Psyllid ID: psy1834

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MMMTTAILIPIGKESSTMGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQTNDYYAQLNRKNPKDYEHEV
Secondary Structure (PSIPRED)
ccccccEEEEcccccccccccccccccccccEEEEEEcccccHHHHHccHHHHHHHHHHHHHccccEEHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEccccccHccccccccccccccEEEEEEccHHHHcHHHHHHHHcHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHccc
Coil and Loop (DISEMBL)
MMMTTAILIpigkesstmghhgfgnlgphIRNIVYHRISMFEQRAFAgllnpglqNTLRRItesaprtvpYFLITYVIITQTNDYYAQLnrknpkdyehev
Flexible Loop (DISEMBL)
MMMTTAILIPIGKESSTMGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRItesaprtvPYFLITYVIITQTNDYYAQLNrknpkdyehev
Low Complexity Region (SEG)
MMMTTAILIPIGKESSTMGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQTNDYYAQLNRKNPKDYEHEV
Disordered region (IsUnstruct)
*****AILIPIGKE*STMGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQTNDYYAQL************
Disordered Region (DISOPRED)
********IPIGKESSTMGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQTNDYYAQLNRKN********
Disordered Region (DISEMBL)
MMMTTAILIPIGKESSTMGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQTNDYYAQLNRKNPKDYEHEV
Disordered Region (DISPRO)
*MMTTAILIPIGKESSTMGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQTNDYYAQLNRKNP*D*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMMTTAILIPIGKESSTMGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQTNDYYAQLNRKNPKDYEHEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
Q9CQ69	82	Cytochrome b-c1 complex s	yes	N/A	0.801	0.987	0.421	1e-10
Q7TQ16	82	Cytochrome b-c1 complex s	yes	N/A	0.801	0.987	0.433	2e-10
O14949	82	Cytochrome b-c1 complex s	yes	N/A	0.801	0.987	0.409	5e-10
Q5R597	82	Cytochrome b-c1 complex s	yes	N/A	0.762	0.939	0.384	2e-08
Q2L897	82	Cytochrome b-c1 complex s	yes	N/A	0.762	0.939	0.371	7e-08
P13271	82	Cytochrome b-c1 complex s	yes	N/A	0.762	0.939	0.346	7e-07

>sp|Q9CQ69|QCR8_MOUSE Cytochrome b-c1 complex subunit 8 OS=Mus musculus GN=Uqcrq PE=1 SV=3

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 18  MGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYV 77
           MG   FGNL   IR+++ + +S FEQRAF    + G+ N LRR  E   R  P F++ Y+
Sbjct: 1   MGRE-FGNLA-RIRHVISYSLSPFEQRAFPSYFSKGIPNVLRRTRERILRVAPPFVVVYL 58

Query: 78  IITQTNDYYAQLNRKNPKDYEHE 100
           I T  N  + Q  RKNP  YE++
Sbjct: 59  IYTWGNQEFEQSKRKNPAMYEND 81

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This subunit, together with cytochrome b, binds to ubiquinone.
Mus musculus (taxid: 10090)

>sp|Q7TQ16|QCR8_RAT Cytochrome b-c1 complex subunit 8 OS=Rattus norvegicus GN=Uqcrq PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 18  MGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYV 77
           MG   FGNL   IR+++ + +S FEQRAF    + G+ N LRR  E   R  P F++ Y+
Sbjct: 1   MGRE-FGNLT-RIRHVISYSLSPFEQRAFPHYFSKGIPNVLRRTRERILRVAPPFVLFYL 58

Query: 78  IITQTNDYYAQLNRKNPKDYEHE 100
           I T  N  +AQ  RKNP  YE++
Sbjct: 59  IYTWGNQEFAQSKRKNPAKYEND 81

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This subunit, together with cytochrome b, binds to ubiquinone.

Rattus norvegicus (taxid: 10116)

>sp|O14949|QCR8_HUMAN Cytochrome b-c1 complex subunit 8 OS=Homo sapiens GN=UQCRQ PE=1 SV=4

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 2/83 (2%)

Query: 18  MGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYV 77
           MG   FGNL   +R+++ + +S FEQRA+  +   G+ N LRRI ES  R VP F++ Y+
Sbjct: 1   MGRE-FGNLT-RMRHVISYSLSPFEQRAYPHVFTKGIPNVLRRIRESFFRVVPQFVVFYL 58

Query: 78  IITQTNDYYAQLNRKNPKDYEHE 100
           I T   + + +  RKNP  YE++
Sbjct: 59  IYTWGTEEFERSKRKNPAAYEND 81

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This subunit, together with cytochrome b, binds to ubiquinone.

Homo sapiens (taxid: 9606)

>sp|Q5R597|QCR8_PONAB Cytochrome b-c1 complex subunit 8 OS=Pongo abelii GN=UQCRQ PE=3 SV=3

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 23  FGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQT 82
           FGNL   +R+++ + +S FEQRA   +   G+ N LRR  ES  R  P F++ Y+I T  
Sbjct: 5   FGNLT-RMRHVISYSLSPFEQRAHPHVFTKGIPNVLRRFRESFFRVAPQFVVFYLIYTWG 63

Query: 83  NDYYAQLNRKNPKDYEHE 100
            + + +  RKNP  YE++
Sbjct: 64  TEEFERSKRKNPAAYEND 81

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This subunit, together with cytochrome b, binds to ubiquinone.

Pongo abelii (taxid: 9601)

>sp|Q2L897|QCR8_AILME Cytochrome b-c1 complex subunit 8 OS=Ailuropoda melanoleuca GN=UQCRQ PE=3 SV=3

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 23  FGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQT 82
           FGNL   +R+++ + +S FEQRAF    + G+ N LRR+     R VP F+  Y++ T  
Sbjct: 5   FGNLT-RMRHVITYSLSPFEQRAFPHYFSKGIPNVLRRMRACVLRVVPPFVAFYLVYTWG 63

Query: 83  NDYYAQLNRKNPKDYEHE 100
              +    RKNP  YE++
Sbjct: 64  TQEFENSKRKNPAAYEND 81

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This subunit, together with cytochrome b, binds to ubiquinone.

