Psyllid ID: psy18239

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------
Protein Sequence
MRIDRCQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLKGNTRRLGSICSSL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcccccEEEEEcccHHHHHHHHccEEEEEccEEEEEcccHHHHHcccccEEEEEEEccccHHHHHHHHHHHccccEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHccccccEEEEEcccHHHHHHHHcHHEEEEcccEEEcccHHHHHHHccccEEEEEEEcccccHHHHHHHHHHccccEEEcccccccc
Coil and Loop (DISEMBL)
mridrcqhsrknsqtWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGyqlqikfppttqQNIKWFVAAYLKGNTRRLGSICSSL
Flexible Loop (DISEMBL)
mridrcqhsrknsqtwiSFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLKGNtrrlgsicssl
Low Complexity Region (SEG)
MRIDRCQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLKGNTRRLGSICSSL
Disordered region (IsUnstruct)
**************TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLKGNTRRLG******
Disordered Region (DISOPRED)
****RCQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLKGNT*****I****
Disordered Region (DISEMBL)
***********NSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLKGNTRRLGSICSSL
Disordered Region (DISPRO)
*RIDRCQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLKGNTRRL*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRIDRCQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLKGNTRRLGSICSSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	97	2.2.26 [Sep-21-2011]
Q8IZY2	2146	ATP-binding cassette sub-	yes	N/A	0.639	0.028	0.553	5e-15
Q7TNJ2	2170	ATP-binding cassette sub-	yes	N/A	0.402	0.017	0.666	6e-14
Q91V24	2159	ATP-binding cassette sub-	yes	N/A	0.670	0.030	0.507	1e-13
P41234	2434	ATP-binding cassette sub-	no	N/A	0.546	0.021	0.618	1e-13
Q9ESR9	2434	ATP-binding cassette sub-	no	N/A	0.515	0.020	0.615	4e-13
Q9BZC7	2435	ATP-binding cassette sub-	no	N/A	0.432	0.017	0.714	4e-13
P41233	2261	ATP-binding cassette sub-	no	N/A	0.432	0.018	0.690	2e-12
O95477	2261	ATP-binding cassette sub-	no	N/A	0.432	0.018	0.690	2e-12
Q8R420	1704	ATP-binding cassette sub-	no	N/A	0.639	0.036	0.530	2e-11
Q99758	1704	ATP-binding cassette sub-	no	N/A	0.649	0.036	0.522	2e-11

>sp|Q8IZY2|ABCA7_HUMAN ATP-binding cassette sub-family A member 7 OS=Homo sapiens GN=ABCA7 PE=1 SV=3

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/65 (55%), Positives = 43/65 (66%)

Query: 25   SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLK 84
            S+EECEALC+RLA+MVNGR  CLGS QHLK +FA G+ L ++ P    Q    FVAA   
Sbjct: 1984 SMEECEALCSRLAIMVNGRFRCLGSPQHLKGRFAAGHTLTLRVPAARSQPAAAFVAAEFP 2043

Query: 85   GNTRR 89
            G   R
Sbjct: 2044 GAELR 2048

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.
Homo sapiens (taxid: 9606)

>sp|Q7TNJ2|ABCA7_RAT ATP-binding cassette sub-family A member 7 OS=Rattus norvegicus GN=Abca7 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/45 (66%), Positives = 37/45 (82%)

Query: 25   SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPP 69
            S+EECEALCTRLA+MVNGR  CLGS QHLK++F  G+ L ++ PP
Sbjct: 2009 SMEECEALCTRLAIMVNGRFRCLGSAQHLKSRFGAGHTLTLRVPP 2053

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q91V24|ABCA7_MOUSE ATP-binding cassette sub-family A member 7 OS=Mus musculus GN=Abca7 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 41/65 (63%)

Query: 25   SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLK 84
            S+EECEALCTRLA+MVNGR  CLGS QHLK +F  G+ L ++ PP   +    F+     
Sbjct: 1998 SMEECEALCTRLAIMVNGRFRCLGSSQHLKGRFGAGHTLTLRVPPDQPEPAIAFIRITFP 2057

Query: 85   GNTRR 89
            G   R
Sbjct: 2058 GAELR 2062

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Mus musculus (taxid: 10090)

>sp|P41234|ABCA2_MOUSE ATP-binding cassette sub-family A member 2 OS=Mus musculus GN=Abca2 PE=1 SV=4

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 43/55 (78%), Gaps = 2/55 (3%)

Query: 25   SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFV 79
            S+EECEALCTRLA+MVNGRL CLGS+QHLKN+F  GY + ++    + QN+K  V
Sbjct: 2245 SMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRT--KSSQNVKDVV 2297

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Mus musculus (taxid: 10090)

>sp|Q9ESR9|ABCA2_RAT ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus GN=Abca2 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 42/52 (80%), Gaps = 2/52 (3%)

Query: 25   SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIK 76
            S+EECEA+CTRLA+MVNGRL CLGS+QHLKN+F  GY + ++    + QN+K
Sbjct: 2245 SMEECEAVCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRT--KSSQNVK 2294

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Rattus norvegicus (taxid: 10116)

>sp|Q9BZC7|ABCA2_HUMAN ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 37/42 (88%)

Query: 25   SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIK 66
            S+EECEALCTRLA+MVNGRL CLGS+QHLKN+F  GY + ++
Sbjct: 2244 SMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVR 2285

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Homo sapiens (taxid: 9606)

>sp|P41233|ABCA1_MOUSE ATP-binding cassette sub-family A member 1 OS=Mus musculus GN=Abca1 PE=1 SV=4

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 36/42 (85%)

Query: 25   SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIK 66
            S+EECEALCTR+A+MVNGR  CLGSVQHLKN+F  GY + ++
Sbjct: 2103 SMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVR 2144

cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport.

Mus musculus (taxid: 10090)

>sp|O95477|ABCA1_HUMAN ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=3

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 36/42 (85%)

Query: 25   SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIK 66
            S+EECEALCTR+A+MVNGR  CLGSVQHLKN+F  GY + ++
Sbjct: 2103 SMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVR 2144

cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport.

Homo sapiens (taxid: 9606)

>sp|Q8R420|ABCA3_MOUSE ATP-binding cassette sub-family A member 3 OS=Mus musculus GN=Abca3 PE=2 SV=3

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 4/66 (6%)

Query: 25   SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQN----IKWFVA 80
            S+EECEALCTRLA+MV G+  CLGS QHLK+KF  GY LQ K     +Q+     K FV 
Sbjct: 1573 SMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSLQAKVRSEGKQDALEEFKAFVD 1632

Query: 81   AYLKGN 86
                G+
Sbjct: 1633 LTFPGS 1638

Plays an important role in the formation of pulmonary surfactant, probably by transporting lipids such as cholesterol.

Mus musculus (taxid: 10090)

>sp|Q99758|ABCA3_HUMAN ATP-binding cassette sub-family A member 3 OS=Homo sapiens GN=ABCA3 PE=1 SV=2

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 25   SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQ----NIKWFVA 80
            S+EECEALCTRLA+MV G+  CLGS QHLK+KF  GY L+ K     QQ      K FV 
Sbjct: 1573 SMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSLRAKVQSEGQQEALEEFKAFVD 1632

Query: 81   AYLKGNT 87
                G+ 
Sbjct: 1633 LTFPGSV 1639

Plays an important role in the formation of pulmonary surfactant, probably by transporting lipids such as cholesterol.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
193683404	1635	PREDICTED: ATP-binding cassette sub-fami	0.670	0.039	0.630	7e-16
395831604	2144	PREDICTED: LOW QUALITY PROTEIN: ATP-bind	0.670	0.030	0.584	5e-15
340382714	1875	PREDICTED: ATP-binding cassette sub-fami	0.639	0.033	0.6	4e-14
9211112	2146	macrophage ABC transporter [Homo sapiens	0.639	0.028	0.553	1e-13
15042034	2008	ABCA-SSN [Homo sapiens]	0.639	0.030	0.553	1e-13
12656651	2146	ABC transporter member 7 [Homo sapiens]	0.639	0.028	0.553	1e-13
426386409	2146	PREDICTED: ATP-binding cassette sub-fami	0.639	0.028	0.553	2e-13
402903531	2012	PREDICTED: ATP-binding cassette sub-fami	0.721	0.034	0.528	2e-13
109122716	2148	PREDICTED: ATP-binding cassette sub-fami	0.690	0.031	0.528	2e-13
395750079	2147	PREDICTED: ATP-binding cassette sub-fami	0.639	0.028	0.553	2e-13

>gi|193683404|ref|XP_001944057.1| PREDICTED: ATP-binding cassette sub-family A member 1-like isoform 1 [Acyrthosiphon pisum] gi|328717121|ref|XP_003246127.1| PREDICTED: ATP-binding cassette sub-family A member 1-like isoform 2 [Acyrthosiphon pisum]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/65 (63%), Positives = 47/65 (72%)

Query: 25   SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLK 84
            SLEECEALC+RLA+MV+GRL C+GSVQHLKNKF+VGYQL IKF P      K +V     
Sbjct: 1512 SLEECEALCSRLAIMVDGRLCCIGSVQHLKNKFSVGYQLHIKFHPDNYTRAKDYVMKSFV 1571

Query: 85   GNTRR 89
            G   R
Sbjct: 1572 GANLR 1576

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|395831604|ref|XP_003788885.1| PREDICTED: LOW QUALITY PROTEIN: ATP-binding cassette sub-family A member 7 [Otolemur garnettii]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 46/65 (70%)

Query: 25   SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLK 84
            S+EECEALCTRLA+MVNGR  CLGSVQHLK++F  GY L ++ P    Q    FVAA  +
Sbjct: 1984 SMEECEALCTRLAIMVNGRFRCLGSVQHLKSRFGAGYTLTLRVPSERSQPAMDFVAAAFQ 2043

Query: 85   GNTRR 89
            G+  R
Sbjct: 2044 GSELR 2048

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|340382714|ref|XP_003389863.1| PREDICTED: ATP-binding cassette sub-family A member 3-like [Amphimedon queenslandica]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 46/65 (70%), Gaps = 3/65 (4%)

Query: 25   SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFP---PTTQQNIKWFVAA 81
            S+EECEALCTRLA+MVNGR  CLGS+QHLK+KF  GY LQIK P   P     I+ FV +
Sbjct: 1749 SMEECEALCTRLAIMVNGRFKCLGSIQHLKSKFGHGYTLQIKVPGASPYDTGQIQHFVGS 1808

Query: 82   YLKGN 86
               G+
Sbjct: 1809 VFPGS 1813

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

>gi|9211112|gb|AAF85794.1|AF250238_1 macrophage ABC transporter [Homo sapiens]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/65 (55%), Positives = 44/65 (67%)

Query: 25   SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLK 84
            S+EECEALC+RLA+MVNGR  CLGS QHLK +FA G+ L ++ P    Q    FVAA   
Sbjct: 1984 SMEECEALCSRLAIMVNGRFRCLGSPQHLKGRFAAGHTLTLRVPAARSQPAAAFVAAEFP 2043

Query: 85   GNTRR 89
            G+  R
Sbjct: 2044 GSELR 2048

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|15042034|dbj|BAB62294.1| ABCA-SSN [Homo sapiens]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/65 (55%), Positives = 44/65 (67%)

Query: 25   SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLK 84
            S+EECEALC+RLA+MVNGR  CLGS QHLK +FA G+ L ++ P    Q    FVAA   
Sbjct: 1846 SMEECEALCSRLAIMVNGRFRCLGSPQHLKGRFAAGHTLTLRVPAARSQPAAAFVAAEFP 1905

Query: 85   GNTRR 89
            G+  R
Sbjct: 1906 GSELR 1910

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|12656651|gb|AAK00959.1|AF328787_1 ABC transporter member 7 [Homo sapiens]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/65 (55%), Positives = 44/65 (67%)

Query: 25   SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLK 84
            S+EECEALC+RLA+MVNGR  CLGS QHLK +FA G+ L ++ P    Q    FVAA   
Sbjct: 1984 SMEECEALCSRLAIMVNGRFRCLGSPQHLKGRFAAGHTLTLRVPAARSQPAAAFVAAEFP 2043

Query: 85   GNTRR 89
            G+  R
Sbjct: 2044 GSELR 2048

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426386409|ref|XP_004059677.1| PREDICTED: ATP-binding cassette sub-family A member 7 [Gorilla gorilla gorilla]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/65 (55%), Positives = 43/65 (66%)

Query: 25   SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLK 84
            S+EECEALC+RLA+MVNGR  CLGS QHLK +FA G+ L ++ P    Q    FVAA   
Sbjct: 1984 SMEECEALCSRLAIMVNGRFRCLGSPQHLKGRFAAGHTLTLRVPAARSQPAAAFVAAQFP 2043

Query: 85   GNTRR 89
            G   R
Sbjct: 2044 GAELR 2048

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|402903531|ref|XP_003914618.1| PREDICTED: ATP-binding cassette sub-family A member 7 [Papio anubis]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/70 (52%), Positives = 44/70 (62%)

Query: 25   SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLK 84
            S+EECEALC+RLA+MVNGR  CLGS QHLK +FA G+ L ++ P    Q    FVAA   
Sbjct: 1850 SMEECEALCSRLAIMVNGRFCCLGSPQHLKGRFAAGHTLTLRVPAERSQPAAAFVAAEFP 1909

Query: 85   GNTRRLGSIC 94
            G   R    C
Sbjct: 1910 GAELREAHGC 1919

Source: Papio anubis

Species: Papio anubis

Genus: Papio

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|109122716|ref|XP_001093459.1| PREDICTED: ATP-binding cassette sub-family A member 7 isoform 1 [Macaca mulatta]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/70 (52%), Positives = 44/70 (62%)

Query: 25   SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLK 84
            S+EECEALC+RLA+MVNGR  CLGS QHLK +FA G+ L ++ P    Q    FVAA   
Sbjct: 1986 SMEECEALCSRLAIMVNGRFCCLGSPQHLKGRFAAGHTLTLRVPAERSQPAAAFVAAEFP 2045

Query: 85   GNTRRLGSIC 94
            G   R    C
Sbjct: 2046 GAELREAHGC 2055

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395750079|ref|XP_002828412.2| PREDICTED: ATP-binding cassette sub-family A member 7 [Pongo abelii]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/65 (55%), Positives = 43/65 (66%)

Query: 25   SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLK 84
            S+EECEALC+RLA+MVNGR  CLGS QHLK +FA G+ L ++ P    Q    FVAA   
Sbjct: 1985 SMEECEALCSRLAIMVNGRFRCLGSPQHLKGRFAAGHTLTLRVPAARSQPAAAFVAAEFP 2044

Query: 85   GNTRR 89
            G   R
Sbjct: 2045 GAELR 2049

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
UNIPROTKB|H0YCN5	591	ABCA7 "ATP-binding cassette su	0.628	0.103	0.573	5e-13
UNIPROTKB|E2R5S8	2346	ABCA2 "Uncharacterized protein	0.515	0.021	0.634	8.5e-13
MGI|MGI:99606	2434	Abca2 "ATP-binding cassette, s	0.515	0.020	0.634	1.2e-12
ZFIN|ZDB-GENE-030131-9826	2282	abca1b "ATP-binding cassette,	0.649	0.027	0.553	2.3e-12
RGD|620238	2434	Abca2 "ATP-binding cassette, s	0.515	0.020	0.615	2.4e-12
UNIPROTKB|Q8IZY2	2146	ABCA7 "ATP-binding cassette su	0.628	0.028	0.573	2.8e-12
UNIPROTKB|Q9BZC7	2435	ABCA2 "ATP-binding cassette su	0.515	0.020	0.615	3.9e-12
UNIPROTKB|J3QSS3	2436	ABCA2 "ATP-binding cassette su	0.515	0.020	0.615	3.9e-12
RGD|1561491	556	Abca14 "ATP-binding cassette,	0.639	0.111	0.545	4.2e-12
UNIPROTKB|F1NYP5	2275	F1NYP5 "Uncharacterized protei	0.432	0.018	0.714	1e-11

UNIPROTKB|H0YCN5 ABCA7 "ATP-binding cassette sub-family A member 7" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 5.0e-13, P = 5.0e-13
 Identities = 35/61 (57%), Positives = 42/61 (68%)

Query:    25 SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLK 84
             S+EECEALC+RLA+MVNGR  CLGS QHLK +FA G+ L ++ P    Q    FVAA   
Sbjct:   429 SMEECEALCSRLAIMVNGRFRCLGSPQHLKGRFAAGHTLTLRVPAARSQPAAAFVAAEFP 488

Query:    85 G 85
             G
Sbjct:   489 G 489

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2R5S8 ABCA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 182 (69.1 bits), Expect = 8.5e-13, Sum P(2) = 8.5e-13
 Identities = 33/52 (63%), Positives = 42/52 (80%)

Query:    25 SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIK 76
             S+EECEALCTRLA+MVNGRL CLGS+QHLKN+F  GY + ++    + QN+K
Sbjct:  2155 SMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVR--TKSSQNVK 2204

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

MGI|MGI:99606 Abca2 "ATP-binding cassette, sub-family A (ABC1), member 2" [Mus musculus (taxid:10090)]

 Score = 182 (69.1 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
 Identities = 33/52 (63%), Positives = 42/52 (80%)

Query:    25 SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIK 76
             S+EECEALCTRLA+MVNGRL CLGS+QHLKN+F  GY + ++    + QN+K
Sbjct:  2245 SMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVR--TKSSQNVK 2294

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=ISO

GO:0005764 "lysosome" evidence=ISO

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005768 "endosome" evidence=ISO

GO:0005815 "microtubule organizing center" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISO

GO:0016887 "ATPase activity" evidence=ISO

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0032383 "regulation of intracellular cholesterol transport" evidence=ISO

ZFIN|ZDB-GENE-030131-9826 abca1b "ATP-binding cassette, sub-family A (ABC1), member 1B" [Danio rerio (taxid:7955)]

 Score = 182 (69.1 bits), Expect = 2.3e-12, P = 2.3e-12
 Identities = 36/65 (55%), Positives = 46/65 (70%)

Query:    25 SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQ--LQIKFPPTTQQNIKWFVAAY 82
             S+EECEALCTR+A+MVNGR  CLGSVQHLKN+F  GY   L++  P    Q +  F+ + 
Sbjct:  2123 SMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGPDPDLQPVMKFIESE 2182

Query:    83 LKGNT 87
             L G+T
Sbjct:  2183 LPGST 2187

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

RGD|620238 Abca2 "ATP-binding cassette, subfamily A (ABC1), member 2" [Rattus norvegicus (taxid:10116)]

 Score = 179 (68.1 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
 Identities = 32/52 (61%), Positives = 42/52 (80%)

Query:    25 SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIK 76
             S+EECEA+CTRLA+MVNGRL CLGS+QHLKN+F  GY + ++    + QN+K
Sbjct:  2245 SMEECEAVCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVR--TKSSQNVK 2294

GO:0005524 "ATP binding" evidence=IEA;ISO;ISS;IDA

GO:0005764 "lysosome" evidence=ISO;ISS

GO:0005765 "lysosomal membrane" evidence=ISS

GO:0005768 "endosome" evidence=ISO;ISS

GO:0005815 "microtubule organizing center" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=ISO;ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0006810 "transport" evidence=NAS

GO:0010008 "endosome membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO;ISS

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0016887 "ATPase activity" evidence=IEA;ISO;ISS

GO:0032383 "regulation of intracellular cholesterol transport" evidence=ISO;ISS

GO:0042632 "cholesterol homeostasis" evidence=ISO;ISS

GO:0048545 "response to steroid hormone stimulus" evidence=ISO;ISS

UNIPROTKB|Q8IZY2 ABCA7 "ATP-binding cassette sub-family A member 7" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 2.8e-12, P = 2.8e-12
 Identities = 35/61 (57%), Positives = 42/61 (68%)

Query:    25 SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLK 84
             S+EECEALC+RLA+MVNGR  CLGS QHLK +FA G+ L ++ P    Q    FVAA   
Sbjct:  1984 SMEECEALCSRLAIMVNGRFRCLGSPQHLKGRFAAGHTLTLRVPAARSQPAAAFVAAEFP 2043

Query:    85 G 85
             G
Sbjct:  2044 G 2044

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=TAS

GO:0005215 "transporter activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|Q9BZC7 ABCA2 "ATP-binding cassette sub-family A member 2" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
 Identities = 32/52 (61%), Positives = 42/52 (80%)

Query:    25 SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIK 76
             S+EECEALCTRLA+MVNGRL CLGS+QHLKN+F  GY + ++    + Q++K
Sbjct:  2244 SMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVR--TKSSQSVK 2293

GO:0010008 "endosome membrane" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=NAS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=NAS

GO:0016021 "integral to membrane" evidence=IDA;RCA

GO:0006810 "transport" evidence=NAS

GO:0000166 "nucleotide binding" evidence=RCA

GO:0042493 "response to drug" evidence=TAS

GO:0005524 "ATP binding" evidence=ISS;IDA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=NAS

GO:0005765 "lysosomal membrane" evidence=RCA

GO:0042632 "cholesterol homeostasis" evidence=IEP

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0032383 "regulation of intracellular cholesterol transport" evidence=IMP

GO:0016887 "ATPase activity" evidence=IDA

GO:0048545 "response to steroid hormone stimulus" evidence=IEP

GO:0005768 "endosome" evidence=IDA

GO:0005764 "lysosome" evidence=IDA

GO:0005815 "microtubule organizing center" evidence=ISS

GO:0006200 "ATP catabolic process" evidence=IDA

UNIPROTKB|J3QSS3 ABCA2 "ATP-binding cassette sub-family A member 2" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
 Identities = 32/52 (61%), Positives = 42/52 (80%)

Query:    25 SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIK 76
             S+EECEALCTRLA+MVNGRL CLGS+QHLKN+F  GY + ++    + Q++K
Sbjct:  2245 SMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVR--TKSSQSVK 2294

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

RGD|1561491 Abca14 "ATP-binding cassette, subfamily A (ABC1), member 14" [Rattus norvegicus (taxid:10116)]

 Score = 172 (65.6 bits), Expect = 4.2e-12, P = 4.2e-12
 Identities = 36/66 (54%), Positives = 45/66 (68%)

Query:    25 SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQ----QNIKWFVA 80
             S+EECEALCTRLA+MV G+L CLGS QHLKNKF   Y + IKF   T     Q++K ++A
Sbjct:   422 SMEECEALCTRLAIMVQGKLVCLGSPQHLKNKFGNIYTMNIKFKTGTDDDVVQDLKNYIA 481

Query:    81 AYLKGN 86
                 G+
Sbjct:   482 EVFPGS 487

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|F1NYP5 F1NYP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 176 (67.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 30/42 (71%), Positives = 37/42 (88%)

Query:    25 SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIK 66
             S+EECEALCTRLA+MVNGRL CLGS+QHLKN+F  GY + ++
Sbjct:  2084 SMEECEALCTRLAIMVNGRLKCLGSIQHLKNRFGDGYMITVR 2125

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q91V24	ABCA7_MOUSE	No assigned EC number	0.5076	0.6701	0.0301	yes	N/A
Q8IZY2	ABCA7_HUMAN	No assigned EC number	0.5538	0.6391	0.0288	yes	N/A
Q7TNJ2	ABCA7_RAT	No assigned EC number	0.6666	0.4020	0.0179	yes	N/A
Q54BT5	ABCA3_DICDI	No assigned EC number	0.5116	0.4123	0.0235	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	97
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	2e-14
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	2e-10
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	5e-04
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	0.002
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	0.003

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 67.0 bits (163), Expect = 2e-14
 Identities = 29/46 (63%), Positives = 36/46 (78%), Gaps = 2/46 (4%)

Query: 25   SLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGY--QLQIKFP 68
            S+EECEALCTRLA+MV G   CLG++QHLK+KF  GY   ++IK P
Sbjct: 2129 SMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSP 2174

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 54.8 bits (133), Expect = 2e-10
 Identities = 17/30 (56%), Positives = 24/30 (80%)

Query: 25  SLEECEALCTRLAVMVNGRLSCLGSVQHLK 54
           S++E EALC R+A+M +G+L C+GS Q LK
Sbjct: 191 SMDEAEALCDRIAIMSDGKLRCIGSPQELK 220

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 12/29 (41%), Positives = 20/29 (68%)

Query: 26  LEECEALCTRLAVMVNGRLSCLGSVQHLK 54
           +EE E LC R+A++ +GR+   G+ + LK
Sbjct: 192 MEEAEQLCDRVAIIDHGRIIAEGTPEELK 220

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 35.1 bits (81), Expect = 0.002
 Identities = 11/31 (35%), Positives = 21/31 (67%)

Query: 26  LEECEALCTRLAVMVNGRLSCLGSVQHLKNK 56
           +EE + LC R+A++ +GR+   G+ + LK +
Sbjct: 184 MEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 21  LFYSS--LEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIK 66
           +  S+  LEE E LC R+ ++ +G++   G+ + LK KF     ++++
Sbjct: 190 ILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELE 237

Length = 293

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	97
KOG0059|consensus	885		99.12
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.04
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.02
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	98.97
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.96
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.93
COG1123	539	ATPase components of various ABC-type transport sy	98.92
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.91
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.89
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.89
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.87
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.86
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.84
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.81
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.8
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.79
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.79
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	98.79
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.78
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.76
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.76
COG1123	539	ATPase components of various ABC-type transport sy	98.75
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.75
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.75
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.74
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.73
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.73
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.73
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.73
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.73
COG0411	250	LivG ABC-type branched-chain amino acid transport	98.72
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.71
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.71
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.71
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.7
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.69
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.68
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.68
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.67
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.66
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.66
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.65
COG4172	534	ABC-type uncharacterized transport system, duplica	98.63
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	98.63
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.63
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.62
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.62
COG4172	534	ABC-type uncharacterized transport system, duplica	98.61
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.6
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.6
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.6
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.59
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.58
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.58
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.57
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.57
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.57
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.57
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.56
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.55
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.55
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.55
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.55
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.55
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.54
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.54
COG4559	259	ABC-type hemin transport system, ATPase component	98.54
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.53
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	98.52
PRK03695	248	vitamin B12-transporter ATPase; Provisional	98.52
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.52
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.51
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.51
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.51
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.51
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.5
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.5
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.5
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.5
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.49
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.49
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.48
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	98.48
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.48
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.47
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.47
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.47
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.46
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.46
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.46
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.46
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.46
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.45
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.45
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.45
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.45
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.44
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	98.44
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.44
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.44
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.44
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.43
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.43
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.43
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.43
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.43
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.42
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.42
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.42
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.41
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.41
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.41
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.41
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	98.41
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.4
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.4
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	98.4
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.4
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.4
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.4
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.4
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.4
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.39
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	98.39
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.39
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.39
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.39
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.38
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.38
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.38
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.38
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	98.37
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.37
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.37
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.36
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.36
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.36
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.36
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	98.36
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.36
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.36
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.36
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.35
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.35
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.35
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.35
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.35
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.34
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.34
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.34
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.33
COG4598	256	HisP ABC-type histidine transport system, ATPase c	98.33
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	98.33
PRK10938	490	putative molybdenum transport ATP-binding protein	98.32
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.32
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	98.32
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.31
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.31
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	98.31
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.3
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.3
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	98.3
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.3
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.3
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	98.3
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.3
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.3
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	98.3
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.29
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.27
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	98.27
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.27
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.27
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.26
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.26
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.26
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.26
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.26
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.26
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.26
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.26
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.25
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	98.25
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.25
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.25
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.25
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.25
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.24
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.24
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.24
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.24
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	98.24
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.24
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.23
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.23
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.23
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.23
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.23
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	98.23
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	98.22
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.22
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.21
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	98.21
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.21
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.2
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.2
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	98.2
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.2
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.19
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.18
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.17
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	98.17
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.17
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	98.17
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.16
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.15
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.13
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.13
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.12
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.12
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.11
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.11
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.11
PLN03211	659	ABC transporter G-25; Provisional	98.11
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.1
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.1
PRK10908	222	cell division protein FtsE; Provisional	98.1
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.09
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.09
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.09
COG4987	573	CydC ABC-type transport system involved in cytochr	98.08
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.07
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	98.06
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.06
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.06
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	98.06
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	98.04
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.04
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.04
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.04
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.03
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.01
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.01
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.0
COG4674	249	Uncharacterized ABC-type transport system, ATPase	98.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	97.99
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.94
PRK15064	530	ABC transporter ATP-binding protein; Provisional	97.94
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.94
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.93
COG4988	559	CydD ABC-type transport system involved in cytochr	97.9
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	97.89
cd03246	173	ABCC_Protease_Secretion This family represents the	97.89
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.88
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	97.88
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.88
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	97.86
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	97.86
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	97.86
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	97.85
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	97.84
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	97.84
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	97.83
COG4181	228	Predicted ABC-type transport system involved in ly	97.82
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	97.82
COG3845	501	ABC-type uncharacterized transport systems, ATPase	97.8
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.79
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	97.79
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	97.78
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	97.77
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	97.76
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	97.75
PLN03232	1495	ABC transporter C family member; Provisional	97.75
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	97.75
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	97.75
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	97.74
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	97.74
PLN03130	1622	ABC transporter C family member; Provisional	97.73
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	97.72
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.72
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	97.71
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	97.7
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	97.7
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	97.7
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.69
PTZ00243	1560	ABC transporter; Provisional	97.69
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	97.67
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	97.67
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.66
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	97.66
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	97.66
COG2884	223	FtsE Predicted ATPase involved in cell division [C	97.66
PLN03073	718	ABC transporter F family; Provisional	97.65
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	97.65
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	97.65
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	97.64
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	97.63
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	97.62
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	97.61
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	97.61
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	97.59
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	97.59
PLN03140	1470	ABC transporter G family member; Provisional	97.58
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.58
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	97.57
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	97.56
PRK10535	648	macrolide transporter ATP-binding /permease protei	97.56
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	97.55
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.54
COG3845	501	ABC-type uncharacterized transport systems, ATPase	97.54
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	97.54
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.51
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.5
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	97.5
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	97.49
KOG0055|consensus	1228		97.48
PRK11147	635	ABC transporter ATPase component; Reviewed	97.48
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	97.45
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	97.44
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	97.44
PLN03073	718	ABC transporter F family; Provisional	97.42
PRK00635	1809	excinuclease ABC subunit A; Provisional	97.42
PRK10938	490	putative molybdenum transport ATP-binding protein	97.42
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	97.38
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	97.37
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	97.33
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	97.32
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	97.3
PLN03140	1470	ABC transporter G family member; Provisional	97.3
KOG0054|consensus	1381		97.29
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	97.29
PRK00635	1809	excinuclease ABC subunit A; Provisional	97.28
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	97.26
PRK13409	590	putative ATPase RIL; Provisional	97.25
KOG0057|consensus	591		97.23
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	97.22
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	97.2
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	97.19
PTZ00243	1560	ABC transporter; Provisional	97.17
PLN03232	1495	ABC transporter C family member; Provisional	97.17
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	97.16
KOG0055|consensus	1228		97.13
PLN03130	1622	ABC transporter C family member; Provisional	97.11
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	97.05
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	97.05
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	96.97
PRK11147	635	ABC transporter ATPase component; Reviewed	96.97
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	96.91
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	96.85
PRK13409	590	putative ATPase RIL; Provisional	96.8
KOG0061|consensus	613		96.77
KOG0058|consensus	716		96.77
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	96.76
KOG0054|consensus	1381		96.66
COG4525	259	TauB ABC-type taurine transport system, ATPase com	96.61
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	96.56
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.54
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	96.49
PRK10522	547	multidrug transporter membrane component/ATP-bindi	96.4
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.38
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	96.17
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	96.15
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	96.09
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	95.89
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	95.8
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	95.71
COG0488	530	Uup ATPase components of ABC transporters with dup	95.68
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	95.66
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	95.34
COG0488	530	Uup ATPase components of ABC transporters with dup	95.27
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	95.24
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	95.12
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	95.1
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	94.91
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	94.86
cd03239	178	ABC_SMC_head The structural maintenance of chromos	94.78
KOG0056|consensus	790		94.72
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	94.59
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	94.33
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	94.27
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	94.22
COG4619	223	ABC-type uncharacterized transport system, ATPase	94.05
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	94.04
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	93.95
KOG0062|consensus	582		93.68
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	93.53
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	93.52
KOG2355|consensus	291		93.51
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	93.48
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	93.15
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	93.05
PRK13830	818	conjugal transfer protein TrbE; Provisional	92.97
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	92.49
PRK10869	553	recombination and repair protein; Provisional	92.41
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	91.56
PRK03918	880	chromosome segregation protein; Provisional	91.06
PRK13695	174	putative NTPase; Provisional	90.93
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	90.39
KOG0059|consensus	885		89.62
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	88.79
PHA02562	562	46 endonuclease subunit; Provisional	88.67
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	88.54
KOG0065|consensus	1391		87.71
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	87.44
PRK02224	880	chromosome segregation protein; Provisional	86.73
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	85.72
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	85.21
KOG0927|consensus	614		84.16
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	83.82
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	83.81
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	83.46
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	82.52
KOG0065|consensus	1391		81.09

>KOG0059|consensus

Probab=99.12  E-value=3.1e-10  Score=87.19  Aligned_cols=84  Identities=30%  Similarity=0.502  Sum_probs=74.2

Q ss_pred             hhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceEEEEEeCCCch-hHHHHHHHhhhc
Q psy18239          6 CQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQ-QNIKWFVAAYLK   84 (97)
Q Consensus         6 ~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   84 (97)
                      +......+++|+++|++||.|++++.+|||+++|.+|++.+.|+++++..+++..|.+.+.+....+ ..+..+++..+|
T Consensus       738 W~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~gy~l~~~~~~~~~~~~v~~~~~~~~p  817 (885)
T KOG0059|consen  738 WDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGSGYTLTVRIKELPEVSEVEKLLQNRFP  817 (885)
T ss_pred             HHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcCCcEEEEEEECCCcccchHHHHHHHhCC
Confidence            3345556666669999999999999999999999999999999999999999999999999998776 588889999999


Q ss_pred             cceee
Q psy18239         85 GNTRR   89 (97)
Q Consensus        85 ~~~~~   89 (97)
                      ++..+
T Consensus       818 ~a~~~  822 (885)
T KOG0059|consen  818 GAVLK  822 (885)
T ss_pred             Ccchh
Confidence            98754

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.04  E-value=5.9e-10  Score=76.62  Aligned_cols=58  Identities=19%  Similarity=0.196  Sum_probs=50.0

Q ss_pred             hhhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceE
Q psy18239          5 RCQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQ   62 (97)
Q Consensus         5 ~~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~   62 (97)
                      .+.+++++.+ .|.++|++|||+..++++|||+++|..|++++.|+..+++.++...|.
T Consensus       192 Il~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~HPYT  250 (316)
T COG0444         192 ILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYT  250 (316)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCCChHH
Confidence            3455666665 699999999999999999999999999999999999999887766553

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.02  E-value=4.9e-10  Score=75.39  Aligned_cols=53  Identities=15%  Similarity=0.182  Sum_probs=45.5

Q ss_pred             hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCce
Q psy18239          9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGY   61 (97)
Q Consensus         9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~   61 (97)
                      ...+.+ -++||++||||+++|..++||+.+|++|++...++|+++..++.+.+
T Consensus       178 ~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~F  231 (309)
T COG1125         178 IKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDF  231 (309)
T ss_pred             HHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHH
Confidence            333443 49999999999999999999999999999999999999988776544

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.00  E-value=5.1e-09  Score=85.92  Aligned_cols=84  Identities=37%  Similarity=0.627  Sum_probs=66.7

Q ss_pred             hhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceEEEEEeCCCch------hHHHHHH
Q psy18239          6 CQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQ------QNIKWFV   79 (97)
Q Consensus         6 ~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~   79 (97)
                      +..+.++.++|+|||++||++++++.+|||+++|.+|++.+.|+++++.++++..+.+.+.+.....      ..+..++
T Consensus      2110 ~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g~g~~l~i~~~~~~~~~~~~~~~v~~~i 2189 (2272)
T TIGR01257      2110 WNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSPKDDLLPDLNPVEQFF 2189 (2272)
T ss_pred             HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhCCceEEEEEEcCcchhhhhHHHHHHHHH
Confidence            3445555556899999999999999999999999999999999999999999988888887764322      2345566


Q ss_pred             Hhhhccceee
Q psy18239         80 AAYLKGNTRR   89 (97)
Q Consensus        80 ~~~~~~~~~~   89 (97)
                      ...+|+....
T Consensus      2190 ~~~fp~a~~~ 2199 (2272)
T TIGR01257      2190 QGNFPGSVQR 2199 (2272)
T ss_pred             hhcCccceee
Confidence            7777866543

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.97  E-value=9.6e-10  Score=75.88  Aligned_cols=49  Identities=18%  Similarity=0.268  Sum_probs=44.4

Q ss_pred             cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceE
Q psy18239         14 QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQ   62 (97)
Q Consensus        14 ~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~   62 (97)
                      +-++||+++|||++++.++.|||.+|++|+++..|+|+++..++.+.|.
T Consensus       213 ~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV  261 (386)
T COG4175         213 KLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYV  261 (386)
T ss_pred             HhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHHH
Confidence            3479999999999999999999999999999999999999887776553

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.96  E-value=1.8e-09  Score=71.02  Aligned_cols=51  Identities=8%  Similarity=0.107  Sum_probs=46.1

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      ...++.++|+|.++|||+|.+|...+||+++|++|+++..|++++++.++.
T Consensus       178 vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~  228 (240)
T COG1126         178 VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK  228 (240)
T ss_pred             HHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence            356678889999999999999999999999999999999999999877654

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.93  E-value=8.5e-09  Score=70.94  Aligned_cols=52  Identities=27%  Similarity=0.264  Sum_probs=45.0

Q ss_pred             hhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          6 CQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         6 ~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      +..+.++.++|.|||++||+++++..+||++++|++|++.+.|+++++....
T Consensus       178 ~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~~  229 (306)
T PRK13537        178 WERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESE  229 (306)
T ss_pred             HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhcc
Confidence            3445556556899999999999999999999999999999999999987654

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.92  E-value=3.3e-09  Score=77.44  Aligned_cols=61  Identities=13%  Similarity=0.144  Sum_probs=52.5

Q ss_pred             hhhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceEEEE
Q psy18239          5 RCQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQI   65 (97)
Q Consensus         5 ~~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~   65 (97)
                      ..++++.+.+ .|+++|++|||+..++++|||+++|.+|++++.|++++++.++...|.-.+
T Consensus       193 IL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~~L  254 (539)
T COG1123         193 ILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRGL  254 (539)
T ss_pred             HHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccHHH
Confidence            4455677664 599999999999999999999999999999999999999998877775443

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.91  E-value=2e-08  Score=82.58  Aligned_cols=84  Identities=20%  Similarity=0.226  Sum_probs=69.6

Q ss_pred             hhhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceEEEEEeCCC--------------
Q psy18239          5 RCQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPT--------------   70 (97)
Q Consensus         5 ~~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~--------------   70 (97)
                      -+..+++.+ +|+|||++||+++++..+|||+++|.+|++.+.|++..+.++++.+|.+.+.....              
T Consensus      1100 l~~lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g~gy~l~~~~~~~~~~~~~~~~~~~~~ 1178 (2272)
T TIGR01257      1100 IWDLLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKNIQSQRGGCEGTCS 1178 (2272)
T ss_pred             HHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcCCcEEEEEEeccccccccccccccccc
Confidence            344555554 48999999999999999999999999999999999999999999999888765420              


