999999886

All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK05755 DNA polymerase I; Provisional

Probab=87.72  E-value=0.57  Score=48.86  Aligned_cols=92  Identities=17%  Similarity=0.177  Sum_probs=61.6

Q ss_pred             cCCceEEEEeCCcceEEeeeccCCCccceeeecCCccccceEeccccccchh-h-HhHHHhhhhhcC--CCcchhhhhcc
Q psy18235         17 EEDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTIDTS-L-AEHILFIRAISG--CDSTSALFNQG   92 (232)
Q Consensus        17 ~~~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~g~g~~~~~i~~i~~~~~~~-~-~~~l~~~ha~tg--cDtts~f~gkG   92 (232)
                      ..|..++|+|.|.|++-|.--+    ..+|...+ ++. ...++.+.+.+.- + -..++-+.|+.|  +|.....-|+|
T Consensus       123 ~~~~~~~i~S~DkD~~ql~~~~----v~~~~~~~-~~~-~~~~~~~~v~~~~g~~p~q~~d~~~L~GD~sDnipGv~GiG  196 (880)
T PRK05755        123 AAGYEVLIVTGDKDLLQLVDDN----VTLLDTMG-VSK-NEELDPEEVVEKYGVTPEQIIDYLALMGDSSDNIPGVPGIG  196 (880)
T ss_pred             hCCCcEEEEcCCCChhhhCCCC----EEEeeccC-CCC-CeEEcHHHHHHHHCcCHHHHHHHHHHhCCccCCCCCCCCcc
Confidence            3467899999999999886321    11222221 111 2234444433311 1 245788999999  79999999999


Q ss_pred             hhhhhhhhccCcChHHHHHHhc
Q psy18235         93 KVKALRTVVKNPDLLPYIRRFL  114 (232)
Q Consensus        93 K~kalK~l~~n~~~q~a~~~f~  114 (232)
                      .++|.+++.++..+-+.+..+.
T Consensus       197 ~ktA~~Ll~~~gsle~i~~~~~  218 (880)
T PRK05755        197 EKTAAKLLQEYGSLEGLYENLD  218 (880)
T ss_pred             HHHHHHHHHHcCCHHHHHHhHH
Confidence            9999999999988877766553

>PRK09482 flap endonuclease-like protein; Provisional

Probab=87.33  E-value=0.79  Score=41.38  Aligned_cols=87  Identities=9%  Similarity=0.005  Sum_probs=55.3

Q ss_pred             cCCceEEEEeCCcceEEeeeccCCCccceeeecCCccccceEeccccccch-hh-HhHHHhhhhhcC--CCcchhhhhcc
Q psy18235         17 EEDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTIDT-SL-AEHILFIRAISG--CDSTSALFNQG   92 (232)
Q Consensus        17 ~~~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~g~g~~~~~i~~i~~~~~~-~~-~~~l~~~ha~tg--cDtts~f~gkG   92 (232)
                      +++..|+|+|.|.|.+-|.--+    ..+| .+.+  .  ++++...+.+. .+ -..++-+.|+.|  .|..+---|+|
T Consensus       121 ~~~~~v~I~S~DKDl~Qlv~~~----v~~~-~~~~--~--~~~~~~~v~~~~Gv~P~q~~D~~aL~GD~sDnIpGVpGIG  191 (256)
T PRK09482        121 QAGHQATIVSTDKGYCQLLSPT----IQIR-DYFQ--K--RWLDAPFIEQEFGVEPQQLPDYWGLAGISSSKIPGVAGIG  191 (256)
T ss_pred             HCCCeEEEEECCCCccccCCCC----eEEE-eccc--c--ccCCHHHHHHHhCCCHHHHHHHHHHhCCCccCCCCCCCcC
Confidence            4567899999999987665311    1122 1221  1  12333333221 01 133566779999  78889999999


Q ss_pred             hhhhhhhhccCcChHHHHHH
Q psy18235         93 KVKALRTVVKNPDLLPYIRR  112 (232)
Q Consensus        93 K~kalK~l~~n~~~q~a~~~  112 (232)
                      .++|.++++++..+-..+..
T Consensus       192 ~KtA~~LL~~~gsle~i~~~  211 (256)
T PRK09482        192 PKSAAELLNQFRSLENIYES  211 (256)
T ss_pred             hHHHHHHHHHhCCHHHHHHh
Confidence            99999999998766655544

>TIGR00593 pola DNA polymerase I

Probab=85.29  E-value=1.1  Score=47.03  Aligned_cols=92  Identities=18%  Similarity=0.235  Sum_probs=61.1