Ailuropoda melanoleuca (taxid: 9646)

>sp|P13271|QCR8_BOVIN Cytochrome b-c1 complex subunit 8 OS=Bos taurus GN=UQCRQ PE=1 SV=3

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 23  FGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQT 82
           FG+L   +R+++ + +S FEQRAF    + G+ N LRR      R  P F+  Y++ T  
Sbjct: 5   FGHLT-RVRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYTWG 63

Query: 83  NDYYAQLNRKNPKDYEHE 100
              + +  RKNP  YE++
Sbjct: 64  TQEFEKSKRKNPAAYEND 81

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This subunit, together with cytochrome b, binds to ubiquinone.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
269784711	83	cytochrome b-c1 complex subunit 8 [Nason	0.811	0.987	0.493	3e-13
170053995	82	low molecular mass ubiquinone-binding pr	0.792	0.975	0.469	4e-12
58382014	87	AGAP010337-PA [Anopheles gambiae str. PE	0.851	0.988	0.420	2e-11
157108874	82	ubiquinone binding protein, putative [Ae	0.782	0.963	0.437	2e-11
45934567	82	low molecular mass ubiquinone-binding pr	0.782	0.963	0.425	5e-11
332026169	82	Cytochrome b-c1 complex subunit 8 [Acrom	0.762	0.939	0.410	1e-10
91080173	82	PREDICTED: similar to ubiquinol-cytochro	0.782	0.963	0.45	3e-10
195127401	89	GI13339 [Drosophila mojavensis] gi|19391	0.841	0.955	0.430	5e-10
312147386	82	cytochrome b-c1 complex subunit 8 [Oryct	0.762	0.939	0.423	5e-10
307209986	82	Cytochrome b-c1 complex subunit 8 [Harpe	0.801	0.987	0.409	5e-10

>gi|269784711|ref|NP_001161454.1| cytochrome b-c1 complex subunit 8 [Nasonia vitripennis]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 55/83 (66%), Gaps = 1/83 (1%)

Query: 18  MGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYV 77
           MGH  FGNL   IR IVY R+S  EQ+AFAG ++ G+ N +RR  ES    +P  +ITY+
Sbjct: 1   MGHLDFGNLAK-IRGIVYFRLSPHEQKAFAGAISHGVPNMIRRFRESVFHILPSAIITYM 59

Query: 78  IITQTNDYYAQLNRKNPKDYEHE 100
           II   +    +L+RKNPKDYE++
Sbjct: 60  IIDWADKKNIELSRKNPKDYEND 82

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170053995|ref|XP_001862927.1| low molecular mass ubiquinone-binding protein [Culex quinquefasciatus] gi|167874397|gb|EDS37780.1| low molecular mass ubiquinone-binding protein [Culex quinquefasciatus]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 49/81 (60%), Gaps = 1/81 (1%)

Query: 21  HGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIIT 80
           HGFG L   +R IV H+IS FEQRAFA      + NTLRRI        P F++ Y++  
Sbjct: 3   HGFGELA-KVRGIVTHKISPFEQRAFANWWTKAIPNTLRRIRSQIFIVAPPFVVGYLVYN 61

Query: 81  QTNDYYAQLNRKNPKDYEHEV 101
                + QLNRKNPKD+E++V
Sbjct: 62  YVETLHTQLNRKNPKDFENDV 82

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58382014|ref|XP_311607.2| AGAP010337-PA [Anopheles gambiae str. PEST] gi|55242837|gb|EAA07167.2| AGAP010337-PA [Anopheles gambiae str. PEST]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 57/88 (64%), Gaps = 2/88 (2%)

Query: 13  KESSTMGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYF 72
           ++ + MGH GFG L   +R IV H+IS FEQRAFA +++ G+ NTLRRI        P F
Sbjct: 1   RQLNIMGH-GFGELA-KVRGIVTHKISPFEQRAFANVISKGVPNTLRRIRSQVFIVAPPF 58

Query: 73  LITYVIITQTNDYYAQLNRKNPKDYEHE 100
           ++ Y++     + + Q+NRKNP ++E++
Sbjct: 59  VMGYMVYNYIENLHTQMNRKNPAEFEND 86

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157108874|ref|XP_001650425.1| ubiquinone binding protein, putative [Aedes aegypti] gi|403182691|gb|EJY57567.1| AAEL005143-PB [Aedes aegypti]

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 1/80 (1%)

Query: 21  HGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIIT 80
           HGFG L   +R IV H+IS +EQ+AFAG     + NTLRRI        P F++ Y++  
Sbjct: 3   HGFGELA-KVRGIVTHKISSYEQKAFAGWWTKAIPNTLRRIRSQIFIVTPPFVMGYLVYN 61

Query: 81  QTNDYYAQLNRKNPKDYEHE 100
              + + Q+NRKNP DYE++
Sbjct: 62  YVENLHTQINRKNPADYEND 81

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45934567|gb|AAS79343.1| low molecular mass ubiquinone-binding protein [Aedes aegypti]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 1/80 (1%)

Query: 21  HGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIIT 80
           HGFG L   +R IV H+I+ +EQ+AFAG     + NTLRRI        P F++ Y++  
Sbjct: 3   HGFGELA-KVRGIVTHKIASYEQKAFAGWWTKAIPNTLRRIRSQIFIVTPPFVMGYLVYN 61

Query: 81  QTNDYYAQLNRKNPKDYEHE 100
              + + Q+NRKNP DYE++
Sbjct: 62  YVENLHTQINRKNPADYEND 81

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026169|gb|EGI66311.1| Cytochrome b-c1 complex subunit 8 [Acromyrmex echinatior]

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 53/78 (67%), Gaps = 1/78 (1%)

Query: 23  FGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQT 82
           FGNL   +  IVY+R+S +EQ+AF GL++ G+ N +RR   S  +  P+F+ +Y+++   
Sbjct: 5   FGNL-YKLNGIVYYRLSPYEQKAFKGLISEGVPNLIRRFQGSVFKIAPFFMFSYLLVNWA 63