Q ss_pred             -------------------------chhHHHHHHHhhhccceee
Q psy18239         71 -------------------------TQQNIKWFVAAYLKGNTRR   89 (97)
Q Consensus        71 -------------------------~~~~~~~~~~~~~~~~~~~   89 (97)
                                               ....+.+++++.+|++.+.
T Consensus      1179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~iP~a~l~ 1222 (2272)
T TIGR01257      1179 CTSKGFSTRCPARVDEITPEQVLDGDVNELMDLVYHHVPEAKLV 1222 (2272)
T ss_pred             ccccccccccccccccccccccccccHHHHHHHHHHhCCCcEEE
Confidence                                     1256788899999998764

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.89  E-value=4.1e-09  Score=71.01  Aligned_cols=51  Identities=10%  Similarity=0.194  Sum_probs=44.4

Q ss_pred             hhhhhhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          5 RCQHSRKNS-QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         5 ~~~~~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .++.++++. ++|+|+|+++||++.|.+|||++++|++|++...|+|.++.+
T Consensus       177 vl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT  228 (258)
T COG1120         177 VLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT  228 (258)
T ss_pred             HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence            345566666 459999999999999999999999999999999999988754

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.89  E-value=3e-09  Score=73.05  Aligned_cols=53  Identities=21%  Similarity=0.281  Sum_probs=46.4

Q ss_pred             hhhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          5 RCQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         5 ~~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      ...+++++++ .|.||+++||.|+.+..+|||+++|++|+++..|+..+++.++
T Consensus       180 IL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~P  233 (339)
T COG1135         180 ILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP  233 (339)
T ss_pred             HHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCc
Confidence            4556777665 4999999999999999999999999999999999999886654

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.87  E-value=9.2e-09  Score=69.87  Aligned_cols=60  Identities=15%  Similarity=0.323  Sum_probs=54.0

Q ss_pred             hhhh-ccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceEEEEEeC
Q psy18239          9 SRKN-SQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFP   68 (97)
Q Consensus         9 ~~~~-~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~   68 (97)
                      +++. .+++.||+++||+++.++.+|+|++.|+.|++++.|+.+.+...++....+.+.+.
T Consensus       199 lke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~k~~~~el~  259 (325)
T COG4586         199 LKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFSVELK  259 (325)
T ss_pred             HHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCceEEEEEEc
Confidence            3443 34689999999999999999999999999999999999999999998888888887

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.86  E-value=2.1e-08  Score=70.02  Aligned_cols=53  Identities=26%  Similarity=0.279  Sum_probs=45.4

Q ss_pred             hhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          6 CQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         6 ~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      +..+.++.++|.|||++||+++++..+||++++|++|++...|+++++.....
T Consensus       212 ~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~~~  264 (340)
T PRK13536        212 WERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHI  264 (340)
T ss_pred             HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhhcc
Confidence            34455555568999999999999999999999999999999999999876543

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.84  E-value=2.4e-08  Score=68.48  Aligned_cols=57  Identities=26%  Similarity=0.411  Sum_probs=48.5

Q ss_pred             hhhhhhhhhccCC-cEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCc
Q psy18239          4 DRCQHSRKNSQTW-ISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVG   60 (97)
Q Consensus         4 ~~~~~~~~~~~~~-~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~   60 (97)
                      .-++.++.+.++| +||+++||.++++..+||++++|++|++++.|++.++...+...
T Consensus       174 ~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~~  231 (293)
T COG1131         174 EIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGK  231 (293)
T ss_pred             HHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhccC
Confidence            3455677777766 89999999999999999999999999999999999987765543

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.81  E-value=1.3e-08  Score=69.92  Aligned_cols=59  Identities=19%  Similarity=0.193  Sum_probs=50.2

Q ss_pred             hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceEEEEEe
Q psy18239          9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKF   67 (97)
Q Consensus         9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~   67 (97)
                      +.++.+ .|.|.+++|||.+++..+|||+++|++|++...|++++++..+.....+.+..
T Consensus       180 Lr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~fV~~f~G  239 (345)
T COG1118         180 LRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFVARFLG  239 (345)
T ss_pred             HHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCccceecccc
Confidence            444444 48999999999999999999999999999999999999999887766655544

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.80  E-value=1.7e-08  Score=66.03  Aligned_cols=49  Identities=22%  Similarity=0.321  Sum_probs=43.6

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      ..+++..|++++++||.|++++.+||+++++.+|.+++.|+.+.+....
T Consensus       176 i~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~  224 (245)
T COG4555         176 IKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART  224 (245)
T ss_pred             HHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence            4455666999999999999999999999999999999999999987643

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.79  E-value=1.7e-08  Score=70.07  Aligned_cols=51  Identities=12%  Similarity=0.096  Sum_probs=44.0

Q ss_pred             hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +..+.++.+ .|.|+|++|||++.+..+||++++|.+|+++..|+.+++...
T Consensus       198 ~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~~~  249 (330)
T PRK15093        198 FRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTT  249 (330)
T ss_pred             HHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            445566655 489999999999999999999999999999999999888654

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.79  E-value=2e-08  Score=66.94  Aligned_cols=54  Identities=15%  Similarity=0.142  Sum_probs=46.4

Q ss_pred             hhhhhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          4 DRCQHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         4 ~~~~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      ..+..+.++.++ |.|+|++|||++.+..+||++++|++|+++..|++.++++..
T Consensus       176 ~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~  230 (235)
T COG1122         176 ELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA  230 (235)
T ss_pred             HHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence            344556777666 789999999999999999999999999999999998887643

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=98.79  E-value=1.7e-08  Score=70.15  Aligned_cols=52  Identities=13%  Similarity=0.170  Sum_probs=44.4

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      ..+.++.+ .|.|+|++|||++.+..+||++++|.+|+++..|+++++...+.
T Consensus       202 ~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~~p~  254 (330)
T PRK09473        202 TLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPS  254 (330)
T ss_pred             HHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence            34555554 48999999999999999999999999999999999999876543

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.78  E-value=2.6e-08  Score=66.46  Aligned_cols=50  Identities=14%  Similarity=0.199  Sum_probs=44.6

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      +.+..+++.|++++|||++.+.++||++++|++|.+...|++++..+.|.
T Consensus       190 l~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~  239 (249)
T COG1134         190 LNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYE  239 (249)
T ss_pred             HHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHH
Confidence            44554667999999999999999999999999999999999999887665

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.76  E-value=1.5e-08  Score=67.61  Aligned_cols=51  Identities=22%  Similarity=0.354  Sum_probs=44.6

Q ss_pred             hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +.++.++++ .+.|+|++|||+..+..+|||+++|++|.++..++..++...
T Consensus       181 lnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~  232 (252)
T COG1124         181 LNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH  232 (252)
T ss_pred             HHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence            445666665 489999999999999999999999999999999999998664

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.76  E-value=4.7e-08  Score=67.03  Aligned_cols=52  Identities=25%  Similarity=0.438  Sum_probs=44.9

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      ..+.++.++|.|+|++||+++++..+||++++|++|++...|+++++.....
T Consensus       165 ~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~  216 (302)
T TIGR01188       165 DYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLG  216 (302)
T ss_pred             HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHhcC
Confidence            3455555568999999999999999999999999999999999999876654

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.75  E-value=1.9e-08  Score=73.51  Aligned_cols=57  Identities=16%  Similarity=0.212  Sum_probs=48.2

Q ss_pred             hhhhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCce
Q psy18239          5 RCQHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGY   61 (97)
Q Consensus         5 ~~~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~   61 (97)
                      .+.++.++.++ |.|++++|||+..+..+|||+++|.+|+++..|+.+.+++.+...|
T Consensus       468 VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Y  525 (539)
T COG1123         468 VLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPY  525 (539)
T ss_pred             HHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChH
Confidence            34556666654 9999999999999999999999999999999999999877655433

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.75  E-value=3.1e-08  Score=68.78  Aligned_cols=53  Identities=13%  Similarity=0.107  Sum_probs=44.9

Q ss_pred             hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      ..++.++.+ .|.|+|++|||++.+..+||++++|.+|+++..|+++++...+.
T Consensus       193 l~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~~p~  246 (326)
T PRK11022        193 IELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPR  246 (326)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCCC
Confidence            344556554 58999999999999999999999999999999999999876543

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.75  E-value=2.8e-08  Score=66.30  Aligned_cols=47  Identities=17%  Similarity=0.310  Sum_probs=41.8

Q ss_pred             hhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         10 RKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        10 ~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      ..+++. |.|++|+|||++.+..+||+++++.+|++.+.|+++++.+.
T Consensus       189 ~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s  236 (263)
T COG1127         189 RELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS  236 (263)
T ss_pred             HHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence            344443 89999999999999999999999999999999999998763

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.74  E-value=2.2e-08  Score=67.26  Aligned_cols=52  Identities=19%  Similarity=0.324  Sum_probs=46.7

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCc
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVG   60 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~   60 (97)
                      ..+++..|.|||++||.|+.++++||++.+|++|+.+.+|+..++...++..
T Consensus       173 I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk  224 (300)
T COG4152         173 IFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKK  224 (300)
T ss_pred             HHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCc
Confidence            3456677999999999999999999999999999999999999998877643

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.73  E-value=3.2e-08  Score=68.83  Aligned_cols=52  Identities=15%  Similarity=0.155  Sum_probs=44.1

Q ss_pred             hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      ...+.++.+ .+.|+|++|||++.+..+||++++|.+|+++..|+.+++...+
T Consensus       201 ~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~~  253 (331)
T PRK15079        201 VNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNP  253 (331)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCC
Confidence            344555554 4899999999999999999999999999999999999887644

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.73  E-value=1e-07  Score=65.39  Aligned_cols=52  Identities=27%  Similarity=0.282  Sum_probs=44.2

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      ..+.++.++|.|+|++||+++++..+||++++|++|++...|+++++.....
T Consensus       176 ~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~  227 (303)
T TIGR01288       176 ERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQI  227 (303)
T ss_pred             HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhhcC
Confidence            3455555568999999999999999999999999999999999999876543

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.73  E-value=3.1e-08  Score=69.30  Aligned_cols=50  Identities=18%  Similarity=0.307  Sum_probs=43.3

Q ss_pred             hhhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          6 CQHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         6 ~~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      ...++++.++ |.|+|++||+++.+..+||++++|++|++...|++.+++.
T Consensus       180 ~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~  230 (343)
T TIGR02314       180 LELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS  230 (343)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence            4456666554 8999999999999999999999999999999999988764

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.73  E-value=3.6e-08  Score=69.38  Aligned_cols=49  Identities=16%  Similarity=0.189  Sum_probs=42.6

Q ss_pred             hhhhccC--CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          9 SRKNSQT--WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         9 ~~~~~~~--~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      +.++.++  |.|+|++|||++++..+||++++|++|++...|+++++...+
T Consensus       180 l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p  230 (362)
T TIGR03258       180 IAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP  230 (362)
T ss_pred             HHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence            4444444  789999999999999999999999999999999999987654

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.73  E-value=3.3e-08  Score=68.66  Aligned_cols=52  Identities=19%  Similarity=0.158  Sum_probs=44.3

Q ss_pred             hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      +..+.++.+ .|.|+|++|||++.+..+||++++|.+|+++..|+.+++...+
T Consensus       194 ~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~p  246 (327)
T PRK11308        194 LNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNP  246 (327)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCC
Confidence            344556554 4899999999999999999999999999999999999887643

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.72  E-value=1.7e-08  Score=67.32  Aligned_cols=51  Identities=16%  Similarity=0.218  Sum_probs=45.0

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      ..++++++ .|.|++++.|||+.+..+|||+++|+.|+++++|+|+++.+++
T Consensus       190 ~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~dp  241 (250)
T COG0411         190 ELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNP  241 (250)
T ss_pred             HHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcCH
Confidence            44566666 4799999999999999999999999999999999999987654

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.71  E-value=5.2e-08  Score=66.48  Aligned_cols=48  Identities=8%  Similarity=0.085  Sum_probs=42.0

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+..+.+.|.|||++||+++++..+||++++|++|++...|+++++..
T Consensus       186 ~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  233 (288)
T PRK13643        186 LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ  233 (288)
T ss_pred             HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence            344555568999999999999999999999999999999999999764

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.71  E-value=4.5e-08  Score=68.68  Aligned_cols=51  Identities=16%  Similarity=0.183  Sum_probs=43.4

Q ss_pred             hhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          7 QHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         7 ~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      ..+.++.++ +.|+|++|||++++..+||++++|++|++...|++.+++..+
T Consensus       177 ~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p  228 (353)
T PRK10851        177 RWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP  228 (353)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence            334455444 899999999999999999999999999999999999987654

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.71  E-value=4.3e-08  Score=68.75  Aligned_cols=50  Identities=18%  Similarity=0.226  Sum_probs=43.0

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      .++++.+ .+.|+|++||+.+++..+||++++|++|++...|++++++..+
T Consensus       176 ~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p  226 (353)
T TIGR03265       176 EIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP  226 (353)
T ss_pred             HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence            3444444 4899999999999999999999999999999999999987654

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.70  E-value=4.7e-08  Score=68.65  Aligned_cols=50  Identities=16%  Similarity=0.095  Sum_probs=42.9

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      .++++.+ .|.|+|++||+.+++..+||++++|++|++...|++++++..+
T Consensus       176 ~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p  226 (356)
T PRK11650        176 EIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP  226 (356)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence            3444444 3899999999999999999999999999999999999986644

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=5.6e-08  Score=68.16  Aligned_cols=50  Identities=26%  Similarity=0.193  Sum_probs=42.9

Q ss_pred             hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      ++.+.+ .+.|+|++|||.+++..+||++++|++|++...|++++++..+.
T Consensus       179 l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~  229 (351)
T PRK11432        179 IRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA  229 (351)
T ss_pred             HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence            444444 48999999999999999999999999999999999999876543

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.68  E-value=4.9e-08  Score=68.77  Aligned_cols=49  Identities=14%  Similarity=0.209  Sum_probs=42.2

Q ss_pred             hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      +..+.+ .++|+|++||+++++..+||++++|++|++...|+++++...+
T Consensus       172 l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p  221 (363)
T TIGR01186       172 LKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP  221 (363)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence            444443 4899999999999999999999999999999999999986643

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.68  E-value=6.5e-08  Score=66.63  Aligned_cols=49  Identities=10%  Similarity=0.065  Sum_probs=42.4

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .+.++.+.|.|+|++||+++.+..+||++++|++|++...|+++++...
T Consensus       207 ~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~  255 (305)
T PRK13651        207 IFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSD  255 (305)
T ss_pred             HHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence            3445555689999999999999999999999999999999999987653

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.67  E-value=3.7e-08  Score=69.00  Aligned_cols=47  Identities=28%  Similarity=0.392  Sum_probs=42.8

Q ss_pred             ccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcC
Q psy18239         13 SQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAV   59 (97)
Q Consensus        13 ~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~   59 (97)
                      .+.|.|.|++|||-+++..++||+++|++|++...|+|.+++..+..
T Consensus       184 ~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~  230 (352)
T COG3842         184 RELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPAT  230 (352)
T ss_pred             HhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcch
Confidence            34599999999999999999999999999999999999999876643

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.66  E-value=8.1e-08  Score=68.47  Aligned_cols=48  Identities=15%  Similarity=0.235  Sum_probs=41.8

Q ss_pred             hhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239          6 CQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus         6 ~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      ...++++.+++.|+|++||+++++.++||++++|++|++...|+++++
T Consensus       179 ~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev  226 (402)
T PRK09536        179 LELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV  226 (402)
T ss_pred             HHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            344555655689999999999999999999999999999999999975

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.66  E-value=7.8e-08  Score=67.99  Aligned_cols=51  Identities=20%  Similarity=0.268  Sum_probs=43.5

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      .++.+.+ .+.|+|++|||.+++..+||++++|++|++...|++.+++..+.
T Consensus       186 ~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~  237 (375)
T PRK09452        186 ELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK  237 (375)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence            3444444 48999999999999999999999999999999999999876543

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.65  E-value=7.3e-08  Score=68.29  Aligned_cols=48  Identities=17%  Similarity=0.178  Sum_probs=41.9

Q ss_pred             hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +.++.+ .++|+|++||+++++.++||++++|++|++...|+++++...
T Consensus       207 L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~  255 (382)
T TIGR03415       207 LLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN  255 (382)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence            444444 489999999999999999999999999999999999988654

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.63  E-value=6.3e-08  Score=69.03  Aligned_cols=56  Identities=23%  Similarity=0.307  Sum_probs=49.0

Q ss_pred             hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCce
Q psy18239          6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGY   61 (97)
Q Consensus         6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~   61 (97)
                      +.+++.+.+ .|.+.+++|||+..+..+|+++++|.+|++++.|+.++++.++...|
T Consensus       466 v~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~Y  522 (534)
T COG4172         466 LDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEY  522 (534)
T ss_pred             HHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHH
Confidence            456677654 59999999999999999999999999999999999999988776544

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=98.63  E-value=1e-07  Score=66.07  Aligned_cols=49  Identities=18%  Similarity=0.363  Sum_probs=42.1

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .+.++.+ .|.|+|++||+++++..+||++++|++|++...|+++++...
T Consensus       142 ~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~  191 (325)
T TIGR01187       142 ELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE  191 (325)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            3445444 489999999999999999999999999999999999988654

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.63  E-value=3.4e-07  Score=62.85  Aligned_cols=58  Identities=16%  Similarity=0.267  Sum_probs=45.7

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceEEEEEe
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKF   67 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~   67 (97)
                      .+..+.+ +.|||++||+++++..+||++++|++|++...|+.+++..... ...+.+.+
T Consensus       175 ~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~-~~~~~i~~  232 (301)
T TIGR03522       175 VIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAANK-KQVIEVEF  232 (301)
T ss_pred             HHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHhcC-CceEEEEe
Confidence            3444544 6899999999999999999999999999999999999876533 23344444

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.62  E-value=1.1e-07  Score=62.93  Aligned_cols=48  Identities=15%  Similarity=0.070  Sum_probs=41.4

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++.++|.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus       179 ~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  226 (237)
T PRK11614        179 TIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA  226 (237)
T ss_pred             HHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence            344555568999999999999999999999999999999999988753

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.62  E-value=1.2e-07  Score=65.65  Aligned_cols=48  Identities=10%  Similarity=0.084  Sum_probs=41.5

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+..+.++|.|+|++||+++++..+||++++|++|+++..|++++++.
T Consensus       218 ~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~  265 (320)
T PRK13631        218 LILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFT  265 (320)
T ss_pred             HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            344454568999999999999999999999999999999999998754

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.61  E-value=8.4e-08  Score=68.41  Aligned_cols=57  Identities=14%  Similarity=0.121  Sum_probs=49.4

Q ss_pred             hhhhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCce
Q psy18239          5 RCQHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGY   61 (97)
Q Consensus         5 ~~~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~   61 (97)
                      +..+++++.++ |++++++|||+..+.+++||+++|.+|++++.|+.+.++..+...|
T Consensus       196 IL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqHpY  253 (534)
T COG4172         196 ILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPY  253 (534)
T ss_pred             HHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCCChH
Confidence            44567776654 9999999999999999999999999999999999999988766555

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.60  E-value=1.6e-07  Score=62.02  Aligned_cols=48  Identities=21%  Similarity=0.297  Sum_probs=40.9

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.+..+.|.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus       185 ~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  232 (236)
T cd03219         185 LIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN  232 (236)
T ss_pred             HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence            344544468899999999999999999999999999999998887643

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=1.5e-07  Score=64.23  Aligned_cols=49  Identities=16%  Similarity=0.182  Sum_probs=42.0

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      ..+.++.+ .|.|||++||+++++..+|||+++|.+|++...|++.++..
T Consensus       186 ~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  235 (290)
T PRK13634        186 EMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA  235 (290)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            33555544 48999999999999999999999999999999999988754

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=1.8e-07  Score=63.81  Aligned_cols=48  Identities=19%  Similarity=0.271  Sum_probs=41.5

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++.+ .|.|+|++||+++++..+||++++|++|++.+.|+++++..
T Consensus       186 ~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  234 (287)
T PRK13637        186 KIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK  234 (287)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            3445544 48999999999999999999999999999999999998765

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.59  E-value=1.3e-07  Score=66.33  Aligned_cols=51  Identities=20%  Similarity=0.264  Sum_probs=43.6

Q ss_pred             hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      .+.++.++ +.|+|++||+++++..+||++++|++|++...|+++++...+.
T Consensus       170 ~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~  221 (352)
T PRK11144        170 YLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA  221 (352)
T ss_pred             HHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence            34454443 8999999999999999999999999999999999999877654

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.58  E-value=1.7e-07  Score=66.35  Aligned_cols=45  Identities=16%  Similarity=0.286  Sum_probs=40.8

Q ss_pred             cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239         14 QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus        14 ~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      +.|.|+|++|||.+++..+||++++|++|++...|++++++..+.
T Consensus       198 ~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~  242 (377)
T PRK11607        198 RVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT  242 (377)
T ss_pred             hcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence            348999999999999999999999999999999999999876543

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.58  E-value=1.7e-07  Score=66.08  Aligned_cols=49  Identities=14%  Similarity=0.134  Sum_probs=41.9

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .+.++.+ .+.|+|++||+++++..+||++++|++|++...|+++++...
T Consensus       175 ~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~  224 (369)
T PRK11000        175 EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY  224 (369)
T ss_pred             HHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            3445444 489999999999999999999999999999999999987654

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.57  E-value=2.3e-07  Score=62.14  Aligned_cols=48  Identities=6%  Similarity=0.099  Sum_probs=41.4

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++.+.|.++|++||+++++..+||++++|++|+++..|+++++..
T Consensus       194 ~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  241 (257)
T PRK10619        194 IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG  241 (257)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhhh
Confidence            344555568999999999999999999999999999999999888654

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.57  E-value=1.8e-07  Score=60.63  Aligned_cols=47  Identities=19%  Similarity=0.314  Sum_probs=41.6

Q ss_pred             hhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNS-QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      ..++. +++.|++|+||+++++.+++++++++++|++.+.|+.+++..
T Consensus       172 v~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~  219 (231)
T COG3840         172 VSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS  219 (231)
T ss_pred             HHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence            44454 458999999999999999999999999999999999999764

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.57  E-value=2.5e-07  Score=63.11  Aligned_cols=47  Identities=11%  Similarity=0.141  Sum_probs=41.0

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +.++.+.|.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus       188 l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  234 (287)
T PRK13641        188 FKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS  234 (287)
T ss_pred             HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            44454568999999999999999999999999999999999888754

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.57  E-value=2.5e-07  Score=62.74  Aligned_cols=46  Identities=11%  Similarity=0.081  Sum_probs=39.3

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      .+.++.++|.|+|++||+++++..+||++++|++|++...|+++.+
T Consensus       180 ~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  225 (274)
T PRK13647        180 ILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL  225 (274)
T ss_pred             HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence            3444544589999999999999999999999999999999998654

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.56  E-value=2.6e-07  Score=62.59  Aligned_cols=49  Identities=10%  Similarity=0.119  Sum_probs=42.1

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      ..+.++.++|.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus       178 ~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  226 (275)
T PRK13639        178 KLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS  226 (275)
T ss_pred             HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            3345555458999999999999999999999999999999999998754

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.55  E-value=2.2e-07  Score=61.36  Aligned_cols=49  Identities=18%  Similarity=0.296  Sum_probs=41.3

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      ..+.++.+ .+.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus       177 ~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  226 (235)
T cd03261         177 DLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA  226 (235)
T ss_pred             HHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence            33455544 48999999999999999999999999999999999887653

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.55  E-value=2.7e-07  Score=64.46  Aligned_cols=51  Identities=20%  Similarity=0.333  Sum_probs=42.6

Q ss_pred             hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      ...+.++.+ .|.|+|++||+++++..+||++++|++|++...|++.++...
T Consensus       180 ~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~  231 (343)
T PRK11153        180 LELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH  231 (343)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            344555544 489999999999999999999999999999999998887543

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.55  E-value=3.1e-07  Score=60.84  Aligned_cols=48  Identities=17%  Similarity=0.200  Sum_probs=40.9

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.+..+++.|+|++||+++++..+||++++|++|++...|++.++.+
T Consensus       178 ~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  225 (240)
T PRK09493        178 VMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK  225 (240)
T ss_pred             HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence            344444558999999999999999999999999999999998887644

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.55  E-value=2.5e-07  Score=62.98  Aligned_cols=48  Identities=13%  Similarity=0.166  Sum_probs=41.5

Q ss_pred             hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++.++ |.|+|++||+++++..+||++++|++|++.+.|+++++..
T Consensus       183 ~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  231 (283)
T PRK13636        183 LLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA  231 (283)
T ss_pred             HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            34455443 8999999999999999999999999999999999988765

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.55  E-value=2e-07  Score=69.55  Aligned_cols=51  Identities=16%  Similarity=0.186  Sum_probs=43.2

Q ss_pred             hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      ...+.++.+ .|.|+|++|||++.+..+||++++|.+|+++..|+++++...
T Consensus       503 ~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~  554 (623)
T PRK10261        503 INLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFEN  554 (623)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC
Confidence            344555554 489999999999999999999999999999999999988654

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.54  E-value=3.1e-07  Score=62.62  Aligned_cols=49  Identities=14%  Similarity=0.112  Sum_probs=41.9

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .+.++.+ .|.|+|++||+++++..+||++++|++|++...|++.++...
T Consensus       187 ~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  236 (286)
T PRK13646        187 LLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD  236 (286)
T ss_pred             HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            3455543 489999999999999999999999999999999999887653

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.54  E-value=3.1e-07  Score=61.18  Aligned_cols=48  Identities=17%  Similarity=0.164  Sum_probs=41.2

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++.+++.++|++||+++++..+||++++|++|++...|+++++..
T Consensus       186 ~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  233 (250)
T PRK11264        186 TIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA  233 (250)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence            344555558999999999999999999999999999999999888654

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.54  E-value=1.3e-07  Score=62.44  Aligned_cols=63  Identities=16%  Similarity=0.189  Sum_probs=50.3

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH--hhcCceEEEEEeCC
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN--KFAVGYQLQIKFPP   69 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~--~~~~~~~~~~~~~~   69 (97)
                      ...+++..+|..++.+-||++.++.||||+++|.+|++++.|+|++..+  .....|...+.+..
T Consensus       182 ~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~Etl~~vyg~~~~V~~  246 (259)
T COG4559         182 RLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLERVYGADIRVGR  246 (259)
T ss_pred             HHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHHHHHHHhCCceeeee
Confidence            3456677788999999999999999999999999999999999999764  23344444444443

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.53  E-value=3.1e-07  Score=62.33  Aligned_cols=48  Identities=17%  Similarity=0.196  Sum_probs=41.6

Q ss_pred             hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++.++ |.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus       179 ~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  227 (277)
T PRK13652        179 FLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL  227 (277)
T ss_pred             HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence            34555444 8999999999999999999999999999999999998864

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.52  E-value=3.8e-07  Score=61.20  Aligned_cols=47  Identities=6%  Similarity=0.128  Sum_probs=40.2

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +.++.+ +.|+|++||+++++..+||++++|++|++...|+++++...
T Consensus       197 l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  243 (258)
T PRK14268        197 IMNLKK-DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN  243 (258)
T ss_pred             HHHHhh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            444433 68999999999999999999999999999999999887543

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=98.52  E-value=3.2e-07  Score=61.30  Aligned_cols=47  Identities=15%  Similarity=0.106  Sum_probs=40.3

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK   54 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~   54 (97)
                      .+.++.+++.|+|++||+++++..+||++++|++|++...|+.+++.
T Consensus       175 ~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  221 (248)
T PRK03695        175 LLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL  221 (248)
T ss_pred             HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            34455556899999999999999999999999999999999887763

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.52  E-value=3.8e-07  Score=59.67  Aligned_cols=47  Identities=17%  Similarity=0.150  Sum_probs=39.9

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK   54 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~   54 (97)
                      .+.+..+.+.|+|++||+++++..+||++++|++|++...|+++++.
T Consensus       174 ~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  220 (222)
T cd03224         174 AIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL  220 (222)
T ss_pred             HHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence            34445446789999999999999999999999999999998887654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.51  E-value=3.9e-07  Score=63.90  Aligned_cols=51  Identities=20%  Similarity=0.223  Sum_probs=43.2

Q ss_pred             hhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          7 QHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         7 ~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      ..+.++.++ +.|+|++||+++++..+||++++|++|++...|+++++...+
T Consensus       172 ~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  223 (354)
T TIGR02142       172 PYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP  223 (354)
T ss_pred             HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence            345555444 899999999999999999999999999999999999887654

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.51  E-value=4.2e-07  Score=61.38  Aligned_cols=49  Identities=8%  Similarity=0.015  Sum_probs=41.6

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      ..+.++.++|.|+|++||+++++..+||++++|.+|++...|+++++..
T Consensus       177 ~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  225 (271)
T PRK13638        177 AIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA  225 (271)
T ss_pred             HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            3344554458899999999999999999999999999999999888754

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.51  E-value=4.1e-07  Score=59.88  Aligned_cols=47  Identities=11%  Similarity=0.138  Sum_probs=40.3

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK   54 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~   54 (97)
                      .+.+..+.+.|+|++||+++++..+||++++|++|++...|+.+++.
T Consensus       175 ~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  221 (232)
T cd03218         175 IIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA  221 (232)
T ss_pred             HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence            34455556889999999999999999999999999999999887764

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.51  E-value=2.1e-07  Score=62.62  Aligned_cols=52  Identities=12%  Similarity=0.059  Sum_probs=44.2

Q ss_pred             hhhhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          4 DRCQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         4 ~~~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      ....++.+++++|+||+|+|||++.+..++|+++.|++ ++.+.|++++..+.
T Consensus       177 ~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~~~~  228 (254)
T COG1121         177 EIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEVLTE  228 (254)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhccCH
Confidence            34456777777799999999999999999999999975 78999999987653

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.50  E-value=4.5e-07  Score=59.97  Aligned_cols=48  Identities=13%  Similarity=0.185  Sum_probs=40.5

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK   54 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~   54 (97)
                      ..+.++.+ .|.|+|++||+++++..+||++++|++|++...|+++++.
T Consensus       185 ~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  233 (241)
T cd03256         185 DLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT  233 (241)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence            33455544 4899999999999999999999999999999999888763

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.50  E-value=3.6e-07  Score=60.56  Aligned_cols=48  Identities=19%  Similarity=0.289  Sum_probs=40.8

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.+..+ .|.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus       178 ~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  226 (239)
T cd03296         178 WLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD  226 (239)
T ss_pred             HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence            3445544 37899999999999999999999999999999999888753

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.50  E-value=4.4e-07  Score=59.86  Aligned_cols=48  Identities=23%  Similarity=0.352  Sum_probs=40.5

Q ss_pred             hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.+..++ |.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus       182 ~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  230 (233)
T cd03258         182 LLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA  230 (233)
T ss_pred             HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence            34455443 8999999999999999999999999999999998877643

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.50  E-value=3.9e-07  Score=61.02  Aligned_cols=47  Identities=17%  Similarity=0.265  Sum_probs=40.4

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK   54 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~   54 (97)
                      .+.++.+++.|+|++||+++++..+||++++|++|++...|+.+++.
T Consensus       179 ~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  225 (256)
T TIGR03873       179 LVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL  225 (256)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence            34455555789999999999999999999999999999999888763

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.49  E-value=3.6e-07  Score=65.14  Aligned_cols=49  Identities=20%  Similarity=0.276  Sum_probs=41.6

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .+.++.+ .++|+|++||+++++..+||++++|++|++...|+++++...
T Consensus       206 ~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~  255 (400)
T PRK10070        206 ELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN  255 (400)
T ss_pred             HHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence            3444443 489999999999999999999999999999999999887654

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.49  E-value=5e-07  Score=61.26  Aligned_cols=48  Identities=15%  Similarity=0.178  Sum_probs=41.2

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++.+++.|||++||+++++..+||++++|++|++...|+++++..
T Consensus       187 ~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  234 (280)
T PRK13649        187 LFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ  234 (280)
T ss_pred             HHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            344454458999999999999999999999999999999999888754

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.48  E-value=5.1e-07  Score=59.56  Aligned_cols=48  Identities=23%  Similarity=0.210  Sum_probs=41.1

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++.+ .+.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus       167 ~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  215 (230)
T TIGR02770       167 LLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY  215 (230)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            3445544 47899999999999999999999999999999999988754

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.48  E-value=5.6e-07  Score=60.00  Aligned_cols=49  Identities=4%  Similarity=0.081  Sum_probs=41.4

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      ..+.++. ++.|+|++||+++++..+||++++|++|++...|+++++.+.
T Consensus       187 ~~l~~~~-~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~  235 (250)
T PRK14245        187 ELIHELK-KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTN  235 (250)
T ss_pred             HHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence            3344443 368999999999999999999999999999999999988653

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.48  E-value=5.1e-07  Score=61.03  Aligned_cols=47  Identities=21%  Similarity=0.288  Sum_probs=40.4

Q ss_pred             hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +.++.+ .|.|+|++||+++++..+||++++|++|++...|+++++.+
T Consensus       203 l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  250 (269)
T cd03294         203 LLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT  250 (269)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence            444443 47999999999999999999999999999999999888754

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.47  E-value=5.3e-07  Score=60.21  Aligned_cols=48  Identities=13%  Similarity=0.160  Sum_probs=40.9

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.+..+ .|.|+|++||+++++..+||++++|++|++...|+.+++..
T Consensus       188 ~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  236 (252)
T TIGR03005       188 VIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFR  236 (252)
T ss_pred             HHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence            3445444 48999999999999999999999999999999999888754

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.47  E-value=5.9e-07  Score=59.56  Aligned_cols=48  Identities=15%  Similarity=0.207  Sum_probs=41.1

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+..+.++|.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus       179 ~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  226 (241)
T PRK10895        179 IIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ  226 (241)
T ss_pred             HHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence            344555568999999999999999999999999999999999887643

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.47  E-value=3.9e-07  Score=66.67  Aligned_cols=49  Identities=16%  Similarity=0.275  Sum_probs=41.8

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      ..+.++.+ .|.|||++||+++++..+||++++|++|++...|+++++.+
T Consensus       466 ~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  515 (529)
T PRK15134        466 ALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFA  515 (529)
T ss_pred             HHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhc
Confidence            34555544 38999999999999999999999999999999999988754

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.46  E-value=2.4e-07  Score=62.61  Aligned_cols=57  Identities=14%  Similarity=0.191  Sum_probs=48.8

Q ss_pred             hhhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCce
Q psy18239          5 RCQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGY   61 (97)
Q Consensus         5 ~~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~   61 (97)
                      ...++.++++ .|.+.+++|||+..+..+|||+++|..|+++..|+.++++..+...|
T Consensus       148 IlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpY  205 (268)
T COG4608         148 ILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPY  205 (268)
T ss_pred             HHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHH
Confidence            3445666665 49999999999999999999999999999999999999988766555

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.46  E-value=5.9e-07  Score=58.81  Aligned_cols=45  Identities=27%  Similarity=0.396  Sum_probs=38.2

Q ss_pred             hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHH
Q psy18239          8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQH   52 (97)
Q Consensus         8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~   52 (97)
                      .+.++.++ +.++|++||+++++..+||++++|++|++...+++++
T Consensus       173 ~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  218 (220)
T cd03265         173 YIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE  218 (220)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence            34454444 8899999999999999999999999999998887765

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.46  E-value=6.7e-07  Score=59.72  Aligned_cols=49  Identities=12%  Similarity=0.165  Sum_probs=41.1

Q ss_pred             hhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          7 QHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         7 ~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      ..+..+.++ |.|+|++||+++++..+||++++|++|++...|+++++.+
T Consensus       194 ~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~  243 (255)
T PRK11300        194 ELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN  243 (255)
T ss_pred             HHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHhh
Confidence            334455444 8999999999999999999999999999999998887643

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.46  E-value=3.9e-07  Score=59.90  Aligned_cols=45  Identities=16%  Similarity=0.321  Sum_probs=37.9

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQH   52 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~   52 (97)
                      ..+.+..++ .|+|++||+++++..+||++++|++|++...|++++
T Consensus       182 ~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  226 (227)
T cd03260         182 ELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ  226 (227)
T ss_pred             HHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence            345555555 899999999999999999999999999998887654

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.46  E-value=6.3e-07  Score=59.35  Aligned_cols=48  Identities=17%  Similarity=0.140  Sum_probs=40.3

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhh-cCeEEEEeCCEEeEecChHHHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEAL-CTRLAVMVNGRLSCLGSVQHLK   54 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~   54 (97)
                      ..+.+..++|.|+|++||+++.+..+ ||++++|++|++...|+++++.
T Consensus       185 ~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (243)
T TIGR01978       185 EGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK  233 (243)
T ss_pred             HHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence            44555555689999999999999998 8999999999999999887543

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.45  E-value=7.7e-07  Score=59.48  Aligned_cols=48  Identities=13%  Similarity=0.090  Sum_probs=40.9

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .+.++. ++.|+|++||+++++..+||++++|++|++...|++.++...
T Consensus       192 ~l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  239 (254)
T PRK14273        192 LIINLK-ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFN  239 (254)
T ss_pred             HHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            344443 368999999999999999999999999999999999888654

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.45  E-value=8e-07  Score=58.68  Aligned_cols=48  Identities=21%  Similarity=0.311  Sum_probs=40.9

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.+..+ .|.|+|++||+++++..+||++++|.+|++...|+++++..
T Consensus       171 ~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~  219 (232)
T PRK10771        171 LVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS  219 (232)
T ss_pred             HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            3445443 47899999999999999999999999999999999888754

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.45  E-value=6e-07  Score=60.09  Aligned_cols=47  Identities=17%  Similarity=0.286  Sum_probs=40.1

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK   54 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~   54 (97)
                      .+.++.+++.|+|++||+++++..+||++++|++|++...|+.+++.
T Consensus       180 ~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  226 (255)
T PRK11231        180 LMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM  226 (255)
T ss_pred             HHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence            34455455899999999999999999999999999999998887763

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.45  E-value=7e-07  Score=59.97  Aligned_cols=48  Identities=15%  Similarity=0.235  Sum_probs=40.5

Q ss_pred             hhhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNS-QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++. +.+.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus       182 ~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  230 (258)
T PRK13548        182 LARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT  230 (258)
T ss_pred             HHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence            344544 458899999999999999999999999999999998877643

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.44  E-value=6.9e-07  Score=60.33  Aligned_cols=48  Identities=10%  Similarity=0.151  Sum_probs=40.9

Q ss_pred             hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++.++ |.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus       185 ~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  233 (269)
T PRK11831        185 LISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA  233 (269)
T ss_pred             HHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence            34455443 7999999999999999999999999999999999888754

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=98.44  E-value=8.5e-07  Score=59.11  Aligned_cols=47  Identities=11%  Similarity=0.113  Sum_probs=40.2

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +.+..+ +.|+|++||+++++..+||++++|++|++...|++.++.+.
T Consensus       191 l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  237 (252)
T PRK14239        191 LLGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN  237 (252)
T ss_pred             HHHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            444433 58999999999999999999999999999999999887653

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.44  E-value=6e-07  Score=59.51  Aligned_cols=46  Identities=11%  Similarity=0.151  Sum_probs=39.2