Q ss_pred             cCCceEEEEeCCcceEEeeeccCCCccceeeecCCccccceEeccccccchh-h-HhHHHhhhhhcCC--Ccchhhhhcc
Q psy18235         17 EEDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTIDTS-L-AEHILFIRAISGC--DSTSALFNQG   92 (232)
Q Consensus        17 ~~~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~g~g~~~~~i~~i~~~~~~~-~-~~~l~~~ha~tgc--Dtts~f~gkG   92 (232)
                      +.|..++|+|.|.|.+-|.--     ...+..+.++.. ...++...+.++- + -.-++-+-|+.|.  |..+..-|+|
T Consensus       121 ~~g~~v~IvS~DkDllQLv~~-----~v~~~~~~~~~~-~~~~~~~~v~~~~Gv~p~q~~D~~aL~GD~sDnIpGVpGIG  194 (887)
T TIGR00593       121 KEGYEVRIISGDKDLLQLVSD-----NVKVLIPKGKTS-FTEITPEYVVEKYGVTPDQLVDLKALVGDSSDNIPGVKGIG  194 (887)
T ss_pred             hCCCcEEEEECCCChhhcCCC-----CEEEEeccCCCC-ceEEcHHHHHHHhCCCHHHHHHHHHHcCCcccCCCCCCCcC
Confidence            446789999999999887631     122222332211 1224444333310 1 2347778899994  9999999999


Q ss_pred             hhhhhhhhccCcChHHHHHHhc
Q psy18235         93 KVKALRTVVKNPDLLPYIRRFL  114 (232)
Q Consensus        93 K~kalK~l~~n~~~q~a~~~f~  114 (232)
                      .++|.|+++++.++-+.+....
T Consensus       195 ~KtA~kLL~~ygsle~i~~~~~  216 (887)
T TIGR00593       195 EKTAAKLLQEFGSLENIYENLD  216 (887)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999988877766553

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 38/217 (17%), Positives = 59/217 (27%), Gaps = 74/217 (34%)

Query: 11  RSLASEEEDEVVVLVGEDV-DLLV---------ILIGTRSPSNVYFLKPGRGKVVPVLYH 60
           R L   +  E  +LV  +V +            IL+ TR      FL       + + +H
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 61  PQT-TIDTSLAEHILFIRAISGCDSTSALFNQGKVKALRTVVK--NPDLLPYIRRFLDPA 117
             T T D   +   L ++ +  C          + + L   V   NP  L  I   +   
Sbjct: 295 SMTLTPDEVKS---LLLKYL-DC----------RPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 118 STTREITEAGERFLVVLYGGNHETTSLNKLRYKSYVTSALK--VTSYIAALPPTESAASQ 175
             T +                          +K      L   + S +  L P E     
Sbjct: 341 LATWD-------------------------NWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 176 HALNKFYQVQQWLGKNVPPTEWGWNQVGNTLIPITTL 212
             L+ F           PP         +  IP   L
Sbjct: 376 DRLSVF-----------PP---------SAHIPTILL 392

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
1a76_A	326	Flap endonuclease-1 protein; 5'-3' EXO/endo nuclea	95.14
1ul1_X	379	Flap endonuclease-1; protein complex, DNA-binding	94.95
3q8k_A	341	Flap endonuclease 1; helix-3 turn-helix, hydrophob	94.48
2izo_A	346	FEN1, flap structure-specific endonuclease; hydrol	94.24
1rxw_A	336	Flap structure-specific endonuclease; helical clam	94.17
1b43_A	340	Protein (FEN-1); nuclease, DNA repair, DNA replica	94.15
3qe9_Y	352	Exonuclease 1; exonuclease, hydrolase-DNA complex;	93.75
1exn_A	290	5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Ent	92.41
3ory_A	363	Flap endonuclease 1; hydrolase; 2.00A {Desulfuroco	92.02
1bgx_T	832	TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhi	87.26

>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A

Probab=95.14  E-value=0.0084  Score=53.79  Aligned_cols=85  Identities=16%  Similarity=0.157  Sum_probs=57.0