Query: 83  NDYYAQLNRKNPKDYEHE 100
           N+    L+RKNPK+YE++
Sbjct: 64  NEKNHALSRKNPKEYEND 81

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080173|ref|XP_970371.1| PREDICTED: similar to ubiquinol-cytochrome C reductase complex [Tribolium castaneum] gi|270006414|gb|EFA02862.1| ubiquinol-cytochrome c reductase, complex III subunit VII [Tribolium castaneum]

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 1/80 (1%)

Query: 21  HGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIIT 80
           HGFG L   +R I+ +R+S FE +AF+G+L+ G+ N+LRRI +     VP  L+ YVI  
Sbjct: 3   HGFGQLY-KLRGIITYRLSPFELKAFSGILSHGVPNSLRRIKDEILYVVPPLLMGYVIYD 61

Query: 81  QTNDYYAQLNRKNPKDYEHE 100
           Q    + +L RKNP DYE++
Sbjct: 62  QVEKEHHRLMRKNPADYEND 81

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195127401|ref|XP_002008157.1| GI13339 [Drosophila mojavensis] gi|193919766|gb|EDW18633.1| GI13339 [Drosophila mojavensis]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 1/86 (1%)

Query: 15  SSTMGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLI 74
           SS +    FGNL   +  IV +++S FEQRAFAG ++ G+ N +RRI  +  R VP F++
Sbjct: 4   SSILNGAHFGNLA-KVHGIVTYKLSPFEQRAFAGAISHGVPNFMRRIRSNIFRVVPPFIV 62

Query: 75  TYVIITQTNDYYAQLNRKNPKDYEHE 100
            Y+I   T   +  L RKNP DYE++
Sbjct: 63  GYLIFDLTERKHTALLRKNPADYEND 88

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312147386|ref|NP_001185860.1| cytochrome b-c1 complex subunit 8 [Oryctolagus cuniculus]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 1/78 (1%)

Query: 23  FGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQT 82
           FGNL   +R+++ + +S FEQRAF    + G+ N LRR  ES  R VP F++ Y++ T  
Sbjct: 5   FGNLT-RVRHVISYSLSPFEQRAFPHFFSKGIPNLLRRTRESVLRVVPPFVVFYLVYTWG 63

Query: 83  NDYYAQLNRKNPKDYEHE 100
           N+ + +  RKNP  YEH+
Sbjct: 64  NEEFEKSKRKNPAAYEHD 81

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307209986|gb|EFN86755.1| Cytochrome b-c1 complex subunit 8 [Harpegnathos saltator]

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 54/83 (65%), Gaps = 2/83 (2%)

Query: 18  MGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYV 77
           MG + FGNL   I  +VY RIS +EQ+A  G+++ G+ N +RR+  +  R  P F+ TY+
Sbjct: 1   MGKY-FGNLA-KISGVVYFRISPYEQKALKGVISDGVPNLIRRLKGNVFRIAPIFMGTYL 58

Query: 78  IITQTNDYYAQLNRKNPKDYEHE 100
           ++   ++    L+RKNPKDYE++
Sbjct: 59  LMCWADETNRALHRKNPKDYEND 81

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
RGD|1562350	82	Uqcrq "ubiquinol-cytochrome c	0.801	0.987	0.433	3.9e-12
MGI|MGI:107807	82	Uqcrq "ubiquinol-cytochrome c	0.801	0.987	0.421	5e-12
UNIPROTKB|O14949	82	UQCRQ "Cytochrome b-c1 complex	0.801	0.987	0.409	1e-11
FB|FBgn0036728	89	CG7580 [Drosophila melanogaste	0.792	0.898	0.414	2.8e-11
UNIPROTKB|F1N828	117	LOC100858114 "Uncharacterized	0.821	0.709	0.376	7.4e-11
ZFIN|ZDB-GENE-040718-199	82	uqcrq "ubiquinol-cytochrome c	0.801	0.987	0.361	3.2e-10
UNIPROTKB|E2RTB5	82	UQCRQ "Uncharacterized protein	0.801	0.987	0.385	4.1e-10
UNIPROTKB|F1RI18	82	UQCRQ "Uncharacterized protein	0.801	0.987	0.349	7.6e-09
UNIPROTKB|P13271	82	UQCRQ "Cytochrome b-c1 complex	0.801	0.987	0.349	9.7e-09
POMBASE|SPAC1782.07	92	qcr8 "ubiquinol-cytochrome-c r	0.762	0.836	0.325	0.00045

RGD|1562350 Uqcrq "ubiquinol-cytochrome c reductase, complex III subunit VII" [Rattus norvegicus (taxid:10116)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 36/83 (43%), Positives = 49/83 (59%)

Query:    18 MGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYV 77
             MG   FGNL   IR+++ + +S FEQRAF    + G+ N LRR  E   R  P F++ Y+
Sbjct:     1 MGRE-FGNL-TRIRHVISYSLSPFEQRAFPHYFSKGIPNVLRRTRERILRVAPPFVLFYL 58

Query:    78 IITQTNDYYAQLNRKNPKDYEHE 100
             I T  N  +AQ  RKNP  YE++
Sbjct:    59 IYTWGNQEFAQSKRKNPAKYEND 81

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0021539 "subthalamus development" evidence=IEA

GO:0021548 "pons development" evidence=IEA

GO:0021680 "cerebellar Purkinje cell layer development" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0021794 "thalamus development" evidence=IEA

GO:0021854 "hypothalamus development" evidence=IEA

GO:0021860 "pyramidal neuron development" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0030901 "midbrain development" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

MGI|MGI:107807 Uqcrq "ubiquinol-cytochrome c reductase, complex III subunit VII" [Mus musculus (taxid:10090)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 35/83 (42%), Positives = 48/83 (57%)

Query:    18 MGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYV 77
             MG   FGNL   IR+++ + +S FEQRAF    + G+ N LRR  E   R  P F++ Y+
Sbjct:     1 MGRE-FGNLA-RIRHVISYSLSPFEQRAFPSYFSKGIPNVLRRTRERILRVAPPFVVVYL 58