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      .+.++.+ .+.|+|++||+++++..+||++++|++|++...|+++++
T Consensus       187 ~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  233 (243)
T TIGR02315       187 YLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL  233 (243)
T ss_pred             HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence            3445443 478999999999999999999999999999999988775

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.44  E-value=7.3e-07  Score=60.07  Aligned_cols=48  Identities=8%  Similarity=0.187  Sum_probs=40.8

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK   54 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~   54 (97)
                      +.+.++.+ .+.|+|++||+++++..+||++++|++|++...|+++++.
T Consensus       184 ~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  232 (265)
T PRK10253        184 ELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV  232 (265)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            34555554 4889999999999999999999999999999999988764

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.44  E-value=8.6e-07  Score=58.77  Aligned_cols=47  Identities=13%  Similarity=0.197  Sum_probs=39.8

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK   54 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~   54 (97)
                      +.+..+.+ +.|+|++||+++++..+||++++|++|++...|+++++.
T Consensus       184 ~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~  230 (242)
T TIGR03411       184 ELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ  230 (242)
T ss_pred             HHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence            33444444 689999999999999999999999999999999888764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.43  E-value=8e-07  Score=59.07  Aligned_cols=47  Identities=11%  Similarity=0.041  Sum_probs=40.6

Q ss_pred             hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +..+.+ .|.|+|++||+++++..+||++++|++|++...|++.++..
T Consensus       174 l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  221 (241)
T PRK14250        174 IVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT  221 (241)
T ss_pred             HHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence            444444 48999999999999999999999999999999999888754

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.43  E-value=2.1e-07  Score=61.48  Aligned_cols=51  Identities=8%  Similarity=0.080  Sum_probs=44.0

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      ++..+++ +.-||++|||+|..|++++|+++++..|++++.|+.+.++.++.
T Consensus       190 eLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~  240 (253)
T COG1117         190 ELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPK  240 (253)
T ss_pred             HHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCcc
Confidence            3444454 45899999999999999999999999999999999999987654

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.43  E-value=9.2e-07  Score=59.30  Aligned_cols=47  Identities=9%  Similarity=0.092  Sum_probs=40.4

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +.++.+ +.|+|++||+++.+..+||++++|++|++...|+++++...
T Consensus       198 l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  244 (259)
T PRK14274        198 ILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN  244 (259)
T ss_pred             HHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhC
Confidence            444443 68999999999999999999999999999999999987653

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.43  E-value=8.4e-07  Score=60.48  Aligned_cols=47  Identities=11%  Similarity=0.163  Sum_probs=40.3

Q ss_pred             hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +.++.+ .+.|+|++||+++++..+||++++|++|++...|++.++..
T Consensus       193 l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  240 (289)
T PRK13645        193 FERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS  240 (289)
T ss_pred             HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            444443 48999999999999999999999999999999999888754

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.43  E-value=8.3e-07  Score=58.42  Aligned_cols=46  Identities=24%  Similarity=0.234  Sum_probs=39.7

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      .+.+..+ .+.|+|++||+++++..+||+++++++|++...|+.+++
T Consensus       173 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~  219 (230)
T TIGR03410       173 VIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL  219 (230)
T ss_pred             HHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence            3445544 379999999999999999999999999999999988776

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.42  E-value=1.2e-06  Score=59.25  Aligned_cols=50  Identities=16%  Similarity=0.295  Sum_probs=42.9

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      .+.+..+.+.|+|++||++.++..+||++++|++|++...|+.+++...+
T Consensus       185 ~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~  234 (264)
T PRK13546        185 KIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKY  234 (264)
T ss_pred             HHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHHh
Confidence            34445556899999999999999999999999999999999998876654

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.42  E-value=9.2e-07  Score=58.73  Aligned_cols=48  Identities=19%  Similarity=0.286  Sum_probs=40.5

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.+..+ .|.++|++||+++++..+||++++|++|++...|+++++..
T Consensus       177 ~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  225 (242)
T cd03295         177 EFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR  225 (242)
T ss_pred             HHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence            3455544 38999999999999999999999999999999998887643

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.42  E-value=1e-06  Score=61.39  Aligned_cols=49  Identities=8%  Similarity=0.055  Sum_probs=41.8

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      +..+.+ +.|+|++||+++.+..+||++++|++|++...|++.++++.+.
T Consensus       268 i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~~  316 (329)
T PRK14257        268 ILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPK  316 (329)
T ss_pred             HHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCC
Confidence            334433 5899999999999999999999999999999999999876433

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.41  E-value=1.2e-06  Score=58.45  Aligned_cols=46  Identities=13%  Similarity=0.104  Sum_probs=39.8

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +.++.+ +.|+|++||+++++..+||++++|++|++...|+++++.+
T Consensus       192 l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  237 (253)
T PRK14267        192 LFELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFE  237 (253)
T ss_pred             HHHHhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence            444433 5899999999999999999999999999999999988754

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.41  E-value=9.8e-07  Score=58.91  Aligned_cols=48  Identities=8%  Similarity=0.084  Sum_probs=40.7

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .+.++.+ +.|+|++||+++++..+||++++|++|++...|+++++...
T Consensus       190 ~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  237 (252)
T PRK14256        190 LIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTT  237 (252)
T ss_pred             HHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            3444444 58999999999999999999999999999999999887653

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.41  E-value=7.9e-07  Score=59.90  Aligned_cols=48  Identities=25%  Similarity=0.296  Sum_probs=40.9

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++.+ .|.|+|++||+++.+..+||++++|++|++...|+++++..
T Consensus       192 ~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  240 (265)
T TIGR02769       192 LLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS  240 (265)
T ss_pred             HHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence            3444444 38999999999999999999999999999999999988753

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.41  E-value=8.9e-07  Score=59.35  Aligned_cols=47  Identities=21%  Similarity=0.224  Sum_probs=40.3

Q ss_pred             hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +....+ .|.|+|++||+++.+..+||++++|++|++...|+++++..
T Consensus       194 l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~  241 (258)
T PRK11701        194 LRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLD  241 (258)
T ss_pred             HHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence            444444 38999999999999999999999999999999999888754

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.41  E-value=1.1e-06  Score=58.56  Aligned_cols=47  Identities=13%  Similarity=0.219  Sum_probs=40.3

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +.+.. ++.|+|++||+++++..+||++++|++|++...|+++++.+.
T Consensus       192 l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  238 (251)
T PRK14244        192 IQELK-KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN  238 (251)
T ss_pred             HHHHh-cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcC
Confidence            44443 379999999999999999999999999999999998887653

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.40  E-value=4.5e-07  Score=60.52  Aligned_cols=51  Identities=14%  Similarity=0.156  Sum_probs=44.1

Q ss_pred             hhhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          5 RCQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         5 ~~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      -+..++++++ +|.|+|++.|+++.+.+||||++-|.+|+++++|+++++..
T Consensus       186 Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~  237 (258)
T COG3638         186 VMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD  237 (258)
T ss_pred             HHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhH
Confidence            3455666654 59999999999999999999999999999999999988643

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.40  E-value=5e-07  Score=67.46  Aligned_cols=50  Identities=16%  Similarity=0.172  Sum_probs=42.4

Q ss_pred             hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++.+.+ .|.|+|++||+++++..+||++++|++|+++..|++.++..
T Consensus       208 ~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~  258 (623)
T PRK10261        208 LQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFH  258 (623)
T ss_pred             HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc
Confidence            344556554 48999999999999999999999999999999999888754

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.40  E-value=3.2e-07  Score=60.13  Aligned_cols=51  Identities=10%  Similarity=0.136  Sum_probs=45.1

Q ss_pred             hhhhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          5 RCQHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         5 ~~~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .++.++.+.++ |+|+++|-||+++|..|+|+++-|.+|+++..|+++++.+
T Consensus       174 iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~  225 (252)
T COG4604         174 IMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ  225 (252)
T ss_pred             HHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence            45666666654 9999999999999999999999999999999999999865

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.40  E-value=5.3e-07  Score=62.98  Aligned_cols=52  Identities=19%  Similarity=0.149  Sum_probs=45.7

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceEEEEE
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIK   66 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~   66 (97)
                      .+.|+|.+|||-.+|..++||+.+|++|++...|+|.+++.++.+.+.-.+.
T Consensus       183 l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~fVA~Fi  234 (338)
T COG3839         183 LGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFVAGFI  234 (338)
T ss_pred             cCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchhhhhhc
Confidence            4899999999999999999999999999999999999999887765544433

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.40  E-value=1e-06  Score=58.76  Aligned_cols=46  Identities=9%  Similarity=0.147  Sum_probs=39.5

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +.++.+ +.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus       192 l~~~~~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  237 (253)
T PRK14242        192 IHELKA-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFT  237 (253)
T ss_pred             HHHHhc-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence            444433 6899999999999999999999999999999999888754

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.40  E-value=8.5e-07  Score=59.83  Aligned_cols=49  Identities=16%  Similarity=0.134  Sum_probs=41.4

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +.+.++.+ .|.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus       190 ~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  239 (267)
T PRK15112        190 NLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA  239 (267)
T ss_pred             HHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhc
Confidence            34555544 48999999999999999999999999999999998888754

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.40  E-value=7.9e-07  Score=58.32  Aligned_cols=46  Identities=20%  Similarity=0.273  Sum_probs=38.6

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQH   52 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~   52 (97)
                      ..+.++.+++.++|++||+++++..+||++++|.+|++...|++.+
T Consensus       165 ~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~  210 (223)
T TIGR03740       165 ELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK  210 (223)
T ss_pred             HHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence            3344555558899999999999999999999999999999887653

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.40  E-value=1.2e-06  Score=59.01  Aligned_cols=48  Identities=13%  Similarity=0.137  Sum_probs=40.5

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .+.++.+ +.|+|++||+++++..+||++++|++|++...|+++++.+.
T Consensus       206 ~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~  253 (268)
T PRK14248        206 LITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS  253 (268)
T ss_pred             HHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            3444433 58999999999999999999999999999999998887653

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.39  E-value=1.1e-06  Score=59.78  Aligned_cols=49  Identities=18%  Similarity=0.246  Sum_probs=40.6

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      ..+.++.+ .|.|+|++||+++++. +||++++|++|++...|++.++...
T Consensus       181 ~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~~~~~~  230 (279)
T PRK13650        181 KTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELFSR  230 (279)
T ss_pred             HHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHcC
Confidence            34555554 4899999999999985 7999999999999999999887543

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.39  E-value=1.1e-06  Score=59.11  Aligned_cols=48  Identities=15%  Similarity=0.174  Sum_probs=41.1

Q ss_pred             hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeC-----CEEeEecChHHHHHh
Q psy18239          9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVN-----GRLSCLGSVQHLKNK   56 (97)
Q Consensus         9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~-----G~i~~~g~~~~l~~~   56 (97)
                      +.++.. .+.|+|++||+++++..+||++++|++     |+++..|+++++...
T Consensus       193 l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~  246 (261)
T PRK14258        193 IQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNS  246 (261)
T ss_pred             HHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHHhC
Confidence            444433 479999999999999999999999999     999999999998653

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.39  E-value=1e-06  Score=57.98  Aligned_cols=47  Identities=21%  Similarity=0.295  Sum_probs=39.4

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.+..+++.|+|++||+++++..+||+++++ +|++...|+.+++..
T Consensus       155 ~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~  201 (223)
T TIGR03771       155 LFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD  201 (223)
T ss_pred             HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence            34445456899999999999999999999999 799999998887643

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.39  E-value=1.1e-06  Score=58.74  Aligned_cols=48  Identities=25%  Similarity=0.246  Sum_probs=41.0

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++.+ .|.|+|++||+++++..+||++++|++|++...|+++++.+
T Consensus       182 ~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  230 (254)
T PRK10418        182 LLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN  230 (254)
T ss_pred             HHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence            3444444 48999999999999999999999999999999999988754

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.39  E-value=1.3e-06  Score=58.22  Aligned_cols=46  Identities=9%  Similarity=0.100  Sum_probs=39.7

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +.+..+ +.|+|++||+++++..+||++++|++|++...|+++++.+
T Consensus       189 l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  234 (250)
T PRK14247        189 FLELKK-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT  234 (250)
T ss_pred             HHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHc
Confidence            444433 7899999999999999999999999999999999988754

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.38  E-value=1.2e-06  Score=58.99  Aligned_cols=48  Identities=15%  Similarity=0.208  Sum_probs=40.4

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK   54 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~   54 (97)
                      ..+.++.+ .+.|+|++||+++++..+||++++|++|++...|+.+++.
T Consensus       188 ~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~  236 (265)
T PRK10575        188 ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM  236 (265)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence            34555544 3899999999999999999999999999999999887764

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.38  E-value=1.5e-06  Score=57.85  Aligned_cols=46  Identities=11%  Similarity=0.224  Sum_probs=39.6

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +.++.+ +.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus       187 l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  232 (247)
T TIGR00972       187 IQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT  232 (247)
T ss_pred             HHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            444444 4899999999999999999999999999999999888754

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.38  E-value=1.3e-06  Score=59.21  Aligned_cols=47  Identities=19%  Similarity=0.214  Sum_probs=39.9

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++.++|.|+|++||+++++. .||++++|++|++...|+++++..
T Consensus       178 ~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~  224 (274)
T PRK13644        178 RIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVLS  224 (274)
T ss_pred             HHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHHhc
Confidence            34455556899999999999985 599999999999999999988754

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.38  E-value=1.7e-06  Score=57.69  Aligned_cols=46  Identities=9%  Similarity=0.120  Sum_probs=39.8

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +++..+ +.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus       191 l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  236 (252)
T PRK14272        191 MTDLKK-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT  236 (252)
T ss_pred             HHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            444433 6899999999999999999999999999999999988754

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=98.37  E-value=1.4e-06  Score=58.91  Aligned_cols=47  Identities=9%  Similarity=0.163  Sum_probs=40.2

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +.+..+ +.|+|++||+++++..+||++++|++|++...|++.++.+.
T Consensus       210 l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~  256 (271)
T PRK14238        210 VQELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSN  256 (271)
T ss_pred             HHHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence            444444 68999999999999999999999999999999998887543

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.37  E-value=1.4e-06  Score=57.72  Aligned_cols=49  Identities=22%  Similarity=0.335  Sum_probs=41.4

Q ss_pred             hhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          7 QHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         7 ~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +.+.+..++ ++|+|++||+++++..+||++++|++|++...|+.+++.+
T Consensus       171 ~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~  220 (237)
T TIGR00968       171 SWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD  220 (237)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence            334444444 7999999999999999999999999999999999888754

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.37  E-value=1.5e-06  Score=57.98  Aligned_cols=48  Identities=6%  Similarity=0.052  Sum_probs=40.6

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .+.+..+ +.++|++||+++++..+||++++|++|++...|+++++...
T Consensus       189 ~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~  236 (251)
T PRK14270        189 LMVELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLE  236 (251)
T ss_pred             HHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcC
Confidence            3444444 58999999999999999999999999999999999887543

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.36  E-value=1.7e-06  Score=63.63  Aligned_cols=50  Identities=12%  Similarity=0.282  Sum_probs=42.5

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      .+.++.++|.|+|++||+++++..+||++++|.+|++...|+++++...+
T Consensus       185 lL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~  234 (549)
T PRK13545        185 KMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHY  234 (549)
T ss_pred             HHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence            34445556899999999999999999999999999999999998876543

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.36  E-value=1.9e-06  Score=57.02  Aligned_cols=47  Identities=15%  Similarity=0.104  Sum_probs=39.2

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .+.+.. +|.++|++||+++++. +||++++|++|++...++.+++...
T Consensus       181 ~l~~~~-~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~  227 (238)
T cd03249         181 ALDRAM-KGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDELMAQ  227 (238)
T ss_pred             HHHHhc-CCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHHhhc
Confidence            344444 5899999999999997 7999999999999999988776543

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.36  E-value=1.9e-06  Score=57.43  Aligned_cols=46  Identities=13%  Similarity=0.154  Sum_probs=39.8

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +.+..+ +.|+|++||+++++..+||++++|++|++...|+..++..
T Consensus       185 l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  230 (246)
T PRK14269        185 LKELSH-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE  230 (246)
T ss_pred             HHHHhC-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence            334433 7899999999999999999999999999999999888754

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.36  E-value=1.2e-06  Score=59.47  Aligned_cols=47  Identities=11%  Similarity=0.166  Sum_probs=40.0

Q ss_pred             hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239          8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK   54 (97)
Q Consensus         8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~   54 (97)
                      .+.++.++ +.|+|++||+++++..+||++++|.+|++...|+++++.
T Consensus       196 ~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  243 (272)
T PRK13547        196 TVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL  243 (272)
T ss_pred             HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHHc
Confidence            34454444 899999999999999999999999999999999887763

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=98.36  E-value=1.8e-06  Score=57.55  Aligned_cols=47  Identities=11%  Similarity=0.209  Sum_probs=40.1

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +.+.. ++.|+|++||+++.+..+||++++|++|++...|+++++...
T Consensus       189 l~~~~-~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~  235 (250)
T PRK14240        189 IQELK-KDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN  235 (250)
T ss_pred             HHHHh-cCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            44443 368999999999999999999999999999999998887543

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.36  E-value=1.5e-06  Score=63.49  Aligned_cols=48  Identities=17%  Similarity=0.302  Sum_probs=40.9

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++.+ .|.|+|++||+++++..+||++++|.+|++...|+++++..
T Consensus       469 ~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  517 (520)
T TIGR03269       469 SILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE  517 (520)
T ss_pred             HHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            3445544 48999999999999999999999999999999999887754

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.36  E-value=7.2e-07  Score=65.00  Aligned_cols=47  Identities=23%  Similarity=0.176  Sum_probs=39.8

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      ..+.++.++|.|||++||+++++..+||++++|.+|++...++++++
T Consensus       446 ~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~  492 (506)
T PRK13549        446 KLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL  492 (506)
T ss_pred             HHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence            34455555689999999999999999999999999999988877654

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.36  E-value=1.5e-06  Score=58.03  Aligned_cols=47  Identities=21%  Similarity=0.214  Sum_probs=40.1

Q ss_pred             hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +.+..+ .+.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus       191 l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~  238 (253)
T TIGR02323       191 LRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLD  238 (253)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhc
Confidence            444433 48999999999999999999999999999999999887754

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.35  E-value=1.9e-06  Score=57.39  Aligned_cols=47  Identities=13%  Similarity=0.131  Sum_probs=39.9

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++.+ +.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus       187 ~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  233 (249)
T PRK14253        187 LMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS  233 (249)
T ss_pred             HHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence            3444444 5899999999999999999999999999999999887643

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.35  E-value=1.8e-06  Score=57.25  Aligned_cols=45  Identities=20%  Similarity=0.238  Sum_probs=38.9

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      +.++.+++.|+|++||+++++..+||++++|.+|++...|+++++
T Consensus       184 l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  228 (242)
T PRK11124        184 IRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF  228 (242)
T ss_pred             HHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence            444445689999999999999999999999999999999887764

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.35  E-value=1.3e-06  Score=63.93  Aligned_cols=48  Identities=25%  Similarity=0.216  Sum_probs=40.8

Q ss_pred             hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++.++ |.|+|++||+++.+..+||++++|++|++...|+++++..
T Consensus       198 ~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  246 (529)
T PRK15134        198 LLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFS  246 (529)
T ss_pred             HHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHHhh
Confidence            34555443 8999999999999999999999999999999998887643

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.35  E-value=1.6e-06  Score=58.24  Aligned_cols=46  Identities=20%  Similarity=0.265  Sum_probs=39.5

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      .+..+.+ .|.|+|++||+++++..+||++++|++|++...|+++++
T Consensus       194 ~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~  240 (262)
T PRK09984        194 TLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF  240 (262)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence            3445543 479999999999999999999999999999999998775

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.35  E-value=2e-06  Score=57.40  Aligned_cols=40  Identities=18%  Similarity=0.274  Sum_probs=37.1

Q ss_pred             CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239         16 WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus        16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus       196 ~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  235 (251)
T PRK14251        196 QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFI  235 (251)
T ss_pred             CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHh
Confidence            6899999999999999999999999999999999988754

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.34  E-value=2e-06  Score=57.71  Aligned_cols=47  Identities=11%  Similarity=0.067  Sum_probs=40.0

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++. .+.|+|++||+++++..+||++++|++|++...|+.+++..
T Consensus       198 ~L~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  244 (260)
T PRK10744        198 LITELK-QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFT  244 (260)
T ss_pred             HHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            344443 36899999999999999999999999999999999888754

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.34  E-value=2.3e-06  Score=57.05  Aligned_cols=46  Identities=13%  Similarity=0.185  Sum_probs=39.6

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +.+..+ +.|+|++||+++.+..+||++++|++|++...|+++++.+
T Consensus       189 l~~~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  234 (250)
T PRK14262        189 LEELSE-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE  234 (250)
T ss_pred             HHHHhc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence            334433 6899999999999999999999999999999999988754

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.34  E-value=1.4e-06  Score=63.66  Aligned_cols=46  Identities=22%  Similarity=0.309  Sum_probs=40.0

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      .+.++.++|.+||++||+++++..+||++++|++|++...|++.++
T Consensus       182 ~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~  227 (510)
T PRK15439        182 RIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL  227 (510)
T ss_pred             HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence            3455555689999999999999999999999999999999988765

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.33  E-value=2.3e-06  Score=56.72  Aligned_cols=47  Identities=23%  Similarity=0.302  Sum_probs=40.1

Q ss_pred             hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +.++.. .+.|+|++||+++++..+||++++|++|++...|++.++.+
T Consensus       172 l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  219 (235)
T cd03299         172 LKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK  219 (235)
T ss_pred             HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence            444444 38999999999999999999999999999999998887654

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.33  E-value=7e-07  Score=57.96  Aligned_cols=50  Identities=4%  Similarity=0.064  Sum_probs=45.3

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      .+++.++|+|.+++||.|.++...+++++++.+|.+-..|+|++++.++.
T Consensus       195 ~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~nP~  244 (256)
T COG4598         195 MQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQ  244 (256)
T ss_pred             HHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhcCCC
Confidence            35567789999999999999999999999999999999999999987654

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.33  E-value=2.4e-06  Score=57.00  Aligned_cols=42  Identities=7%  Similarity=0.188  Sum_probs=38.5

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      ++.|+|++||+++++..+||++++|++|++...|+++++...
T Consensus       195 ~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  236 (251)
T PRK14249        195 QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR  236 (251)
T ss_pred             cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhC
Confidence            478999999999999999999999999999999999887654

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.32  E-value=1.8e-06  Score=62.68  Aligned_cols=48  Identities=15%  Similarity=0.158  Sum_probs=40.8

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK   54 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~   54 (97)
                      ..+.++.++|.|+|++||+++.+..+||++++|++|++...|+++++.
T Consensus       176 ~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  223 (490)
T PRK10938        176 ELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL  223 (490)
T ss_pred             HHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence            334555556899999999999999999999999999999999887754

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.32  E-value=1.7e-06  Score=57.10  Aligned_cols=47  Identities=21%  Similarity=0.371  Sum_probs=40.0

Q ss_pred             hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +.+..+ .|.|+|++||+++++..+||++++|++|++...|+..++..
T Consensus       173 l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~  220 (232)
T cd03300         173 LKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE  220 (232)
T ss_pred             HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence            444444 38999999999999999999999999999999998877654

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.32  E-value=2.5e-06  Score=57.43  Aligned_cols=46  Identities=11%  Similarity=0.119  Sum_probs=39.7

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +.++.+ +.|+|++||+++++..+||++++|++|++...|+..++..
T Consensus       204 l~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  249 (265)
T PRK14252        204 ISDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFI  249 (265)
T ss_pred             HHHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            444433 5899999999999999999999999999999999988764

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.31  E-value=1.1e-06  Score=64.13  Aligned_cols=47  Identities=26%  Similarity=0.249  Sum_probs=39.9

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      ..+.++.++|.|+|++|||++++..+||++++|.+|++...++++++
T Consensus       444 ~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~  490 (510)
T PRK15439        444 QLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI  490 (510)
T ss_pred             HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence            34555555689999999999999999999999999999998877654

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.31  E-value=2.8e-06  Score=57.34  Aligned_cols=46  Identities=15%  Similarity=0.184  Sum_probs=39.6

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +.++.+ +.|+|++||+++.+..+||++++|++|++...|+++++..
T Consensus       206 L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  251 (267)
T PRK14235        206 IDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFT  251 (267)
T ss_pred             HHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence            444443 6899999999999999999999999999999999888754

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=98.31  E-value=2.2e-06  Score=58.02  Aligned_cols=47  Identities=13%  Similarity=0.129  Sum_probs=39.9

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++.+ +.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus       210 ~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  256 (272)
T PRK14236        210 LITELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFT  256 (272)
T ss_pred             HHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhc
Confidence            3444444 6899999999999999999999999999999999888754

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.30  E-value=1.6e-06  Score=56.32  Aligned_cols=41  Identities=17%  Similarity=0.162  Sum_probs=34.3

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG   48 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g   48 (97)
                      .+.+..+++.++|++||+++++..+||++++|++|++...|
T Consensus       168 ~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         168 LILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             HHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence            34444446899999999999999999999999999987653

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.30  E-value=2.8e-06  Score=57.32  Aligned_cols=46  Identities=7%  Similarity=-0.001  Sum_probs=39.8

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +.++. ++.++|++||+++++..+||++++|++|++...|++.++..
T Consensus       206 l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  251 (267)
T PRK14237        206 MFELK-KNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFT  251 (267)
T ss_pred             HHHHh-cCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence            44443 36899999999999999999999999999999999988754

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.30  E-value=3.1e-06  Score=57.71  Aligned_cols=46  Identities=7%  Similarity=0.039  Sum_probs=39.6

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +.+..+ +.++|++||+++++..+||++++|++|++...|++.++.+
T Consensus       225 L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~  270 (286)
T PRK14275        225 IQELRG-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFT  270 (286)
T ss_pred             HHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            444433 5899999999999999999999999999999999888755

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.30  E-value=1.4e-06  Score=63.37  Aligned_cols=47  Identities=17%  Similarity=0.152  Sum_probs=40.0

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      ..+.++.+.|.|+|++|||++++..+||++++|.+|++...|++.+.
T Consensus       437 ~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~  483 (501)
T PRK11288        437 NVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQA  483 (501)
T ss_pred             HHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccC
Confidence            34455566689999999999999999999999999999998877653

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.30  E-value=1.8e-06  Score=63.00  Aligned_cols=47  Identities=21%  Similarity=0.326  Sum_probs=40.1

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      ..+.++.++|.|+|++||+++++..+||++++|++|++...|+++++
T Consensus       186 ~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  232 (510)
T PRK09700        186 LIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV  232 (510)
T ss_pred             HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence            34455555689999999999999999999999999999998887764

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.30  E-value=3.1e-06  Score=57.50  Aligned_cols=47  Identities=19%  Similarity=0.299  Sum_probs=40.3

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++.+ +.|+|++||+++++..+||++++|++|++...|+++++.+
T Consensus       205 ~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  251 (276)
T PRK14271        205 FIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS  251 (276)
T ss_pred             HHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            3444444 4899999999999999999999999999999999988755

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.30  E-value=2.1e-06  Score=58.33  Aligned_cols=47  Identities=19%  Similarity=0.258  Sum_probs=40.1

Q ss_pred             hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +.++.+ .|.|+|++||+++++.. ||++++|++|++...|+++++...
T Consensus       187 l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~~  234 (280)
T PRK13633        187 IKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKE  234 (280)
T ss_pred             HHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHhcC
Confidence            444544 48999999999999986 999999999999999999988654

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.30  E-value=2.4e-06  Score=58.16  Aligned_cols=47  Identities=17%  Similarity=0.248  Sum_probs=39.5

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++.+ .|.|+|++||+++++. +||++++|.+|++...|+++++..
T Consensus       185 ~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~  232 (282)
T PRK13640        185 LIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEIFS  232 (282)
T ss_pred             HHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHHhc
Confidence            3445544 4899999999999985 799999999999999999988754

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.30  E-value=2.9e-06  Score=56.63  Aligned_cols=47  Identities=11%  Similarity=0.131  Sum_probs=40.1

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +.++.+ +.|+|++||+++++..+||++++|++|++...|++.++...
T Consensus       191 l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  237 (252)
T PRK14255        191 LLELRD-QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLN  237 (252)
T ss_pred             HHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            444443 48999999999999999999999999999999999887653

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.29  E-value=3e-06  Score=57.67  Aligned_cols=41  Identities=22%  Similarity=0.262  Sum_probs=37.3

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .++|+|++||+++.+.. ||++++|++|++...|+++++...
T Consensus       186 ~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~~~  226 (275)
T cd03289         186 ADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLNE  226 (275)
T ss_pred             CCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHhhC
Confidence            47999999999998875 999999999999999999998763

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.27  E-value=2.3e-06  Score=55.82  Aligned_cols=41  Identities=24%  Similarity=0.315  Sum_probs=34.3

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG   48 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g   48 (97)
                      .+.+..+++.|+|++||+++++..+||++++|++|++...|
T Consensus       178 ~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         178 FIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             HHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence            34455455899999999999999999999999999987643

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=98.27  E-value=2.6e-06  Score=55.92  Aligned_cols=53  Identities=17%  Similarity=0.241  Sum_probs=45.7

Q ss_pred             hhhh-hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          5 RCQH-SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         5 ~~~~-~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      +|+. ...+++.|..|+++-||..+...+|||.+++.+|++.+.|+++++.++.
T Consensus       177 dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~  230 (243)
T COG1137         177 DIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE  230 (243)
T ss_pred             HHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence            4444 3446667999999999999999999999999999999999999987654

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.27  E-value=3.6e-06  Score=56.21  Aligned_cols=46  Identities=7%  Similarity=0.071  Sum_probs=39.5

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +..+.+ +.|+|++||+++++..+||++++|++|++...|+++++..
T Consensus       192 l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  237 (253)
T PRK14261        192 IEDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE  237 (253)
T ss_pred             HHHHhh-CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHh
Confidence            334433 5899999999999999999999999999999999988754

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.27  E-value=3e-06  Score=55.84  Aligned_cols=47  Identities=15%  Similarity=0.129  Sum_probs=39.3

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      +.++. ++.++|++||+++++.. ||++++|++|++...++++++....
T Consensus       181 l~~~~-~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~  227 (234)
T cd03251         181 LERLM-KNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLAQG  227 (234)
T ss_pred             HHHhc-CCCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHHHHcC
Confidence            44444 37899999999999976 9999999999999999988876543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.26  E-value=2.3e-06  Score=55.64  Aligned_cols=41  Identities=20%  Similarity=0.239  Sum_probs=34.5

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG   48 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g   48 (97)
                      .+.++.+ .+.|+|++||+++++..+||++++|++|++...|
T Consensus       172 ~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         172 ELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence            3445544 4899999999999999999999999999988764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.26  E-value=3.4e-06  Score=57.33  Aligned_cols=48  Identities=19%  Similarity=0.235  Sum_probs=40.2

Q ss_pred             hhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          7 QHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         7 ~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      ..+.++.++ |.|+|++||+++++.. ||++++|.+|++.+.|+++++..
T Consensus       181 ~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~  229 (279)
T PRK13635        181 ETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFK  229 (279)
T ss_pred             HHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHhc
Confidence            345555544 8999999999999975 99999999999999999888754

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.26  E-value=1.6e-06  Score=57.28  Aligned_cols=45  Identities=13%  Similarity=0.251  Sum_probs=37.5

Q ss_pred             hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239          9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus         9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      +.+..+ .|.|+|++||+++++..+||++++|++|++...|+...+
T Consensus       157 l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  202 (230)
T TIGR01184       157 LMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV  202 (230)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence            444444 488999999999999999999999999999988866544

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.26  E-value=2.3e-06  Score=55.67  Aligned_cols=42  Identities=29%  Similarity=0.320  Sum_probs=34.4

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG   48 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g   48 (97)
                      ..+.+..+ .|.++|++||+++++..+||++++|++|++...|
T Consensus       171 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         171 EELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             HHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            33445444 4899999999999999999999999999987654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.26  E-value=3.5e-06  Score=55.06  Aligned_cols=44  Identities=41%  Similarity=0.619  Sum_probs=37.2

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      +.+..+ +.|+|++||+++.+..+||++++|++|++...|+++++
T Consensus       176 l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  219 (220)
T cd03263         176 ILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL  219 (220)
T ss_pred             HHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence            344444 48999999999999999999999999999998887653

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.26  E-value=1.7e-06  Score=63.03  Aligned_cols=47  Identities=17%  Similarity=0.163  Sum_probs=39.6

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      ..+.++.++|.++|++||+++++..+||++++|++|++...|+++++
T Consensus       184 ~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  230 (506)
T PRK13549        184 DIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM  230 (506)
T ss_pred             HHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence            34445555689999999999999999999999999999998877654

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.26  E-value=3.8e-06  Score=55.80  Aligned_cols=51  Identities=16%  Similarity=0.146  Sum_probs=44.7

Q ss_pred             hhhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          6 CQHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         6 ~~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      ....++++++ |.||++|.++...+..++||.++|.+|+++..|+.+++...
T Consensus       176 ~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~  227 (237)
T COG0410         176 FEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD  227 (237)
T ss_pred             HHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence            3446667754 78999999999999999999999999999999999998764

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.26  E-value=2.8e-06  Score=61.71  Aligned_cols=46  Identities=17%  Similarity=0.242  Sum_probs=39.6

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      .+.++.+.|.|+|++||+++++..+||++++|++|++...|+++++
T Consensus       176 ~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  221 (491)
T PRK10982        176 IIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL  221 (491)
T ss_pred             HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence            3555555689999999999999999999999999999999887664

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.25  E-value=2.4e-06  Score=56.02  Aligned_cols=41  Identities=20%  Similarity=0.256  Sum_probs=33.9

Q ss_pred             hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239          8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLG   48 (97)
Q Consensus         8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g   48 (97)
                      .+.+..++ |.|+|++||+++++..+||++++|++|++...|
T Consensus       187 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         187 LLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence            34444444 799999999999999999999999999987543

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=98.25  E-value=3.4e-06  Score=56.21  Aligned_cols=44  Identities=18%  Similarity=0.067  Sum_probs=37.7

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhh-cCeEEEEeCCEEeEecChHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEAL-CTRLAVMVNGRLSCLGSVQH   52 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~-~d~i~~l~~G~i~~~g~~~~   52 (97)
                      +.++.++|.|+|++||+++.+..+ ||++++|++|++...|+++.
T Consensus       194 l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~  238 (252)
T CHL00131        194 INKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAEL  238 (252)
T ss_pred             HHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhh
Confidence            444545589999999999999887 89999999999999998874

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.25  E-value=5.3e-06  Score=55.13  Aligned_cols=45  Identities=13%  Similarity=0.067  Sum_probs=38.5

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhh-cCeEEEEeCCEEeEecChHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEAL-CTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~-~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      +..+.+.+.|+|++||+++.+..+ ||++++|++|++...|+++..
T Consensus       188 l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~  233 (248)
T PRK09580        188 VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV  233 (248)
T ss_pred             HHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence            445555578999999999999887 899999999999999988754

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.25  E-value=4.7e-06  Score=56.03  Aligned_cols=47  Identities=15%  Similarity=0.167  Sum_probs=40.1

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +.++.+ +.|+|++||+++.+..+||++++|++|++...|+.+++...
T Consensus       196 l~~~~~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~  242 (257)
T PRK14246        196 ITELKN-EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS  242 (257)
T ss_pred             HHHHhc-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            334433 58999999999999999999999999999999999887653

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.25  E-value=1.9e-06  Score=62.79  Aligned_cols=47  Identities=23%  Similarity=0.190  Sum_probs=39.8

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      ..+.++.++|.|+|++|||++++..+||++++|++|++...++++++
T Consensus       436 ~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~  482 (501)
T PRK10762        436 QLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA  482 (501)
T ss_pred             HHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence            34555555689999999999999999999999999999988877664

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.25  E-value=4.6e-06  Score=55.19  Aligned_cols=48  Identities=27%  Similarity=0.298  Sum_probs=40.1

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .+.++.+ +|.|+|++||+++++.. ||++++|++|++...++++++...
T Consensus       174 ~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~  222 (236)
T TIGR03864       174 HVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRGA  222 (236)
T ss_pred             HHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHHH
Confidence            3445543 48999999999999975 999999999999999998887654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.24  E-value=3.1e-06  Score=57.15  Aligned_cols=48  Identities=19%  Similarity=0.161  Sum_probs=40.0

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .+.++.+ .|.|+|++||+++++.. ||++++|++|++...|+++++...
T Consensus       184 ~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~~  232 (269)
T PRK13648        184 LVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFDH  232 (269)
T ss_pred             HHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHhcC
Confidence            3445544 48999999999999986 999999999999999999887553

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.24  E-value=3.1e-06  Score=57.15  Aligned_cols=46  Identities=24%  Similarity=0.221  Sum_probs=39.7

Q ss_pred             hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239          9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK   54 (97)
Q Consensus         9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~   54 (97)
                      +.+..+ .+.|+|++||+++++..+||++++|++|++...|+++++.
T Consensus       194 l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~  240 (268)
T PRK10419        194 LKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKL  240 (268)
T ss_pred             HHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence            444444 3789999999999999999999999999999999888764

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.24  E-value=5.6e-06  Score=54.70  Aligned_cols=46  Identities=20%  Similarity=0.183  Sum_probs=38.8

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +.++. +|.|+|++||+++++. .||++++|.+|++...|+++++...
T Consensus       181 l~~~~-~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~  226 (237)
T cd03252         181 MHDIC-AGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELLAE  226 (237)
T ss_pred             HHHhc-CCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHHHhc
Confidence            44444 3789999999999986 5999999999999999998887654

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.24  E-value=2.2e-06  Score=55.58  Aligned_cols=39  Identities=15%  Similarity=0.226  Sum_probs=32.6

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEe
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLS   45 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~   45 (97)
                      ..+.+..+++.++|++||+++++..+||++++|++|+++
T Consensus       167 ~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         167 ELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            334555456899999999999999999999999999863

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.24  E-value=5.1e-06  Score=55.36  Aligned_cols=47  Identities=9%  Similarity=0.104  Sum_probs=40.3

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +.+.. ++.|+|++||+++++..+||++++|++|++...|++.++...
T Consensus       189 l~~~~-~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~  235 (250)
T PRK14266        189 IHKLK-EDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFIN  235 (250)
T ss_pred             HHHHh-cCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhC
Confidence            44443 368999999999999999999999999999999999887544

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.24  E-value=2.1e-06  Score=62.53  Aligned_cols=45  Identities=18%  Similarity=0.224  Sum_probs=38.5

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      +.++.+.|.|+|++||+++++..+||++++|++|++...|+++++
T Consensus       184 l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (501)
T PRK10762        184 IRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL  228 (501)
T ss_pred             HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence            445555588999999999999999999999999999988877654

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.23  E-value=2.9e-06  Score=55.33  Aligned_cols=41  Identities=29%  Similarity=0.431  Sum_probs=34.0

Q ss_pred             hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239          8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLG   48 (97)
Q Consensus         8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g   48 (97)
                      .+.++.++ |.|+|++||+++++..+||++++|++|++...|
T Consensus       173 ~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         173 ELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             HHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            34444443 889999999999999999999999999987654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.23  E-value=4.2e-06  Score=56.78  Aligned_cols=48  Identities=15%  Similarity=0.112  Sum_probs=40.0