Q ss_pred             CceEEEEeCCcceEEeeeccCCCccceeeecCCccccceEeccccccch-hh-HhHHHhhhhhcCCCcch-hhhhcchhh
Q psy18235         19 DEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTIDT-SL-AEHILFIRAISGCDSTS-ALFNQGKVK   95 (232)
Q Consensus        19 ~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~g~g~~~~~i~~i~~~~~~-~~-~~~l~~~ha~tgcDtts-~f~gkGK~k   95 (232)
                      |..+.|+|+|.|++.+..-.     .++.-+..|+. ...++.+.+.+. .+ -..++-+=++.|||..+ .+-|.|.++
T Consensus       164 g~~~~I~S~D~Dll~~~~~~-----v~~~~~~~~~~-~~~~~~~~v~~~~gl~~~q~id~~~L~GsD~~p~GvpGiG~kt  237 (326)
T 1a76_A          164 GDVWAVVSQDYDALLYGAPR-----VVRNLTTTKEM-PELIELNEVLEDLRISLDDLIDIAIFMGTDYNPGGVKGIGFKR  237 (326)
T ss_dssp             TSSSEEECSSSGGGGGTCSE-----EEESSSSCSSC-CEEEEHHHHHHHHTCCHHHHHHHHHHHCCTTSTTTTTTCCHHH
T ss_pred             CCEEEEecCCcccceecCCE-----EEEeecCCCCc-eEEEEHHHHHHHcCCCHHHHHHHHHHcCCCCCCCCCCCcCHHH
Confidence            66778999999999886411     22222222322 233455444431 11 24477788999999999 999999999


Q ss_pred             hhhhhccCcChHHHH
Q psy18235         96 ALRTVVKNPDLLPYI  110 (232)
Q Consensus        96 alK~l~~n~~~q~a~  110 (232)
                      |.|++++ .++-..+
T Consensus       238 A~kli~~-gsle~i~  251 (326)
T 1a76_A          238 AYELVRS-GVAKDVL  251 (326)
T ss_dssp             HHHHHHH-TCHHHHH
T ss_pred             HHHHHHc-CCHHHHH
Confidence            9999998 6665554

>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2

Probab=94.95  E-value=0.0057  Score=56.21  Aligned_cols=91  Identities=19%  Similarity=0.234  Sum_probs=58.5

Q ss_pred             CceEEEEeCCcceEEeeeccCCCccceeeec-CCccccceEeccccccch-hh-HhHHHhhhhhcCCCcchhhhhcchhh
Q psy18235         19 DEVVVLVGEDVDLLVILIGTRSPSNVYFLKP-GRGKVVPVLYHPQTTIDT-SL-AEHILFIRAISGCDSTSALFNQGKVK   95 (232)
Q Consensus        19 ~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~-g~g~~~~~i~~i~~~~~~-~~-~~~l~~~ha~tgcDtts~f~gkGK~k   95 (232)
                      +..+.|+|+|.|++.+..-.    ...++.+ +.++.....++.+.+.+. .+ -..++-+-+++|||.+..+-|.|-++
T Consensus       169 g~~~~iiS~D~Dll~~g~~~----v~~~~~~~~~~k~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~d~IpGIG~Kt  244 (379)
T 1ul1_X          169 GKVYAAATEDMDCLTFGSPV----LMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKR  244 (379)
T ss_dssp             TSSSEEECSCTHHHHTTCSE----EEECSSCCC-CCCCEEEEEHHHHHHHHTCCHHHHHHHHHHHHCSSSCCCTTCCHHH
T ss_pred             CCeEEEEecCcCccccccce----EEEEecccccCcCCeEEEeHHHHHHHhCCCHHHHHHHHHHhCCCcCCCCCCcCHHH
Confidence            45567899999998876421    1112211 122322233444444331 11 13477788999999999999999999


Q ss_pred             hhhhhccCcChHHHHHHh
Q psy18235         96 ALRTVVKNPDLLPYIRRF  113 (232)
Q Consensus        96 alK~l~~n~~~q~a~~~f  113 (232)
                      |+++++++.++-..+..+
T Consensus       245 A~kLl~~~gsle~i~~~~  262 (379)
T 1ul1_X          245 AVDLIQKHKSIEEIVRRL  262 (379)
T ss_dssp             HHHHHHHSSSHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHH
Confidence            999999998776665554

>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*

Probab=94.48  E-value=0.0092  Score=54.23  Aligned_cols=89  Identities=19%  Similarity=0.254  Sum_probs=57.1