Query:    78 IITQTNDYYAQLNRKNPKDYEHE 100
             I T  N  + Q  RKNP  YE++
Sbjct:    59 IYTWGNQEFEQSKRKNPAMYEND 81

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

UNIPROTKB|O14949 UQCRQ "Cytochrome b-c1 complex subunit 8" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 34/83 (40%), Positives = 51/83 (61%)

Query:    18 MGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYV 77
             MG   FGNL   +R+++ + +S FEQRA+  +   G+ N LRRI ES  R VP F++ Y+
Sbjct:     1 MGRE-FGNL-TRMRHVISYSLSPFEQRAYPHVFTKGIPNVLRRIRESFFRVVPQFVVFYL 58

Query:    78 IITQTNDYYAQLNRKNPKDYEHE 100
             I T   + + +  RKNP  YE++
Sbjct:    59 IYTWGTEEFERSKRKNPAAYEND 81

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0021539 "subthalamus development" evidence=IEA

GO:0021548 "pons development" evidence=IEA

GO:0021680 "cerebellar Purkinje cell layer development" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0021794 "thalamus development" evidence=IEA

GO:0021854 "hypothalamus development" evidence=IEA

GO:0021860 "pyramidal neuron development" evidence=IEA

GO:0030901 "midbrain development" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

FB|FBgn0036728 CG7580 [Drosophila melanogaster (taxid:7227)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 34/82 (41%), Positives = 48/82 (58%)

Query:    19 GHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVI 78
             G H FGNL   +  IV +++S FEQRAFAG ++ GL N +RR   +     P F++ Y+I
Sbjct:     9 GQH-FGNLAK-VHGIVTYKLSPFEQRAFAGAISKGLPNMVRRFRSNVFIVTPPFIVGYLI 66

Query:    79 ITQTNDYYAQLNRKNPKDYEHE 100
                T   +  L RKNP DY ++
Sbjct:    67 YDLTERKHTALLRKNPADYAND 88

GO:0005750 "mitochondrial respiratory chain complex III" evidence=ISS

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=ISS

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=ISS

GO:0048039 "ubiquinone binding" evidence=ISS

GO:0005811 "lipid particle" evidence=IDA

UNIPROTKB|F1N828 LOC100858114 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 32/85 (37%), Positives = 49/85 (57%)

Query:    16 STMGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLIT 75
             +TMG H FGNL   +R+I+ + +S FEQRA   + +  L N  RR +    +  P FL  
Sbjct:    34 TTMGIH-FGNLA-RVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGA 91

Query:    76 YVIITQTNDYYAQLNRKNPKDYEHE 100
             Y++ +     + +L RKNP DYE++
Sbjct:    92 YLLYSWGTQEFERLKRKNPADYEND 116

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0021539 "subthalamus development" evidence=IEA

GO:0021548 "pons development" evidence=IEA

GO:0021680 "cerebellar Purkinje cell layer development" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0021794 "thalamus development" evidence=IEA

GO:0021854 "hypothalamus development" evidence=IEA

GO:0021860 "pyramidal neuron development" evidence=IEA

GO:0030901 "midbrain development" evidence=IEA

ZFIN|ZDB-GENE-040718-199 uqcrq "ubiquinol-cytochrome c reductase, complex III subunit VII" [Danio rerio (taxid:7955)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 30/83 (36%), Positives = 48/83 (57%)

Query:    18 MGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYV 77
             MG H FGNL   +R+++ + IS FEQ+AFA   + G+ N  RR   S  +  P   +TY+
Sbjct:     1 MGLH-FGNLAK-VRHVITYSISPFEQKAFANYFSKGVPNLWRRFRSSVFKIAPPLALTYL 58

Query:    78 IITQTNDYYAQLNRKNPKDYEHE 100
               T  N  + +  ++NP D+E++
Sbjct:    59 TYTWGNHVHEECKKRNPADFEND 81

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E2RTB5 UQCRQ "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 32/83 (38%), Positives = 47/83 (56%)

Query:    18 MGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYV 77
             MG   FGNL   +R+++ + +S FEQRAF    + G+ N LRR    A R VP F+  Y+
Sbjct:     1 MGRE-FGNL-TRMRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACALRVVPPFIAFYL 58

Query:    78 IITQTNDYYAQLNRKNPKDYEHE 100
             + T     + +  RKNP  YE++
Sbjct:    59 VYTWGTQEFEKSKRKNPAAYEND 81

GO:0030901 "midbrain development" evidence=IEA

GO:0021860 "pyramidal neuron development" evidence=IEA

GO:0021854 "hypothalamus development" evidence=IEA

GO:0021794 "thalamus development" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0021680 "cerebellar Purkinje cell layer development" evidence=IEA

GO:0021548 "pons development" evidence=IEA

GO:0021539 "subthalamus development" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

UNIPROTKB|F1RI18 UQCRQ "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 29/83 (34%), Positives = 45/83 (54%)

Query:    18 MGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYV 77
             MG   FG+L   +R+++ + +S FEQRAF      G+ N LRR      R  P F++ Y+
Sbjct:     1 MGRE-FGHL-TRMRHVITYSLSPFEQRAFPHYFTKGIPNVLRRTRACILRVAPPFVVFYL 58

Query:    78 IITQTNDYYAQLNRKNPKDYEHE 100
             + T     + +  RKNP  YE++
Sbjct:    59 VYTWGTQEFEKSKRKNPAAYEND 81

GO:0030901 "midbrain development" evidence=IEA

GO:0021860 "pyramidal neuron development" evidence=IEA

GO:0021854 "hypothalamus development" evidence=IEA

GO:0021794 "thalamus development" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0021680 "cerebellar Purkinje cell layer development" evidence=IEA

GO:0021548 "pons development" evidence=IEA

GO:0021539 "subthalamus development" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

UNIPROTKB|P13271 UQCRQ "Cytochrome b-c1 complex subunit 8" [Bos taurus (taxid:9913)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 29/83 (34%), Positives = 45/83 (54%)