Q ss_pred             hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .+.++.++ |.|+|++||+++++. .||++++|++|++...|+++++...
T Consensus       182 ~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~~  230 (277)
T PRK13642        182 VIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELFAT  230 (277)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHhcC
Confidence            34445444 899999999999997 5999999999999999999887653

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.23  E-value=3e-06  Score=55.07  Aligned_cols=39  Identities=18%  Similarity=0.239  Sum_probs=33.0

Q ss_pred             hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEe
Q psy18239          9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCL   47 (97)
Q Consensus         9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~   47 (97)
                      +.++.+ .+.|+|++||+++++..+||++++|++|++...
T Consensus       171 l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~  210 (211)
T cd03298         171 VLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ  210 (211)
T ss_pred             HHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence            444443 489999999999999999999999999998754

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.23  E-value=4.1e-06  Score=52.73  Aligned_cols=40  Identities=18%  Similarity=0.264  Sum_probs=33.5

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeE
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSC   46 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~   46 (97)
                      ..+++..+++.|+|++||+++++..+||++++|++|++.+
T Consensus       123 ~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216         123 KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            3344555558999999999999999999999999999764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.23  E-value=4.2e-06  Score=61.21  Aligned_cols=48  Identities=19%  Similarity=0.116  Sum_probs=40.9

Q ss_pred             hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +.++.+ .|.|+|++||+++.+..+||++++|++|++...|++.++...
T Consensus       211 l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  259 (520)
T TIGR03269       211 LEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV  259 (520)
T ss_pred             HHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence            455543 489999999999999999999999999999988988877654

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.23  E-value=5.6e-06  Score=56.15  Aligned_cols=48  Identities=6%  Similarity=0.108  Sum_probs=40.5

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEe---------CCEEeEecChHHHHHh
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMV---------NGRLSCLGSVQHLKNK   56 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~---------~G~i~~~g~~~~l~~~   56 (97)
                      .+.+..+ +.|+|++||+++++..+||++++|+         +|+++..|++.++...
T Consensus       203 ~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~~~  259 (274)
T PRK14265        203 LCLELKE-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGS  259 (274)
T ss_pred             HHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhC
Confidence            3444443 5899999999999999999999997         7999999999988653

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=98.22  E-value=5e-06  Score=56.02  Aligned_cols=47  Identities=9%  Similarity=0.097  Sum_probs=40.1

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEe---------CCEEeEecChHHHHHh
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMV---------NGRLSCLGSVQHLKNK   56 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~---------~G~i~~~g~~~~l~~~   56 (97)
                      +..+.+ +.|+|++||+++++..+||++++|+         +|+++..|+++++...
T Consensus       194 L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~~~  249 (264)
T PRK14243        194 MHELKE-QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNS  249 (264)
T ss_pred             HHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhC
Confidence            444444 4799999999999999999999998         7999999999998653

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.22  E-value=3.1e-06  Score=55.19  Aligned_cols=42  Identities=12%  Similarity=0.274  Sum_probs=35.4

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecC
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGS   49 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~   49 (97)
                      .+.+..+ .+.|+|++||+.+++..+||++++|++|++...|.
T Consensus       170 ~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       170 LVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence            3444444 47999999999999999999999999999988775

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.21  E-value=4.7e-06  Score=56.37  Aligned_cols=47  Identities=11%  Similarity=0.117  Sum_probs=38.7

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK   54 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~   54 (97)
                      ..+.+..++|.|+|++||+++++..+||+++++ +|++...|+++++.
T Consensus       183 ~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~  229 (272)
T PRK15056        183 SLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF  229 (272)
T ss_pred             HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence            334555555899999999999999999999777 89999999888753

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.21  E-value=6.6e-06  Score=55.43  Aligned_cols=47  Identities=11%  Similarity=0.121  Sum_probs=39.7

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEe--------CCEEeEecChHHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMV--------NGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~--------~G~i~~~g~~~~l~~   55 (97)
                      .+.++. ++.|+|++||+++++..+||++++|+        +|+++..|+.+++..
T Consensus       191 ~l~~~~-~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~~  245 (261)
T PRK14263        191 LMVELK-KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQ  245 (261)
T ss_pred             HHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHHh
Confidence            344443 36899999999999999999999996        899999999988765

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.21  E-value=3.9e-06  Score=54.54  Aligned_cols=41  Identities=24%  Similarity=0.310  Sum_probs=34.0

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG   48 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g   48 (97)
                      .+.+..+++.|+|++||+++++..+||++++|.+|++...|
T Consensus       170 ~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~  210 (210)
T cd03269         170 VIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG  210 (210)
T ss_pred             HHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence            34444445789999999999999999999999999987643

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.20  E-value=4.3e-06  Score=55.09  Aligned_cols=41  Identities=20%  Similarity=0.233  Sum_probs=34.1

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG   48 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g   48 (97)
                      .+.+..+++.|+|++||+++++..+||++++|++|++...|
T Consensus       184 ~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  224 (224)
T cd03220         184 RLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG  224 (224)
T ss_pred             HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence            34444445789999999999999999999999999987654

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.20  E-value=3.1e-06  Score=61.58  Aligned_cols=45  Identities=16%  Similarity=0.245  Sum_probs=38.5

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQH   52 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~   52 (97)
                      .+.++.++|.|+|++||+++++..+||++++|++|++...+++++
T Consensus       183 ~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~  227 (500)
T TIGR02633       183 IIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST  227 (500)
T ss_pred             HHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc
Confidence            345555568999999999999999999999999999988887654

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.20  E-value=6e-06  Score=55.42  Aligned_cols=46  Identities=7%  Similarity=0.139  Sum_probs=39.1

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEe-----CCEEeEecChHHHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMV-----NGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~-----~G~i~~~g~~~~l~~   55 (97)
                      +....+ +.|+|++||+++++..+||++++|.     +|+++..|++.++..
T Consensus       193 l~~~~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~  243 (259)
T PRK14260        193 IHSLRS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFS  243 (259)
T ss_pred             HHHHhc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHhc
Confidence            444443 5899999999999999999999997     499999999998754

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.20  E-value=6.3e-06  Score=55.71  Aligned_cols=48  Identities=8%  Similarity=0.104  Sum_probs=39.3

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeC-----------CEEeEecChHHHHHh
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVN-----------GRLSCLGSVQHLKNK   56 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~-----------G~i~~~g~~~~l~~~   56 (97)
                      .+.++.+ +.|+|++||+++++..+||++++|++           |+++..|++.++...
T Consensus       196 ~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~~  254 (269)
T PRK14259        196 TMHELKK-NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFNS  254 (269)
T ss_pred             HHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHhC
Confidence            3444433 68999999999999999999999996           568899999888653

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.19  E-value=8.1e-06  Score=53.64  Aligned_cols=45  Identities=13%  Similarity=0.105  Sum_probs=37.4

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +.... ++.|+|++||+++++.. ||++++|++|++...++.+++..
T Consensus       182 l~~~~-~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~~~~~~~  226 (229)
T cd03254         182 LEKLM-KGRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELLA  226 (229)
T ss_pred             HHHhc-CCCEEEEEecCHHHHhh-CCEEEEEeCCeEEEeCCHHHHHh
Confidence            44443 47899999999999865 99999999999999888877654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.18  E-value=4.1e-06  Score=61.13  Aligned_cols=43  Identities=16%  Similarity=0.229  Sum_probs=38.3

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecC
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGS   49 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~   49 (97)
                      ...+.++++|.++|++||.++++.++|||+.+|++|+.+...+
T Consensus       186 ~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~  228 (500)
T COG1129         186 DLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP  228 (500)
T ss_pred             HHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence            3456677789999999999999999999999999999888776

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.17  E-value=9.7e-06  Score=52.52  Aligned_cols=44  Identities=16%  Similarity=0.061  Sum_probs=36.5

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHh-hcCeEEEEeCCEEeEecChH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEA-LCTRLAVMVNGRLSCLGSVQ   51 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~-~~d~i~~l~~G~i~~~g~~~   51 (97)
                      .+.+..+++.|+|++||+++.+.. +||++++|++|++...|+.+
T Consensus       146 ~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~  190 (200)
T cd03217         146 VINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE  190 (200)
T ss_pred             HHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence            344554557899999999999887 79999999999999988444

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.17  E-value=3.5e-06  Score=55.66  Aligned_cols=40  Identities=5%  Similarity=0.008  Sum_probs=33.0

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEec
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLG   48 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g   48 (97)
                      .+.++.+.|.|+|++||+++++ .+||++++|      ++|++++.|
T Consensus       181 ~l~~~~~~g~tii~itH~~~~~-~~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         181 TLKRLRDLGNTVLVVEHDEDTI-RAADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             HHHHHHhCCCEEEEEEeCHHHH-HhCCEEEEeCCCccccCCEEEecC
Confidence            3445555689999999999987 589999999      999988765

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.17  E-value=8.3e-06  Score=54.68  Aligned_cols=46  Identities=9%  Similarity=0.135  Sum_probs=38.9

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEe------CCEEeEecChHHHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMV------NGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~------~G~i~~~g~~~~l~~   55 (97)
                      +.++. ++.|+|++||+++++..+||++++|+      +|++...|+++++..
T Consensus       191 l~~~~-~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~~  242 (258)
T PRK14241        191 INELK-QDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFS  242 (258)
T ss_pred             HHHHh-cCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHHh
Confidence            44443 35899999999999999999999997      799999999988754

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.17  E-value=4.3e-06  Score=57.41  Aligned_cols=49  Identities=20%  Similarity=0.259  Sum_probs=43.5

Q ss_pred             hhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          9 SRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         9 ~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      ++.+.++ +..|+.|||.++++++++|++++|++|++.+.|+.+++...+
T Consensus       171 lERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~  220 (352)
T COG4148         171 LERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP  220 (352)
T ss_pred             HHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence            5556654 889999999999999999999999999999999999987754

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.16  E-value=3.7e-06  Score=61.18  Aligned_cols=44  Identities=20%  Similarity=0.126  Sum_probs=37.2

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQ   51 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~   51 (97)
                      .+..+.++|.|+|++|||++++..+||++++|.+|++....+..
T Consensus       445 ~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~  488 (500)
T TIGR02633       445 LINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNH  488 (500)
T ss_pred             HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccc
Confidence            44555556899999999999999999999999999998766543

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.15  E-value=4.9e-06  Score=54.48  Aligned_cols=43  Identities=21%  Similarity=0.159  Sum_probs=35.5

Q ss_pred             hhhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEe--CCEEeEecCh
Q psy18239          8 HSRKNS-QTWISFGLFYSSLEECEALCTRLAVMV--NGRLSCLGSV   50 (97)
Q Consensus         8 ~~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~--~G~i~~~g~~   50 (97)
                      .+.+.. +.+.|+|++||+++++..+||++++|+  +|++...++.
T Consensus       173 ~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  218 (220)
T cd03293         173 ELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV  218 (220)
T ss_pred             HHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence            344443 347899999999999999999999999  7999887764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.13  E-value=1.1e-05  Score=53.15  Aligned_cols=46  Identities=17%  Similarity=0.167  Sum_probs=38.5

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.+..+ +.++|++||+++.+.. ||++++|++|++...|+.+++..
T Consensus       179 ~l~~~~~-~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~~~~~~  224 (236)
T cd03253         179 ALRDVSK-GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLA  224 (236)
T ss_pred             HHHHhcC-CCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCHHHHhh
Confidence            3444545 8899999999999976 99999999999999988877654

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.13  E-value=5.6e-06  Score=60.39  Aligned_cols=44  Identities=25%  Similarity=0.314  Sum_probs=37.0

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecCh
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSV   50 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~   50 (97)
                      ..+.++.++|.|+|++|||++++..+||++++|.+|++...++.
T Consensus       450 ~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~  493 (510)
T PRK09700        450 KVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN  493 (510)
T ss_pred             HHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence            34455555689999999999999999999999999999877654

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.12  E-value=6.4e-06  Score=59.84  Aligned_cols=44  Identities=18%  Similarity=0.151  Sum_probs=37.2

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecCh
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSV   50 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~   50 (97)
                      ..+..+.++|.|+|++|||++++..+||++++|.+|++...++.
T Consensus       432 ~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~  475 (491)
T PRK10982        432 QLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDT  475 (491)
T ss_pred             HHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcc
Confidence            34555556689999999999999999999999999999876644

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.12  E-value=7.1e-06  Score=55.28  Aligned_cols=43  Identities=16%  Similarity=0.145  Sum_probs=36.0

Q ss_pred             hhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChH
Q psy18239          9 SRKNS-QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQ   51 (97)
Q Consensus         9 ~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~   51 (97)
                      +.++. +.+.|+|++||+++++..+||++++|++|++...++..
T Consensus       176 L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        176 IESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence            44443 34799999999999999999999999999998877653

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.11  E-value=6.3e-06  Score=53.09  Aligned_cols=41  Identities=12%  Similarity=0.064  Sum_probs=33.1

Q ss_pred             hhhhhccCCcEEEEEeCCHH-HHHhhcCeEEEEeC-CEEeEec
Q psy18239          8 HSRKNSQTWISFGLFYSSLE-ECEALCTRLAVMVN-GRLSCLG   48 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g   48 (97)
                      .+.+..+.+.|+|++||+++ ++..+||++++|++ |++.+.|
T Consensus       150 ~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g  192 (192)
T cd03232         150 FLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG  192 (192)
T ss_pred             HHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence            34445455899999999998 47888999999998 9987654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.11  E-value=8.3e-06  Score=51.99  Aligned_cols=40  Identities=13%  Similarity=0.199  Sum_probs=33.1

Q ss_pred             hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEe
Q psy18239          8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCL   47 (97)
Q Consensus         8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~   47 (97)
                      .+.+..++ +.|+|++||+++++..+||++++|++|++...
T Consensus       139 ~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~  179 (180)
T cd03214         139 LLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ  179 (180)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence            34444444 78999999999999999999999999998754

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.11  E-value=5.1e-06  Score=54.21  Aligned_cols=37  Identities=14%  Similarity=0.081  Sum_probs=31.1

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRL   44 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i   44 (97)
                      .+.+..+++.|+|++||+++++..+||++++|++|++
T Consensus       180 ~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       180 LFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            3444445589999999999999999999999999874

>PLN03211 ABC transporter G-25; Provisional

Probab=98.11  E-value=5.7e-06  Score=62.34  Aligned_cols=52  Identities=12%  Similarity=0.025  Sum_probs=43.7

Q ss_pred             hhhhhhhccCCcEEEEEeCCHH-HHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          6 CQHSRKNSQTWISFGLFYSSLE-ECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         6 ~~~~~~~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      .+.++++.++|+|+|+++|+++ ++..++|++++|.+|++++.|+++++...+
T Consensus       246 ~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f  298 (659)
T PLN03211        246 VLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYF  298 (659)
T ss_pred             HHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHH
Confidence            3445566556899999999998 588999999999999999999999886544

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.10  E-value=8.7e-06  Score=53.98  Aligned_cols=41  Identities=24%  Similarity=0.271  Sum_probs=33.8

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG   48 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g   48 (97)
                      .+.+..+ .+.|+|++||+++++..+||++++|.+|++...|
T Consensus       195 ~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g  236 (236)
T cd03267         195 FLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG  236 (236)
T ss_pred             HHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence            3445444 4789999999999999999999999999987653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.10  E-value=1.4e-05  Score=52.36  Aligned_cols=41  Identities=7%  Similarity=0.178  Sum_probs=36.9

Q ss_pred             CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         16 WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +.++|++||++..+..+||++++|++|++...++.++..+.
T Consensus       153 ~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  193 (213)
T PRK15177        153 QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATAL  193 (213)
T ss_pred             CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHH
Confidence            35799999999999999999999999999999999887543

>PRK10908 cell division protein FtsE; Provisional

Probab=98.10  E-value=7.9e-06  Score=53.56  Aligned_cols=39  Identities=8%  Similarity=0.040  Sum_probs=32.8

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeE
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSC   46 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~   46 (97)
                      .+.+..+++.++|++||+++++..+||++++|++|++..
T Consensus       179 ~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        179 LFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            345554557899999999999999999999999999743

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.09  E-value=8.8e-06  Score=52.51  Aligned_cols=40  Identities=20%  Similarity=0.188  Sum_probs=32.8

Q ss_pred             hhhhccCCcEEEEEeCCHH-HHHhhcCeEEEEeCCEEeEec
Q psy18239          9 SRKNSQTWISFGLFYSSLE-ECEALCTRLAVMVNGRLSCLG   48 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g   48 (97)
                      +.+..+++.|+|++||+++ ++..+||++++|++|++...|
T Consensus       154 l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~  194 (194)
T cd03213         154 LRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG  194 (194)
T ss_pred             HHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence            4444445899999999996 788899999999999987643

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.09  E-value=8.3e-06  Score=53.03  Aligned_cols=40  Identities=25%  Similarity=0.287  Sum_probs=33.2

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG   48 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g   48 (97)
                      .+.+..+ +.|+|++||+++++..+||++++|++|++...|
T Consensus       172 ~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         172 LLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             HHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence            3444444 489999999999999999999999999987653

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.09  E-value=8.2e-06  Score=53.65  Aligned_cols=41  Identities=12%  Similarity=0.072  Sum_probs=33.9

Q ss_pred             hhhhhccCCcEEEEEeCCH-HHHHhhcCeEEEEeCCEEeEec
Q psy18239          8 HSRKNSQTWISFGLFYSSL-EECEALCTRLAVMVNGRLSCLG   48 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g   48 (97)
                      .+.+..+.+.|+|++||++ .++..+||++++|++|++...|
T Consensus       185 ~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         185 TLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             HHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence            3444545588999999999 6899999999999999987654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=4.3e-06  Score=61.27  Aligned_cols=47  Identities=17%  Similarity=0.144  Sum_probs=39.8

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .++.+.. +++|+||+||++..++. ||+|++|++|+++.+|.+.++..
T Consensus       515 ~ll~~~~-~~kTll~vTHrL~~le~-~drIivl~~Gkiie~G~~~~Ll~  561 (573)
T COG4987         515 ALLFEHA-EGKTLLMVTHRLRGLER-MDRIIVLDNGKIIEEGTHAELLA  561 (573)
T ss_pred             HHHHHHh-cCCeEEEEecccccHhh-cCEEEEEECCeeeecCCHHhhhc
Confidence            3344433 37999999999999876 99999999999999999999876

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.07  E-value=1.5e-05  Score=53.41  Aligned_cols=40  Identities=10%  Similarity=-0.018  Sum_probs=36.3

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      ++.|+|++||+++.+.. ||++++|++|++...|+++++..
T Consensus       204 ~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g~~~~~~~  243 (257)
T cd03288         204 ADRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLA  243 (257)
T ss_pred             CCCEEEEEecChHHHHh-CCEEEEEECCEEEEeCCHHHHHh
Confidence            47899999999999986 99999999999999999888754

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=98.06  E-value=7.6e-06  Score=61.14  Aligned_cols=53  Identities=21%  Similarity=0.155  Sum_probs=44.2

Q ss_pred             hhhhhhhhccCCcEEEEEeCCHH-HHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          5 RCQHSRKNSQTWISFGLFYSSLE-ECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         5 ~~~~~~~~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      -+..++++.+.|+|+|+++|++. ++..+||++++|.+|++++.|+++++...+
T Consensus       205 l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f  258 (617)
T TIGR00955       205 VVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFF  258 (617)
T ss_pred             HHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHH
Confidence            34455666666899999999995 788999999999999999999999986544

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.06  E-value=1.2e-05  Score=54.36  Aligned_cols=47  Identities=17%  Similarity=0.201  Sum_probs=38.7

Q ss_pred             hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.+..++ +.|+|++||+++++. .||++++|.+|++...|+..++..
T Consensus       184 ~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~  231 (271)
T PRK13632        184 IMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILN  231 (271)
T ss_pred             HHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHHhc
Confidence            34454444 589999999999986 799999999999999998887654

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.06  E-value=1.1e-05  Score=58.76  Aligned_cols=43  Identities=21%  Similarity=0.181  Sum_probs=36.0

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecC
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGS   49 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~   49 (97)
                      ..+.++.++|.|+|++||+++++..+||++++|++|++...++
T Consensus       181 ~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~  223 (501)
T PRK11288        181 RVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD  223 (501)
T ss_pred             HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence            3345555568999999999999999999999999999887654

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.06  E-value=1.7e-05  Score=54.61  Aligned_cols=47  Identities=4%  Similarity=0.100  Sum_probs=38.7

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeE-EEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRL-AVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i-~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++.+ +.++|++||+++.+..+||++ ++|++|++...|+++++..
T Consensus       242 ~L~~~~~-~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~~~~  289 (305)
T PRK14264        242 LIEELAE-EYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFE  289 (305)
T ss_pred             HHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCCHHHHHh
Confidence            3444444 489999999999999999997 5789999999999888754

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.04  E-value=2e-05  Score=53.80  Aligned_cols=47  Identities=6%  Similarity=0.146  Sum_probs=38.1

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEE-EEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLA-VMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++.+ +.++|++||+++++..+||+++ +|++|++...|++.++..
T Consensus       222 ~L~~~~~-~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~  269 (285)
T PRK14254        222 LIEELAE-EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFE  269 (285)
T ss_pred             HHHHHhc-CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHh
Confidence            3444444 3799999999999999999975 679999999998887654

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.04  E-value=1.4e-05  Score=53.58  Aligned_cols=47  Identities=9%  Similarity=0.037  Sum_probs=38.1

Q ss_pred             hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.++.++ +.|+|++||+++++..+||++++|+ +++...|+++++..
T Consensus       162 ~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~-~~i~~~g~~~~~~~  209 (251)
T PRK09544        162 LIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLN-HHICCSGTPEVVSL  209 (251)
T ss_pred             HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEC-CceEeeCCHHHHhC
Confidence            34444444 7999999999999999999999996 47888998887643

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.04  E-value=8.2e-06  Score=52.09  Aligned_cols=37  Identities=32%  Similarity=0.433  Sum_probs=31.1

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRL   44 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i   44 (97)
                      .+.+..+++.|+|++||+++++..+||++++|++|++
T Consensus       146 ~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         146 LIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI  182 (182)
T ss_pred             HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence            3445544579999999999999999999999999863

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.04  E-value=8.5e-06  Score=52.94  Aligned_cols=38  Identities=11%  Similarity=0.208  Sum_probs=31.7

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRL   44 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i   44 (97)
                      ..+.++.+.|.|+|++||+++++..+||++++|++|++
T Consensus       176 ~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         176 DVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            33455555688999999999999999999999999864

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.03  E-value=7.8e-06  Score=53.10  Aligned_cols=37  Identities=16%  Similarity=0.175  Sum_probs=30.8

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGR   43 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~   43 (97)
                      ..+.+..+++.++|++||+++++..+||++++|++|+
T Consensus       175 ~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         175 ELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            3344555458999999999999999999999999884

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.01  E-value=1.3e-05  Score=52.13  Aligned_cols=40  Identities=8%  Similarity=0.016  Sum_probs=31.7

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEe
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCL   47 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~   47 (97)
                      +.+.+..+++.|+|++||+++++..+||++++|++| +++.
T Consensus       173 ~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~  212 (213)
T cd03235         173 ELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS  212 (213)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence            334455446889999999999999999999999876 4443

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.01  E-value=1e-05  Score=52.70  Aligned_cols=36  Identities=11%  Similarity=0.175  Sum_probs=30.3

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGR   43 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~   43 (97)
                      .+.+..+++.|+|++||+++++..+||++++|++|+
T Consensus       179 ~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       179 LLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            344444458999999999999999999999999884

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.00  E-value=1.1e-05  Score=52.41  Aligned_cols=37  Identities=14%  Similarity=0.117  Sum_probs=31.0

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRL   44 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i   44 (97)
                      .+.+..+++.|+|++||+++.+..+||++++|++|++
T Consensus       178 ~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         178 LLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            3445544589999999999999999999999999874

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=98.00  E-value=2e-05  Score=51.80  Aligned_cols=51  Identities=12%  Similarity=0.141  Sum_probs=43.3

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      ++++.+.. ..+|+++.|||.++..+++++.+|..|.+.++|+.+++...+.
T Consensus       188 eLl~~la~-~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~dp~  238 (249)
T COG4674         188 ELLKSLAG-KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDPK  238 (249)
T ss_pred             HHHHHHhc-CceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcCcc
Confidence            34455544 5899999999999999999999999999999999999876543

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.00  E-value=2.3e-05  Score=57.54  Aligned_cols=42  Identities=14%  Similarity=0.193  Sum_probs=36.2

Q ss_pred             ccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEe-EecChHHHH
Q psy18239         13 SQTWISFGLFYSSLEECEALCTRLAVMVNGRLS-CLGSVQHLK   54 (97)
Q Consensus        13 ~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~l~   54 (97)
                      .+.+.|||++||+++.+..+||++++|++|++. +.|++++..
T Consensus       199 ~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~  241 (530)
T PRK15064        199 NERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYM  241 (530)
T ss_pred             HhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence            345789999999999999999999999999984 678777653

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=97.99  E-value=1.7e-05  Score=51.45  Aligned_cols=40  Identities=15%  Similarity=0.073  Sum_probs=33.0

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecC
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGS   49 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~   49 (97)
                      .+.+.. ++.|+|++||+++.+.. ||++++|++|++...|+
T Consensus       167 ~l~~~~-~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~  206 (207)
T cd03369         167 TIREEF-TNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDH  206 (207)
T ss_pred             HHHHhc-CCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCC
Confidence            344443 47999999999999976 99999999999987765

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.94  E-value=2.7e-05  Score=52.31  Aligned_cols=44  Identities=20%  Similarity=0.099  Sum_probs=35.5

Q ss_pred             hhhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEe--CCEEeEecChH
Q psy18239          8 HSRKNS-QTWISFGLFYSSLEECEALCTRLAVMV--NGRLSCLGSVQ   51 (97)
Q Consensus         8 ~~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~--~G~i~~~g~~~   51 (97)
                      .+.++. +.|.|+|++||+++++..+||++++|+  +|++...++..
T Consensus       170 ~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~  216 (255)
T PRK11248        170 LLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN  216 (255)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence            344443 348999999999999999999999998  59998877543

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=97.94  E-value=3.5e-05  Score=56.59  Aligned_cols=41  Identities=12%  Similarity=0.062  Sum_probs=36.4

Q ss_pred             CcEEEEEeCCHHHHHhhcCeEEEEeCCEEe-EecChHHHHHh
Q psy18239         16 WISFGLFYSSLEECEALCTRLAVMVNGRLS-CLGSVQHLKNK   56 (97)
Q Consensus        16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~l~~~   56 (97)
                      +.|+|++|||++++..+||++++|.+|+++ ..|++.++.+.
T Consensus       485 ~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~  526 (530)
T PRK15064        485 EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS  526 (530)
T ss_pred             CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence            469999999999999999999999999987 77888887654

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.94  E-value=1.7e-05  Score=53.27  Aligned_cols=31  Identities=23%  Similarity=0.221  Sum_probs=28.0

Q ss_pred             hccCCcEEEEEeCCHHHHHhhcCeEEEEeCC
Q psy18239         12 NSQTWISFGLFYSSLEECEALCTRLAVMVNG   42 (97)
Q Consensus        12 ~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G   42 (97)
                      ..+.+.|++++|||+++|..++||+++|.++
T Consensus       177 w~~~~~TvllVTHdi~EAv~LsdRivvl~~~  207 (248)
T COG1116         177 WEETRKTVLLVTHDVDEAVYLADRVVVLSNR  207 (248)
T ss_pred             HHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence            3456899999999999999999999999985

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.93  E-value=1.8e-05  Score=50.10  Aligned_cols=38  Identities=34%  Similarity=0.458  Sum_probs=31.4

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRL   44 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i   44 (97)
                      +.+.++.++|.++|++||+++++..+||++++|++|++
T Consensus       136 ~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i  173 (173)
T cd03230         136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI  173 (173)
T ss_pred             HHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence            33455555578999999999999999999999999863

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=2.4e-05  Score=57.70  Aligned_cols=46  Identities=24%  Similarity=0.327  Sum_probs=39.9

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +.++.+ ++|++++||++..+.. +|+|++|++|++++.|.++++.++
T Consensus       499 l~~l~~-~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~~~~L~~~  544 (559)
T COG4988         499 LQELAK-QKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGTHEELSEK  544 (559)
T ss_pred             HHHHHh-CCeEEEEEcChHHHhc-CCEEEEecCCceeccCCHHHHhhc
Confidence            444444 4899999999999887 999999999999999999998664

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.89  E-value=3.6e-05  Score=52.17  Aligned_cols=42  Identities=7%  Similarity=0.037  Sum_probs=35.0

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecCh
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSV   50 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~   50 (97)
                      .+..+.+.|.|+|++||+++.+. .||+++.|      .+|++++.|++
T Consensus       214 ~L~~l~~~g~tvIiitH~~~~i~-~aD~ii~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         214 VLQRLVDKGNTVVVIEHNLDVIK-CADWIIDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             HHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCC
Confidence            34455556899999999999986 69999999      79999998864

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.89  E-value=1.9e-05  Score=50.01  Aligned_cols=36  Identities=14%  Similarity=0.068  Sum_probs=29.3

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRL   44 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i   44 (97)
                      .+.+..+++.|+|++||+++.+. +||++++|++|++
T Consensus       138 ~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~l~~G~i  173 (173)
T cd03246         138 AIAALKAAGATRIVIAHRPETLA-SADRILVLEDGRV  173 (173)
T ss_pred             HHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence            34455555899999999999885 7999999999863

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.88  E-value=2.4e-05  Score=52.01  Aligned_cols=39  Identities=10%  Similarity=0.108  Sum_probs=31.8

Q ss_pred             hhhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239          5 RCQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRL   44 (97)
Q Consensus         5 ~~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i   44 (97)
                      .+.++.++.+ .|.|+||+|||...+. +|||++.|.+|++
T Consensus       181 V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~  220 (226)
T COG1136         181 VLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKI  220 (226)
T ss_pred             HHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCee
Confidence            3455666654 4899999999999776 6999999999983

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=97.88  E-value=3.4e-05  Score=50.39  Aligned_cols=38  Identities=18%  Similarity=0.145  Sum_probs=30.7

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEe
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCL   47 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~   47 (97)
                      .+.+..++ .|+|++||+++.. .+||++++|++|++...
T Consensus       182 ~l~~~~~~-~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~  219 (220)
T cd03245         182 RLRQLLGD-KTLIIITHRPSLL-DLVDRIIVMDSGRIVAD  219 (220)
T ss_pred             HHHHhcCC-CEEEEEeCCHHHH-HhCCEEEEEeCCeEeec
Confidence            34454443 8999999999986 68999999999998754

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.88  E-value=2.2e-05  Score=51.25  Aligned_cols=37  Identities=14%  Similarity=0.196  Sum_probs=30.2

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRL   44 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i   44 (97)
                      ..+.++.+ .+.|+|++||+++++. +||++++|++|++
T Consensus       181 ~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i  218 (218)
T cd03255         181 ELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI  218 (218)
T ss_pred             HHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence            33455554 4899999999999987 8999999999873

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=97.86  E-value=6.1e-06  Score=53.44  Aligned_cols=47  Identities=13%  Similarity=0.089  Sum_probs=42.7

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +..+.+.|.+|||++||++...+++|++.++..|++...|+.+++.+
T Consensus       175 l~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt  221 (248)
T COG4138         175 LSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT  221 (248)
T ss_pred             HHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence            45677889999999999999999999999999999999999888654

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=97.86  E-value=5.2e-05  Score=56.02  Aligned_cols=41  Identities=22%  Similarity=0.237  Sum_probs=37.5

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +++|+++++|.++.+.. ||++++|++|++.+.|+++++...
T Consensus       513 ~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl~~  553 (567)
T COG1132         513 KGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGTHEELLAK  553 (567)
T ss_pred             cCCEEEEEeccHhHHHh-CCEEEEEECCEEEEecCHHHHHHc
Confidence            45799999999998887 999999999999999999999775

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=97.86  E-value=4.8e-05  Score=57.53  Aligned_cols=41  Identities=15%  Similarity=0.205  Sum_probs=37.4

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .++|+|++||+++.+.. ||++++|++|++...|+.+++.+.
T Consensus       661 ~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~G~~~~Ll~~  701 (710)
T TIGR03796       661 RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQRGTHEELWAV  701 (710)
T ss_pred             cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEecCHHHHHHc
Confidence            57999999999998865 999999999999999999998764

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=97.85  E-value=7.2e-05  Score=56.50  Aligned_cols=42  Identities=21%  Similarity=0.258  Sum_probs=37.3

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      +++|+|++||+++.+. .||++++|++|++.+.|+.+++.+..
T Consensus       649 ~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~G~~~eLl~~~  690 (694)
T TIGR03375       649 AGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVADGPKDQVLEAL  690 (694)
T ss_pred             CCCEEEEEecCHHHHH-hCCEEEEEeCCEEEeeCCHHHHHHHh
Confidence            3689999999999875 69999999999999999999987653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=97.84  E-value=3.3e-05  Score=49.15  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=30.1

Q ss_pred             hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239          8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGR   43 (97)
Q Consensus         8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~   43 (97)
                      .+.++.++ +.|+|++||+++++..+||++++|++|+
T Consensus       142 ~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         142 LLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK  178 (178)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence            34455555 7899999999999999999999999874

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=97.84  E-value=5.7e-05  Score=57.34  Aligned_cols=42  Identities=17%  Similarity=0.222  Sum_probs=37.7

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      .++|+|++||+++.+.. ||++++|++|++.+.|+++++.++.
T Consensus       663 ~~~TvIiItHrl~~i~~-aD~IivL~~G~ive~Gt~~eL~~~~  704 (711)
T TIGR00958       663 ASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQ  704 (711)
T ss_pred             CCCeEEEEeccHHHHHh-CCEEEEEECCEEEEeeCHHHHHhCC
Confidence            57899999999998765 9999999999999999999987653

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=97.83  E-value=7.4e-05  Score=51.08  Aligned_cols=40  Identities=15%  Similarity=0.202  Sum_probs=35.7

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      ++.++|++||+++.+. .||++++|++|++...|+++++..
T Consensus       208 ~~~tIiiisH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~  247 (282)
T cd03291         208 ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQS  247 (282)
T ss_pred             CCCEEEEEeCChHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence            3689999999999985 699999999999999999888754

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.82  E-value=2.9e-05  Score=50.15  Aligned_cols=42  Identities=14%  Similarity=0.084  Sum_probs=34.9

Q ss_pred             hhhhhhhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeE
Q psy18239          4 DRCQHSRKNS-QTWISFGLFYSSLEECEALCTRLAVMVNGRLSC   46 (97)
Q Consensus         4 ~~~~~~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~   46 (97)
                      +..+++..+. +.|.|++++|||+..+.+ |+|.+.|..|++..
T Consensus       184 ~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~  226 (228)
T COG4181         184 KIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVE  226 (228)
T ss_pred             HHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceecc
Confidence            3456666654 569999999999999988 99999999999864

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=97.82  E-value=5.8e-05  Score=55.54  Aligned_cols=46  Identities=11%  Similarity=0.149  Sum_probs=38.2

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +.....+++|+|++||+++.+ ..||++++|++|++...|+.+++.+
T Consensus       497 l~~~~~~~~tvi~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~  542 (544)
T TIGR01842       497 IKALKARGITVVVITHRPSLL-GCVDKILVLQDGRIARFGERDEVLA  542 (544)
T ss_pred             HHHHhhCCCEEEEEeCCHHHH-HhCCEEEEEECCEEEeeCCHHHHhh
Confidence            444444578999999999876 4699999999999999999888754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=97.80  E-value=5e-05  Score=55.24  Aligned_cols=41  Identities=17%  Similarity=0.176  Sum_probs=36.2

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG   48 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g   48 (97)
                      .++.+.+.|+|||++||-++++.++|||+.+|++|+.+...
T Consensus       182 ~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~  222 (501)
T COG3845         182 ILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTV  222 (501)
T ss_pred             HHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeee
Confidence            36677788999999999999999999999999999976543

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.79  E-value=8.1e-05  Score=47.29  Aligned_cols=38  Identities=13%  Similarity=0.072  Sum_probs=30.8

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG   48 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g   48 (97)
                      +.+.. ++.|+|++||+++++. .||++++|++|++...|
T Consensus       141 l~~~~-~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~~  178 (178)
T cd03247         141 IFEVL-KDKTLIWITHHLTGIE-HMDKILFLENGKIIMQG  178 (178)
T ss_pred             HHHHc-CCCEEEEEecCHHHHH-hCCEEEEEECCEEEecC
Confidence            34443 4789999999999986 59999999999987643

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=97.79  E-value=4.8e-05  Score=55.66  Aligned_cols=45  Identities=22%  Similarity=0.163  Sum_probs=38.9

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQ   51 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~   51 (97)
                      ....++.++|++|||+|.+++++..+||||++|++|++...-+..
T Consensus       442 ~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~  486 (500)
T COG1129         442 RLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE  486 (500)
T ss_pred             HHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence            446677888999999999999999999999999999998854443

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.78  E-value=9.7e-05  Score=54.82  Aligned_cols=41  Identities=15%  Similarity=0.156  Sum_probs=36.5

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .++|+|++||+++.+.. ||++++|++|++...|+.+++...
T Consensus       524 ~~~tvIivtHr~~~l~~-~D~ii~l~~G~i~~~G~~~~L~~~  564 (592)
T PRK10790        524 EHTTLVVIAHRLSTIVE-ADTILVLHRGQAVEQGTHQQLLAA  564 (592)
T ss_pred             CCCEEEEEecchHHHHh-CCEEEEEECCEEEEEcCHHHHHhC
Confidence            35899999999988765 999999999999999999998654

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=97.77  E-value=8.5e-05  Score=56.06  Aligned_cols=40  Identities=18%  Similarity=0.226  Sum_probs=36.3

Q ss_pred             CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         16 WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      ++|+|++||+++.+.. ||++++|++|++...|+.+++.+.
T Consensus       635 ~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~~G~~~~Ll~~  674 (686)
T TIGR03797       635 KVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDELMAR  674 (686)
T ss_pred             CCeEEEEecChHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence            5899999999998865 999999999999999999998653

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=97.76  E-value=8.3e-05  Score=48.59  Aligned_cols=39  Identities=18%  Similarity=0.147  Sum_probs=32.1

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecC
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGS   49 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~   49 (97)
                      +.+..+ +.|+|++||+++++.. ||++++|++|++...|+
T Consensus       182 l~~~~~-~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         182 IREAFK-DCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS  220 (221)
T ss_pred             HHHhcC-CCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCC
Confidence            344433 5899999999999976 99999999999987765

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=97.75  E-value=8.2e-05  Score=55.95  Aligned_cols=39  Identities=8%  Similarity=0.079  Sum_probs=35.0

Q ss_pred             CcEEEEEeCCHHHHHhhcCeEEEEeCCEEe-EecChHHHH
Q psy18239         16 WISFGLFYSSLEECEALCTRLAVMVNGRLS-CLGSVQHLK   54 (97)
Q Consensus        16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~l~   54 (97)
                      +.|||++|||+.++..+||++++|.+|++. +.|+.++..
T Consensus       477 ~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  516 (638)
T PRK10636        477 EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ  516 (638)
T ss_pred             CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence            459999999999999999999999999987 788888863

>PLN03232 ABC transporter C family member; Provisional

Probab=97.75  E-value=9.2e-05  Score=60.26  Aligned_cols=42  Identities=17%  Similarity=0.213  Sum_probs=38.4