Q ss_pred             CceEEEEeCCcceEEeeeccCCCccceeee--cC-CccccceEeccccccch-hh-HhHHHhhhhhcCCCcchhhhhcch
Q psy18235         19 DEVVVLVGEDVDLLVILIGTRSPSNVYFLK--PG-RGKVVPVLYHPQTTIDT-SL-AEHILFIRAISGCDSTSALFNQGK   93 (232)
Q Consensus        19 ~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~--~g-~g~~~~~i~~i~~~~~~-~~-~~~l~~~ha~tgcDtts~f~gkGK   93 (232)
                      |...+|+|+|.|++++..-      .++..  +. .++.....++...+.+. .+ -..++-+=+++|||.+..+-|.|.
T Consensus       169 g~v~~i~s~D~D~l~~~~~------~v~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~~gipGiG~  242 (341)
T 3q8k_A          169 GKVYAAATEDMDCLTFGSP------VLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGP  242 (341)
T ss_dssp             TSSSEEECSCTHHHHTTCS------EEEESCCCCSSCCCEEEEEEHHHHHHHHTCCHHHHHHHHHHHCCSSSCCCTTCCH
T ss_pred             CCeEEEEcCCccccccCCc------EEEEcccccccCCCceEEEcHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCCCccH
Confidence            5556678999999988641      22221  21 11222233444444331 11 134677889999999999999999


Q ss_pred             hhhhhhhccCcChHHHHHHh
Q psy18235         94 VKALRTVVKNPDLLPYIRRF  113 (232)
Q Consensus        94 ~kalK~l~~n~~~q~a~~~f  113 (232)
                      ++|+|+++++.++-..+..+
T Consensus       243 KtA~kll~~~gsle~i~~~~  262 (341)
T 3q8k_A          243 KRAVDLIQKHKSIEEIVRRL  262 (341)
T ss_dssp             HHHHHHHHHHCSHHHHHHHS
T ss_pred             HHHHHHHHHcCCHHHHHHHH
Confidence            99999999887765555544

>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}

Probab=94.24  E-value=0.0087  Score=54.21  Aligned_cols=91  Identities=18%  Similarity=0.206  Sum_probs=53.1

Q ss_pred             CCceEEEEeCCcceEEeeeccCCCccceee-ecCCccc---------cceEeccccccch-hh-HhHHHhhhhhcCCCcc
Q psy18235         18 EDEVVVLVGEDVDLLVILIGTRSPSNVYFL-KPGRGKV---------VPVLYHPQTTIDT-SL-AEHILFIRAISGCDST   85 (232)
Q Consensus        18 ~~~~~vv~~~DTDvlVl~~~~~~~~~~~~~-~~g~g~~---------~~~i~~i~~~~~~-~~-~~~l~~~ha~tgcDtt   85 (232)
                      .|..+.|+|+|.|++.+..-.    ..+++ ..|.++.         ....++...+.+. .+ -..++-+-+++|||..
T Consensus       160 ~g~~~~I~S~D~D~l~~~~~~----v~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~  235 (346)
T 2izo_A          160 LGLSWAAASQDYDAILFGAKR----LVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYN  235 (346)
T ss_dssp             TTSSSEEECSSSHHHHTTCSE----EEESSCC-----------CCCCCCEEEEHHHHHHHHTCCHHHHHHHHHHHCCSSS
T ss_pred             CCCeEEEECCCCCcceecCCe----EEEEecccccccCcccccccccceEEEEHHHHHHHcCCCHHHHHHHHHHcCCCCC
Confidence            467788999999999776421    11111 1122110         1122333333321 11 1447778899999999


Q ss_pred             h-hhhhcchhhhhhhhccCcChHHHHHH
Q psy18235         86 S-ALFNQGKVKALRTVVKNPDLLPYIRR  112 (232)
Q Consensus        86 s-~f~gkGK~kalK~l~~n~~~q~a~~~  112 (232)
                      + .+-|.|-++|+|+++++.++...+..
T Consensus       236 p~Gv~GIG~KtA~kLi~~~gsle~i~~~  263 (346)
T 2izo_A          236 PDGIRGIGPERALKIIKKYGKIEKAMEY  263 (346)
T ss_dssp             TTCSTTCCHHHHHHHHHHSSCC------
T ss_pred             CCCCCCcCHHHHHHHHHHcCCHHHHHHH
Confidence            9 99999999999999998766554444

>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A

Probab=94.17  E-value=0.007  Score=54.51  Aligned_cols=95  Identities=19%  Similarity=0.259  Sum_probs=57.9