Query:    18 MGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYV 77
             MG   FG+L   +R+++ + +S FEQRAF    + G+ N LRR      R  P F+  Y+
Sbjct:     1 MGRQ-FGHL-TRVRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYL 58

Query:    78 IITQTNDYYAQLNRKNPKDYEHE 100
             + T     + +  RKNP  YE++
Sbjct:    59 VYTWGTQEFEKSKRKNPAAYEND 81

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0030901 "midbrain development" evidence=IEA

GO:0021860 "pyramidal neuron development" evidence=IEA

GO:0021854 "hypothalamus development" evidence=IEA

GO:0021794 "thalamus development" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0021680 "cerebellar Purkinje cell layer development" evidence=IEA

GO:0021548 "pons development" evidence=IEA

GO:0021539 "subthalamus development" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

POMBASE|SPAC1782.07 qcr8 "ubiquinol-cytochrome-c reductase complex subunit 7" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 26/80 (32%), Positives = 38/80 (47%)

Query:    23 FGNLG-PHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRI-TESAPRTVPYFLITYVIIT 80
             +G+LG P  + I+ + +S F+QR  AG      QN  RR+ TE     +P F I Y I  
Sbjct:    14 WGHLGGPKQKGIITYSLSPFQQRPMAGFFKTSTQNMFRRVMTEGLYVAIP-FGIAYYIYC 72

Query:    81 QTNDYYAQLNRKNPKDYEHE 100
                +    LN K+ +    E
Sbjct:    73 WGKERNEFLNSKHGRHLVEE 92


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.138   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      101       101   0.00091  102 3  11 22  0.37    30
                                                     29  0.47    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  510 (54 KB)
  Total size of DFA:  104 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  9.71u 0.09s 9.80t   Elapsed:  00:00:05
  Total cpu time:  9.71u 0.09s 9.80t   Elapsed:  00:00:07
  Start:  Thu Aug 15 12:22:32 2013   End:  Thu Aug 15 12:22:39 2013

GO:0005739 "mitochondrion" evidence=IDA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IC

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IGI

GO:0009060 "aerobic respiration" evidence=ISO

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IGI

GO:0048039 "ubiquinone binding" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O14949	QCR8_HUMAN	No assigned EC number	0.4096	0.8019	0.9878	yes	N/A
Q5R597	QCR8_PONAB	No assigned EC number	0.3846	0.7623	0.9390	yes	N/A
P13271	QCR8_BOVIN	No assigned EC number	0.3461	0.7623	0.9390	yes	N/A
Q2L897	QCR8_AILME	No assigned EC number	0.3717	0.7623	0.9390	yes	N/A
Q9CQ69	QCR8_MOUSE	No assigned EC number	0.4216	0.8019	0.9878	yes	N/A
Q7TQ16	QCR8_RAT	No assigned EC number	0.4337	0.8019	0.9878	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	101
pfam02939	80	pfam02939, UcrQ, UcrQ family	5e-14

>gnl|CDD|202478 pfam02939, UcrQ, UcrQ family

 Score = 61.3 bits (149), Expect = 5e-14
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 22  GFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQ 81
           GFG   P  + I+ + +S FEQR  AG  +  + NT RR+        P F+  Y+I   
Sbjct: 3   GFGG-LPKQKGIITYALSPFEQRPLAGFFHKAVFNTFRRVRSQILYVAPPFIAAYLIYDW 61

Query: 82  TNDYYAQLNRKNPKDYEHE 100
             +    LNRKN +D  ++
Sbjct: 62  GKERNEALNRKNGRDEAND 80

The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex. This family represents the 9.5 kDa subunit of the complex. Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
PF02939	80	UcrQ: UcrQ family; InterPro: IPR004205 The ubiquin	100.0
KOG4116|consensus	90		100.0
PF10890	72	DUF2741: Protein of unknown function (DUF2741); In	99.07

>PF02939 UcrQ: UcrQ family; InterPro: IPR004205 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multi-enzyme complex [], which recognises a mitochondrial targeting presequence

Probab=100.00  E-value=2.3e-45  Score=244.37  Aligned_cols=80  Identities=41%  Similarity=0.699  Sum_probs=73.1

Q ss_pred             CCCCCCCCCceeeeEEEEEcCccchhhhccccchhhhhhHhhhhcccCeeehhhheehhhhhhcHHHHHHhhCCCCCCcc
Q psy1834          19 GHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQTNDYYAQLNRKNPKDYE   98 (101)
Q Consensus        19 G~~~fG~l~~k~rgivtYsLSP~eQra~aG~~~~~i~N~~RR~~~q~~~~~ppfi~~Y~iy~Wa~~~~~~~~rK~p~dye   98 (101)
                      || +||+|. |||||+||+|||||||||+|++++||||++||+++|++||+||||++|+||+||+++||+++||||+|||
T Consensus         1 ~~-gfg~l~-k~kgi~tYslSP~eQr~~ag~~~~~i~N~~RR~~~q~~~v~ppfi~~y~i~~Wa~~~~~~~~rK~p~~~~   78 (80)
T PF02939_consen    1 GW-GFGGLP-KQKGIITYSLSPFEQRPFAGAFSKGIFNTFRRFRSQVLYVAPPFIVGYLIYDWANEENEYLNRKNPADYE   78 (80)
T ss_dssp             BT-TCTSS----EEEEEEEE-TTGB-SSTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCGCCSC
T ss_pred             CC-cCCCCC-cccceEEEEeChhhhcccccchHhhHhHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHcCCCHHHHc
Confidence            45 788887 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC
Q psy1834          99 HE  100 (101)
Q Consensus        99 nd  100 (101)
                      ||
T Consensus        79 nd   80 (80)
T PF02939_consen   79 ND   80 (80)
T ss_dssp             CH
T ss_pred             cC
Confidence            98

The bc1 complex contains 11 subunits: 3 respiratory subunits (cytochrome b, cytochrome c1 and Rieske protein), 2 core proteins and 6 low molecular weight proteins. This family represents the 9.5 kDa subunit of the complex. This subunit together with cytochrome B binds to ubiquinone.; GO: 0008121 ubiquinol-cytochrome-c reductase activity; PDB: 1L0N_G 1SQQ_G 1PP9_G 1PPJ_T 2FYU_G 2BCC_G 1BCC_G 2A06_G 1NTZ_G 2YBB_g ....