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      +++|+|+++|.++.+.. ||+|++|++|++++.|+++++.++.
T Consensus      1419 ~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eLl~~~ 1460 (1495)
T PLN03232       1419 KSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRD 1460 (1495)
T ss_pred             CCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhCC
Confidence            47999999999999887 9999999999999999999997654

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=97.75  E-value=9.1e-05  Score=56.00  Aligned_cols=41  Identities=20%  Similarity=0.284  Sum_probs=37.1

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .++|+|++||+++.+.. ||++++|++|++...|+.+++...
T Consensus       641 ~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~g~~~~l~~~  681 (694)
T TIGR01846       641 RGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEELLAL  681 (694)
T ss_pred             CCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEeCCHHHHHHc
Confidence            47899999999998865 999999999999999999998764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.75  E-value=0.0001  Score=54.61  Aligned_cols=41  Identities=17%  Similarity=0.208  Sum_probs=36.7

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +++|+|++||+++.+.. ||++++|++|++.+.|+.+++...
T Consensus       533 ~~~TvIiItHrl~~i~~-aD~Iivl~~G~i~e~G~~~eL~~~  573 (588)
T PRK11174        533 RRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGDYAELSQA  573 (588)
T ss_pred             CCCEEEEEecChHHHHh-CCEEEEEeCCeEeecCCHHHHHhc
Confidence            47899999999988765 999999999999999999998653

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=97.74  E-value=7.6e-05  Score=58.24  Aligned_cols=48  Identities=6%  Similarity=0.012  Sum_probs=40.9

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKN   55 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~   55 (97)
                      ..+.++.+.|.|||+++|+++.+. .||++++|      ++|+++..|+++++..
T Consensus       530 ~~L~~L~~~G~TVIvVeHd~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~  583 (924)
T TIGR00630       530 NTLKRLRDLGNTVIVVEHDEETIR-AADYVIDIGPGAGIHGGEVVASGTPEEILA  583 (924)
T ss_pred             HHHHHHHhCCCEEEEEECCHHHHh-hCCEEEEecccccCCCCEEeeccCHHHHhc
Confidence            345556667899999999999986 79999999      8999999999988753

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=97.74  E-value=0.00011  Score=54.30  Aligned_cols=41  Identities=15%  Similarity=0.115  Sum_probs=36.4

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +++|+|++||+++.+. .||++++|++|++.+.|+.+++...
T Consensus       528 ~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e~g~~~~l~~~  568 (582)
T PRK11176        528 KNRTSLVIAHRLSTIE-KADEILVVEDGEIVERGTHAELLAQ  568 (582)
T ss_pred             CCCEEEEEecchHHHH-hCCEEEEEECCEEEEeCCHHHHHhC
Confidence            4689999999998765 5999999999999999999998654

>PLN03130 ABC transporter C family member; Provisional

Probab=97.73  E-value=0.00011  Score=60.33  Aligned_cols=41  Identities=17%  Similarity=0.282  Sum_probs=37.9

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +++|+|+++|.++.+.. ||+|++|++|++++.|+++++.++
T Consensus      1422 ~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130       1422 KSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSN 1462 (1622)
T ss_pred             CCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHHHhC
Confidence            47999999999999987 999999999999999999998764

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.72  E-value=7.1e-05  Score=49.81  Aligned_cols=37  Identities=11%  Similarity=0.126  Sum_probs=33.2

Q ss_pred             hccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239         12 NSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG   48 (97)
Q Consensus        12 ~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g   48 (97)
                      ..+.+.|.+|+||+|++|..|.+|.++|+.|+++..-
T Consensus       195 V~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv  231 (263)
T COG1101         195 VEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV  231 (263)
T ss_pred             HHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence            3456899999999999999999999999999998764

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.72  E-value=0.00011  Score=48.43  Aligned_cols=41  Identities=20%  Similarity=0.135  Sum_probs=33.1

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecC
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGS   49 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~   49 (97)
                      .+.++.+ .|.|+|++||+++++.. ++++++|.+|++...++
T Consensus       187 ~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~~~~  228 (233)
T PRK11629        187 LLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTAELS  228 (233)
T ss_pred             HHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECCEEEEEec
Confidence            3445443 48999999999999887 47999999999987765

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=97.71  E-value=0.00012  Score=59.70  Aligned_cols=41  Identities=17%  Similarity=0.176  Sum_probs=37.8

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +++|+|+++|.++.+.. ||+|++|++|++++.|+++++.++
T Consensus      1469 ~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957      1469 EDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred             CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence            47999999999999886 899999999999999999998764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=97.70  E-value=9.6e-05  Score=57.81  Aligned_cols=48  Identities=4%  Similarity=0.037  Sum_probs=40.7

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKN   55 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~   55 (97)
                      ..+..+.+.|.|||+++|+++++. .||++++|      .+|++++.|+++++..
T Consensus       532 ~~L~~L~~~G~TVIvVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~  585 (943)
T PRK00349        532 ETLKHLRDLGNTLIVVEHDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEIMK  585 (943)
T ss_pred             HHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence            345556667899999999999986 59999999      8999999999998754

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=97.70  E-value=0.0001  Score=48.40  Aligned_cols=38  Identities=21%  Similarity=0.193  Sum_probs=30.6

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeE
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSC   46 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~   46 (97)
                      .+.+..+ .|.|+|++||+++.+.. ||++++|++|++..
T Consensus       188 ~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~  226 (228)
T PRK10584        188 LLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQE  226 (228)
T ss_pred             HHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEe
Confidence            3445444 47899999999998865 99999999999864

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.70  E-value=6.5e-05  Score=49.13  Aligned_cols=44  Identities=16%  Similarity=0.159  Sum_probs=40.5

Q ss_pred             cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239         14 QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus        14 ~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      +.|.+.|.++.++..+..++|.+++|+.|++++.|++.+++..+
T Consensus       198 k~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P  241 (267)
T COG4167         198 KQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASP  241 (267)
T ss_pred             HhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCC
Confidence            45999999999999999999999999999999999999987643

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.69  E-value=0.00011  Score=47.09  Aligned_cols=35  Identities=9%  Similarity=-0.115  Sum_probs=28.1

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRL   44 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i   44 (97)
                      +.+..+.|.++|++||+++++ ..||++++|.+|+.
T Consensus       132 l~~~~~~g~tvIivSH~~~~~-~~~d~i~~l~~g~~  166 (176)
T cd03238         132 IKGLIDLGNTVILIEHNLDVL-SSADWIIDFGPGSG  166 (176)
T ss_pred             HHHHHhCCCEEEEEeCCHHHH-HhCCEEEEECCCCC
Confidence            444444689999999999987 57999999977654

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PTZ00243 ABC transporter; Provisional

Probab=97.69  E-value=0.00013  Score=59.64  Aligned_cols=41  Identities=17%  Similarity=0.199  Sum_probs=37.4

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +++|+|+++|.++.+.. ||+|++|++|++.+.|+++++..+
T Consensus      1494 ~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243       1494 SAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred             CCCEEEEEeccHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence            47899999999998876 999999999999999999999764

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=97.67  E-value=0.00018  Score=53.50  Aligned_cols=41  Identities=22%  Similarity=0.160  Sum_probs=36.8

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .++|+|++||+++.+.. ||++++|++|++...|+.+++.++
T Consensus       519 ~~~tvI~isH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  559 (585)
T TIGR01192       519 KNRTTFIIAHRLSTVRN-ADLVLFLDQGRLIEKGSFQELIQK  559 (585)
T ss_pred             CCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHHC
Confidence            47999999999998865 999999999999999999988654

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=97.67  E-value=0.00014  Score=55.15  Aligned_cols=41  Identities=15%  Similarity=0.185  Sum_probs=36.8

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +++|+|++||+++.+. .||++++|++|++...|+.+++...
T Consensus       658 ~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~~G~~~~L~~~  698 (708)
T TIGR01193       658 QDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDELLDR  698 (708)
T ss_pred             cCCEEEEEecchHHHH-cCCEEEEEECCEEEEECCHHHHHhc
Confidence            4689999999999875 5999999999999999999998764

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.66  E-value=9.6e-05  Score=48.29  Aligned_cols=37  Identities=22%  Similarity=0.153  Sum_probs=29.8

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEe
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLS   45 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~   45 (97)
                      .+.++.+ .+.|+|++||+++.+.. ||++++|++|+++
T Consensus       183 ~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~  220 (221)
T TIGR02211       183 LMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF  220 (221)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence            3444444 47899999999999865 8999999999864

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.66  E-value=0.00014  Score=53.82  Aligned_cols=41  Identities=15%  Similarity=0.180  Sum_probs=36.5

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +++|+|++||+++.+.. ||++++|++|++...|+.+++...
T Consensus       499 ~~~tii~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  539 (569)
T PRK10789        499 EGRTVIISAHRLSALTE-ASEILVMQHGHIAQRGNHDQLAQQ  539 (569)
T ss_pred             CCCEEEEEecchhHHHc-CCEEEEEeCCEEEEecCHHHHHHc
Confidence            57999999999988765 999999999999999999988653

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.66  E-value=0.00018  Score=53.41  Aligned_cols=41  Identities=24%  Similarity=0.250  Sum_probs=37.0

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +++|+|++||+++.+.. ||++++|++|++...|+.+++.+.
T Consensus       523 ~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  563 (574)
T PRK11160        523 QNKTVLMITHRLTGLEQ-FDRICVMDNGQIIEQGTHQELLAQ  563 (574)
T ss_pred             CCCEEEEEecChhHHHh-CCEEEEEeCCeEEEeCCHHHHHhc
Confidence            47899999999998865 999999999999999999998654

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=97.66  E-value=9.6e-05  Score=48.30  Aligned_cols=46  Identities=15%  Similarity=0.082  Sum_probs=39.9

Q ss_pred             hhhhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecC
Q psy18239          4 DRCQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGS   49 (97)
Q Consensus         4 ~~~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~   49 (97)
                      ..+.++.++...|.||+|+|||.+.+..+.-|++.+++|++.....
T Consensus       175 ~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~  220 (223)
T COG2884         175 EIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES  220 (223)
T ss_pred             HHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence            3456677888889999999999999999999999999999876543

>PLN03073 ABC transporter F family; Provisional

Probab=97.65  E-value=0.00019  Score=54.78  Aligned_cols=39  Identities=13%  Similarity=0.097  Sum_probs=34.0

Q ss_pred             CcEEEEEeCCHHHHHhhcCeEEEEeCCEEe-EecChHHHH
Q psy18239         16 WISFGLFYSSLEECEALCTRLAVMVNGRLS-CLGSVQHLK   54 (97)
Q Consensus        16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~l~   54 (97)
                      +.|+|++|||++.+..+||++++|.+|++. +.|+..+..
T Consensus       674 ~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~  713 (718)
T PLN03073        674 QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK  713 (718)
T ss_pred             CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence            359999999999999999999999999987 677776653

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=97.65  E-value=9.3e-05  Score=59.90  Aligned_cols=53  Identities=9%  Similarity=0.075  Sum_probs=43.7

Q ss_pred             hhhhhhhhhcc-CCcEEEEEeCCH-HHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          4 DRCQHSRKNSQ-TWISFGLFYSSL-EECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         4 ~~~~~~~~~~~-~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .-+..++++.+ .|.|+|+++|++ +++..++|++++|.+|++++.|+++++...
T Consensus       247 ~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~y  301 (1394)
T TIGR00956       247 EFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQY  301 (1394)
T ss_pred             HHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHH
Confidence            34455666665 489999999996 788899999999999999999999887543

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=97.65  E-value=0.00016  Score=53.69  Aligned_cols=41  Identities=22%  Similarity=0.206  Sum_probs=36.1

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +++|+|++||+++.+. .||++++|++|++...|+.+++...
T Consensus       519 ~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~~g~~~~l~~~  559 (588)
T PRK13657        519 KGRTTFIIAHRLSTVR-NADRILVFDNGRVVESGSFDELVAR  559 (588)
T ss_pred             cCCEEEEEEecHHHHH-hCCEEEEEECCEEEEeCCHHHHHHC
Confidence            4699999999998765 5999999999999999999988643

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=97.64  E-value=0.00012  Score=55.82  Aligned_cols=47  Identities=15%  Similarity=0.141  Sum_probs=40.0

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .+.+.. .|+|+|+++|.+..+.. ||++++|++|+++..|+.+++...
T Consensus       651 ~L~~~~-~~~T~I~IaHRl~ti~~-adrIiVl~~Gkiv~~gs~~ell~~  697 (709)
T COG2274         651 NLLQIL-QGRTVIIIAHRLSTIRS-ADRIIVLDQGKIVEQGSHEELLAQ  697 (709)
T ss_pred             HHHHHh-cCCeEEEEEccchHhhh-ccEEEEccCCceeccCCHHHHHHh
Confidence            344443 36999999999998875 999999999999999999999875

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=97.63  E-value=0.00022  Score=52.81  Aligned_cols=38  Identities=8%  Similarity=-0.131  Sum_probs=33.3

Q ss_pred             CcEEEEEeCCHHHHHhhcCeEEEEeCCEEe-EecChHHH
Q psy18239         16 WISFGLFYSSLEECEALCTRLAVMVNGRLS-CLGSVQHL   53 (97)
Q Consensus        16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~l   53 (97)
                      +.|+|++||+++++..+||++++|++|++. +.|+.+..
T Consensus       210 ~~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~  248 (556)
T PRK11819        210 PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSW  248 (556)
T ss_pred             CCeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence            459999999999999999999999999986 66776654

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=97.62  E-value=0.0002  Score=48.03  Aligned_cols=45  Identities=13%  Similarity=0.001  Sum_probs=33.3

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEe--EecChHH
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLS--CLGSVQH   52 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~--~~g~~~~   52 (97)
                      .+.+..+ .+.|+|++||+++.+..+||++++|.++...  ..+++..
T Consensus       157 ~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~  204 (246)
T cd03237         157 VIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQS  204 (246)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence            3445443 4799999999999999999999999765433  3455555

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.61  E-value=7.9e-05  Score=48.40  Aligned_cols=54  Identities=17%  Similarity=0.124  Sum_probs=44.2

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCc
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVG   60 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~   60 (97)
                      .+++.+.. -+.+++++|||+..+.-+++|..+|..|+++..|-.+.+...+...
T Consensus       192 DllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrvLDDP~hP  246 (258)
T COG4107         192 DLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHP  246 (258)
T ss_pred             HHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccccccccCCCCc
Confidence            44556554 4899999999999999999999999999999999877776555433

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=97.61  E-value=0.00024  Score=52.51  Aligned_cols=38  Identities=8%  Similarity=-0.131  Sum_probs=33.2

Q ss_pred             CcEEEEEeCCHHHHHhhcCeEEEEeCCEEe-EecChHHH
Q psy18239         16 WISFGLFYSSLEECEALCTRLAVMVNGRLS-CLGSVQHL   53 (97)
Q Consensus        16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~l   53 (97)
                      +.++|++||+++.+..+||++++|++|++. +.|+.++.
T Consensus       208 ~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~  246 (552)
T TIGR03719       208 PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSW  246 (552)
T ss_pred             CCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCHHHH
Confidence            469999999999999999999999999975 66777654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=97.59  E-value=0.0001  Score=49.67  Aligned_cols=39  Identities=10%  Similarity=0.015  Sum_probs=30.7

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeE
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSC   46 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~   46 (97)
                      ..+.++.+++.++|++||+++.+..+||++++|+ |++.+
T Consensus       180 ~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~  218 (255)
T cd03236         180 RLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGA  218 (255)
T ss_pred             HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCc
Confidence            3445555557999999999999999999999995 55543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.59  E-value=0.00013  Score=46.93  Aligned_cols=45  Identities=18%  Similarity=0.223  Sum_probs=40.4

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      .+++.+.|.|=+++||..+.+...+.+++.|++|+++..|+.+.+
T Consensus       184 ikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f  228 (242)
T COG4161         184 IKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF  228 (242)
T ss_pred             HHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence            355667799999999999999999999999999999999988764

>PLN03140 ABC transporter G family member; Provisional

Probab=97.58  E-value=0.00014  Score=59.22  Aligned_cols=53  Identities=13%  Similarity=0.124  Sum_probs=43.4

Q ss_pred             hhhhhhhhcc-CCcEEEEEeCCH-HHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          5 RCQHSRKNSQ-TWISFGLFYSSL-EECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         5 ~~~~~~~~~~-~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      .+..++++.+ .|.|+|+++|++ +++..++|++++|.+|++++.|+.+++...+
T Consensus       375 i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF  429 (1470)
T PLN03140        375 IVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFF  429 (1470)
T ss_pred             HHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHH
Confidence            3455666654 489999999996 6888999999999999999999998876543

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.58  E-value=0.00015  Score=44.72  Aligned_cols=28  Identities=11%  Similarity=0.030  Sum_probs=26.0

Q ss_pred             CcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239         16 WISFGLFYSSLEECEALCTRLAVMVNGR   43 (97)
Q Consensus        16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~   43 (97)
                      +.|++++||+++++..+||++++|++|+
T Consensus       117 ~~til~~th~~~~~~~~~d~v~~l~~g~  144 (144)
T cd03221         117 PGTVILVSHDRYFLDQVATKIIELEDGK  144 (144)
T ss_pred             CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence            5799999999999999999999999885

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=97.57  E-value=0.00027  Score=57.68  Aligned_cols=40  Identities=20%  Similarity=0.214  Sum_probs=36.7

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .++|+|+++|.++.+.. ||++++|++|+++..|+++++..
T Consensus      1401 ~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271      1401 SNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred             CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHHHHc
Confidence            46999999999998876 99999999999999999999864

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=97.56  E-value=0.00026  Score=55.50  Aligned_cols=49  Identities=6%  Similarity=0.023  Sum_probs=40.6

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHHhh
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~   57 (97)
                      .+..+.+.|.|+|++||+++.+. .||+++.|      .+|++++.|+++++....
T Consensus       875 ~L~~l~~~G~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~  929 (943)
T PRK00349        875 VLHRLVDKGNTVVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVATGTPEEVAKVE  929 (943)
T ss_pred             HHHHHHhCCCEEEEEecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCc
Confidence            34455556899999999999986 69999999      689999999999986543

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=97.56  E-value=0.00016  Score=54.56  Aligned_cols=45  Identities=7%  Similarity=-0.036  Sum_probs=38.2

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK   54 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~   54 (97)
                      +.++.+++.+++++||+++.+. .||++++|++|++...|+.++..
T Consensus       187 l~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~  231 (648)
T PRK10535        187 LHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEKV  231 (648)
T ss_pred             HHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCccccc
Confidence            4444456899999999999876 59999999999999999998764

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=97.55  E-value=0.00028  Score=52.17  Aligned_cols=45  Identities=18%  Similarity=0.123  Sum_probs=37.7

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +.... .++|+|++||+++.+. .||+++.|++|++...|+++++..
T Consensus       519 l~~~~-~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~~g~~~~l~~  563 (576)
T TIGR02204       519 LETLM-KGRTTLIIAHRLATVL-KADRIVVMDQGRIVAQGTHAELIA  563 (576)
T ss_pred             HHHHh-CCCEEEEEecchHHHH-hCCEEEEEECCEEEeeecHHHHHH
Confidence            44443 4799999999998775 599999999999999999988754

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.54  E-value=0.00019  Score=44.57  Aligned_cols=35  Identities=17%  Similarity=0.172  Sum_probs=28.8

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGR   43 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~   43 (97)
                      +.+..+.+.+++++||+++++..+||+++++.+|+
T Consensus       123 l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~  157 (157)
T cd00267         123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK  157 (157)
T ss_pred             HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence            33333446899999999999999999999998874

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=97.54  E-value=0.00011  Score=53.51  Aligned_cols=45  Identities=20%  Similarity=0.207  Sum_probs=39.8

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQH   52 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~   52 (97)
                      .+.+.++.|.+|+++|.+++++.++|||+++|.+|++....++++
T Consensus       445 ~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~  489 (501)
T COG3845         445 RLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE  489 (501)
T ss_pred             HHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence            355667789999999999999999999999999999998877765

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=97.54  E-value=0.00027  Score=52.11  Aligned_cols=46  Identities=17%  Similarity=0.127  Sum_probs=37.9

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.+.. .++|+|++||+.+.. ..||+++.|++|++...|+.+++..
T Consensus       511 ~L~~~~-~~~tiIiitH~~~~~-~~~D~ii~l~~g~i~~~g~~~~l~~  556 (571)
T TIGR02203       511 ALERLM-QGRTTLVIAHRLSTI-EKADRIVVMDDGRIVERGTHNELLA  556 (571)
T ss_pred             HHHHHh-CCCEEEEEehhhHHH-HhCCEEEEEeCCEEEeeCCHHHHHH
Confidence            344442 468999999999876 4599999999999999999999864

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.51  E-value=0.00022  Score=45.69  Aligned_cols=37  Identities=16%  Similarity=0.033  Sum_probs=29.7

Q ss_pred             hhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEe
Q psy18239          9 SRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLS   45 (97)
Q Consensus         9 ~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~   45 (97)
                      +.+..++ +.++|++||+++.+..+||++++|+++...
T Consensus       114 l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~  151 (177)
T cd03222         114 IRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV  151 (177)
T ss_pred             HHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence            3444444 489999999999999999999999877554

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.50  E-value=0.00021  Score=45.16  Aligned_cols=33  Identities=18%  Similarity=0.205  Sum_probs=27.2

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGR   43 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~   43 (97)
                      +.++.+ +.++|++||+++++.. ||++++|++|+
T Consensus       139 l~~~~~-~~tii~~sh~~~~~~~-~d~~~~l~~g~  171 (171)
T cd03228         139 LRALAK-GKTVIVIAHRLSTIRD-ADRIIVLDDGR  171 (171)
T ss_pred             HHHhcC-CCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence            334433 6899999999999987 99999999874

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=97.50  E-value=0.00023  Score=46.59  Aligned_cols=37  Identities=14%  Similarity=0.132  Sum_probs=29.5

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRL   44 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i   44 (97)
                      ..+.++.+ .+.|+|++||+++. ..+||++++|++|++
T Consensus       182 ~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       182 ELMQKLAREQGCTILIVTHDNRI-LDVADRIVHMEDGKL  219 (220)
T ss_pred             HHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence            33445444 48999999999985 578999999999975

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=97.49  E-value=0.00043  Score=52.18  Aligned_cols=41  Identities=7%  Similarity=0.044  Sum_probs=33.9

Q ss_pred             ccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEe-EecChHHH
Q psy18239         13 SQTWISFGLFYSSLEECEALCTRLAVMVNGRLS-CLGSVQHL   53 (97)
Q Consensus        13 ~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~l   53 (97)
                      .+.+.|+|++|||..++..+||++++|++|++. +.|+....
T Consensus       193 ~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~  234 (638)
T PRK10636        193 KSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSF  234 (638)
T ss_pred             HhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence            334679999999999999999999999999986 45655544

>KOG0055|consensus

Probab=97.48  E-value=0.0003  Score=56.02  Aligned_cols=46  Identities=15%  Similarity=0.124  Sum_probs=40.7

Q ss_pred             hhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239         11 KNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus        11 ~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      +....|+|.|+++|.+..+.. +|++++|++|++++.|+++++....
T Consensus       533 d~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~~  578 (1228)
T KOG0055|consen  533 DKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIALG  578 (1228)
T ss_pred             HHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhcc
Confidence            344568999999999999998 9999999999999999999987654

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=97.48  E-value=0.00047  Score=51.85  Aligned_cols=38  Identities=16%  Similarity=0.136  Sum_probs=32.9

Q ss_pred             CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeE-ecChHHH
Q psy18239         16 WISFGLFYSSLEECEALCTRLAVMVNGRLSC-LGSVQHL   53 (97)
Q Consensus        16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~l   53 (97)
                      +.+||++|||..++..+||+++.|++|++.. .|+....
T Consensus       203 ~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~  241 (635)
T PRK11147        203 QGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQY  241 (635)
T ss_pred             CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHH
Confidence            4699999999999999999999999999874 4766653

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.45  E-value=0.0003  Score=45.65  Aligned_cols=42  Identities=19%  Similarity=0.260  Sum_probs=30.0

Q ss_pred             hhhhhhccC-CcEEEE-EeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239          7 QHSRKNSQT-WISFGL-FYSSLEECEALCTRLAVMVNGRLSCLG   48 (97)
Q Consensus         7 ~~~~~~~~~-~~tiii-~tH~~~~~~~~~d~i~~l~~G~i~~~g   48 (97)
                      ..+.++.++ +.++++ ++|+.+++..+||++++|.+|++...|
T Consensus       159 ~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g  202 (202)
T cd03233         159 KCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG  202 (202)
T ss_pred             HHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence            334454443 566555 556678999999999999999987643

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=97.44  E-value=0.00028  Score=46.12  Aligned_cols=35  Identities=17%  Similarity=0.010  Sum_probs=30.2

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGR   43 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~   43 (97)
                      +.++.+++.|+|++||+++.+..+||+++++++|.
T Consensus       176 l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~  210 (213)
T cd03279         176 LELIRTENRMVGVISHVEELKERIPQRLEVIKTPG  210 (213)
T ss_pred             HHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence            44555558899999999999999999999999885

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=97.44  E-value=0.00039  Score=54.42  Aligned_cols=45  Identities=7%  Similarity=0.057  Sum_probs=37.7

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHL   53 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l   53 (97)
                      .+.++.+.|.|+|+++|+++.+. .||+++.|      .+|++++.|+++++
T Consensus       873 ~L~~l~~~G~TVIvi~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       873 VLQRLVDQGNTVVVIEHNLDVIK-TADYIIDLGPEGGDGGGTIVASGTPEEV  923 (924)
T ss_pred             HHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence            34455556899999999999885 59999999      79999999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PLN03073 ABC transporter F family; Provisional

Probab=97.42  E-value=0.00057  Score=52.24  Aligned_cols=41  Identities=12%  Similarity=0.016  Sum_probs=33.9

Q ss_pred             hccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEe-EecChHH
Q psy18239         12 NSQTWISFGLFYSSLEECEALCTRLAVMVNGRLS-CLGSVQH   52 (97)
Q Consensus        12 ~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~   52 (97)
                      +.+.+.|+|++||+.+++..+||++++|++|++. +.|+...
T Consensus       387 L~~~~~tviivsHd~~~l~~~~d~i~~l~~g~i~~~~g~~~~  428 (718)
T PLN03073        387 LLKWPKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDT  428 (718)
T ss_pred             HHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence            3334789999999999999999999999999986 4565543

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=97.42  E-value=0.00047  Score=56.99  Aligned_cols=47  Identities=9%  Similarity=0.001  Sum_probs=40.1

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEe------CCEEeEecChHHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMV------NGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~------~G~i~~~g~~~~l~~   55 (97)
                      .+..+.+.|.|||++||+++.+ .+||+++.|.      +|+++..|+++++..
T Consensus       854 lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~  906 (1809)
T PRK00635        854 VLQSLTHQGHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELIH  906 (1809)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence            3455556689999999999998 7899999996      789999999998764

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=97.42  E-value=0.00022  Score=51.91  Aligned_cols=42  Identities=12%  Similarity=0.071  Sum_probs=33.0

Q ss_pred             hhhhhhccCC-cEEEEEeCCHHHHHh-hcCeEEEEeCCEEeEec
Q psy18239          7 QHSRKNSQTW-ISFGLFYSSLEECEA-LCTRLAVMVNGRLSCLG   48 (97)
Q Consensus         7 ~~~~~~~~~~-~tiii~tH~~~~~~~-~~d~i~~l~~G~i~~~g   48 (97)
                      ..+.++.+++ .|+|++||+++++.. +||++++|.+|++....
T Consensus       442 ~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~  485 (490)
T PRK10938        442 RFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV  485 (490)
T ss_pred             HHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence            3455555554 579999999999987 59999999999987654

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=97.38  E-value=0.00033  Score=45.92  Aligned_cols=34  Identities=15%  Similarity=0.169  Sum_probs=27.6

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRL   44 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i   44 (97)
                      +.+..+ +.|+|++||+++++.. ||++++|++|++
T Consensus       193 l~~~~~-~~tii~~sh~~~~~~~-~d~i~~l~~g~i  226 (226)
T cd03248         193 LYDWPE-RRTVLVIAHRLSTVER-ADQILVLDGGRI  226 (226)
T ss_pred             HHHHcC-CCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence            344433 5899999999999975 999999999863

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=97.37  E-value=0.00036  Score=45.12  Aligned_cols=31  Identities=19%  Similarity=0.083  Sum_probs=26.9

Q ss_pred             hccCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239         12 NSQTWISFGLFYSSLEECEALCTRLAVMVNGR   43 (97)
Q Consensus        12 ~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~   43 (97)
                      ..+++.|+|++||+++.+.. ||++++|.+|+
T Consensus       174 ~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~  204 (204)
T cd03250         174 LLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR  204 (204)
T ss_pred             hccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence            33457999999999999988 99999999884

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=97.33  E-value=0.00028  Score=57.23  Aligned_cols=47  Identities=15%  Similarity=0.124  Sum_probs=38.2

Q ss_pred             hhhhhhhhccCCcEEEEEeCCHHHH-HhhcCeEEEEeCC-EEeEecChH
Q psy18239          5 RCQHSRKNSQTWISFGLFYSSLEEC-EALCTRLAVMVNG-RLSCLGSVQ   51 (97)
Q Consensus         5 ~~~~~~~~~~~~~tiii~tH~~~~~-~~~~d~i~~l~~G-~i~~~g~~~   51 (97)
                      .+..++++.++|.|||+++|+++.. ...+|++++|.+| ++++.|++.
T Consensus       941 i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~  989 (1394)
T TIGR00956       941 ICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG  989 (1394)
T ss_pred             HHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence            3445666666789999999999874 5679999999987 999999863

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=97.32  E-value=0.0003  Score=51.73  Aligned_cols=49  Identities=10%  Similarity=0.138  Sum_probs=42.4

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      +...+++|.+++++||.+..+.. +|++.+|++|++..+|+.+++..+..
T Consensus       515 i~~~k~rG~~vvviaHRPs~L~~-~Dkilvl~~G~~~~FG~r~eVLa~~~  563 (580)
T COG4618         515 ILAAKARGGTVVVIAHRPSALAS-VDKILVLQDGRIAAFGPREEVLAKVL  563 (580)
T ss_pred             HHHHHHcCCEEEEEecCHHHHhh-cceeeeecCChHHhcCCHHHHHHHhc
Confidence            34556779999999999997765 99999999999999999999987654

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=97.30  E-value=0.0011  Score=49.22  Aligned_cols=39  Identities=8%  Similarity=0.026  Sum_probs=32.7

Q ss_pred             cEEEEEeCCHHHHHhhcCeEEEEeC-CEEe-EecChHHHHH
Q psy18239         17 ISFGLFYSSLEECEALCTRLAVMVN-GRLS-CLGSVQHLKN   55 (97)
Q Consensus        17 ~tiii~tH~~~~~~~~~d~i~~l~~-G~i~-~~g~~~~l~~   55 (97)
                      .++|++|||++++..+||++++|++ |++. +.|+.+++.+
T Consensus       493 ~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~  533 (556)
T PRK11819        493 GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE  533 (556)
T ss_pred             CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence            4899999999999999999999985 7765 5777777654

>PLN03140 ABC transporter G family member; Provisional

Probab=97.30  E-value=0.00041  Score=56.59  Aligned_cols=47  Identities=13%  Similarity=0.059  Sum_probs=38.6

Q ss_pred             hhhhhhhhccCCcEEEEEeCCHH-HHHhhcCeEEEEeC-CEEeEecChH
Q psy18239          5 RCQHSRKNSQTWISFGLFYSSLE-ECEALCTRLAVMVN-GRLSCLGSVQ   51 (97)
Q Consensus         5 ~~~~~~~~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~   51 (97)
                      .+..++++.+.|.|||+++|+++ ++..+||++++|.+ |++++.|+..
T Consensus      1058 v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140       1058 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred             HHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence            34456666667899999999998 57789999999986 8999999863

>KOG0054|consensus

Probab=97.29  E-value=0.00047  Score=55.71  Aligned_cols=40  Identities=15%  Similarity=0.173  Sum_probs=36.2

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +++|+|++||.+..... ||.|++|++|++...|+.+++.+
T Consensus       692 ~~KT~ILVTHql~~L~~-ad~Iivl~~G~I~~~Gty~el~~  731 (1381)
T KOG0054|consen  692 RGKTVILVTHQLQFLPH-ADQIIVLKDGKIVESGTYEELLK  731 (1381)
T ss_pred             cCCEEEEEeCchhhhhh-CCEEEEecCCeEecccCHHHHHh
Confidence            46899999999887765 99999999999999999999874

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.29  E-value=0.00043  Score=45.20  Aligned_cols=34  Identities=6%  Similarity=-0.144  Sum_probs=28.3

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVN   41 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~   41 (97)
                      .+.+..+++.|+|++||+++++..+|+++++++.
T Consensus       179 ~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~  212 (214)
T PRK13543        179 MISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA  212 (214)
T ss_pred             HHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence            3444555688999999999999999999999864

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=97.28  E-value=0.00081  Score=55.66  Aligned_cols=47  Identities=15%  Similarity=0.063  Sum_probs=38.7

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEe------CCEEeEecChHHHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMV------NGRLSCLGSVQHLK   54 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~------~G~i~~~g~~~~l~   54 (97)
                      ..+..+.+.|.|||+++|+++ +..+||++++|.      +|++++.|+++++.
T Consensus       519 ~lL~~L~~~G~TVIvVeHd~~-vi~~aDrVi~L~pGag~~gG~Iv~~G~~~eil  571 (1809)
T PRK00635        519 NVIKKLRDQGNTVLLVEHDEQ-MISLADRIIDIGPGAGIFGGEVLFNGSPREFL  571 (1809)
T ss_pred             HHHHHHHhCCCEEEEEeCcHH-HHHhCCEEEEEcCCcccCCCEEEEecCHHHHh
Confidence            345566666899999999999 557899999996      77999999988763

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=97.26  E-value=0.0012  Score=48.90  Aligned_cols=39  Identities=5%  Similarity=-0.014  Sum_probs=31.8

Q ss_pred             cEEEEEeCCHHHHHhhcCeEEEEeC-CEEe-EecChHHHHH
Q psy18239         17 ISFGLFYSSLEECEALCTRLAVMVN-GRLS-CLGSVQHLKN   55 (97)
Q Consensus        17 ~tiii~tH~~~~~~~~~d~i~~l~~-G~i~-~~g~~~~l~~   55 (97)
                      .++|++|||++++..+||++++|++ |++. +.|+..+..+
T Consensus       491 ~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~  531 (552)
T TIGR03719       491 GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE  531 (552)
T ss_pred             CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence            4899999999999999999999986 5765 5577665543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK13409 putative ATPase RIL; Provisional

Probab=97.25  E-value=0.00054  Score=51.27  Aligned_cols=42  Identities=12%  Similarity=0.060  Sum_probs=32.7

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecC
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGS   49 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~   49 (97)
                      ..++++.+ .|.|+|++|||++++..+||++++|++ ++...|+
T Consensus       494 ~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~  536 (590)
T PRK13409        494 KAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH  536 (590)
T ss_pred             HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence            34555544 489999999999999999999999964 6665543

>KOG0057|consensus

Probab=97.23  E-value=0.0008  Score=49.83  Aligned_cols=41  Identities=15%  Similarity=0.176  Sum_probs=37.7

Q ss_pred             cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239         14 QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus        14 ~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      ..++|+|++-|+++.+.. ||+|+++++|++...|+..++..
T Consensus       534 ~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~gth~ell~  574 (591)
T KOG0057|consen  534 MSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEYGTHSELLA  574 (591)
T ss_pred             cCCCeEEEEEecchhHhc-CCEEEEEECCeeEEeccHHHHhh
Confidence            358999999999998876 99999999999999999999876

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.22  E-value=0.00058  Score=45.68  Aligned_cols=55  Identities=13%  Similarity=0.087  Sum_probs=46.0

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCce
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGY   61 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~   61 (97)
                      .++..+.+ +|.+|++++||+..+.+.||++-+|.=|..+..++.+++...+...|
T Consensus       199 RLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~PhHPY  254 (330)
T COG4170         199 RLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTMPHHPY  254 (330)
T ss_pred             HHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhcCCCCch
Confidence            34555555 48999999999999999999999999999999999999887665544

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=97.20  E-value=0.0011  Score=54.26  Aligned_cols=40  Identities=18%  Similarity=0.203  Sum_probs=36.1

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +++|+|++||+++.+.. ||++++|++|++...|+.+++..
T Consensus       597 ~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~~~g~~~~l~~  636 (1490)
T TIGR01271       597 SNKTRILVTSKLEHLKK-ADKILLLHEGVCYFYGTFSELQA  636 (1490)
T ss_pred             cCCeEEEEeCChHHHHh-CCEEEEEECCEEEEEcCHHHHHh
Confidence            47999999999999875 99999999999999999988754

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.0015  Score=43.84  Aligned_cols=49  Identities=10%  Similarity=0.093  Sum_probs=39.8

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhh-cCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEAL-CTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      ...+++.+.+++++||+-..+..+ .|++.+|-+|+++..|.+ ++...+.
T Consensus       187 i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~~le  236 (251)
T COG0396         187 INALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELE  236 (251)
T ss_pred             HHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHHHHH
Confidence            445666799999999988877664 399999999999999999 7665443

>PTZ00243 ABC transporter; Provisional

Probab=97.17  E-value=0.0014  Score=53.79  Aligned_cols=40  Identities=13%  Similarity=0.074  Sum_probs=35.8

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .|+|+|++||+++.+. .||++++|++|++...|+.+++..
T Consensus       831 ~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~~~G~~~~l~~  870 (1560)
T PTZ00243        831 AGKTRVLATHQVHVVP-RADYVVALGDGRVEFSGSSADFMR  870 (1560)
T ss_pred             CCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEecCHHHHHh
Confidence            4789999999999985 599999999999999999988753

>PLN03232 ABC transporter C family member; Provisional

Probab=97.17  E-value=0.0011  Score=54.19  Aligned_cols=40  Identities=18%  Similarity=0.162  Sum_probs=35.5

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .++|+|++||+++.+. .||++++|++|++...|+.+++..
T Consensus       789 ~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~~~Gt~~eL~~  828 (1495)
T PLN03232        789 KGKTRVLVTNQLHFLP-LMDRIILVSEGMIKEEGTFAELSK  828 (1495)
T ss_pred             cCCEEEEEECChhhHH-hCCEEEEEeCCEEEEecCHHHHHh
Confidence            5789999999998765 599999999999999999988753

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=97.16  E-value=0.0009  Score=54.81  Aligned_cols=40  Identities=23%  Similarity=0.196  Sum_probs=35.8

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .++|+|++||+++.+.. ||++++|++|++...|+.+++..
T Consensus       811 ~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l~~  850 (1522)
T TIGR00957       811 KNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQELLQ  850 (1522)
T ss_pred             cCCEEEEEeCChhhhhh-CCEEEEecCCeEEeeCCHHHHHh
Confidence            46899999999998876 99999999999999999888753

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>KOG0055|consensus

Probab=97.13  E-value=0.00097  Score=53.26  Aligned_cols=46  Identities=17%  Similarity=0.149  Sum_probs=40.6