Q ss_pred             CCceEEEEeCCcceEEeeeccCCCccceee----ecCCccc---cceEeccccccch-hh-HhHHHhhhhhcCCCcchhh
Q psy18235         18 EDEVVVLVGEDVDLLVILIGTRSPSNVYFL----KPGRGKV---VPVLYHPQTTIDT-SL-AEHILFIRAISGCDSTSAL   88 (232)
Q Consensus        18 ~~~~~vv~~~DTDvlVl~~~~~~~~~~~~~----~~g~g~~---~~~i~~i~~~~~~-~~-~~~l~~~ha~tgcDtts~f   88 (232)
                      .|..+.|+|+|.|++.+..-.. +...-+.    .+++|..   ....++.+.+.+. .+ -..++-+-++.|||..+..
T Consensus       162 ~g~~~~I~S~D~Dllql~~~~v-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~GsD~ipGv  240 (336)
T 1rxw_A          162 KGDVEYTGSQDYDSLLFGSPRL-ARNLAITGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILVGTDYNEGV  240 (336)
T ss_dssp             TTSSSEEECSSSHHHHTTCSEE-EESCCC-------------CCCCEEEEHHHHHHHHTCCHHHHHHHHHHHCBTTBCCC
T ss_pred             cCCeeEEEcCCCCcceecCCeE-EEeccccccccCCccccccccceEEeEHHHHHHHcCCCHHHHHHHHhhcCCCCCCCC
Confidence            4677889999999998764211 0000011    1222210   1122333333321 11 2447788899999999999


Q ss_pred             hhcchhhhhhhhccCcChHHHHHHh
Q psy18235         89 FNQGKVKALRTVVKNPDLLPYIRRF  113 (232)
Q Consensus        89 ~gkGK~kalK~l~~n~~~q~a~~~f  113 (232)
                      -|.|-++|.|+++++.++-..+..+
T Consensus       241 ~GiG~KtA~kLl~~~gsle~i~~~~  265 (336)
T 1rxw_A          241 KGVGVKKALNYIKTYGDIFRALKAL  265 (336)
T ss_dssp             TTCCHHHHHHHHHHHSSHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHcCCHHHHHHhC
Confidence            9999999999999987776665554

>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A

Probab=94.15  E-value=0.008  Score=54.22  Aligned_cols=86  Identities=22%  Similarity=0.215  Sum_probs=54.4

Q ss_pred             CceEEEEeCCcceEEeeeccCCCccceeeec-CCccc-----------cceEeccccccch-hh-HhHHHhhhhhcCCCc
Q psy18235         19 DEVVVLVGEDVDLLVILIGTRSPSNVYFLKP-GRGKV-----------VPVLYHPQTTIDT-SL-AEHILFIRAISGCDS   84 (232)
Q Consensus        19 ~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~-g~g~~-----------~~~i~~i~~~~~~-~~-~~~l~~~ha~tgcDt   84 (232)
                      |..+.|+|+|.|++++..-      .+.... ..|+.           ....++.+.+.+. .+ -..++-+=+++|||.
T Consensus       164 g~~~~i~S~D~D~l~~g~~------~v~~~~~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~Dy  237 (340)
T 1b43_A          164 GSVYASASQDYDSLLFGAP------RLVRNLTITGKRKLPGKNVYVEIKPELIILEEVLKELKLTREKLIELAILVGTDY  237 (340)
T ss_dssp             TSSSEEECSSSHHHHTTCS------EEEESTTTCEEEECTTSSCEEEECCEEEEHHHHHHHHTCCHHHHHHHHHHHCCTT
T ss_pred             CCEEEEEccCCCcceecCc------EEEEEeccCCCccCcccccccccceeEEEHHHHHHHhCCCHHHHHHHHHhcCCCC
Confidence            5567789999999877542      111111 11211           1112333333321 11 134777889999999


Q ss_pred             ch-hhhhcchhhhhhhhccCcChHHHH
Q psy18235         85 TS-ALFNQGKVKALRTVVKNPDLLPYI  110 (232)
Q Consensus        85 ts-~f~gkGK~kalK~l~~n~~~q~a~  110 (232)
                      ++ .+-|.|-++|+|+++++.++...+
T Consensus       238 ~p~gv~GiG~ktA~kli~~~gsle~il  264 (340)
T 1b43_A          238 NPGGIKGIGLKKALEIVRHSKDPLAKF  264 (340)
T ss_dssp             STTCSTTCCHHHHHHHHHTCSSGGGGT
T ss_pred             CCCCCCCccHHHHHHHHHHcCCHHHHH
Confidence            99 999999999999999987665443

>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*

Probab=93.75  E-value=0.043  Score=50.05  Aligned_cols=86  Identities=24%  Similarity=0.318  Sum_probs=53.4