>KOG4116|consensus

Probab=100.00  E-value=1.7e-42  Score=233.78  Aligned_cols=89  Identities=36%  Similarity=0.643  Sum_probs=82.6

Q ss_pred             CccccccccCCCCCcccCCCCCCCCCceeeeEEEEEcCccchhhhccccchhhhhhHhhhhcc-cCeeehhhheehhhhh
Q psy1834           2 MMTTAILIPIGKESSTMGHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITES-APRTVPYFLITYVIIT   80 (101)
Q Consensus         2 m~~t~~~~p~~k~~~~mG~~~fG~l~~k~rgivtYsLSP~eQra~aG~~~~~i~N~~RR~~~q-~~~~~ppfi~~Y~iy~   80 (101)
                      ||+|.+.         ||. |||||+ ||+||++|+||||||||++|+|++|+||++||++++ +++++|+||++|+||+
T Consensus         1 ~~~t~~~---------~g~-hfGnl~-K~~giisYaLSPfeQra~~g~F~~~~~n~fRr~~~~~~y~~iP~~Iv~yliy~   69 (90)
T KOG4116|consen    1 MRKTYVG---------MGG-HFGNLG-KMKGIISYALSPFEQRAYAGFFDKAFPNMFRRFRSDQLYVVIPQFIVAYLIYD   69 (90)
T ss_pred             CCcceee---------hhh-hcCCch-hccceEEEecCchhhccccchhhhhhHHHHHHhhhccEEEEeccceEEEEEEe
Confidence            5666665         777 899999 999999999999999999999999999999999777 7888999999999999


Q ss_pred             hcHHHHHHhhCCCCCCcccCC
Q psy1834          81 QTNDYYAQLNRKNPKDYEHEV  101 (101)
Q Consensus        81 Wa~~~~~~~~rK~p~dyend~  101 (101)
                      |++++||.++||||+|+.||+
T Consensus        70 wg~e~ne~l~rK~p~~~~n~~   90 (90)
T KOG4116|consen   70 WGKETNEALNRKNPADFANDQ   90 (90)
T ss_pred             cchhHhHHHhccCchhhhccC
Confidence            999999999999999999996

>PF10890 DUF2741: Protein of unknown function (DUF2741); InterPro: IPR020101 This entry represents subunit 8 of the Cytochrome b-c1 complex

Probab=99.07  E-value=8.2e-11  Score=77.24  Aligned_cols=60  Identities=17%  Similarity=0.268  Sum_probs=46.8

Q ss_pred             CceeeeEEEEEcCccchhhhccccchhhhhhH-hhhhcccCeeehhhheehhhhhhcHHHHHH
Q psy1834          27 GPHIRNIVYHRISMFEQRAFAGLLNPGLQNTL-RRITESAPRTVPYFLITYVIITQTNDYYAQ   88 (101)
Q Consensus        27 ~~k~rgivtYsLSP~eQra~aG~~~~~i~N~~-RR~~~q~~~~~ppfi~~Y~iy~Wa~~~~~~   88 (101)
                      .++.|- |+|+||||+|+.|.|.| +.+|..+ ++++++|...+.-++..+++|.+|.++-|+
T Consensus         5 pvrlke-VvY~LSP~qq~Vm~GLw-KDlp~ki~hk~~enwv~a~~~~~p~~Gt~~Ya~~y~e~   65 (72)
T PF10890_consen    5 PVRLKE-VVYALSPFQQKVMPGLW-KDLPKKIHHKFSENWVSATLFLVPLVGTYWYAENYKEQ   65 (72)
T ss_pred             ccchhH-heeeeChhhhhhhhhhh-hhcHHHHHHHHhhcceeeEEEeeeehhhHHHHHHHHHH
Confidence            357777 89999999999999955 5555555 558999998887777888888888766543

The ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) is part of the mitochondrial respiratory chain. This subunit, together with cytochrome b, binds to ubiquinone. In plants, the b-c1 complex contains 10 subunits: 3 respiratory subunits, 2 core proteins and 5 low-molecular weight proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	101
3cwb_G	81	Chicken Cytochrome Bc1 Complex Inhibited By An Iodi		1e-09
1bgy_G	81	Cytochrome Bc1 Complex From Bovine Length = 81		6e-08
1bcc_G	81	Cytochrome Bc1 Complex From Chicken Length = 81		2e-06
1qcr_G	70	Crystal Structure Of Bovine Mitochondrial Cytochrom		3e-04

>pdb|3CWB|G Chain G, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 81

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 23  FGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQT 82
           FGNL   +R+I+ + +S FEQRA   + +  L N  RR +    +  P FL  Y++ +  
Sbjct: 4   FGNLA-RVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGAYLLYSWG 62
Query: 83  NDYYAQLNRKNPKDYEHE 100
              + +L RKNP DYE++
Sbjct: 63  TQEFERLKRKNPADYEND 80

>pdb|1BGY|G Chain G, Cytochrome Bc1 Complex From Bovine Length = 81

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 23  FGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQT 82
           FG+L   +R+++ + +S FEQRAF    + G+ N LRR      R  P F+  Y++ T  
Sbjct: 4   FGHLT-RVRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYTWG 62
Query: 83  NDYYAQLNRKNPKDYEHE 100
              + +  RKNP  YE++
Sbjct: 63  TQEFEKSKRKNPAAYEND 80

>pdb|1BCC|G Chain G, Cytochrome Bc1 Complex From Chicken Length = 81

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 23 FGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQT 82
          FG+L   +R+++ + +S FEQR F    + G+ N  RR+     R  P FL  Y++ T  
Sbjct: 4  FGHLT-RVRHLITYSLSPFEQRPFPHYFSKGVPNVWRRLRACILRVAPPFLAFYLLYTWG 62
Query: 83 NDYYAQLNRKNPKDY 97
             + +  RKNP  Y
Sbjct: 63 TQEFEKSKRKNPAAY 77