Q ss_pred             hccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239         12 NSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus        12 ~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      ....|+|.|++.|.+..+.. ||.|+++++|++.+.|+.+++...-+
T Consensus      1171 ~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE~GtH~~L~~~~G 1216 (1228)
T KOG0055|consen 1171 RAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVEQGTHDELLAKRG 1216 (1228)
T ss_pred             HhhcCCcEEEEecchhhhhc-CCEEEEEECCEEEecccHHHHHhCCC
Confidence            34468999999999999987 99999999999999999999987433

>PLN03130 ABC transporter C family member; Provisional

Probab=97.11  E-value=0.0014  Score=54.05  Aligned_cols=40  Identities=18%  Similarity=0.149  Sum_probs=35.5

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .++|+|++||+++.+. .||++++|++|++...|+.+++..
T Consensus       789 ~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~e~Gt~~eL~~  828 (1622)
T PLN03130        789 RGKTRVLVTNQLHFLS-QVDRIILVHEGMIKEEGTYEELSN  828 (1622)
T ss_pred             cCCEEEEEECCHhHHH-hCCEEEEEeCCEEEEeCCHHHHHh
Confidence            4789999999998765 599999999999999999988753

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=97.05  E-value=0.00063  Score=44.76  Aligned_cols=41  Identities=5%  Similarity=-0.057  Sum_probs=29.7

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEe-CCEEeEecC
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMV-NGRLSCLGS   49 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~-~G~i~~~g~   49 (97)
                      .+.+..+ .|.++|++||+++++. .||++++|+ ++..+.+|.
T Consensus       179 ~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~  221 (225)
T PRK10247        179 IIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEAR  221 (225)
T ss_pred             HHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhh
Confidence            3445443 4889999999999986 599999994 444454443

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=97.05  E-value=0.0011  Score=43.33  Aligned_cols=33  Identities=12%  Similarity=0.055  Sum_probs=27.0

Q ss_pred             hhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239         10 RKNSQTWISFGLFYSSLEECEALCTRLAVMVNGR   43 (97)
Q Consensus        10 ~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~   43 (97)
                      ..+.+.+.|+|++||+++.+. .||++++|++|.
T Consensus       186 ~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~  218 (218)
T cd03290         186 KFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS  218 (218)
T ss_pred             HHHhcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence            344455899999999999985 699999998873

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=96.97  E-value=0.0021  Score=52.61  Aligned_cols=33  Identities=9%  Similarity=-0.061  Sum_probs=27.0

Q ss_pred             hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCC
Q psy18239          9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNG   42 (97)
Q Consensus         9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G   42 (97)
                      +.+..+ .|+|+|++||+++.+ ..||++++|++|
T Consensus       622 L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g  655 (1466)
T PTZ00265        622 INNLKGNENRITIIIAHRLSTI-RYANTIFVLSNR  655 (1466)
T ss_pred             HHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence            444443 479999999999987 579999999886

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=96.97  E-value=0.0021  Score=48.39  Aligned_cols=38  Identities=13%  Similarity=0.107  Sum_probs=32.2

Q ss_pred             CcEEEEEeCCHHHHHhhcCeEEEEe-CCEEeE-ecChHHH
Q psy18239         16 WISFGLFYSSLEECEALCTRLAVMV-NGRLSC-LGSVQHL   53 (97)
Q Consensus        16 ~~tiii~tH~~~~~~~~~d~i~~l~-~G~i~~-~g~~~~l   53 (97)
                      +.|+|++|||.+++..+||+++++. +|++.. .|+.++.
T Consensus       487 ~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y  526 (635)
T PRK11147        487 QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA  526 (635)
T ss_pred             CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence            5699999999999999999999997 798765 4666665

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=96.91  E-value=0.0015  Score=42.82  Aligned_cols=31  Identities=10%  Similarity=0.001  Sum_probs=25.7

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEE
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVM   39 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l   39 (97)
                      +.+..++|.|+|++||+++.+..+||+++.+
T Consensus       192 l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~  222 (224)
T TIGR02324       192 IAEAKARGAALIGIFHDEEVRELVADRVMDV  222 (224)
T ss_pred             HHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence            4444455899999999999999999999876

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=96.85  E-value=0.003  Score=51.72  Aligned_cols=40  Identities=13%  Similarity=0.170  Sum_probs=35.3

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeC----CEEe-EecChHHHHH
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVN----GRLS-CLGSVQHLKN   55 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~----G~i~-~~g~~~~l~~   55 (97)
                      .++|+|+++|.+..+.. ||++++|++    |+++ +.|+.+++..
T Consensus      1408 ~~~TvIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265       1408 ADKTIITIAHRIASIKR-SDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred             CCCEEEEEechHHHHHh-CCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence            57999999999998765 999999999    8855 7999999875

>PRK13409 putative ATPase RIL; Provisional

Probab=96.80  E-value=0.0025  Score=47.76  Aligned_cols=34  Identities=9%  Similarity=-0.027  Sum_probs=28.9

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCC
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNG   42 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G   42 (97)
                      .+..+.+ |.++|++||+++++..+||++++|.++
T Consensus       254 ~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~  287 (590)
T PRK13409        254 LIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE  287 (590)
T ss_pred             HHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence            3455555 899999999999999999999999763

>KOG0061|consensus

Probab=96.77  E-value=0.0015  Score=49.18  Aligned_cols=55  Identities=16%  Similarity=0.142  Sum_probs=46.8

Q ss_pred             hhhhhhhhhhccCCcEEEEEeCCH-HHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          3 IDRCQHSRKNSQTWISFGLFYSSL-EECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         3 ~~~~~~~~~~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      ..-++.++++.++|+|||++-|.+ .++..+.|++++|.+|++++.|+++++.+-+
T Consensus       207 ~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff  262 (613)
T KOG0061|consen  207 LQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFF  262 (613)
T ss_pred             HHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHH
Confidence            345677888888899999999998 4677889999999999999999999876644

>KOG0058|consensus

Probab=96.77  E-value=0.0032  Score=47.93  Aligned_cols=42  Identities=17%  Similarity=0.199  Sum_probs=38.6

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      +++|+|++.|.+..+.. +|+|+++++|++.+.|+.+++....
T Consensus       652 ~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E~G~h~eLl~~~  693 (716)
T KOG0058|consen  652 QGRTVLVIAHRLSTVRH-ADQIVVIDKGRVVEMGTHDELLSKP  693 (716)
T ss_pred             cCCeEEEEehhhhHhhh-ccEEEEEcCCeEEecccHHHHhhCc
Confidence            46999999999999987 9999999999999999999987755

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=96.76  E-value=0.0032  Score=46.66  Aligned_cols=34  Identities=6%  Similarity=-0.027  Sum_probs=28.9

Q ss_pred             cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239         14 QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG   48 (97)
Q Consensus        14 ~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g   48 (97)
                      ..++|+|++||+++.+ ..||++++|++|++...-
T Consensus       519 ~~~~tiiiisH~~~~~-~~~d~i~~l~~G~i~~~~  552 (555)
T TIGR01194       519 RQGKTIIIISHDDQYF-ELADQIIKLAAGCIVKDT  552 (555)
T ss_pred             hCCCEEEEEeccHHHH-HhCCEEEEEECCEEEEec
Confidence            4579999999999866 469999999999987643

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>KOG0054|consensus

Probab=96.66  E-value=0.0036  Score=50.83  Aligned_cols=43  Identities=16%  Similarity=0.084  Sum_probs=39.7

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      .++|+|.+-|.++.+.. ||||++|++|++.+.|+|+++.++..
T Consensus      1323 ~dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~Ll~~~~ 1365 (1381)
T KOG0054|consen 1323 KDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAELLSDKD 1365 (1381)
T ss_pred             cCCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHHHHhCCc
Confidence            47999999999999998 99999999999999999999987654

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.61  E-value=0.011  Score=39.28  Aligned_cols=49  Identities=27%  Similarity=0.286  Sum_probs=37.4

Q ss_pred             hhccCCcEEEEEeCCHHHHHhhcCeEEEEeC--CEEeEecChHHHHHhhcCc
Q psy18239         11 KNSQTWISFGLFYSSLEECEALCTRLAVMVN--GRLSCLGSVQHLKNKFAVG   60 (97)
Q Consensus        11 ~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~--G~i~~~g~~~~l~~~~~~~   60 (97)
                      --++.|+.++++||+++++.-+++++++|..  |+++..-+++ ...++...
T Consensus       178 lw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d-f~rR~aag  228 (259)
T COG4525         178 LWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD-FARRYAAG  228 (259)
T ss_pred             HHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC-HHHHhhcC
Confidence            3445699999999999999999999999965  4787776665 33444433

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=96.56  E-value=0.0085  Score=46.54  Aligned_cols=51  Identities=8%  Similarity=0.041  Sum_probs=42.9

Q ss_pred             hhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHHhh
Q psy18239          6 CQHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         6 ~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~   57 (97)
                      +..++.++..|-|+|+|.||.+.+.. ||+++=|      ..|.+++.|++++++...
T Consensus       523 i~tL~~LRDlGNTviVVEHDedti~~-AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~  579 (935)
T COG0178         523 IETLKRLRDLGNTVIVVEHDEDTIRA-ADHIIDIGPGAGEHGGEIVAEGTPEELLANP  579 (935)
T ss_pred             HHHHHHHHhcCCeEEEEecCHHHHhh-cCEEEeeCCCCCcCCCEEEEccCHHHHHhCC
Confidence            44577788889999999999998876 9999876      567899999999998755

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.54  E-value=0.0046  Score=38.90  Aligned_cols=27  Identities=7%  Similarity=-0.170  Sum_probs=23.4

Q ss_pred             CcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239         16 WISFGLFYSSLEECEALCTRLAVMVNGR   43 (97)
Q Consensus        16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~   43 (97)
                      +.|+|++||+++.. .+||++++|+++.
T Consensus       138 ~~tiiivsh~~~~~-~~~d~i~~l~~~~  164 (166)
T cd03223         138 GITVISVGHRPSLW-KFHDRVLDLDGEG  164 (166)
T ss_pred             CCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence            68999999999865 5899999998764

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=96.49  E-value=0.003  Score=40.92  Aligned_cols=39  Identities=8%  Similarity=-0.182  Sum_probs=31.0

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG   48 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g   48 (97)
                      +..+.+.+.++|++||+ .++..+||++..|.+|.+...+
T Consensus       134 l~~l~~~~~~vi~~tH~-~~l~~~~d~~~~l~~g~l~~~~  172 (200)
T cd03280         134 LEELLERGALVIATTHY-GELKAYAYKREGVENASMEFDP  172 (200)
T ss_pred             HHHHHhcCCEEEEECCH-HHHHHHHhcCCCeEEEEEEEec
Confidence            44455558899999998 4567889999999999987663

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=96.40  E-value=0.0067  Score=44.85  Aligned_cols=32  Identities=25%  Similarity=0.050  Sum_probs=28.0

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEe
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCL   47 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~   47 (97)
                      .++|+|++||+++.+. .||++++|++|++...
T Consensus       499 ~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~  530 (547)
T PRK10522        499 MGKTIFAISHDDHYFI-HADRLLEMRNGQLSEL  530 (547)
T ss_pred             CCCEEEEEEechHHHH-hCCEEEEEECCEEEEe
Confidence            4799999999997654 6999999999998866

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.38  E-value=0.0056  Score=39.47  Aligned_cols=30  Identities=7%  Similarity=-0.066  Sum_probs=23.5

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEE
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVM   39 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l   39 (97)
                      +.+..+++.++|++||+++.+ .+||++++|
T Consensus       177 l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l  206 (206)
T TIGR03608       177 LLELNDEGKTIIIVTHDPEVA-KQADRVIEL  206 (206)
T ss_pred             HHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence            445444589999999999976 579999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=96.17  E-value=0.014  Score=42.41  Aligned_cols=42  Identities=17%  Similarity=0.135  Sum_probs=38.5

Q ss_pred             cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         14 QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        14 ~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      ..|.|.+++-|.+..+.. +|.+++|++|++++.|+..++...
T Consensus       446 ~~~rttlviahrlsti~~-adeiivl~~g~i~erg~h~~ll~~  487 (497)
T COG5265         446 SAGRTTLVIAHRLSTIID-ADEIIVLDNGRIVERGTHEELLAA  487 (497)
T ss_pred             hCCCeEEEEeehhhhccC-CceEEEeeCCEEEecCcHHHHHHc
Confidence            357899999999999987 999999999999999999998765

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=96.15  E-value=0.01  Score=40.15  Aligned_cols=33  Identities=15%  Similarity=0.118  Sum_probs=31.0

Q ss_pred             CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239         16 WISFGLFYSSLEECEALCTRLAVMVNGRLSCLG   48 (97)
Q Consensus        16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g   48 (97)
                      +.++|+|||+.+++....++++.+.+|+++..|
T Consensus       223 ~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g  255 (257)
T COG1119         223 APALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG  255 (257)
T ss_pred             CceEEEEEcchhhcccccceEEEeeCCceeecc
Confidence            788999999999999999999999999998776

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=96.09  E-value=0.013  Score=39.11  Aligned_cols=34  Identities=12%  Similarity=-0.012  Sum_probs=25.7

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCC
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNG   42 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G   42 (97)
                      .+.+..+.|.++|++||+.+.+ .+||++++|.+-
T Consensus       201 ~i~~~~~~g~~vi~isH~~~~~-~~~d~i~~~~~~  234 (247)
T cd03275         201 YIREQAGPNFQFIVISLKEEFF-SKADALVGVYRD  234 (247)
T ss_pred             HHHHhccCCcEEEEEECCHHHH-hhCCeEEEEEec
Confidence            3445555588999999997655 679999988653

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=95.89  E-value=0.011  Score=38.22  Aligned_cols=32  Identities=6%  Similarity=-0.279  Sum_probs=26.2

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVM   39 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l   39 (97)
                      .+.+..++|.|+|++||+......+|++++.+
T Consensus       167 ~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         167 AMAGHCARGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             HHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence            34445556889999999999999999999876

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=95.80  E-value=0.019  Score=37.40  Aligned_cols=34  Identities=3%  Similarity=-0.053  Sum_probs=25.9

Q ss_pred             hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCC
Q psy18239          8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNG   42 (97)
Q Consensus         8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G   42 (97)
                      .+.++.++ +.++|++||+++.+. .||+++.|.+.
T Consensus       164 ~l~~~~~~~~~~iiiitH~~~~~~-~~d~i~~l~~~  198 (204)
T cd03240         164 IIEERKSQKNFQLIVITHDEELVD-AADHIYRVEKD  198 (204)
T ss_pred             HHHHHHhccCCEEEEEEecHHHHh-hCCEEEEEeeC
Confidence            34455444 789999999998765 69999988654

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.71  E-value=0.015  Score=37.65  Aligned_cols=31  Identities=6%  Similarity=-0.238  Sum_probs=24.3

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEE
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVM   39 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l   39 (97)
                      +.+..+++.|+|++||+++++.....|++.+
T Consensus       172 l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        172 LAQHAEQGGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             HHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence            4444455789999999999999977777665

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=95.68  E-value=0.021  Score=42.54  Aligned_cols=43  Identities=9%  Similarity=-0.015  Sum_probs=33.3

Q ss_pred             hhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEe-cChHH
Q psy18239         10 RKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCL-GSVQH   52 (97)
Q Consensus        10 ~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~   52 (97)
                      ..+.+...|+|+||||-.++...|++|+-++.|++..+ |..+.
T Consensus       194 ~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~  237 (530)
T COG0488         194 DYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSS  237 (530)
T ss_pred             HHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHH
Confidence            33444323999999999999999999999999987665 44444

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=95.66  E-value=0.017  Score=44.96  Aligned_cols=50  Identities=6%  Similarity=0.037  Sum_probs=41.5

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHHhh
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~   57 (97)
                      ..+..+...|-|+|++.|+++.+.. ||.|+=|      ..|.+++.|+|+++.+..
T Consensus       866 ~VL~rLvd~GnTViVIEHNLdVIk~-AD~IIDLGPeGG~~GG~iva~GTPeeva~~~  921 (935)
T COG0178         866 EVLHRLVDKGNTVIVIEHNLDVIKT-ADWIIDLGPEGGDGGGEIVASGTPEEVAKVK  921 (935)
T ss_pred             HHHHHHHhCCCEEEEEecccceEee-cCEEEEcCCCCCCCCceEEEecCHHHHHhCc
Confidence            3455677789999999999998876 9999877      467899999999998743

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=95.34  E-value=0.035  Score=36.01  Aligned_cols=31  Identities=13%  Similarity=-0.011  Sum_probs=23.8

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVN   41 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~   41 (97)
                      +.++.+ +.++|++||+++.+ .+||+++.+.+
T Consensus       160 l~~~~~-~~tiIiitH~~~~~-~~~d~v~~~~~  190 (197)
T cd03278         160 LKEFSK-ETQFIVITHRKGTM-EAADRLYGVTM  190 (197)
T ss_pred             HHHhcc-CCEEEEEECCHHHH-hhcceEEEEEe
Confidence            333433 58999999999986 57999998864

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=95.27  E-value=0.078  Score=39.58  Aligned_cols=43  Identities=9%  Similarity=-0.041  Sum_probs=34.9

Q ss_pred             hccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeE-ecChHHHHH
Q psy18239         12 NSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSC-LGSVQHLKN   55 (97)
Q Consensus        12 ~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~l~~   55 (97)
                      +.....|+|+||||..++..+|++++.+.+ .+.. .|..++..+
T Consensus       482 L~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~  525 (530)
T COG0488         482 LLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE  525 (530)
T ss_pred             HHhCCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence            555678999999999999999999999987 5544 477776554

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=95.24  E-value=0.016  Score=38.07  Aligned_cols=36  Identities=11%  Similarity=-0.020  Sum_probs=26.5

Q ss_pred             hhhhhccC-C-cEEEEEeCCHHHHHhhcC--eEEEEeCCE
Q psy18239          8 HSRKNSQT-W-ISFGLFYSSLEECEALCT--RLAVMVNGR   43 (97)
Q Consensus         8 ~~~~~~~~-~-~tiii~tH~~~~~~~~~d--~i~~l~~G~   43 (97)
                      .+....+. | .++|++||++.+...++|  ++++|.+|+
T Consensus       172 ~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~  211 (213)
T cd03277         172 MLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP  211 (213)
T ss_pred             HHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence            34444443 4 579999999988888887  577888886

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=95.12  E-value=0.026  Score=37.31  Aligned_cols=34  Identities=15%  Similarity=-0.014  Sum_probs=28.9

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecC
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGS   49 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~   49 (97)
                      .+.+++++||+ .++..+||++..+.+|++...+.
T Consensus       142 ~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~~  175 (222)
T cd03285         142 IKCFCLFATHF-HELTALADEVPNVKNLHVTALTD  175 (222)
T ss_pred             CCCeEEEEech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence            47899999995 77888999999999999877664

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00618 sbcc exonuclease SbcC

Probab=95.10  E-value=0.039  Score=43.97  Aligned_cols=35  Identities=14%  Similarity=-0.005  Sum_probs=29.4

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCC
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNG   42 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G   42 (97)
                      .+..+...|.+|+|+||+++....+|+++.++..|
T Consensus      1002 ~l~~l~~~g~~i~iisH~~~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618      1002 ILDAIREGSKMIGIISHVPEFRERIPHRILVKKTN 1036 (1042)
T ss_pred             HHHHHHhCCCEEEEEeCcHHHHHhhCCEEEEEECC
Confidence            34555556899999999999999999999999754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=94.91  E-value=0.028  Score=38.39  Aligned_cols=38  Identities=13%  Similarity=0.107  Sum_probs=28.3

Q ss_pred             cCCcEEEEEeCCHHH--H-----------HhhcCeEEEEeCCEEeEecChHHH
Q psy18239         14 QTWISFGLFYSSLEE--C-----------EALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus        14 ~~~~tiii~tH~~~~--~-----------~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      +.|.++|+++|+...  +           ..+++|+++|++|+  ..|++.++
T Consensus       217 ~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i  267 (270)
T TIGR02858       217 HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV  267 (270)
T ss_pred             hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence            368999999997654  4           36789999999876  55655443

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>TIGR00634 recN DNA repair protein RecN

Probab=94.86  E-value=0.042  Score=41.07  Aligned_cols=33  Identities=3%  Similarity=-0.249  Sum_probs=26.6

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGR   43 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~   43 (97)
                      +..+.+ +.+||++||++..+. +||+++++.+|.
T Consensus       487 l~~l~~-~~~vi~iTH~~~~~~-~ad~~~~l~k~~  519 (563)
T TIGR00634       487 LAQLSE-RHQVLCVTHLPQVAA-HADAHFKVEKEG  519 (563)
T ss_pred             HHHHhc-CCEEEEEEChHHHHH-hcCeEEEEEEcc
Confidence            444443 789999999998875 799999998764

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=94.78  E-value=0.061  Score=34.35  Aligned_cols=32  Identities=13%  Similarity=0.015  Sum_probs=25.0

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVN   41 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~   41 (97)
                      +.+..+.|.++|++||+++.+. .+|+++.+.+
T Consensus       141 L~~~~~~g~tiIiiSH~~~~~~-~adrvi~i~~  172 (178)
T cd03239         141 IKEMAKHTSQFIVITLKKEMFE-NADKLIGVLF  172 (178)
T ss_pred             HHHHHhCCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence            4444445789999999998765 7999998865

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>KOG0056|consensus

Probab=94.72  E-value=0.062  Score=40.25  Aligned_cols=48  Identities=15%  Similarity=0.073  Sum_probs=39.9

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      +..+.. ++|-|++.|.+..+-. +|.++++++|++++.|..+++..+.+
T Consensus       717 L~rlca-~RTtIVvAHRLSTivn-AD~ILvi~~G~IvErG~HeeLl~rdg  764 (790)
T KOG0056|consen  717 LARLCA-NRTTIVVAHRLSTIVN-ADLILVISNGRIVERGRHEELLKRDG  764 (790)
T ss_pred             HHHHhc-CCceEEEeeeehheec-ccEEEEEeCCeEeecCcHHHHHhccC
Confidence            344443 5788999999999887 99999999999999999999876533

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.59  E-value=0.047  Score=35.39  Aligned_cols=32  Identities=6%  Similarity=-0.340  Sum_probs=24.5

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVN   41 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~   41 (97)
                      .+.+..+++.|+|++||+++++..  |+++-+..
T Consensus       169 ~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~~  200 (207)
T PRK13539        169 LIRAHLAQGGIVIAATHIPLGLPG--ARELDLGP  200 (207)
T ss_pred             HHHHHHHCCCEEEEEeCCchhhcc--CcEEeecC
Confidence            344444568999999999999887  88877743

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=94.33  E-value=0.07  Score=36.26  Aligned_cols=27  Identities=4%  Similarity=-0.188  Sum_probs=23.2

Q ss_pred             CcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239         16 WISFGLFYSSLEECEALCTRLAVMVNGR   43 (97)
Q Consensus        16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~   43 (97)
                      +.++|++||++.. ..+||+++.+.+|.
T Consensus       223 ~~tii~isH~~~~-~~~~d~~~~l~~~~  249 (276)
T cd03241         223 SHQVLCITHLPQV-AAMADNHFLVEKEV  249 (276)
T ss_pred             CCEEEEEechHHH-HHhcCcEEEEEEec
Confidence            6899999999985 46899999998764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=94.27  E-value=0.037  Score=35.89  Aligned_cols=27  Identities=4%  Similarity=-0.146  Sum_probs=23.2

Q ss_pred             CcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239         16 WISFGLFYSSLEECEALCTRLAVMVNGR   43 (97)
Q Consensus        16 ~~tiii~tH~~~~~~~~~d~i~~l~~G~   43 (97)
                      +.+++++||+++++..+ |+|.+|..++
T Consensus       166 ~~~iii~th~~~~i~~~-d~v~~~~~~~  192 (198)
T cd03276         166 RQFIFITPQDISGLASS-DDVKVFRMKD  192 (198)
T ss_pred             cEEEEEECCcccccccc-cceeEEEecC
Confidence            46899999999999985 9999998754

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=94.22  E-value=0.079  Score=38.65  Aligned_cols=34  Identities=6%  Similarity=0.092  Sum_probs=31.0

Q ss_pred             EEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239         18 SFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus        18 tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      ||++.+||+++  .+||++..+.+|+++..++.++.
T Consensus       308 TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la~~  341 (438)
T PRK07721        308 TVLVDGDDMNE--PIADTVRGILDGHFVLDRQLANK  341 (438)
T ss_pred             EEEEECCCCCc--hhhhhEEEecCEEEEEeccHHHC
Confidence            99999999995  88999999999999999888774

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=94.05  E-value=0.084  Score=34.36  Aligned_cols=32  Identities=3%  Similarity=0.051  Sum_probs=28.7

Q ss_pred             ccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239         13 SQTWISFGLFYSSLEECEALCTRLAVMVNGRL   44 (97)
Q Consensus        13 ~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i   44 (97)
                      +++..+++.+|||.+++-+++|+++-+..|.+
T Consensus       181 ~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~  212 (223)
T COG4619         181 REQNVAVLWITHDKDQAIRHADKVITLQPGHA  212 (223)
T ss_pred             hhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence            35679999999999999999999999998864

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=94.04  E-value=0.14  Score=33.58  Aligned_cols=31  Identities=13%  Similarity=0.069  Sum_probs=23.2

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVN   41 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~   41 (97)
                      +.+.. ++.++|++||+. ++..+||++++|..
T Consensus       174 l~~~~-~~~~~iivs~~~-~~~~~~d~v~~~~~  204 (212)
T cd03274         174 IKERT-KNAQFIVISLRN-NMFELADRLVGIYK  204 (212)
T ss_pred             HHHHc-CCCEEEEEECcH-HHHHhCCEEEEEEe
Confidence            44443 457899999985 56778999999865

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=93.95  E-value=0.029  Score=36.26  Aligned_cols=42  Identities=10%  Similarity=-0.138  Sum_probs=31.7

Q ss_pred             hhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHH
Q psy18239         10 RKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQH   52 (97)
Q Consensus        10 ~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~   52 (97)
                      ..+.+.+.++|++||+.+.+. .++++..+..+++...+...+
T Consensus       135 ~~l~~~~~~vi~~tH~~~~~~-~~~~~~~l~~~~~~~~~~~~~  176 (202)
T cd03243         135 EHLLEKGCRTLFATHFHELAD-LPEQVPGVKNLHMEELITTGG  176 (202)
T ss_pred             HHHHhcCCeEEEECChHHHHH-HhhcCCCeEEEEEEEEecCCe
Confidence            344455889999999987665 588888888888887776533

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>KOG0062|consensus

Probab=93.68  E-value=0.12  Score=38.53  Aligned_cols=36  Identities=19%  Similarity=0.142  Sum_probs=31.4

Q ss_pred             hhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeE
Q psy18239         11 KNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSC   46 (97)
Q Consensus        11 ~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~   46 (97)
                      .+..-+..|+|+|||.+++...|+.+++.++|++..
T Consensus       524 Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~  559 (582)
T KOG0062|consen  524 ALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTP  559 (582)
T ss_pred             HHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence            344446789999999999999999999999999876

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=93.53  E-value=0.18  Score=33.25  Aligned_cols=30  Identities=10%  Similarity=-0.107  Sum_probs=21.7

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEe
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMV   40 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~   40 (97)
                      +.+..+ +.++|++||+.+ +..+||++++|.
T Consensus       205 l~~~~~-~~~ii~~~h~~~-~~~~~d~i~~l~  234 (243)
T cd03272         205 IKELSD-GAQFITTTFRPE-LLEVADKFYGVK  234 (243)
T ss_pred             HHHHhC-CCEEEEEecCHH-HHhhCCEEEEEE
Confidence            444433 678888888855 678999998874

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=93.52  E-value=0.14  Score=39.05  Aligned_cols=27  Identities=11%  Similarity=-0.149  Sum_probs=23.1

Q ss_pred             cCCcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239         14 QTWISFGLFYSSLEECEALCTRLAVMVN   41 (97)
Q Consensus        14 ~~~~tiii~tH~~~~~~~~~d~i~~l~~   41 (97)
                      +.+.|+|++||+++.+ .+||++++|+.
T Consensus       627 ~~~~tvI~isH~~~~~-~~~d~il~l~~  653 (659)
T TIGR00954       627 EFGITLFSVSHRKSLW-KYHEYLLYMDG  653 (659)
T ss_pred             HcCCEEEEEeCchHHH-HhCCEEEEEeC
Confidence            3489999999999986 56999999963

>KOG2355|consensus

Probab=93.51  E-value=0.13  Score=34.55  Aligned_cols=46  Identities=13%  Similarity=0.065  Sum_probs=36.8

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHH
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQH   52 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~   52 (97)
                      ..+++-.+ +|.||+..||-.+=++.++.+++.|..|++...-+.+.
T Consensus       188 eFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~  234 (291)
T KOG2355|consen  188 EFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQK  234 (291)
T ss_pred             HHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccch
Confidence            33444444 59999999999999999999999999999987544444

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=93.48  E-value=0.16  Score=31.74  Aligned_cols=25  Identities=16%  Similarity=0.032  Sum_probs=21.8

Q ss_pred             CcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239         16 WISFGLFYSSLEECEALCTRLAVMVN   41 (97)
Q Consensus        16 ~~tiii~tH~~~~~~~~~d~i~~l~~   41 (97)
                      +.++|++||+.+.+. .+|+++.|..
T Consensus       131 ~~~vii~TH~~~~~~-~~d~~~~l~~  155 (162)
T cd03227         131 GAQVIVITHLPELAE-LADKLIHIKK  155 (162)
T ss_pred             CCEEEEEcCCHHHHH-hhhhEEEEEE
Confidence            789999999999876 5899998864

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=93.15  E-value=0.029  Score=40.79  Aligned_cols=38  Identities=21%  Similarity=0.011  Sum_probs=31.9

Q ss_pred             hhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239         10 RKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG   48 (97)
Q Consensus        10 ~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g   48 (97)
                      -.+++.|+||+.+|||-..... +||++.+++|++....
T Consensus       493 p~LK~qGKTI~aIsHDd~YF~~-ADrll~~~~G~~~e~t  530 (546)
T COG4615         493 PLLKEQGKTIFAISHDDHYFIH-ADRLLEMRNGQLSELT  530 (546)
T ss_pred             HHHHHhCCeEEEEecCchhhhh-HHHHHHHhcCceeecc
Confidence            3456679999999999988764 9999999999987754

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=93.05  E-value=0.066  Score=35.25  Aligned_cols=43  Identities=9%  Similarity=-0.140  Sum_probs=31.2

Q ss_pred             hhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239         10 RKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus        10 ~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      ..+.+. +.++|++||+. ++..+++++..+.+|++...+..+++
T Consensus       136 ~~l~~~~~~~vi~~TH~~-~l~~l~~~~~~v~~~~~~~~~~~~~l  179 (216)
T cd03284         136 EYLHEKIGAKTLFATHYH-ELTELEGKLPRVKNFHVAVKEKGGGV  179 (216)
T ss_pred             HHHHhccCCcEEEEeCcH-HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence            334444 78999999996 45668898877788888776655443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=92.97  E-value=0.16  Score=39.77  Aligned_cols=41  Identities=17%  Similarity=0.159  Sum_probs=32.6

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHH---------hhcCeEEEEeCCEEeEec
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECE---------ALCTRLAVMVNGRLSCLG   48 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~---------~~~d~i~~l~~G~i~~~g   48 (97)
                      .++..++.|.+++++||+++++.         ..|++.++|.+|+....+
T Consensus       677 ~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~  726 (818)
T PRK13830        677 WLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPG  726 (818)
T ss_pred             HHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccc
Confidence            35556667899999999999986         579999999998875444

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=92.49  E-value=0.31  Score=32.53  Aligned_cols=25  Identities=8%  Similarity=-0.271  Sum_probs=19.6

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEe
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMV   40 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~   40 (97)
                      +|.++|++||+. ++...||+++-+.
T Consensus       218 ~g~~ii~iSH~~-~~~~~~d~v~~~~  242 (251)
T cd03273         218 KGSQFIVVSLKE-GMFNNANVLFRTR  242 (251)
T ss_pred             CCCEEEEEECCH-HHHHhCCEEEEEE
Confidence            478999999995 5555799997653

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK10869 recombination and repair protein; Provisional

Probab=92.41  E-value=0.27  Score=36.88  Aligned_cols=33  Identities=3%  Similarity=-0.186  Sum_probs=25.8

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCC
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNG   42 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G   42 (97)
                      .+..+.+ +.++|++||++..+ .+||+.+.+.++
T Consensus       476 ~l~~l~~-~~qvi~iTH~~~~~-~~ad~~~~v~k~  508 (553)
T PRK10869        476 LLRQLGE-STQVMCVTHLPQVA-GCGHQHFFVSKE  508 (553)
T ss_pred             HHHHHhc-CCEEEEEecCHHHH-HhCCEEEEEecc
Confidence            3444543 58999999999876 689999999874

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=91.56  E-value=0.34  Score=35.68  Aligned_cols=24  Identities=21%  Similarity=0.141  Sum_probs=20.7

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEE
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVM   39 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l   39 (97)
                      .++|+|++||+++.+. .||++++|
T Consensus       506 ~~~t~i~itH~~~~~~-~~d~i~~l  529 (529)
T TIGR02857       506 QGRTVLLVTHRLALAE-RADRIVVL  529 (529)
T ss_pred             CCCEEEEEecCHHHHH-hCCEEEeC
Confidence            4799999999998875 59999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK03918 chromosome segregation protein; Provisional

Probab=91.06  E-value=0.41  Score=37.35  Aligned_cols=28  Identities=4%  Similarity=-0.173  Sum_probs=22.6

Q ss_pred             ccCCcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239         13 SQTWISFGLFYSSLEECEALCTRLAVMVN   41 (97)
Q Consensus        13 ~~~~~tiii~tH~~~~~~~~~d~i~~l~~   41 (97)
                      ...+.++|++||+++. ...||+++.|.+
T Consensus       841 ~~~~~~iiiith~~~~-~~~~d~~~~l~~  868 (880)
T PRK03918        841 LRKIPQVIIVSHDEEL-KDAADYVIRVSL  868 (880)
T ss_pred             HhcCCEEEEEECCHHH-HHhCCeEEEEEe
Confidence            3446799999999875 567999999974

>PRK13695 putative NTPase; Provisional

Probab=90.93  E-value=0.23  Score=31.28  Aligned_cols=38  Identities=8%  Similarity=-0.032  Sum_probs=29.4

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEe
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCL   47 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~   47 (97)
                      +....+.+.++|+++|+. .+..++|++..+.+|++...
T Consensus       119 l~~~~~~~~~~i~v~h~~-~~~~~~~~i~~~~~~~i~~~  156 (174)
T PRK13695        119 VEEVLDSEKPVIATLHRR-SVHPFVQEIKSRPGGRVYEL  156 (174)
T ss_pred             HHHHHhCCCeEEEEECch-hhHHHHHHHhccCCcEEEEE
Confidence            334445689999999984 55678999999999987654

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=90.39  E-value=0.22  Score=31.29  Aligned_cols=33  Identities=9%  Similarity=-0.194  Sum_probs=25.2

Q ss_pred             hhhhccCCcEEEEEeCCHHH---------HHhhcCeEEEEeC
Q psy18239          9 SRKNSQTWISFGLFYSSLEE---------CEALCTRLAVMVN   41 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~---------~~~~~d~i~~l~~   41 (97)
                      +..+.+.|.++++++|+...         +..+||.++.|+.
T Consensus       123 ~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~~  164 (187)
T cd01124         123 LFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLRL  164 (187)
T ss_pred             HHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEEE
Confidence            34455568999999998765         6788898888863

A related protein is found in archaea.