Q ss_pred             CCceEEEEeCCcceEEeeeccCCCccceeeecCC-ccccceEeccccc--cc---hhhH-hHHHhhhhhcCCCcchhhhh
Q psy18235         18 EDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGR-GKVVPVLYHPQTT--ID---TSLA-EHILFIRAISGCDSTSALFN   90 (232)
Q Consensus        18 ~~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~g~-g~~~~~i~~i~~~--~~---~~~~-~~l~~~ha~tgcDtts~f~g   90 (232)
                      .|..+.|+|+|.|++.+..-      .+.+.... |+. .. ++...+  .+   ..+. ..+.-+=+++|||..+.+-|
T Consensus       161 ~g~~~~I~S~D~Dll~~~~~------~v~~~~~~~~~~-~~-~~~~~~~~~~~~g~~l~~~q~id~~~L~G~D~~pgv~G  232 (352)
T 3qe9_Y          161 AGIVQAIITEDSALLAFGCK------KVILKMDQFGNG-LE-IDQARLGMCRQLGDVFTEEKFRYMCILSGCDYLSSLRG  232 (352)
T ss_dssp             TTSCSEEECSCGGGGGGTCS------EEEESCCTTSEE-EE-EEGGGGTTCCTTCSSCCHHHHHHHHHHHCCSSSCCCTT
T ss_pred             CCCeEEEEeCCcCcccccCC------eEEEeccCCCCc-EE-EeHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCCCCC
Confidence            46777899999999876642      11112211 111 11 222221  11   0121 34677788999999999999


Q ss_pred             cchhhhhhhhccC--cChHHHHH
Q psy18235         91 QGKVKALRTVVKN--PDLLPYIR  111 (232)
Q Consensus        91 kGK~kalK~l~~n--~~~q~a~~  111 (232)
                      .|.++|+|+++++  .++-..+.
T Consensus       233 iG~ktA~kli~~~~~~~l~~il~  255 (352)
T 3qe9_Y          233 IGLAKACKVLRLANNPDIVKVIK  255 (352)
T ss_dssp             CCHHHHHHHHHHCCCSCHHHHHT
T ss_pred             eeHHHHHHHHHHhCCCCHHHHHH
Confidence            9999999999987  45544443

>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A

Probab=92.41  E-value=0.072  Score=47.51  Aligned_cols=89  Identities=18%  Similarity=0.218  Sum_probs=60.2

Q ss_pred             cCCceEEEEeCCcceEEeeeccCCCccceeeecCCccccceEeccccccch-hhH--hHHHhhhhhcC--CCcchhhhhc
Q psy18235         17 EEDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTIDT-SLA--EHILFIRAISG--CDSTSALFNQ   91 (232)
Q Consensus        17 ~~~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~g~g~~~~~i~~i~~~~~~-~~~--~~l~~~ha~tg--cDtts~f~gk   91 (232)
                      .+|..|+|+|.|-|++-|.--     .+.+..++    ....++...+.++ .+.  ..+.-+-++.|  ||..+..-|+
T Consensus       141 ~~G~~v~IvS~DkDl~Qlv~~-----~v~v~~~~----~~~~~~~~~v~ek~Gv~p~~q~iD~~~L~GD~sDniPGVpGI  211 (290)
T 1exn_A          141 HLYDHVWLISTDGDWDTLLTD-----KVSRFSFT----TRREYHLRDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVEGI  211 (290)
T ss_dssp             GGSSCEEEECSCGGGGGGCCS-----SEEEEETT----TTEEECGGGHHHHHSSSSHHHHHHHHHHHCBGGGTBCCCTTC
T ss_pred             HCCCcEEEEeCCCChhhcCCC-----CEEEEECC----CCEEEcHHHHHHHcCCCHHHHHHHHHHhcCCCcCCCCCCCcC
Confidence            347789999999998876631     12222333    1233455444431 111  24667889999  9999999999


Q ss_pred             chhhhhhhhccCcChHHHHHHhc
Q psy18235         92 GKVKALRTVVKNPDLLPYIRRFL  114 (232)
Q Consensus        92 GK~kalK~l~~n~~~q~a~~~f~  114 (232)
                      |.++|.|+++++.++-..+....
T Consensus       212 G~KTA~kLL~~~gsle~i~~~~~  234 (290)
T 1exn_A          212 GAKRGYNIIREFGNVLDIIDQLP  234 (290)
T ss_dssp             CHHHHHHHHHHHCSHHHHHHHCS
T ss_pred             CHhHHHHHHHHcCCHHHHHHHHH
Confidence            99999999998877766666653