>pdb|1QCR|G Chain G, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 70

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 23 FGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIIT 80
          FG+L   +R+++ + +S FEQRAF    + G+ N LRR      R  P F+  Y++ T
Sbjct: 4  FGHLT-RVRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYT 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	101
3tgu_G	81	UQCRQ, mitochondrial ubiquinol-cytochrome C reduct	4e-25
1pp9_G	81	Ubiquinol-cytochrome C reductase complex ubiquino	8e-25
3cx5_H	93	Cytochrome B-C1 complex subunit 8; complex III, el	1e-17

>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G* Length = 81

 Score = 88.7 bits (220), Expect = 4e-25
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 21  HGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIIT 80
             FGNL   +R+I+ + +S FEQRA   + +  L N  RR +    +  P FL  Y++ +
Sbjct: 2   IHFGNLAR-VRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGAYLLYS 60

Query: 81  QTNDYYAQLNRKNPKDYEHE 100
                + +L RKNP DYE++
Sbjct: 61  WGTQEFERLKRKNPADYEND 80

>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ... Length = 81

 Score = 88.0 bits (218), Expect = 8e-25
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 21  HGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIIT 80
             FG+L   +R+++ + +S FEQRAF    + G+ N LRR      R  P F+  Y++ T
Sbjct: 2   RQFGHL-TRVRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYT 60

Query: 81  QTNDYYAQLNRKNPKDYEHE 100
                + +  RKNP  YE++
Sbjct: 61  WGTQEFEKSKRKNPAAYEND 80

>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G* Length = 93

 Score = 70.3 bits (172), Expect = 1e-17
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 23 FGNLG-PHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQ 81
          +G++G P  + I  + +S + Q+   G+ +  + N+ RR        +    I +     
Sbjct: 12 WGHMGGPKQKGITSYAVSPYAQKPLQGIFHNAVFNSFRRFKSQFLYVLIPAGIYWYWWKN 71

Query: 82 TNDYYAQLNRK 92
           N+Y   L  K
Sbjct: 72 GNEYNEFLYSK 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
3tgu_G	81	UQCRQ, mitochondrial ubiquinol-cytochrome C reduct	100.0
1pp9_G	81	Ubiquinol-cytochrome C reductase complex ubiquino	100.0
3cx5_H	93	Cytochrome B-C1 complex subunit 8; complex III, el	100.0

>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*

Probab=100.00  E-value=9e-49  Score=260.45  Aligned_cols=81  Identities=36%  Similarity=0.635  Sum_probs=79.0

Q ss_pred             CCCCCCCCCceeeeEEEEEcCccchhhhccccchhhhhhHhhhhcccCeeehhhheehhhhhhcHHHHHHhhCCCCCCcc
Q psy1834          19 GHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQTNDYYAQLNRKNPKDYE   98 (101)
Q Consensus        19 G~~~fG~l~~k~rgivtYsLSP~eQra~aG~~~~~i~N~~RR~~~q~~~~~ppfi~~Y~iy~Wa~~~~~~~~rK~p~dye   98 (101)
                      |+ |||||+ |||||+||+|||||||||+|+|++||||++||+++|+|||+|||+++|+||+||+++||+++||||+|||
T Consensus         1 g~-~FG~L~-k~kgIitYsLSP~~Qr~~ag~~~~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rKnpady~   78 (81)
T 3tgu_G            1 GI-HFGNLA-RVRHIITYSLSPFEQRAIPNIFSDALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKNPADYE   78 (81)
T ss_dssp             -C-CTTTSC-CCEEEEEEEECTTTBCSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCGGGSS
T ss_pred             CC-cccccc-cccceEEEEeCcccccccccchhhhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCCCHHHhc
Confidence            44 999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC
Q psy1834          99 HEV  101 (101)
Q Consensus        99 nd~  101 (101)
                      ||+
T Consensus        79 nd~   81 (81)
T 3tgu_G           79 NDQ   81 (81)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            997

>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...

Probab=100.00  E-value=3.3e-47  Score=252.78  Aligned_cols=81  Identities=35%  Similarity=0.621  Sum_probs=72.2

Q ss_pred             CCCCCCCCCceeeeEEEEEcCccchhhhccccchhhhhhHhhhhcccCeeehhhheehhhhhhcHHHHHHhhCCCCCCcc
Q psy1834          19 GHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQTNDYYAQLNRKNPKDYE   98 (101)
Q Consensus        19 G~~~fG~l~~k~rgivtYsLSP~eQra~aG~~~~~i~N~~RR~~~q~~~~~ppfi~~Y~iy~Wa~~~~~~~~rK~p~dye   98 (101)
                      |+ |||||+ ||||||||||||||||||+|+|++||||++||+++|+++++|||+++|+||+||+++||+++||||+|||
T Consensus         1 g~-~fG~l~-k~~givtYslSP~~Qr~~~g~~~~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKnp~d~~   78 (81)
T 1pp9_G            1 GR-QFGHLT-RVRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKNPAAYE   78 (81)
T ss_dssp             -C-CTTSSC-CCEEEEEEEECTTTBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC----
T ss_pred             CC-Cccccc-cccceEEEEeChhhcccccchHhhhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCCCHHHhc
Confidence            44 899999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC
Q psy1834          99 HEV  101 (101)
Q Consensus        99 nd~  101 (101)
                      ||+
T Consensus        79 nd~   81 (81)
T 1pp9_G           79 NDR   81 (81)
T ss_dssp             ---
T ss_pred             cCC
Confidence            996

>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*

Probab=100.00  E-value=4.5e-43  Score=238.21  Aligned_cols=83  Identities=20%  Similarity=0.346  Sum_probs=80.8