>KOG0059|consensus

Probab=89.62  E-value=0.78  Score=36.32  Aligned_cols=56  Identities=23%  Similarity=0.406  Sum_probs=45.0

Q ss_pred             ccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCceEEEEEeCCCchhHHHHHHHhhhcccee
Q psy18239         13 SQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVGYQLQIKFPPTTQQNIKWFVAAYLKGNTR   88 (97)
Q Consensus        13 ~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (97)
                      .+.+++|++           +||+++|.+|++.   ++.-+.+..+..|.+.+..      .+..++.+..|+..+
T Consensus         4 ~k~~R~i~~-----------~Dri~i~s~g~l~---s~~~lk~~~g~gy~l~l~~------~~~~~~~~~~p~~~~   59 (885)
T KOG0059|consen    4 RKEGRTIIL-----------GDRIVIMSHGKLK---SSLFLKRKLGSGYHLTLVL------QVTLFIQQHIPDARL   59 (885)
T ss_pred             cccCCEEEE-----------ecceeheeCCeec---cchHHHHhhCCCceEEeHH------HHHHHHHhhCcccee
Confidence            345788888           9999999999988   7777778888888887776      667777888887654

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=88.79  E-value=0.29  Score=31.48  Aligned_cols=29  Identities=3%  Similarity=-0.247  Sum_probs=20.9

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEE
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLA   37 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~   37 (97)
                      .+.+..+.+.++|++||+...+.. ||.-.
T Consensus       169 ~l~~~~~~~~tiii~sh~~~~~~~-~d~~~  197 (200)
T PRK13540        169 KIQEHRAKGGAVLLTSHQDLPLNK-ADYEE  197 (200)
T ss_pred             HHHHHHHcCCEEEEEeCCchhccc-cchhh
Confidence            344444568999999999988765 77643

>PHA02562 46 endonuclease subunit; Provisional

Probab=88.67  E-value=0.62  Score=34.49  Aligned_cols=29  Identities=14%  Similarity=0.005  Sum_probs=22.9

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeC-CEE
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVN-GRL   44 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~-G~i   44 (97)
                      .+.++|++||+.... ..+|++++|.+ |+.
T Consensus       526 ~~~~iiiish~~~~~-~~~d~~~~l~~~~~~  555 (562)
T PHA02562        526 KDTNVFVISHKDHDP-QKFDRHLKMEKVGRF  555 (562)
T ss_pred             CCCeEEEEECchhch-hhhhcEEEEEEECCe
Confidence            478999999997655 56899999976 543

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=88.54  E-value=0.3  Score=31.29  Aligned_cols=24  Identities=8%  Similarity=-0.172  Sum_probs=18.6

Q ss_pred             hccCCcEEEEEeCCHHHHHhhcCeE
Q psy18239         12 NSQTWISFGLFYSSLEECEALCTRL   36 (97)
Q Consensus        12 ~~~~~~tiii~tH~~~~~~~~~d~i   36 (97)
                      ..+.+.|+|++||+++.+.. +|.+
T Consensus       169 ~~~~~~tiii~sh~~~~i~~-~~~~  192 (195)
T PRK13541        169 KANSGGIVLLSSHLESSIKS-AQIL  192 (195)
T ss_pred             HHhCCCEEEEEeCCccccch-hhee
Confidence            33468999999999998776 6654

>KOG0065|consensus

Probab=87.71  E-value=0.4  Score=39.46  Aligned_cols=50  Identities=12%  Similarity=0.018  Sum_probs=39.8

Q ss_pred             hhhhhhhhhccCCcEEEEEeCCHH-HHHhhcCeEEEEeCC-EEeEecChHHH
Q psy18239          4 DRCQHSRKNSQTWISFGLFYSSLE-ECEALCTRLAVMVNG-RLSCLGSVQHL   53 (97)
Q Consensus         4 ~~~~~~~~~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G-~i~~~g~~~~l   53 (97)
                      ..++.++++.+.|.||+.+-|.+. ++.+..|++++|++| +.++.|+..+-
T Consensus       968 ~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~ 1019 (1391)
T KOG0065|consen  968 IVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGEN 1019 (1391)
T ss_pred             HHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccc
Confidence            346678888889999999999985 355679999999655 78888877663

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=87.44  E-value=1.2  Score=28.87  Aligned_cols=30  Identities=10%  Similarity=-0.159  Sum_probs=21.1

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhh--cCeEEE
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEAL--CTRLAV   38 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~--~d~i~~   38 (97)
                      +..+.+.+.++|++||+++.+..+  .+++..
T Consensus       131 l~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~  162 (199)
T cd03283         131 LKFLKNKNTIGIISTHDLELADLLDLDSAVRN  162 (199)
T ss_pred             HHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEE
Confidence            344445589999999999988775  344433

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK02224 chromosome segregation protein; Provisional

Probab=86.73  E-value=1.3  Score=34.81  Aligned_cols=33  Identities=6%  Similarity=-0.132  Sum_probs=24.7

Q ss_pred             hhhccCC-cEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239         10 RKNSQTW-ISFGLFYSSLEECEALCTRLAVMVNGR   43 (97)
Q Consensus        10 ~~~~~~~-~tiii~tH~~~~~~~~~d~i~~l~~G~   43 (97)
                      ..+...| .+||++||+...+. .||+++.+.+..
T Consensus       837 ~~~~~~~~~qviiish~~~~~~-~ad~~~~~~~~~  870 (880)
T PRK02224        837 ESMRRLGVEQIVVVSHDDELVG-AADDLVRVEKDP  870 (880)
T ss_pred             HHHHhcCCCeEEEEECChHHHH-hcCeeEEeecCC
Confidence            3444444 47999999999886 599999997543

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=85.72  E-value=0.73  Score=29.51  Aligned_cols=28  Identities=11%  Similarity=-0.336  Sum_probs=19.1

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEE
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAV   38 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~   38 (97)
                      +.+..++|.|+|++||+...+.  |++++.
T Consensus       170 l~~~~~~~~tii~~sH~~~~~~--~~~~~~  197 (198)
T TIGR01189       170 LRAHLARGGIVLLTTHQDLGLV--EARELR  197 (198)
T ss_pred             HHHHHhCCCEEEEEEccccccc--ceEEee
Confidence            4444456889999999986543  466543

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=85.21  E-value=1.6  Score=32.64  Aligned_cols=34  Identities=9%  Similarity=-0.014  Sum_probs=28.8

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEe
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMV   40 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~   40 (97)
                      ...+++.+.+++++++.||+..+..++|-+.++-
T Consensus       254 r~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y  287 (591)
T COG1245         254 RVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY  287 (591)
T ss_pred             HHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence            3455666668999999999999999999998885

>KOG0927|consensus

Probab=84.16  E-value=1.6  Score=33.02  Aligned_cols=42  Identities=14%  Similarity=0.128  Sum_probs=33.2

Q ss_pred             hccCCc-EEEEEeCCHHHHHhhcCeEEEEeCCEEe-EecChHHH
Q psy18239         12 NSQTWI-SFGLFYSSLEECEALCTRLAVMVNGRLS-CLGSVQHL   53 (97)
Q Consensus        12 ~~~~~~-tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~l   53 (97)
                      +.+... ++++++|+-+.+..+|.+|+-+..++.. +.|+.+..
T Consensus       264 L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy  307 (614)
T KOG0927|consen  264 LAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQY  307 (614)
T ss_pred             HHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHHH
Confidence            444444 8999999999999999999999999854 55555554

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=83.82  E-value=0.74  Score=30.06  Aligned_cols=33  Identities=12%  Similarity=-0.044  Sum_probs=24.3

Q ss_pred             hhhhhccCCcEEEEEeCCH---------HHHHhhcCeEEEEe
Q psy18239          8 HSRKNSQTWISFGLFYSSL---------EECEALCTRLAVMV   40 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~---------~~~~~~~d~i~~l~   40 (97)
                      .+..+++.+.|+++++|..         ..+..+||.+++|+
T Consensus       136 l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~  177 (224)
T TIGR03880       136 FYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK  177 (224)
T ss_pred             HHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence            3444566789999999952         33677889998884

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=83.81  E-value=0.94  Score=33.39  Aligned_cols=32  Identities=13%  Similarity=0.110  Sum_probs=24.5

Q ss_pred             hhhhccCCcEEEEEeCCHHH---------HHhhcCeEEEEe
Q psy18239          9 SRKNSQTWISFGLFYSSLEE---------CEALCTRLAVMV   40 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~---------~~~~~d~i~~l~   40 (97)
                      ...+++.|.|+|+++|+.+.         ...+||.++.|+
T Consensus       150 i~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~  190 (484)
T TIGR02655       150 VARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR  190 (484)
T ss_pred             HHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence            44456679999999998764         266889998886

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=83.46  E-value=1  Score=28.75  Aligned_cols=35  Identities=11%  Similarity=-0.180  Sum_probs=22.8

Q ss_pred             hhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEe
Q psy18239         10 RKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLS   45 (97)
Q Consensus        10 ~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~   45 (97)
                      +.+.+ .+.+++++||+++ +..+++...-+..+.+.
T Consensus       105 ~~l~~~~~~~iii~TH~~~-l~~~~~~~~~v~~~~~~  140 (185)
T smart00534      105 EYLLEKIGALTLFATHYHE-LTKLADEHPGVRNLHMS  140 (185)
T ss_pred             HHHHhcCCCeEEEEecHHH-HHHHhhcCccceEEEEE
Confidence            33444 3789999999995 66778764444444443

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=82.52  E-value=1.6  Score=28.56  Aligned_cols=26  Identities=4%  Similarity=-0.286  Sum_probs=20.1

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcC
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCT   34 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d   34 (97)
                      +..+.+.+.++|++||+.+.+..+++
T Consensus       134 l~~l~~~~~~~i~~TH~~~l~~~~~~  159 (204)
T cd03282         134 LECLIKKESTVFFATHFRDIAAILGN  159 (204)
T ss_pred             HHHHHhcCCEEEEECChHHHHHHhhc
Confidence            44455568999999999999887654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0065|consensus

Probab=81.09  E-value=3.1  Score=34.64  Aligned_cols=54  Identities=13%  Similarity=0.026  Sum_probs=40.7

Q ss_pred             hhhhhhhhcc-CCcEEEEEeCCH-HHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          5 RCQHSRKNSQ-TWISFGLFYSSL-EECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         5 ~~~~~~~~~~-~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      .+.-++++.+ .+.|.+++-+.. +++-.+.|.+.+|.+|++++.|+.++...-+.
T Consensus       299 iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe  354 (1391)
T KOG0065|consen  299 IIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFE  354 (1391)
T ss_pred             HHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHH
Confidence            3444555554 366777766655 66778999999999999999999999876554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	97
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	3e-07

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 45.2 bits (108), Expect = 3e-07
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 22  FYSS--LEECEALCTRLAVMVNGRLSCLGSVQHLKNKF 57
             SS  + E E LC R+A++ NG +   G+V+ LK ++
Sbjct: 200 LVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 237

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	97
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.88
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.87
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.82
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.8
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.79
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.78
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.76
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.76
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.75
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.75
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.75
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.75
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.74
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.73
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.73
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.72
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.72
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.63
1g6h_A	257	High-affinity branched-chain amino acid transport	98.62
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.62
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.57
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.53
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.51
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.47
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.47
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.45
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.43
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.43
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.43
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.42
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.34
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.33
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.26
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.25
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.23
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.21
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.2
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.18
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.16
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.15
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.14
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.14
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.13
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.12
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.11
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.09
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.06
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.05
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.97
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.95
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.95
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.95
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.89
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.89
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	97.87
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.79
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.75
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.72
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.7
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.64
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.64
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.54
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.45
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.38
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.36
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.36
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	97.21
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.16
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.14
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.14
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.94
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.61
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.44
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.4
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.37
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.09
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.71
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.68
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.55
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.46
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	95.44
4a74_A	231	DNA repair and recombination protein RADA; hydrola	94.99
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	94.77
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	94.73
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	94.37
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	94.16
1e69_A	322	Chromosome segregation SMC protein; structural mai	93.76
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	93.68
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	91.31
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	91.17
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	90.33
2cvh_A	220	DNA repair and recombination protein RADB; filamen	89.5
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	86.03
3kta_B	173	Chromosome segregation protein SMC; structural mai	85.14
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	84.68
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	84.36
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	83.0
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	82.94
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	82.92
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	82.39

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.88  E-value=2.2e-09  Score=74.57  Aligned_cols=51  Identities=16%  Similarity=0.244  Sum_probs=44.1

Q ss_pred             hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      ...++++.+ .|.|+|++||+++++..+|||+++|++|+++..|++.+++..
T Consensus       203 ~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~  254 (366)
T 3tui_C          203 LELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH  254 (366)
T ss_dssp             HHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSS
T ss_pred             HHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            445566654 489999999999999999999999999999999999998654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.87  E-value=3.4e-09  Score=73.96  Aligned_cols=51  Identities=14%  Similarity=0.092  Sum_probs=43.9

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      ..++.+.+ .|.|+|++|||++++..+|||+++|++|++...|++++++..+
T Consensus       174 ~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p  225 (381)
T 3rlf_A          174 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP  225 (381)
T ss_dssp             HHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred             HHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence            34555544 4899999999999999999999999999999999999987644

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.82  E-value=9.1e-09  Score=71.33  Aligned_cols=45  Identities=24%  Similarity=0.160  Sum_probs=41.2

Q ss_pred             ccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239         13 SQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus        13 ~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      ++.|.|+|++|||++++..+|||+++|++|++...|+++++...+
T Consensus       186 ~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p  230 (359)
T 3fvq_A          186 RANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP  230 (359)
T ss_dssp             HHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             HhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence            446899999999999999999999999999999999999987654

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.80  E-value=1.3e-08  Score=67.71  Aligned_cols=50  Identities=4%  Similarity=0.092  Sum_probs=43.0

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      ..+.++.++|.|+|++||+++++..+||++++|++|+++..|+++++...
T Consensus       194 ~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  243 (262)
T 1b0u_A          194 RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN  243 (262)
T ss_dssp             HHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            34555555589999999999999999999999999999999999988653

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.79  E-value=1.6e-08  Score=67.38  Aligned_cols=50  Identities=10%  Similarity=0.113  Sum_probs=43.0

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      ..+.++.++|.|+|++||+++++..+||++++|++|+++..|+++++...
T Consensus       200 ~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  249 (263)
T 2olj_A          200 SVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR  249 (263)
T ss_dssp             HHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            34555555589999999999999999999999999999999999988653

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.78  E-value=4.4e-09  Score=70.48  Aligned_cols=51  Identities=14%  Similarity=0.169  Sum_probs=43.4

Q ss_pred             hhhhhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          6 CQHSRKNS-QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         6 ~~~~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +..+.++. ++|.|+|++||+++++..+||++++|++|+++..|+++++...
T Consensus       183 ~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  234 (275)
T 3gfo_A          183 MKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE  234 (275)
T ss_dssp             HHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred             HHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence            34455554 4589999999999999999999999999999999999997653

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.76  E-value=1.5e-08  Score=70.07  Aligned_cols=50  Identities=16%  Similarity=0.257  Sum_probs=42.8

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      ..++++.+ .|.|+|++|||++++..+||++++|++|++...|++++++..
T Consensus       181 ~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~  231 (353)
T 1oxx_K          181 ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN  231 (353)
T ss_dssp             HHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            34555543 489999999999999999999999999999999999998654

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.76  E-value=1.4e-08  Score=70.70  Aligned_cols=49  Identities=22%  Similarity=0.215  Sum_probs=42.5

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .++++.+ .|.|+|++|||++++..+||++++|++|++...|++.+++..
T Consensus       181 ~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~  230 (372)
T 1g29_1          181 ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK  230 (372)
T ss_dssp             HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence            3455544 489999999999999999999999999999999999998764

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.75  E-value=1.5e-08  Score=70.30  Aligned_cols=50  Identities=18%  Similarity=0.198  Sum_probs=42.8

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      .++++.+ .|.|+|++|||++++..+||++++|++|++...|++++++..+
T Consensus       175 ~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p  225 (359)
T 2yyz_A          175 EIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP  225 (359)
T ss_dssp             HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence            3445544 4899999999999999999999999999999999999987643

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.75  E-value=1.5e-08  Score=70.25  Aligned_cols=50  Identities=18%  Similarity=0.213  Sum_probs=42.8

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      ..++++.+ .|.|+|++|||++++..+||++++|++|++...|++++++..
T Consensus       174 ~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~  224 (362)
T 2it1_A          174 AELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK  224 (362)
T ss_dssp             HHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            33455544 489999999999999999999999999999999999998654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.75  E-value=1.6e-08  Score=69.95  Aligned_cols=49  Identities=16%  Similarity=0.238  Sum_probs=42.5

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .++++.+ .|.|+|++|||++++..+||++++|++|++...|+++++...
T Consensus       187 ~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~  236 (355)
T 1z47_A          187 FVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK  236 (355)
T ss_dssp             HHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            3455544 489999999999999999999999999999999999998654

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.75  E-value=1.5e-08  Score=70.46  Aligned_cols=49  Identities=22%  Similarity=0.199  Sum_probs=42.5

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .++++.+ .|.|+|++|||++++..+||++++|++|++...|++.+++..
T Consensus       183 ~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~  232 (372)
T 1v43_A          183 EIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR  232 (372)
T ss_dssp             HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred             HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            3455544 389999999999999999999999999999999999998754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.74  E-value=1.9e-08  Score=67.01  Aligned_cols=49  Identities=12%  Similarity=0.217  Sum_probs=41.7

Q ss_pred             hhhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239          6 CQHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK   54 (97)
Q Consensus         6 ~~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~   54 (97)
                      ...+.++.++ +.|+|++|||++++..+||++++|++|+++..|+++++.
T Consensus       187 ~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~  236 (266)
T 4g1u_C          187 LRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL  236 (266)
T ss_dssp             HHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred             HHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence            3445555544 679999999999999999999999999999999998874

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.73  E-value=2.6e-08  Score=66.05  Aligned_cols=51  Identities=27%  Similarity=0.461  Sum_probs=43.5

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      ..+.++.++|.|+|++||+++++..+||++++|++|++...|+++++...+
T Consensus       187 ~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  237 (256)
T 1vpl_A          187 KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY  237 (256)
T ss_dssp             HHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred             HHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHhc
Confidence            345555556899999999999999999999999999999999999886543

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.73  E-value=1.4e-08  Score=70.10  Aligned_cols=50  Identities=16%  Similarity=0.233  Sum_probs=42.8

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      ..++++.+ .|.|+|++|||++++..+||++++|++|++...|+++++...
T Consensus       168 ~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~  218 (348)
T 3d31_A          168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK  218 (348)
T ss_dssp             HHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            34555543 489999999999999999999999999999999999998654

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.72  E-value=2.6e-08  Score=65.49  Aligned_cols=50  Identities=24%  Similarity=0.248  Sum_probs=42.7

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      ..+.++.+ .|.|+|++||+++++..+||++++|++|++...|+++++...
T Consensus       167 ~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  217 (240)
T 2onk_A          167 EELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA  217 (240)
T ss_dssp             HHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            34555544 489999999999999999999999999999999999998654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.72  E-value=2.3e-08  Score=65.63  Aligned_cols=48  Identities=15%  Similarity=0.038  Sum_probs=41.2

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK   54 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~   54 (97)
                      ..+.++.++|.|+|++||+++++..+||++++|++|++...|+++++.
T Consensus       180 ~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  227 (240)
T 1ji0_A          180 EVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL  227 (240)
T ss_dssp             HHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred             HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence            344555446899999999999999999999999999999999988875

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.63  E-value=6.6e-08  Score=63.86  Aligned_cols=48  Identities=13%  Similarity=0.086  Sum_probs=40.9

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK   54 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~   54 (97)
                      ..+.++.++|.|+|++||+++.+..+||++++|++|++...|+++++.
T Consensus       174 ~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  221 (249)
T 2qi9_C          174 KILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL  221 (249)
T ss_dssp             HHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred             HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            345555545899999999999999999999999999999999887763

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.62  E-value=2.7e-08  Score=65.88  Aligned_cols=46  Identities=22%  Similarity=0.236  Sum_probs=40.0

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQH   52 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~   52 (97)
                      ..+.++.++|.|+|++||+++++..+||++++|++|+++..|++++
T Consensus       194 ~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  239 (257)
T 1g6h_A          194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE  239 (257)
T ss_dssp             HHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred             HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence            3455555558999999999999999999999999999999998888

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.62  E-value=3.6e-08  Score=65.59  Aligned_cols=52  Identities=15%  Similarity=0.132  Sum_probs=44.0

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      ..+.++.++|.|+|++||+++.+..+||++++|++|++...|+++++.....
T Consensus       179 ~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~  230 (266)
T 2yz2_A          179 RIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD  230 (266)
T ss_dssp             HHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHHSC
T ss_pred             HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCcc
Confidence            3455554458999999999999999999999999999999999999876543

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.57  E-value=1e-07  Score=63.44  Aligned_cols=49  Identities=14%  Similarity=0.085  Sum_probs=41.2

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhh-cCeEEEEeCCEEeEecChHHHHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEAL-CTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      ..+.++.++|.|+|++||+++.+..+ ||++++|++|++...|+++++..
T Consensus       205 ~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  254 (267)
T 2zu0_C          205 DGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQ  254 (267)
T ss_dssp             HHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHHH
T ss_pred             HHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHhh
Confidence            34555555689999999999998886 99999999999999999887654

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.53  E-value=8.6e-08  Score=62.69  Aligned_cols=46  Identities=9%  Similarity=0.102  Sum_probs=36.6

Q ss_pred             hhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239          7 QHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus         7 ~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      ..+.++.++ |.|+|++||+++. ..+||++++|++|++...+++.++
T Consensus       186 ~~l~~l~~~~g~tvi~vtHd~~~-~~~~d~i~~l~~G~i~~~~~~~~~  232 (235)
T 3tif_A          186 QLLKKLNEEDGKTVVVVTHDINV-ARFGERIIYLKDGEVEREEKLRGF  232 (235)
T ss_dssp             HHHHHHHHHHCCEEEEECSCHHH-HTTSSEEEEEETTEEEEEEECC--
T ss_pred             HHHHHHHHHcCCEEEEEcCCHHH-HHhCCEEEEEECCEEEEEcChhhh
Confidence            345555544 8999999999995 578999999999999998877664

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.51  E-value=2.1e-07  Score=61.52  Aligned_cols=46  Identities=7%  Similarity=0.058  Sum_probs=39.1

Q ss_pred             hhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239          7 QHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus         7 ~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      ..+.++.++ |.|+|++||+++++..+||++++|++|+ ...|+++++
T Consensus       169 ~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~  215 (253)
T 2nq2_C          169 SLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNI  215 (253)
T ss_dssp             HHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred             HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence            345555544 8999999999999999999999999999 888888775

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.47  E-value=2.4e-07  Score=60.12  Aligned_cols=42  Identities=17%  Similarity=0.015  Sum_probs=35.2

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecC
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGS   49 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~   49 (97)
                      ..+.++.++|.|+|++||+++.+ .+||++++|++|++...|+
T Consensus       181 ~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          181 DIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             HHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence            34555554589999999999987 8999999999999988775

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.47  E-value=4.8e-07  Score=60.33  Aligned_cols=49  Identities=12%  Similarity=0.141  Sum_probs=40.6

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      ..+.++.+ .|.|+|++||+++.+.. ||++++|++|+++..|+++++...
T Consensus       197 ~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  246 (271)
T 2ixe_A          197 RLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQLMER  246 (271)
T ss_dssp             HHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred             HHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence            34555543 48999999999998875 999999999999999999988654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.45  E-value=4.7e-07  Score=59.36  Aligned_cols=47  Identities=9%  Similarity=0.012  Sum_probs=39.4

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      ..+.++. +|.|+|++||+++.+. .||++++|++|++...|+++++..
T Consensus       180 ~~l~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~  226 (243)
T 1mv5_A          180 KALDSLM-KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVA  226 (243)
T ss_dssp             HHHHHHH-TTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHH
T ss_pred             HHHHHhc-CCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence            3445554 4899999999999886 599999999999999999988754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.43  E-value=2.3e-07  Score=61.13  Aligned_cols=46  Identities=11%  Similarity=0.075  Sum_probs=38.9

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhh-cCeEEEEeCCEEeEecChHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEAL-CTRLAVMVNGRLSCLGSVQH   52 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~-~d~i~~l~~G~i~~~g~~~~   52 (97)
                      ..+.++.++|.|+|++||+++.+..+ ||++++|++|++...|+++.
T Consensus       184 ~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~  230 (250)
T 2d2e_A          184 RGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL  230 (250)
T ss_dssp             HHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred             HHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence            34555555689999999999999888 59999999999999998873

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.43  E-value=7.5e-07  Score=60.48  Aligned_cols=46  Identities=13%  Similarity=0.081  Sum_probs=39.6

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +..+. .++|+|++||+++.+.. ||++++|++|+++..|+++++...
T Consensus       233 l~~l~-~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~~~  278 (306)
T 3nh6_A          233 LAKVC-ANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALLSR  278 (306)
T ss_dssp             HHHHH-TTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred             HHHHc-CCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHhc
Confidence            34443 36899999999999987 999999999999999999998764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.43  E-value=2.5e-07  Score=60.91  Aligned_cols=47  Identities=17%  Similarity=0.206  Sum_probs=39.3

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .+.++. +|.|+|++||+++.+.. ||++++|++|+++..|+++++...
T Consensus       187 ~l~~~~-~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~  233 (247)
T 2ff7_A          187 NMHKIC-KGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE  233 (247)
T ss_dssp             HHHHHH-TTSEEEEECSSGGGGTT-SSEEEEEETTEEEEEECHHHHHTS
T ss_pred             HHHHHc-CCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence            344453 48999999999998864 999999999999999999988643

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.42  E-value=8e-08  Score=64.41  Aligned_cols=48  Identities=15%  Similarity=0.178  Sum_probs=40.5

Q ss_pred             hhhhhhccCCcEE--EEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239          7 QHSRKNSQTWISF--GLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK   54 (97)
Q Consensus         7 ~~~~~~~~~~~ti--ii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~   54 (97)
                      ..+.++.++|.|+  |++||+++++..+||++++|++|++...|+++++.
T Consensus       202 ~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  251 (279)
T 2ihy_A          202 SILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL  251 (279)
T ss_dssp             HHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred             HHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            3455554448899  99999999999999999999999999999887763

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.34  E-value=7.1e-07  Score=59.14  Aligned_cols=47  Identities=9%  Similarity=0.092  Sum_probs=39.2

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .+.++.+ +.|+|++||+++.+. .||++++|++|++...|+++++...
T Consensus       197 ~l~~l~~-~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~  243 (260)
T 2ghi_A          197 AVEDLRK-NRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHKDLLKL  243 (260)
T ss_dssp             HHHHHTT-TSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             HHHHhcC-CCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhc
Confidence            3445543 789999999999876 5999999999999999999988653

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.33  E-value=8.9e-07  Score=65.34  Aligned_cols=49  Identities=6%  Similarity=0.071  Sum_probs=41.3

Q ss_pred             hhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHH
Q psy18239          6 CQHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKN   55 (97)
Q Consensus         6 ~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~   55 (97)
                      +..+.++.++|.|+|++|||++.+ ..||++++|      ++|+++..|+++++..
T Consensus       586 ~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~  640 (670)
T 3ux8_A          586 LDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAE  640 (670)
T ss_dssp             HHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred             HHHHHHHHHCCCEEEEEeCCHHHH-HhCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence            344556666689999999999987 569999999      8999999999999854

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.26  E-value=1e-06  Score=58.60  Aligned_cols=38  Identities=21%  Similarity=0.074  Sum_probs=36.0

Q ss_pred             EEEEEeCCHHHHHhhcC-eEEEEeCCEEeEecChHHHHH
Q psy18239         18 SFGLFYSSLEECEALCT-RLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus        18 tiii~tH~~~~~~~~~d-~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      |+|++||+++++..+|| ++++|++|++...|+++++..
T Consensus       177 tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~  215 (263)
T 2pjz_A          177 EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE  215 (263)
T ss_dssp             EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred             cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence            99999999999999999 999999999999999999864

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.25  E-value=8.9e-07  Score=61.96  Aligned_cols=42  Identities=14%  Similarity=0.135  Sum_probs=37.0

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      .+.|+|++||+++.+ ..||++++|++|++...|++.+++..+
T Consensus       203 ~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el~~~p  244 (390)
T 3gd7_A          203 ADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILELYHYP  244 (390)
T ss_dssp             TTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred             CCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCC
Confidence            478999999998755 569999999999999999999987754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.23  E-value=3e-06  Score=55.09  Aligned_cols=40  Identities=18%  Similarity=0.226  Sum_probs=35.8

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.|+|++||+++.+. .||++++|++|++...|+++++..
T Consensus       179 ~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~  218 (229)
T 2pze_A          179 ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN  218 (229)
T ss_dssp             TTSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECHHHHHT
T ss_pred             CCCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence            3789999999999886 499999999999999999988754

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.21  E-value=1.8e-06  Score=65.98  Aligned_cols=50  Identities=6%  Similarity=0.064  Sum_probs=42.2

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHHhh
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~   57 (97)
                      ..+..+.+.|.|+|++|||++.+.. ||++++|      .+|++++.|+++++....
T Consensus       849 ~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~  904 (916)
T 3pih_A          849 EVLHRLVDRGNTVIVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGTPEEIAKNP  904 (916)
T ss_dssp             HHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEESHHHHHSCT
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcCHHHHHhCC
Confidence            3455566668999999999998865 9999999      899999999999987643

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.20  E-value=3.9e-06  Score=61.21  Aligned_cols=41  Identities=12%  Similarity=0.235  Sum_probs=37.5

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +++|+|++||+++.+. .||++++|++|+++..|+++++.+.
T Consensus       527 ~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~~~  567 (587)
T 3qf4_A          527 KGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELLEH  567 (587)
T ss_dssp             TTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHHHH
T ss_pred             CCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence            4799999999999875 7999999999999999999998754

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.18  E-value=3.5e-06  Score=61.33  Aligned_cols=46  Identities=13%  Similarity=0.076  Sum_probs=39.2

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +.++.+ |+|+|++||+++.+. .||++++|++|++...|+++++...
T Consensus       523 l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~  568 (582)
T 3b5x_A          523 LDELQK-NKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLLAQ  568 (582)
T ss_pred             HHHHcC-CCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence            444443 899999999999886 6999999999999999999998653

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.16  E-value=3e-06  Score=62.51  Aligned_cols=49  Identities=8%  Similarity=0.019  Sum_probs=40.9

Q ss_pred             hhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHH
Q psy18239          6 CQHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKN   55 (97)
Q Consensus         6 ~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~   55 (97)
                      +..++++.++|.|+|++|||++.+. .||++++|      ++|+++..|+++++..
T Consensus       244 ~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~  298 (670)
T 3ux8_A          244 IATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMN  298 (670)
T ss_dssp             HHHHHHHHHTTCEEEEECCCHHHHH-HCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred             HHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEEEecccccccCCEEEEecCHHHHhc
Confidence            3445556666899999999999876 59999999      8999999999998764

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.14  E-value=3.6e-06  Score=55.02  Aligned_cols=41  Identities=24%  Similarity=0.208  Sum_probs=36.5

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      ++.|+|++||+++.+. .||++++|++|++...|+++++...
T Consensus       178 ~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~  218 (237)
T 2cbz_A          178 KNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQELLAR  218 (237)
T ss_dssp             TTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHHHHH
T ss_pred             CCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHHhhc
Confidence            4789999999999875 6999999999999999999987653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.14  E-value=1.3e-06  Score=64.08  Aligned_cols=50  Identities=8%  Similarity=-0.012  Sum_probs=41.8

Q ss_pred             hhhhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEeC--CEEeEecChHHHHHh
Q psy18239          7 QHSRKNS-QTWISFGLFYSSLEECEALCTRLAVMVN--GRLSCLGSVQHLKNK   56 (97)
Q Consensus         7 ~~~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~--G~i~~~g~~~~l~~~   56 (97)
                      ..+.++. +.|.|+|++|||++++..+|||+++|++  |++...|+|+++.+.
T Consensus       508 ~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~  560 (608)
T 3j16_B          508 KVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG  560 (608)
T ss_dssp             HHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred             HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence            3445543 4589999999999999999999999986  889999999887654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.13  E-value=6.9e-06  Score=55.30  Aligned_cols=40  Identities=18%  Similarity=0.226  Sum_probs=35.9

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+.|+|++||+++.+. .||++++|++|++...|+++++..
T Consensus       208 ~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~  247 (290)
T 2bbs_A          208 ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN  247 (290)
T ss_dssp             TTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHHHHH
T ss_pred             CCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHHHhh
Confidence            4789999999999886 599999999999999999988754

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.12  E-value=4e-06  Score=61.26  Aligned_cols=41  Identities=15%  Similarity=0.172  Sum_probs=37.6

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +|+|+|++||+++.+.. ||++++|++|+++..|+++++.+.
T Consensus       539 ~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  579 (598)
T 3qf4_B          539 EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQK  579 (598)
T ss_dssp             TTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHHHT
T ss_pred             CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence            47999999999999876 999999999999999999998764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.11  E-value=4.5e-06  Score=60.71  Aligned_cols=41  Identities=17%  Similarity=0.174  Sum_probs=37.1

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +++|+|++||+++.+.. ||++++|++|++...|+++++...
T Consensus       525 ~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~el~~~  565 (578)
T 4a82_A          525 KDRTTLIVAHRLSTITH-ADKIVVIENGHIVETGTHRELIAK  565 (578)
T ss_dssp             TTSEEEEECSSGGGTTT-CSEEEEEETTEEEEEECHHHHHHT
T ss_pred             CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence            46899999999999865 999999999999999999998764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.09  E-value=4.8e-06  Score=60.58  Aligned_cols=46  Identities=13%  Similarity=0.080  Sum_probs=39.3

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +.++.+ |+|+|++||+++.+. .||++++|++|++...|+++++...
T Consensus       523 l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~  568 (582)
T 3b60_A          523 LDELQK-NRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ  568 (582)
T ss_dssp             HHHHHT-TSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             HHHHhC-CCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHHHc
Confidence            444443 899999999999875 6999999999999999999998764

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.06  E-value=4.4e-06  Score=63.35  Aligned_cols=49  Identities=12%  Similarity=0.051  Sum_probs=41.6

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHHh
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~   56 (97)
                      ..+..+.+.|.|||++|||++++ ..||++++|      .+|+++..|+++++...
T Consensus       774 ~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~  828 (842)
T 2vf7_A          774 RQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQA  828 (842)
T ss_dssp             HHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHTTC
T ss_pred             HHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHHhC
Confidence            34555666799999999999999 789999999      68999999999998653

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.05  E-value=1e-05  Score=61.83  Aligned_cols=49  Identities=14%  Similarity=0.111  Sum_probs=41.9

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHHh
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~   56 (97)
                      ..++.+.+.|.|+|++|||++.+.. ||+++.|      .+|++++.|+++++...
T Consensus       507 ~~L~~L~~~G~TvivVtHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~~  561 (916)
T 3pih_A          507 KTLKKLRDLGNTVIVVEHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLKN  561 (916)
T ss_dssp             HHHHHTTTTTCEEEEECCCHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHHS
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhhcC
Confidence            3456666679999999999998865 9999999      89999999999998653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.97  E-value=6e-06  Score=59.79  Aligned_cols=49  Identities=10%  Similarity=0.030  Sum_probs=39.8

Q ss_pred             hhhhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEeC--CEEeEecChHHHHH
Q psy18239          7 QHSRKNS-QTWISFGLFYSSLEECEALCTRLAVMVN--GRLSCLGSVQHLKN   55 (97)
Q Consensus         7 ~~~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~--G~i~~~g~~~~l~~   55 (97)
                      ..+.++. +.|.|+|++|||++++..+||++++|.+  |++...|+++++..
T Consensus       442 ~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~  493 (538)
T 1yqt_A          442 RAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE  493 (538)
T ss_dssp             HHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence            3344544 3589999999999999999999999986  67778898887765

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.95  E-value=1.2e-05  Score=61.69  Aligned_cols=50  Identities=6%  Similarity=0.058  Sum_probs=41.6

Q ss_pred             hhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHHh
Q psy18239          6 CQHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         6 ~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~   56 (97)
                      +..+..+.+.|.|||++|||++++ ..||++++|      .+|+++..|+++++...
T Consensus       888 ~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~  943 (972)
T 2r6f_A          888 LDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV  943 (972)
T ss_dssp             HHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHHTC
T ss_pred             HHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHHhC
Confidence            344555666789999999999987 579999999      68999999999998653

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.95  E-value=5.5e-06  Score=65.28  Aligned_cols=43  Identities=16%  Similarity=0.120  Sum_probs=38.6

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      .++|+|+++|.++.+.. ||+|++|++|++++.|+++++.++.+
T Consensus      1265 ~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE~Gth~eLl~~~g 1307 (1321)
T 4f4c_A         1265 EGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEKGTHTQLMSEKG 1307 (1321)
T ss_dssp             SSSEEEEECSSSSTTTT-CSEEEEESSSSEEEEECHHHHHHCC-
T ss_pred             CCCEEEEeccCHHHHHh-CCEEEEEECCEEEEECCHHHHHhCCc
Confidence            47999999999998876 99999999999999999999987643

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.89  E-value=1.1e-05  Score=63.42  Aligned_cols=42  Identities=17%  Similarity=0.197  Sum_probs=37.9

Q ss_pred             cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         14 QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        14 ~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      ..|+|+|++||+++.+.. |||+++|++|++.+.|+++++...
T Consensus      1218 ~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A         1218 REGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQ 1259 (1284)
T ss_dssp             SSSSCEEEECSCTTGGGS-CSEEEEEETBEEEEEECHHHHHHS
T ss_pred             CCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence            358999999999999855 999999999999999999998764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.89  E-value=1.2e-05  Score=59.02  Aligned_cols=49  Identities=12%  Similarity=0.030  Sum_probs=40.0

Q ss_pred             hhhhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEeC--CEEeEecChHHHHH
Q psy18239          7 QHSRKNS-QTWISFGLFYSSLEECEALCTRLAVMVN--GRLSCLGSVQHLKN   55 (97)
Q Consensus         7 ~~~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~--G~i~~~g~~~~l~~   55 (97)
                      ..+..+. +.|.|+|++|||++++..+||++++|++  |++...|+++++.+
T Consensus       512 ~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~  563 (607)
T 3bk7_A          512 RAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE  563 (607)
T ss_dssp             HHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence            3344543 3589999999999999999999999986  77778899888765

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=97.87  E-value=2.5e-05  Score=53.97  Aligned_cols=39  Identities=8%  Similarity=-0.071  Sum_probs=31.9

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeE
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSC   46 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~   46 (97)
                      ..+..+.+.|.|+|++||+++. ...||++++|.+|+++.
T Consensus       326 ~~l~~l~~~g~tvi~itH~~~~-~~~~d~~~~l~~G~i~~  364 (365)
T 3qf7_A          326 SVLKELERLNKVIVFITHDREF-SEAFDRKLRITGGVVVN  364 (365)
T ss_dssp             HHHHGGGGSSSEEEEEESCHHH-HTTCSCEEEEETTEEC-
T ss_pred             HHHHHHHhCCCEEEEEecchHH-HHhCCEEEEEECCEEEe
Confidence            3455566678999999999998 66799999999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.79  E-value=6e-05  Score=58.08  Aligned_cols=41  Identities=10%  Similarity=0.026  Sum_probs=37.1

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEe-EecChHHHHH
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLS-CLGSVQHLKN   55 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~l~~   55 (97)
                      .|.|+|++||+++++..+||++++|++|++. +.|+++++..
T Consensus       594 ~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~  635 (986)
T 2iw3_A          594 CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK  635 (986)
T ss_dssp             SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred             CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence            5899999999999999999999999999986 6799888754

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.72  E-value=3.3e-05  Score=59.39  Aligned_cols=48  Identities=8%  Similarity=0.027  Sum_probs=40.4

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHH
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKN   55 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~   55 (97)
                      ..++.+++.|.|||+++|+++++. .||++++|      ++|++++.|+++++..
T Consensus       547 ~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~  600 (972)
T 2r6f_A          547 ATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMN  600 (972)
T ss_dssp             HHHHHHHTTTCEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred             HHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence            345666677999999999999876 59999999      7899999999888643

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.70  E-value=3e-05  Score=61.01  Aligned_cols=41  Identities=12%  Similarity=0.042  Sum_probs=37.3

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      +|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus       574 ~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~~~  614 (1284)
T 3g5u_A          574 EGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMRE  614 (1284)
T ss_dssp             TTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHHHHT
T ss_pred             CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence            58999999999999876 999999999999999999998653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.64  E-value=4.3e-05  Score=55.40  Aligned_cols=47  Identities=11%  Similarity=0.058  Sum_probs=35.5

Q ss_pred             hhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeC--CEEeEecChHHH
Q psy18239          7 QHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVN--GRLSCLGSVQHL   53 (97)
Q Consensus         7 ~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~--G~i~~~g~~~~l   53 (97)
                      ..+.++.+ .|.|+|++|||++++..+|||+++|++  |.....+++..+
T Consensus       426 ~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~  475 (538)
T 3ozx_A          426 KAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTL  475 (538)
T ss_dssp             HHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred             HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence            34555543 589999999999999999999999986  445555655443

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.64  E-value=4.7e-05  Score=60.12  Aligned_cols=40  Identities=13%  Similarity=0.056  Sum_probs=36.3

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      +++|+|++||.+..+. .||+|++|++|++++.|+.+++..
T Consensus       602 ~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive~Gth~eL~~  641 (1321)
T 4f4c_A          602 KGRTTIIIAHRLSTIR-NADLIISCKNGQVVEVGDHRALMA  641 (1321)
T ss_dssp             TTSEEEEECSCTTTTT-TCSEEEEEETTEEEEEECHHHHHT
T ss_pred             CCCEEEEEcccHHHHH-hCCEEEEeeCCeeeccCCHHHHHH
Confidence            4799999999999875 599999999999999999999864

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.54  E-value=8.2e-05  Score=56.55  Aligned_cols=47  Identities=15%  Similarity=0.058  Sum_probs=39.4

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE------eCCEEeEecChHHHHH
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVM------VNGRLSCLGSVQHLKN   55 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~   55 (97)
                      .+..+.+.|.|||+++|+++.+ ..||+++.|      ++|++++.|+++++..
T Consensus       423 ~l~~L~~~G~TVIvVeHdl~~l-~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~  475 (842)
T 2vf7_A          423 ALENLKRGGNSLFVVEHDLDVI-RRADWLVDVGPEAGEKGGEILYSGPPEGLKH  475 (842)
T ss_dssp             HHHHHHTTTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred             HHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence            3556666799999999999966 469999999      7899999999888644

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.45  E-value=0.0002  Score=52.62  Aligned_cols=37  Identities=11%  Similarity=-0.107  Sum_probs=31.6

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGR   43 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~   43 (97)
                      ..++.+.++|.|+|++||+++++..+||++++|.+|.
T Consensus       262 ~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~  298 (608)
T 3j16_B          262 QIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP  298 (608)
T ss_dssp             HHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred             HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence            3455666678999999999999999999999998765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.38  E-value=0.00014  Score=52.65  Aligned_cols=36  Identities=17%  Similarity=0.064  Sum_probs=29.8