>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}

Probab=92.02  E-value=0.029  Score=51.41  Aligned_cols=91  Identities=16%  Similarity=0.142  Sum_probs=55.1

Q ss_pred             CCceEEEEeCCcceEEeeeccCCCcccee-----eecCCccc---cceEeccccccch-hh-HhHHHhhhhhcCCCcch-
Q psy18235         18 EDEVVVLVGEDVDLLVILIGTRSPSNVYF-----LKPGRGKV---VPVLYHPQTTIDT-SL-AEHILFIRAISGCDSTS-   86 (232)
Q Consensus        18 ~~~~~vv~~~DTDvlVl~~~~~~~~~~~~-----~~~g~g~~---~~~i~~i~~~~~~-~~-~~~l~~~ha~tgcDtts-   86 (232)
                      .|..+.|+|+|.|++.+..-..  .-.+.     ..|++|..   ....++...+.+. .+ -..++-+=++.|||..+ 
T Consensus       177 ~g~~~~I~S~D~D~l~fg~~~v--~~~l~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~id~~~L~GsDy~p~  254 (363)
T 3ory_A          177 KGDAYASASQDYDSLLFGSPKL--VRNLTISGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENLIDIGILLGTDYNPD  254 (363)
T ss_dssp             TTSCSEEECSSSHHHHTTCSEE--EESTTTCEEEECSSTTCEEEECCEEEEHHHHHHHHTCCHHHHHHHHHHHCBTTBTT
T ss_pred             CCCeEEEECCCcCccccCCCeE--EEEeeccccccCCccccccccceEEEcHHHHHHHhCcCHHHHHHHHHHhCCCCCCC
Confidence            4677889999999998764210  00000     01222211   1122344333331 11 23467788999999889 


Q ss_pred             hhhhcchhhhhhhhccCcChHHHH
Q psy18235         87 ALFNQGKVKALRTVVKNPDLLPYI  110 (232)
Q Consensus        87 ~f~gkGK~kalK~l~~n~~~q~a~  110 (232)
                      ..-|.|.++|+|+++++.++-..+
T Consensus       255 GVpGIG~KtA~kLl~~~gsle~il  278 (363)
T 3ory_A          255 GFEGIGPKKALQLVKAYGGIEKIP  278 (363)
T ss_dssp             CSTTCCHHHHHHHHHHHTSSTTSC
T ss_pred             CCCCcCHHHHHHHHHHcCCHHHHH
Confidence            999999999999998875544433

>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*

Probab=87.26  E-value=0.051  Score=54.85  Aligned_cols=86  Identities=22%  Similarity=0.310  Sum_probs=57.1

Q ss_pred             CCceEEEEeCCcceEEeeeccCCCccceeeecCCccccceEeccccccch-hh-HhHHHhhhhhcC--CCcchhhhhcch
Q psy18235         18 EDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTIDT-SL-AEHILFIRAISG--CDSTSALFNQGK   93 (232)
Q Consensus        18 ~~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~g~g~~~~~i~~i~~~~~~-~~-~~~l~~~ha~tg--cDtts~f~gkGK   93 (232)
                      .|..++|+|+|.|++.+.--     .+.+..+ +|    ..++...+.+. .+ -..++-+-++.|  ||..+..-|+|.
T Consensus       132 ~G~~v~IvS~DkDllql~~~-----~v~~~~~-~g----~~~~~~~v~~~~gv~p~q~id~~~L~GD~sDnipGVpGIG~  201 (832)
T 1bgx_T          132 EGYEVRILTADKDLYQLLSD-----RIHVLHP-EG----YLITPAWLWEKYGLRPDQWADYRALTGDESDNLPGVKGIGE  201 (832)
T ss_dssp             HTCCBCCCCSSTTCCTTCCT-----TBCBCCS-SS----CCBCSTTHHHHTCCCGGGTTTTTTSSCCSSSCCCCCCCSSS
T ss_pred             cCCeEEEEeCCCChhhcCcC-----CEEEEeC-CC----cEEcHHHHHHHHCcCHHHHHHHHHhcCCccccCCCCCCcCc
Confidence            46678899999999887531     1222223 44    12344433321 01 134677889999  999999999999