Q ss_pred             CCCCcccCCCCCCCCC-ceeeeEEEEEcCccchhhhccccchhhhhhHhhhhcccCeeehhhheehhhhhhcHHHHHHhh
Q psy1834          12 GKESSTMGHHGFGNLG-PHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQTNDYYAQLN   90 (101)
Q Consensus        12 ~k~~~~mG~~~fG~l~-~k~rgivtYsLSP~eQra~aG~~~~~i~N~~RR~~~q~~~~~ppfi~~Y~iy~Wa~~~~~~~~   90 (101)
                      +|.++||||  ||||+ |||||||||||||||||||+|+|+++|||++||+++|+++++||||++|+||+||+++||++|
T Consensus         3 ~~~~~y~g~--fG~l~~~k~~givtYsLSP~~Qr~~~G~~~~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l~   80 (93)
T 3cx5_H            3 PSGKTYMGW--WGHMGGPKQKGITSYAVSPYAQKPLQGIFHNAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFLY   80 (93)
T ss_dssp             CCCCCSCCB--TTBCSCCCCCSEEEEEECGGGBCCSCCSTTTTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCcEecc--CccCCCccccceEEEEeCccccccccchHhhcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHHh
Confidence            578999999  99999 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy1834          91 RKNPKD   96 (101)
Q Consensus        91 rK~p~d   96 (101)
                      ||+|..
T Consensus        81 ~KaG~~   86 (93)
T 3cx5_H           81 SKAGRE   86 (93)
T ss_dssp             SGGGHH
T ss_pred             cccchh
Confidence            999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	101
d1ppjg_	75	f.23.13.1 (G:) Ubiquinone-binding protein QP-C of	5e-23
d3cx5h1	93	f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C	4e-20

>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]} Length = 75

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.0 bits (203), Expect = 5e-23
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 21 HGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIIT 80
            FG+L   +R+++ + +S FEQRAF    + G+ N LRR      R  P F+  Y++ T
Sbjct: 2  RQFGHLTR-VRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYT 60

Query: 81 QTNDYYAQLNRKNP 94
               + +  RKNP
Sbjct: 61 WGTQEFEKSKRKNP 74

>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.5 bits (186), Expect = 4e-20
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 22 GFGNLG-PHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIIT 80
           +G++G P  + I  + +S + Q+   G+ +  + N+ RR        +    I +    
Sbjct: 11 WWGHMGGPKQKGITSYAVSPYAQKPLQGIFHNAVFNSFRRFKSQFLYVLIPAGIYWYWWK 70

Query: 81 QTNDYYAQLNRK 92
            N+Y   L  K
Sbjct: 71 NGNEYNEFLYSK 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	101
d3cx5h1	93	Ubiquinone-binding protein QP-C of cytochrome bc1	100.0
d1ppjg_	75	Ubiquinone-binding protein QP-C of cytochrome bc1	100.0

>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-45  Score=246.42  Aligned_cols=84  Identities=21%  Similarity=0.360  Sum_probs=80.5

Q ss_pred             ccCCCCCcccCCCCCCCCC-ceeeeEEEEEcCccchhhhccccchhhhhhHhhhhcccCeeehhhheehhhhhhcHHHHH
Q psy1834           9 IPIGKESSTMGHHGFGNLG-PHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQTNDYYA   87 (101)
Q Consensus         9 ~p~~k~~~~mG~~~fG~l~-~k~rgivtYsLSP~eQra~aG~~~~~i~N~~RR~~~q~~~~~ppfi~~Y~iy~Wa~~~~~   87 (101)
                      +|.  +++||||  ||||| ||||||+||||||||||||||+|++||||++||+++|+||++|||+++|++|+||+++||
T Consensus         2 ~p~--~~~y~g~--wG~lg~pk~rgIitYsLSPfeQrafag~~~~~ifN~~RR~r~q~lyv~PPfi~~Y~iy~Wa~~~ne   77 (93)
T d3cx5h1           2 PPS--GKTYMGW--WGHMGGPKQKGITSYAVSPYAQKPLQGIFHNAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNE   77 (93)
T ss_dssp             CCC--CCCSCCB--TTBCSCCCCCSEEEEEECGGGBCCSCCSTTTTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC--CCceecc--CcccCCCcccceEEEEeChhhcccccchHHhcccHHHHhhhhhceEEcchHHHHHHHHHHHHHHHH
Confidence            355  6799999  99999 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCCC
Q psy1834          88 QLNRKNPKD   96 (101)
Q Consensus        88 ~~~rK~p~d   96 (101)
                      +++||+|..
T Consensus        78 ~l~sK~Gr~   86 (93)
T d3cx5h1          78 FLYSKAGRE   86 (93)
T ss_dssp             HHTSGGGHH
T ss_pred             HHHcccCHH
Confidence            999999863

>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-44  Score=234.68  Aligned_cols=75  Identities=35%  Similarity=0.613  Sum_probs=72.2

Q ss_pred             CCCCCCCCCceeeeEEEEEcCccchhhhccccchhhhhhHhhhhcccCeeehhhheehhhhhhcHHHHHHhhCCCCC
Q psy1834          19 GHHGFGNLGPHIRNIVYHRISMFEQRAFAGLLNPGLQNTLRRITESAPRTVPYFLITYVIITQTNDYYAQLNRKNPK   95 (101)
Q Consensus        19 G~~~fG~l~~k~rgivtYsLSP~eQra~aG~~~~~i~N~~RR~~~q~~~~~ppfi~~Y~iy~Wa~~~~~~~~rK~p~   95 (101)
                      |+ |||||+ |||||+||||||||||||+|+|++||||++||+++|++|++||||++|++|+||+++||+++|||||
T Consensus         1 g~-~fG~L~-k~rgiitYsLSPfeQrafag~~~~gi~N~~RR~~~~~l~v~PPfi~~Y~iy~W~~~~~~~~~rKnPa   75 (75)
T d1ppjg_           1 GR-QFGHLT-RVRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKNPA   75 (75)
T ss_dssp             -C-CTTSSC-CCEEEEEEEECGGGBCSSTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC-
T ss_pred             CC-ccccce-eeccEEEEEeChhhhhhhcchHHhcccHHHHHhHHhceEEcCHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            44 899999 9999999999999999999999999999999999999999999999999999999999999999997