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCC
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNG   42 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G   42 (97)
                      ..++.+.+.|.|+|++||+++++..+||++++|++|
T Consensus       199 ~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~  234 (538)
T 1yqt_A          199 RAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE  234 (538)
T ss_dssp             HHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence            345555556899999999999999999999999754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.36  E-value=9.6e-05  Score=56.98  Aligned_cols=38  Identities=16%  Similarity=0.069  Sum_probs=31.0

Q ss_pred             hccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecC
Q psy18239         12 NSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGS   49 (97)
Q Consensus        12 ~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~   49 (97)
                      +.+.+.++|++|||++++..+||++++|.+|++...|+
T Consensus       944 L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~  981 (986)
T 2iw3_A          944 LKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH  981 (986)
T ss_dssp             HHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred             HHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence            34446799999999999999999999999999887664

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.36  E-value=0.00023  Score=52.29  Aligned_cols=36  Identities=11%  Similarity=0.027  Sum_probs=30.0

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCC
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNG   42 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G   42 (97)
                      ..++.+.++|.|+|++|||++.+..+||++++|.++
T Consensus       269 ~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~  304 (607)
T 3bk7_A          269 RVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE  304 (607)
T ss_dssp             HHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred             HHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence            345555556899999999999999999999999864

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=97.21  E-value=0.00067  Score=41.32  Aligned_cols=34  Identities=12%  Similarity=0.038  Sum_probs=26.4

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEE--eCCE
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVM--VNGR   43 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l--~~G~   43 (97)
                      +..+.+.|.++|++||++ ++..+||++++|  .+|.
T Consensus       106 l~~~~~~~~tiiivsH~~-~~~~~~d~ii~l~~~~g~  141 (148)
T 1f2t_B          106 MERYLKKIPQVILVSHDE-ELKDAADHVIRISLENGS  141 (148)
T ss_dssp             HHHTGGGSSEEEEEESCG-GGGGGCSEEEEEEEETTE
T ss_pred             HHHHHccCCEEEEEEChH-HHHHhCCEEEEEEcCCCe
Confidence            444445578999999999 567899999999  4554

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.16  E-value=0.00038  Score=50.45  Aligned_cols=35  Identities=9%  Similarity=-0.067  Sum_probs=29.2

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGR   43 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~   43 (97)
                      .++++.+ |.|+|++||+++++..+||++.+|.+|.
T Consensus       180 ~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~~~  214 (538)
T 3ozx_A          180 AIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYGES  214 (538)
T ss_dssp             HHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred             HHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence            3455554 8999999999999999999999998653

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.14  E-value=8e-05  Score=47.17  Aligned_cols=32  Identities=19%  Similarity=-0.060  Sum_probs=25.4

Q ss_pred             hhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEe
Q psy18239          9 SRKNS-QTWISFGLFYSSLEECEALCTRLAVMV   40 (97)
Q Consensus         9 ~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~   40 (97)
                      +.++. +.|.+++++|||++++..+||++++|.
T Consensus       170 l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~  202 (207)
T 1znw_A          170 RIELAAQGDFDKVVVNRRLESACAELVSLLVGT  202 (207)
T ss_dssp             HHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred             HHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence            34444 358999999999999999999999884

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.14  E-value=0.001  Score=45.94  Aligned_cols=38  Identities=8%  Similarity=-0.085  Sum_probs=30.2

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEE----eCCEEeEe
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVM----VNGRLSCL   47 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l----~~G~i~~~   47 (97)
                      .+..+. ++.++|++||++..+ .+||++++|    ++|++...
T Consensus       339 ~L~~l~-~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~G~~~~~  380 (415)
T 4aby_A          339 QLSRLA-DTRQVLVVTHLAQIA-ARAHHHYKVEKQVEDGRTVSH  380 (415)
T ss_dssp             HHHHHT-TTSEEEEECSCHHHH-TTCSEEEEEEEEEETTEEEEE
T ss_pred             HHHHHh-CCCEEEEEeCcHHHH-hhcCeEEEEEEeccCCceEEE
Confidence            344454 479999999999765 579999999    99987654

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.61  E-value=0.00098  Score=47.49  Aligned_cols=38  Identities=8%  Similarity=-0.116  Sum_probs=33.4

Q ss_pred             CCcEEEEEeCCHH------HHHhhcCe-----EEEEe-CCEEeEecChHHH
Q psy18239         15 TWISFGLFYSSLE------ECEALCTR-----LAVMV-NGRLSCLGSVQHL   53 (97)
Q Consensus        15 ~~~tiii~tH~~~------~~~~~~d~-----i~~l~-~G~i~~~g~~~~l   53 (97)
                      .+.+++++||+.+      ++..+||+     +++|+ +|+++ .|++.++
T Consensus       287 ~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~  336 (460)
T 2npi_A          287 LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK  336 (460)
T ss_dssp             TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred             hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence            4788999999987      88899999     99999 99998 8888765

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.44  E-value=0.00014  Score=46.85  Aligned_cols=37  Identities=3%  Similarity=-0.225  Sum_probs=27.6

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEE
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRL   44 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i   44 (97)
                      ..+.++.++|.|+|++||+++++..+||+++++. |++
T Consensus       174 ~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~-~~~  210 (214)
T 1sgw_A          174 KSILEILKEKGIVIISSREELSYCDVNENLHKYS-TKI  210 (214)
T ss_dssp             HHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGB-C--
T ss_pred             HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeC-Ccc
Confidence            3445554457899999999999999999988664 454

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.40  E-value=0.00097  Score=47.91  Aligned_cols=34  Identities=15%  Similarity=0.109  Sum_probs=27.7

Q ss_pred             hhhhhccCCcEEEEEeCCHHHH---------HhhcCeEEEEeC
Q psy18239          8 HSRKNSQTWISFGLFYSSLEEC---------EALCTRLAVMVN   41 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~---------~~~~d~i~~l~~   41 (97)
                      .+..+++.|.|+|++||+++++         ..+||++++|++
T Consensus       167 ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~  209 (525)
T 1tf7_A          167 LVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN  209 (525)
T ss_dssp             HHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred             HHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence            3455555689999999999984         566999999988

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.37  E-value=0.0038  Score=44.74  Aligned_cols=34  Identities=0%  Similarity=-0.223  Sum_probs=26.7

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCE
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGR   43 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~   43 (97)
                      .+..+.+ +.+||++||+++.+. +||++++|.++.
T Consensus       441 ~l~~~~~-~~~vi~itH~~~~~~-~~d~~~~~~~~~  474 (517)
T 4ad8_A          441 QLSRLAD-TRQVLVVTHLAQIAA-RAHHHYKVEKQV  474 (517)
T ss_dssp             HHHHHHH-HSEEEEECCCHHHHH-HSSEEEEEECCE
T ss_pred             HHHHHhC-CCEEEEEecCHHHHH-hCCEEEEEeccc
Confidence            3455555 789999999999776 599999996553

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.09  E-value=0.00041  Score=43.01  Aligned_cols=44  Identities=11%  Similarity=-0.069  Sum_probs=31.4

Q ss_pred             hhhhccCCcEEEEEeCC-HHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239          9 SRKNSQTWISFGLFYSS-LEECEALCTRLAVMVNGRLSCLGSVQHLK   54 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~-~~~~~~~~d~i~~l~~G~i~~~g~~~~l~   54 (97)
                      +....+.+.++|.+||. ++++..+|++++  ++|++...|+++.+.
T Consensus       139 ~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~  183 (189)
T 2bdt_A          139 FESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE  183 (189)
T ss_dssp             HHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred             HhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence            44444557889999999 999999999998  999999999887653

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.71  E-value=0.0025  Score=45.82  Aligned_cols=35  Identities=9%  Similarity=-0.057  Sum_probs=29.7

Q ss_pred             hhhhccCCcEEEEEeCCH----------HHHHhhcCeEEEEeCCE
Q psy18239          9 SRKNSQTWISFGLFYSSL----------EECEALCTRLAVMVNGR   43 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~----------~~~~~~~d~i~~l~~G~   43 (97)
                      +..+++.|.|+|+++|+.          ..+..+||++++|.+|+
T Consensus       400 l~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          400 TGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             HHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             HHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence            445556789999999999          77888999999998886

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.68  E-value=0.0061  Score=40.32  Aligned_cols=37  Identities=5%  Similarity=0.054  Sum_probs=27.6

Q ss_pred             hhhhhcc-CCcEEEEEeCCH--H--------------------HHHhhcCeEEEEeCCEE
Q psy18239          8 HSRKNSQ-TWISFGLFYSSL--E--------------------ECEALCTRLAVMVNGRL   44 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~--~--------------------~~~~~~d~i~~l~~G~i   44 (97)
                      .++.+.+ .+++||+++|+.  +                    .+..+||++++|.+|+.
T Consensus       178 ~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          178 KLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             HHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             HHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence            3455544 489999999995  4                    67889999999998874

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.55  E-value=0.00039  Score=47.82  Aligned_cols=35  Identities=6%  Similarity=0.153  Sum_probs=31.7

Q ss_pred             EEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHH
Q psy18239         18 SFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLK   54 (97)
Q Consensus        18 tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~   54 (97)
                      |++++|||++  ..+||++.+|.+|+++..++.+++.
T Consensus       220 tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l~~~~  254 (347)
T 2obl_A          220 TVLLESDNVN--DPIGDEVRSILDGHIVLTRELAEEN  254 (347)
T ss_dssp             EEECCSSCCC--CHHHHHHHHHCSEEEEBCHHHHTTT
T ss_pred             EEEEeCCCCC--ChhhhheEEeeCcEEEEeCCHHHcC
Confidence            8999999999  6789999999999999998887763

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.46  E-value=0.0078  Score=37.76  Aligned_cols=36  Identities=3%  Similarity=-0.220  Sum_probs=25.4

Q ss_pred             hhhhhc-cCCcEEEEEeCCH--------HHHHhhcCeEEEEeCCE
Q psy18239          8 HSRKNS-QTWISFGLFYSSL--------EECEALCTRLAVMVNGR   43 (97)
Q Consensus         8 ~~~~~~-~~~~tiii~tH~~--------~~~~~~~d~i~~l~~G~   43 (97)
                      .+..+. +.+.++|+++|+.        ..+..+||++++|.+..
T Consensus       149 ~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~  193 (235)
T 2w0m_A          149 YLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI  193 (235)
T ss_dssp             HHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred             HHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence            344443 4589999999999        45888999999997643

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=95.44  E-value=0.014  Score=39.64  Aligned_cols=32  Identities=6%  Similarity=-0.079  Sum_probs=24.5

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEe
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMV   40 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~   40 (97)
                      .+..+.+.+.++|++||+.+ +..+||+++.|.
T Consensus       296 ~l~~~~~~~~~vi~~sH~~~-~~~~~d~~~~l~  327 (339)
T 3qkt_A          296 IMERYLKKIPQVILVSHDEE-LKDAADHVIRIS  327 (339)
T ss_dssp             HHHHTGGGSSEEEEEESCGG-GGGGCSEEEEEE
T ss_pred             HHHHHHhcCCEEEEEEChHH-HHHhCCEEEEEE
Confidence            34444555789999999965 677899999885

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=94.99  E-value=0.012  Score=36.97  Aligned_cols=36  Identities=8%  Similarity=-0.103  Sum_probs=23.5

Q ss_pred             hhhhhc-cCCcEEEEEeCCH----HHHHhhcCeEEEEeCCE
Q psy18239          8 HSRKNS-QTWISFGLFYSSL----EECEALCTRLAVMVNGR   43 (97)
Q Consensus         8 ~~~~~~-~~~~tiii~tH~~----~~~~~~~d~i~~l~~G~   43 (97)
                      .+..+. +.|.|+|++||..    ..+..+||++++|.+|+
T Consensus       161 ~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~  201 (231)
T 4a74_A          161 DLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK  201 (231)
T ss_dssp             HHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred             HHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence            344443 3589999999954    44889999999998753

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=94.77  E-value=0.02  Score=39.54  Aligned_cols=33  Identities=6%  Similarity=-0.149  Sum_probs=28.4

Q ss_pred             cEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHH
Q psy18239         17 ISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHL   53 (97)
Q Consensus        17 ~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l   53 (97)
                      .++|++||. +.   .||++++|++|++...|+++++
T Consensus       322 qt~i~~th~-~~---~~~~i~~l~~G~i~~~g~~~~~  354 (359)
T 2o5v_A          322 QAIVTGTEL-AP---GAALTLRAQAGRFTPVADEEMQ  354 (359)
T ss_dssp             EEEEEESSC-CT---TCSEEEEEETTEEEECCCTTTS
T ss_pred             cEEEEEEec-cc---cCCEEEEEECCEEEecCCHHHH
Confidence            689999994 43   7999999999999999988765

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=94.73  E-value=0.0095  Score=36.47  Aligned_cols=23  Identities=17%  Similarity=0.141  Sum_probs=18.6

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHh
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEA   31 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~   31 (97)
                      +..+.++|.|+|++||+++++..
T Consensus       142 l~~l~~~g~tvi~vtH~~~~~~~  164 (171)
T 4gp7_A          142 IKGLQREGFRYVYILNSPEEVEE  164 (171)
T ss_dssp             STTHHHHTCSEEEEECSHHHHHH
T ss_pred             hhhHHhcCCcEEEEeCCHHHhhh
Confidence            44455568999999999999876

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=94.37  E-value=0.058  Score=42.00  Aligned_cols=44  Identities=11%  Similarity=0.040  Sum_probs=30.2

Q ss_pred             hhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEe--EecChHH
Q psy18239          8 HSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLS--CLGSVQH   52 (97)
Q Consensus         8 ~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~--~~g~~~~   52 (97)
                      .+..+.+. |.++|++||+++.+..++|++.+++ |++.  ..|++.+
T Consensus       893 il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~-g~~~~~~~~~~~~  939 (1022)
T 2o8b_B          893 VVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRL-GHMACMVENECED  939 (1022)
T ss_dssp             HHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEE-EEEEEC-------
T ss_pred             HHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeec-CeEEEEEecCccc
Confidence            34555554 8999999999999999999998875 7776  4455444

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=94.16  E-value=0.0015  Score=46.24  Aligned_cols=36  Identities=3%  Similarity=0.050  Sum_probs=32.2

Q ss_pred             EEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239         18 SFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus        18 tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      |++++|||++  ..+||++++|.+|+++..++++++..
T Consensus       309 tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~~~~~~  344 (438)
T 2dpy_A          309 TVLTEGDDQQ--DPIADSARAILDGHIVLSRRLAEAGH  344 (438)
T ss_dssp             EEECSSSCSC--CHHHHHHHHHSSEEEEECHHHHHTTC
T ss_pred             EEEEeCCCcc--chhhceEEEEeCcEEEEeCCHHHccC
Confidence            8999999999  67899999999999999998887643

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.76  E-value=0.063  Score=36.08  Aligned_cols=29  Identities=21%  Similarity=0.133  Sum_probs=23.0

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeE--EEEeCCEE
Q psy18239         15 TWISFGLFYSSLEECEALCTRL--AVMVNGRL   44 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i--~~l~~G~i   44 (97)
                      .+.++|++||+.. +..+||++  ++|.+|..
T Consensus       271 ~~~~vi~~tH~~~-~~~~~d~~~~v~~~~g~s  301 (322)
T 1e69_A          271 KHTQFIVITHNKI-VMEAADLLHGVTMVNGVS  301 (322)
T ss_dssp             TTSEEEEECCCTT-GGGGCSEEEEEEESSSCE
T ss_pred             CCCeEEEEECCHH-HHhhCceEEEEEEeCCEE
Confidence            4789999999965 56789987  77777764

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=93.68  E-value=0.0092  Score=45.99  Aligned_cols=43  Identities=14%  Similarity=-0.005  Sum_probs=33.0

Q ss_pred             hhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHH
Q psy18239          9 SRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQH   52 (97)
Q Consensus         9 ~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~   52 (97)
                      +..+.+ .|.++|++||+.+. ..+||++..+.+|++...++.++
T Consensus       767 l~~l~~~~g~~vl~aTH~~el-~~lad~~~~v~ng~v~~~~~~~~  810 (934)
T 3thx_A          767 SEYIATKIGAFCMFATHFHEL-TALANQIPTVNNLHVTALTTEET  810 (934)
T ss_dssp             HHHHHHTTCCEEEEEESCGGG-GGGGGTCTTEEEEEEEEEEETTE
T ss_pred             HHHHHhcCCCEEEEEcCcHHH-HHHhcccceeEeeEEEEEecCCc
Confidence            344444 48999999999664 57899999999999887765544

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=91.31  E-value=0.2  Score=34.24  Aligned_cols=25  Identities=8%  Similarity=-0.019  Sum_probs=21.2

Q ss_pred             CcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239         16 WISFGLFYSSLEECEALCTRLAVMVN   41 (97)
Q Consensus        16 ~~tiii~tH~~~~~~~~~d~i~~l~~   41 (97)
                      +.+++++||++. +..+||++++|.+
T Consensus       336 ~~~vi~~th~~~-~~~~~d~~~~l~k  360 (371)
T 3auy_A          336 IPQMIIITHHRE-LEDVADVIINVKK  360 (371)
T ss_dssp             CSEEEEEESCGG-GGGGCSEEEEEEE
T ss_pred             CCeEEEEEChHH-HHhhCCEEEEEEe
Confidence            468999999987 6788999999973

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=91.17  E-value=0.35  Score=33.65  Aligned_cols=31  Identities=10%  Similarity=-0.037  Sum_probs=23.1

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEe
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMV   40 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~   40 (97)
                      +....+.+.++|++||+... ...||+++.+.
T Consensus       380 l~~~~~~~~~~ii~th~~~~-~~~~d~~~~~~  410 (430)
T 1w1w_A          380 IRRHRNPDLQFIVISLKNTM-FEKSDALVGVY  410 (430)
T ss_dssp             HHHHCBTTBEEEEECSCHHH-HTTCSEEEEEE
T ss_pred             HHHHhcCCCEEEEEECCHHH-HHhCCEEEEEE
Confidence            34444447899999999765 56799998885

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=90.33  E-value=0.17  Score=31.81  Aligned_cols=28  Identities=7%  Similarity=0.059  Sum_probs=17.6

Q ss_pred             CCcEEEEEeCCHHHHHh-------------------hcCeEEEEeCC
Q psy18239         15 TWISFGLFYSSLEECEA-------------------LCTRLAVMVNG   42 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~-------------------~~d~i~~l~~G   42 (97)
                      .+.++|+++|.......                   +||.+++|.++
T Consensus       163 ~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~  209 (243)
T 1n0w_A          163 FGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG  209 (243)
T ss_dssp             HCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred             cCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence            48999999997765443                   79999999865

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=89.50  E-value=0.22  Score=30.83  Aligned_cols=34  Identities=6%  Similarity=-0.161  Sum_probs=26.1

Q ss_pred             hhhhcc-CCcEEEEEeCCHH-------------HHHhhcCeEEEEeCC
Q psy18239          9 SRKNSQ-TWISFGLFYSSLE-------------ECEALCTRLAVMVNG   42 (97)
Q Consensus         9 ~~~~~~-~~~tiii~tH~~~-------------~~~~~~d~i~~l~~G   42 (97)
                      +..+.+ .+.++|+++|...             .+..+||.+++|.+.
T Consensus       138 L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          138 LLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             HHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             HHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence            444443 4899999999865             577899999999765

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=86.03  E-value=0.044  Score=37.20  Aligned_cols=58  Identities=12%  Similarity=-0.008  Sum_probs=36.1

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec-ChHHHHHhhcCceEEEEEe
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG-SVQHLKNKFAVGYQLQIKF   67 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g-~~~~l~~~~~~~~~~~~~~   67 (97)
                      +......+.++++++|+.+ +...|||++.|.+|.....+ +.+.+.........+.+.+
T Consensus       258 l~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~~~~~~~~~~i~~~i~~~id~vv~~  316 (330)
T 2pt7_A          258 YNVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSNSAARNIKFESLIEGFKDLIDMIVHI  316 (330)
T ss_dssp             HHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTSGGGTTSCHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHhcCCCEEEEEEcccH-HHHHhhhheehhcCCcccCCCCHHHHHHHHHHhCCEEEEE
Confidence            3444433457999999999 67789999999888643222 3444444444444444443

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=85.14  E-value=1.9  Score=26.46  Aligned_cols=33  Identities=12%  Similarity=-0.000  Sum_probs=22.8

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEE--eCCE
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVM--VNGR   43 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l--~~G~   43 (97)
                      +.+..+ +.++|++||+... ..+||+++.+  .+|.
T Consensus       111 l~~~~~-~~~~ivith~~~~-~~~ad~i~~v~~~~g~  145 (173)
T 3kta_B          111 IKESSK-ESQFIVITLRDVM-MANADKIIGVSMRDGV  145 (173)
T ss_dssp             HHHHTT-TSEEEEECSCHHH-HTTCSEEEEEEEETTE
T ss_pred             HHHhcc-CCEEEEEEecHHH-HHhCCEEEEEEecCCE
Confidence            334433 4689999999765 5689999855  4564

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=84.68  E-value=1.2  Score=27.35  Aligned_cols=22  Identities=0%  Similarity=-0.182  Sum_probs=17.7

Q ss_pred             cCCcEEEEEe---CCHHHHHhhcCe
Q psy18239         14 QTWISFGLFY---SSLEECEALCTR   35 (97)
Q Consensus        14 ~~~~tiii~t---H~~~~~~~~~d~   35 (97)
                      +.+.++|+++   |+.+.+..+|++
T Consensus       128 ~~~~~~i~~~H~~h~~~~~~~i~~r  152 (178)
T 1ye8_A          128 DPNVNVVATIPIRDVHPLVKEIRRL  152 (178)
T ss_dssp             CTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred             cCCCeEEEEEccCCCchHHHHHHhc
Confidence            3567788887   589999999998

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=84.36  E-value=0.19  Score=38.14  Aligned_cols=40  Identities=13%  Similarity=-0.014  Sum_probs=30.3

Q ss_pred             hhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEec
Q psy18239          8 HSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLG   48 (97)
Q Consensus         8 ~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g   48 (97)
                      .+..+.+ .|.++|++||+.+.+ .+||++..+.+|++....
T Consensus       711 ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~~~~~~~  751 (800)
T 1wb9_A          711 CAENLANKIKALTLFATHYFELT-QLPEKMEGVANVHLDALE  751 (800)
T ss_dssp             HHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEEEEEEEE
T ss_pred             HHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEEEEEEEE
Confidence            3445555 489999999999765 589998888888876654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=83.00  E-value=1.1  Score=28.56  Aligned_cols=32  Identities=22%  Similarity=0.082  Sum_probs=24.0

Q ss_pred             CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239         15 TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus        15 ~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      ++.+|++++|+++++..   |+  +.+|    .++++++..
T Consensus       129 ~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i~~  160 (219)
T 1s96_A          129 HARSIFILPPSKIELDR---RL--RGRG----QDSEEVIAK  160 (219)
T ss_dssp             TCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHHHH
T ss_pred             CCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHHHH
Confidence            57899999999998876   32  6666    567776654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=82.94  E-value=0.96  Score=28.32  Aligned_cols=29  Identities=7%  Similarity=-0.220  Sum_probs=22.0

Q ss_pred             ccCCcEEEEEeCCHHH--------HHhhcCeEEEEeC
Q psy18239         13 SQTWISFGLFYSSLEE--------CEALCTRLAVMVN   41 (97)
Q Consensus        13 ~~~~~tiii~tH~~~~--------~~~~~d~i~~l~~   41 (97)
                      ++.+.++++++|....        +.++||.++.|..
T Consensus       160 ~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          160 AGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             HHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             HHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            3558999999998776        4678899999864

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=82.92  E-value=0.64  Score=29.39  Aligned_cols=23  Identities=0%  Similarity=-0.132  Sum_probs=12.3

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHh
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEA   31 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~   31 (97)
                      ..+..+ ++|.++| +|||++++..
T Consensus       141 ~~l~~l-~~g~tii-vtHd~~~~~~  163 (208)
T 3b85_A          141 MFLTRL-GFGSKMV-VTGDITQVDL  163 (208)
T ss_dssp             HHHTTB-CTTCEEE-EEEC------
T ss_pred             HHHHHh-cCCCEEE-EECCHHHHhC
Confidence            334455 4588999 9999987664

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=82.39  E-value=0.13  Score=35.30  Aligned_cols=32  Identities=6%  Similarity=-0.145  Sum_probs=25.4

Q ss_pred             hhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCC
Q psy18239         10 RKNSQTWISFGLFYSSLEECEALCTRLAVMVNG   42 (97)
Q Consensus        10 ~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G   42 (97)
                      .+..+.|.++++++|+.+.+ ..+||++.|..|
T Consensus       215 ~~~~~~G~~vl~t~H~~~~~-~~~dRli~l~~~  246 (356)
T 3jvv_A          215 LTAAETGHLVFGTLHTTSAA-KTIDRVVDVFPA  246 (356)
T ss_dssp             HHHHHTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred             HHHHhcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence            34455689999999999987 679999888554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	97
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	1e-05
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	0.004

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.6 bits (92), Expect = 1e-05
 Identities = 14/58 (24%), Positives = 31/58 (53%)

Query: 1   MRIDRCQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA 58
              +  +  ++ SQ  ++  +   ++ E E LC R+A++ NG +   G+V+ LK ++ 
Sbjct: 168 NAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 32.6 bits (74), Expect = 0.004
 Identities = 8/59 (13%), Positives = 20/59 (33%)

Query: 1   MRIDRCQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAV 59
           +  +  +  +K +Q   +  L   +      +     V+  G++   G    L +   V
Sbjct: 174 LVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMV 232

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	97
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.26
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.25
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.25
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.21
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.21
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.2
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.19
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.15
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.15
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.07
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.07
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.04
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.88
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.85
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.84
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	98.82
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.82
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.68
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.67
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.48
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.97
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	83.79
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	83.45

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.26  E-value=3.9e-12  Score=83.15  Aligned_cols=53  Identities=4%  Similarity=0.053  Sum_probs=47.1

Q ss_pred             hhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          6 CQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         6 ~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      ...++++.++|.|+|++|||++++..+|||+++|.+|++++.|++++++.++.
T Consensus       189 ~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~~P~  241 (258)
T d1b0ua_         189 LRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQ  241 (258)
T ss_dssp             HHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCC
T ss_pred             HHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence            44566677779999999999999999999999999999999999999987654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.25  E-value=4.7e-12  Score=81.96  Aligned_cols=54  Identities=20%  Similarity=0.130  Sum_probs=47.1

Q ss_pred             hhhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          5 RCQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         5 ~~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      .+..+.++.+ .|+|+|++|||++++..+|||+++|++|++++.|++++++.++.
T Consensus       175 i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~  229 (239)
T d1v43a3         175 MRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN  229 (239)
T ss_dssp             HHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred             HHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence            3455667654 49999999999999999999999999999999999999987654

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.25  E-value=5.2e-12  Score=81.81  Aligned_cols=56  Identities=21%  Similarity=0.148  Sum_probs=48.0

Q ss_pred             hhhhhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcC
Q psy18239          4 DRCQHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAV   59 (97)
Q Consensus         4 ~~~~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~   59 (97)
                      .....+.++.++ |.|+|++|||++++..+|||+++|++|++++.|++++++.++..
T Consensus       177 ~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P~~  233 (240)
T d1g2912         177 RMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPAN  233 (240)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred             HHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence            344556666554 99999999999999999999999999999999999999877654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.21  E-value=9.7e-12  Score=80.56  Aligned_cols=54  Identities=15%  Similarity=0.198  Sum_probs=46.7

Q ss_pred             hhhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          5 RCQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         5 ~~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      .+..+.++.+ .|.|+|++|||++++..+|||+++|.+|++++.|++++++.++.
T Consensus       179 i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~  233 (242)
T d1oxxk2         179 ARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPV  233 (242)
T ss_dssp             HHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred             HHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence            3445666654 49999999999999999999999999999999999999987654

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=1e-11  Score=80.04  Aligned_cols=54  Identities=15%  Similarity=0.070  Sum_probs=46.5

Q ss_pred             hhhhhhhc-cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcC
Q psy18239          6 CQHSRKNS-QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAV   59 (97)
Q Consensus         6 ~~~~~~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~   59 (97)
                      +..+.++. +.|.|+|++|||++++..+|||+++|++|+++..|++++++.++..
T Consensus       170 ~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~  224 (232)
T d2awna2         170 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD  224 (232)
T ss_dssp             HHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCCC
Confidence            34466654 4599999999999999999999999999999999999999876543

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.20  E-value=1.4e-11  Score=79.64  Aligned_cols=53  Identities=26%  Similarity=0.427  Sum_probs=47.3

Q ss_pred             hhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          6 CQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         6 ~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      +..+.+++++|.|||++||+++++..+|||+++|++|++++.|+++++..++.
T Consensus       173 ~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~  225 (238)
T d1vpla_         173 RKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK  225 (238)
T ss_dssp             HHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhccC
Confidence            44466666779999999999999999999999999999999999999987765

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=5.5e-12  Score=81.68  Aligned_cols=57  Identities=14%  Similarity=0.180  Sum_probs=48.5

Q ss_pred             hhhhhhhhhccC-CcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhcCc
Q psy18239          4 DRCQHSRKNSQT-WISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFAVG   60 (97)
Q Consensus         4 ~~~~~~~~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~   60 (97)
                      ..+..+.++.++ |.|+|++|||++++..+|||+++|.+|++++.|++++++.++...
T Consensus       178 ~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~P~~~  235 (240)
T d3dhwc1         178 SILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTP  235 (240)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCSSCCT
T ss_pred             HHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCh
Confidence            344556676554 999999999999999999999999999999999999987765543

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.15  E-value=2.7e-11  Score=78.33  Aligned_cols=51  Identities=14%  Similarity=0.032  Sum_probs=45.5

Q ss_pred             hhhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239          5 RCQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus         5 ~~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      .+..+++++++|.|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus       178 i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~  228 (240)
T d1ji0a_         178 VFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD  228 (240)
T ss_dssp             HHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred             HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence            345566677779999999999999999999999999999999999999865

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.15  E-value=2.4e-11  Score=78.15  Aligned_cols=53  Identities=15%  Similarity=0.183  Sum_probs=45.9

Q ss_pred             hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      ...+.++.+ .|.|+|++|||++++..+|||+++|.+|++++.|++++++.++.
T Consensus       167 ~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~  220 (229)
T d3d31a2         167 REMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPV  220 (229)
T ss_dssp             HHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCC
T ss_pred             HHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence            344566544 58999999999999999999999999999999999999987654

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.07  E-value=3.9e-11  Score=78.09  Aligned_cols=51  Identities=20%  Similarity=0.186  Sum_probs=44.8

Q ss_pred             hhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          6 CQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         6 ~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      ...+.+++++|.|||++|||++++..+|||+++|.+|++++.|+++++...
T Consensus       190 ~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~~  240 (254)
T d1g6ha_         190 FNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN  240 (254)
T ss_dssp             HHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHHHH
T ss_pred             HHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHHhhc
Confidence            445666777799999999999999999999999999999999999886553

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.07  E-value=1.2e-10  Score=75.20  Aligned_cols=52  Identities=23%  Similarity=0.211  Sum_probs=45.0

Q ss_pred             hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      ...+.++.+ .|.|+|++|||++++..+|||+++|++|++++.|+++++.+..
T Consensus       166 ~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~  218 (240)
T d2onka1         166 MEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK  218 (240)
T ss_dssp             HHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             HHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCC
Confidence            444556654 4899999999999999999999999999999999999997643

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=4.2e-11  Score=77.00  Aligned_cols=51  Identities=10%  Similarity=0.045  Sum_probs=44.8

Q ss_pred             hhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          6 CQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         6 ~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      ...++++.++|.|||++||+++++..+|||+++|++|++++.|+++++++.
T Consensus       172 ~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~  222 (231)
T d1l7vc_         172 DKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP  222 (231)
T ss_dssp             HHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred             HHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence            344666677799999999999999999999999999999999999998643

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2e-09  Score=69.75  Aligned_cols=51  Identities=20%  Similarity=0.091  Sum_probs=42.4

Q ss_pred             hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      +..+.++.+ .++|+|++||+++.+. .||++++|++|++++.|+++++.+..
T Consensus       191 ~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~iv~~Gt~~eLl~~~  242 (251)
T d1jj7a_         191 EQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIREGGTHQQLMEKK  242 (251)
T ss_dssp             HHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEEEEEECHHHHHHHT
T ss_pred             HHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhCC
Confidence            344555544 4899999999999775 59999999999999999999998753

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.85  E-value=2.9e-09  Score=68.68  Aligned_cols=50  Identities=8%  Similarity=-0.017  Sum_probs=41.8

Q ss_pred             hhhhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHh
Q psy18239          5 RCQHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNK   56 (97)
Q Consensus         5 ~~~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~   56 (97)
                      .+..+.++. +++|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus       178 i~~~l~~l~-~~~Tvi~itH~l~~~~-~~D~i~vl~~G~iv~~G~~~eLl~~  227 (242)
T d1mv5a_         178 VQKALDSLM-KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVAT  227 (242)
T ss_dssp             HHHHHHHHH-TTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHHH
T ss_pred             HHHHHHHHc-CCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence            344455554 4799999999999876 5999999999999999999998764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=1.5e-09  Score=70.01  Aligned_cols=50  Identities=16%  Similarity=0.150  Sum_probs=41.5

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhhc
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKFA   58 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~   58 (97)
                      ..+.++. +++|+|++||+++.+ ..||++++|++|++++.|++++++.+..
T Consensus       180 ~~l~~l~-~~~Tvi~itH~l~~~-~~~D~i~vl~~G~Iv~~G~~~ell~~~~  229 (241)
T d2pmka1         180 RNMHKIC-KGRTVIIIAHRLSTV-KNADRIIVMEKGKIVEQGKHKELLSEPE  229 (241)
T ss_dssp             HHHHHHH-TTSEEEEECSSGGGG-TTSSEEEEEETTEEEEEECHHHHHHSTT
T ss_pred             HHHHHHh-CCCEEEEEECCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence            3444444 378999999999977 5699999999999999999999987644

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.82  E-value=2e-09  Score=69.02  Aligned_cols=46  Identities=9%  Similarity=0.071  Sum_probs=38.2

Q ss_pred             hhhhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecCh
Q psy18239          4 DRCQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSV   50 (97)
Q Consensus         4 ~~~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~   50 (97)
                      ..+..+.++.+ .|+|+|++|||++++ ++|||+++|.+|+++..|++
T Consensus       183 ~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         183 KIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEEeccC
Confidence            34556677654 599999999999976 79999999999999998864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.82  E-value=2.7e-09  Score=69.26  Aligned_cols=49  Identities=10%  Similarity=0.034  Sum_probs=41.0

Q ss_pred             hhhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          7 QHSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         7 ~~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      ..+..+. +++|+|++||+++.+ ..||+|++|++|++++.|+++++.++.
T Consensus       193 ~~l~~l~-~~~Tvi~itH~l~~~-~~~D~v~vl~~G~Iv~~G~~~eLl~~~  241 (253)
T d3b60a1         193 AALDELQ-KNRTSLVIAHRLSTI-EQADEIVVVEDGIIVERGTHSELLAQH  241 (253)
T ss_dssp             HHHHHHH-TTSEEEEECSCGGGT-TTCSEEEEEETTEEEEEECHHHHHHHT
T ss_pred             HHHHHhc-cCCEEEEEECCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCC
Confidence            3444444 378999999999977 569999999999999999999998753

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.68  E-value=1.3e-08  Score=66.13  Aligned_cols=48  Identities=17%  Similarity=0.089  Sum_probs=40.1

Q ss_pred             hhhhhccCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHHhh
Q psy18239          8 HSRKNSQTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKNKF   57 (97)
Q Consensus         8 ~~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~   57 (97)
                      .+..+. .++|+|++||+++.+ ..||++++|++|+++..|+++++.++.
T Consensus       196 ~l~~l~-~~~TvI~itH~~~~~-~~~D~ii~l~~G~iv~~G~~~eLl~~~  243 (255)
T d2hyda1         196 ALDVLS-KDRTTLIVAHRLSTI-THADKIVVIENGHIVETGTHRELIAKQ  243 (255)
T ss_dssp             HHHHHT-TTSEEEEECSSGGGT-TTCSEEEEEETTEEEEEECHHHHHHTT
T ss_pred             HHHHHh-cCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCC
Confidence            344444 378999999999977 569999999999999999999998753

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=1.8e-08  Score=66.14  Aligned_cols=41  Identities=15%  Similarity=0.173  Sum_probs=36.9

Q ss_pred             cCCcEEEEEeCCHHHHHhhcCeEEEEeCCEEeEecChHHHHH
Q psy18239         14 QTWISFGLFYSSLEECEALCTRLAVMVNGRLSCLGSVQHLKN   55 (97)
Q Consensus        14 ~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~   55 (97)
                      ..++|+|++||+++.+ .+|||+++|++|++++.|+++++..
T Consensus       206 ~~~~tvi~itH~~~~l-~~aDrI~vl~~G~i~~~Gt~~eL~~  246 (281)
T d1r0wa_         206 MANKTRILVTSKMEHL-RKADKILILHQGSSYFYGTFSELQS  246 (281)
T ss_dssp             TTTSEEEEECSCHHHH-HTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             hCCCEEEEEechHHHH-HhCCEEEEEECCEEEEECCHHHHhc
Confidence            3578999999999876 5799999999999999999999865

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.79  E-value=0.7  Score=29.59  Aligned_cols=30  Identities=13%  Similarity=0.048  Sum_probs=21.5

Q ss_pred             hhhhccCCcEEEEEeCCHHHHHhhcCeEEEE
Q psy18239          9 SRKNSQTWISFGLFYSSLEECEALCTRLAVM   39 (97)
Q Consensus         9 ~~~~~~~~~tiii~tH~~~~~~~~~d~i~~l   39 (97)
                      +..+...+.-+|++||++..+. .+|+.+.+
T Consensus       379 l~~~~~~~~Q~I~iTH~~~~~~-~ad~~~~V  408 (427)
T d1w1wa_         379 IRRHRNPDLQFIVISLKNTMFE-KSDALVGV  408 (427)
T ss_dssp             HHHHCBTTBEEEEECSCHHHHT-TCSEEEEE
T ss_pred             HHHHhCCCCEEEEEeCCHHHHH-hcccEEEE
Confidence            4444444567999999999665 58997755

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.45  E-value=0.23  Score=29.84  Aligned_cols=32  Identities=9%  Similarity=-0.061  Sum_probs=20.2

Q ss_pred             hhhhhhhcc-CCcEEEEEeCCHHHHHhhcCeEEEEeC
Q psy18239          6 CQHSRKNSQ-TWISFGLFYSSLEECEALCTRLAVMVN   41 (97)
Q Consensus         6 ~~~~~~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~   41 (97)
                      ++.+.++.+ .+.+++.++|++    .+||++..|.+
T Consensus       165 ~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~  197 (200)
T d1sgwa_         165 LKSILEILKEKGIVIISSREEL----SYCDVNENLHK  197 (200)
T ss_dssp             HHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred             HHHHHHHHhCCCEEEEEEechh----hhcchhhheee
Confidence            344555544 466666666665    47999988854