Q ss_pred             hhhhhhhccCcChHHHHHHh
Q psy18235         94 VKALRTVVKNPDLLPYIRRF  113 (232)
Q Consensus        94 ~kalK~l~~n~~~q~a~~~f  113 (232)
                      ++|.|+++++.++-..+..+
T Consensus       202 KtA~kLl~~~gsle~i~~~~  221 (832)
T 1bgx_T          202 KTARKLLEEWGSLEALLKNL  221 (832)
T ss_dssp             CTTTTTGGGTTSSCSSSSSC
T ss_pred             hHHHHHHHHCCCHHHHHHHH
Confidence            99999999986665544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d1rxwa1	105	Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Arc	89.97
d1ul1x1	140	Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo	87.21
d1b43a1	120	Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyr	84.17

>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: SAM domain-like
superfamily: 5' to 3' exonuclease, C-terminal subdomain
family: 5' to 3' exonuclease, C-terminal subdomain
domain: Flap endonuclease-1 (Fen-1 nuclease)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.97  E-value=0.062  Score=38.82  Aligned_cols=41  Identities=20%  Similarity=0.294  Sum_probs=34.2

Q ss_pred             HHhhhhhcCCCcchhhhhcchhhhhhhhccCcChHHHHHHh
Q psy18235         73 ILFIRAISGCDSTSALFNQGKVKALRTVVKNPDLLPYIRRF  113 (232)
Q Consensus        73 l~~~ha~tgcDtts~f~gkGK~kalK~l~~n~~~q~a~~~f  113 (232)
                      +.-+=|+.|||.++..-|+|-++|+|+++++..+-..+...
T Consensus         6 ~iD~~~L~GsDn~pGV~GIG~ktA~kli~~~gsle~i~~~~   46 (105)
T d1rxwa1           6 LIDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKAL   46 (105)
T ss_dssp             HHHHHHHHCBTTBCCCTTCCHHHHHHHHHHHSSHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCCCcCHHHHHHHHHHhCCHHHHHHHH
Confidence            34456889999999999999999999999988776665554

>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: 5' to 3' exonuclease, C-terminal subdomain
family: 5' to 3' exonuclease, C-terminal subdomain
domain: Flap endonuclease-1 (Fen-1 nuclease)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.21  E-value=0.1  Score=39.01  Aligned_cols=41  Identities=17%  Similarity=0.294  Sum_probs=33.8

Q ss_pred             HHhhhhhcCCCcchhhhhcchhhhhhhhccCcChHHHHHHh
Q psy18235         73 ILFIRAISGCDSTSALFNQGKVKALRTVVKNPDLLPYIRRF  113 (232)
Q Consensus        73 l~~~ha~tgcDtts~f~gkGK~kalK~l~~n~~~q~a~~~f  113 (232)
                      +.-+=++.|||.++...|+|.++|.+++.++..+-..+...
T Consensus         6 ~id~~~L~GsD~~pgv~gIG~ktA~kli~~~~~le~i~~~~   46 (140)
T d1ul1x1           6 FVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRL   46 (140)
T ss_dssp             HHHHHHHHHCSSSCCCTTCCHHHHHHHHHHSSSHHHHHTTC
T ss_pred             HHHHHHHhCCCCCCCCCCccHHHHHHHHHHhCCHHHHHHHH
Confidence            34455889999999999999999999999998776655543

>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: SAM domain-like
superfamily: 5' to 3' exonuclease, C-terminal subdomain
family: 5' to 3' exonuclease, C-terminal subdomain
domain: Flap endonuclease-1 (Fen-1 nuclease)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.17  E-value=0.14  Score=37.90  Aligned_cols=36  Identities=25%  Similarity=0.258  Sum_probs=29.6

Q ss_pred             hhhhhcCCCcc-hhhhhcchhhhhhhhccCcChHHHH
Q psy18235         75 FIRAISGCDST-SALFNQGKVKALRTVVKNPDLLPYI  110 (232)
Q Consensus        75 ~~ha~tgcDtt-s~f~gkGK~kalK~l~~n~~~q~a~  110 (232)
                      -+=.+.|||.+ +..-|+|=++|+|+++++.++...+
T Consensus         8 dl~iL~G~DY~~~gI~GIGpktAlklikk~~~~~~~~   44 (120)
T d1b43a1           8 ELAILVGTDYNPGGIKGIGLKKALEIVRHSKDPLAKF   44 (120)
T ss_dssp             HHHHHHCCTTSTTCSTTCCHHHHHHHHHTCSSGGGGT
T ss_pred             HHHHHhCCCCCcccCCCcCHHHHHHHHHHhCCHHHHH
Confidence            34578999999 6999999999999999987655433