Psyllid ID: psy1859

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD
Secondary Structure (PSIPRED)
ccccEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEcccccHHHHcEEEEEEEEEcccccccEEEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccccEEEEEEccccEEEEEEccccEEEEccccccEEEEEEcccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccEEEcccccEEEEEEEEcccccEEEEEEEccEEEEEEEcccHHHHccccEEEEEEccccccEEEEEccHEccccccccEEEcccccEEEEccHHHHHHHHccccccccHHHEEcccccEEEEEEEccccccccccccccccEEEEEEccEEEEEEccc
Coil and Loop (DISEMBL)
MGYIMQRRESSLKFQTRCIkcfpnkqgyvlSSIEGRAAveyldtgpemQKMKYAFKCHRikedgiekiypvnaisfhqeyntfatggsdgyvniWDGFnkkrlcqfhrydtgitslfhqeyntfatggsdgyvniWDGFnkkrlcqfhrydtgitslcfsyd
Flexible Loop (DISEMBL)
mgyimqrresslkfqTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCqfhrydtgitslcfsyd
Low Complexity Region (SEG)
MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD
Disordered region (IsUnstruct)
***********LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS**
Disordered Region (DISOPRED)
****MQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD
Disordered Region (DISEMBL)
MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD
Disordered Region (DISPRO)
**YIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q9WVA3	326	Mitotic checkpoint protei	yes	N/A	0.796	0.395	0.753	4e-54
Q1JQB2	326	Mitotic checkpoint protei	yes	N/A	0.796	0.395	0.753	4e-54
O43684	328	Mitotic checkpoint protei	yes	N/A	0.796	0.393	0.753	5e-54
Q9YGY3	330	Mitotic checkpoint protei	N/A	N/A	0.796	0.390	0.738	7e-53
Q5RB58	328	Mitotic checkpoint protei	yes	N/A	0.796	0.393	0.746	1e-52
Q54DM1	331	Mitotic checkpoint protei	yes	N/A	0.771	0.377	0.515	2e-33
Q38942	349	Rae1-like protein At1g806	no	N/A	0.703	0.326	0.429	1e-20
O42860	320	Mitotic checkpoint protei	yes	N/A	0.685	0.346	0.432	4e-20
P40066	365	Nucleoporin GLE2 OS=Sacch	yes	N/A	0.604	0.268	0.425	3e-18
P41838	352	Poly(A)+ RNA export prote	no	N/A	0.740	0.340	0.373	5e-17

>sp|Q9WVA3|BUB3_MOUSE Mitotic checkpoint protein BUB3 OS=Mus musculus GN=Bub3 PE=2 SV=2

 Score =  209 bits (533), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 98/130 (75%), Positives = 108/130 (83%), Gaps = 1/130 (0%)

Query: 1   MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
           MGY+ QRRESSLK+QTRCI+ FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+
Sbjct: 167 MGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRL 226

Query: 61  KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ 119
           KE+ IE+IYPVNAISFH  +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL F  
Sbjct: 227 KENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSN 286

Query: 120 EYNTFATGGS 129
           +  T A   S
Sbjct: 287 DGTTLAIASS 296

Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Promotes the formation of stable end-on bipolar attachments. Necessary for kinetochore localization of BUB1. The BUB1/BUB3 complex plays a role in the inhibition of anaphase-promoting complex or cyclosome (APC/C) when spindle-assembly checkpoint is activated and inhibits the ubiquitin ligase activity of APC/C by phosphorylating its activator CDC20. This complex can also phosphorylate MAD1L1 (By similarity). Regulates chromosome segregation during oocyte meiosis.
Mus musculus (taxid: 10090)

>sp|Q1JQB2|BUB3_BOVIN Mitotic checkpoint protein BUB3 OS=Bos taurus GN=BUB3 PE=2 SV=1

 Score =  209 bits (533), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 98/130 (75%), Positives = 108/130 (83%), Gaps = 1/130 (0%)

Query: 1   MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
           MGY+ QRRESSLK+QTRCI+ FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+
Sbjct: 167 MGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRL 226

Query: 61  KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ 119
           KE+ IE+IYPVNAISFH  +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL F  
Sbjct: 227 KENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSN 286

Query: 120 EYNTFATGGS 129
           +  T A   S
Sbjct: 287 DGTTLAIASS 296

Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Promotes the formation of stable end-on bipolar attachments. Necessary for kinetochore localization of BUB1. Regulates chromosome segregation during oocyte meiosis. The BUB1/BUB3 complex plays a role in the inhibition of anaphase-promoting complex or cyclosome (APC/C) when spindle-assembly checkpoint is activated and inhibits the ubiquitin ligase activity of APC/C by phosphorylating its activator CDC20. This complex can also phosphorylate MAD1L1.

Bos taurus (taxid: 9913)

>sp|O43684|BUB3_HUMAN Mitotic checkpoint protein BUB3 OS=Homo sapiens GN=BUB3 PE=1 SV=1

 Score =  209 bits (532), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 98/130 (75%), Positives = 108/130 (83%), Gaps = 1/130 (0%)

Query: 1   MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
           MGY+ QRRESSLK+QTRCI+ FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+
Sbjct: 167 MGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRL 226

Query: 61  KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ 119
           KE+ IE+IYPVNAISFH  +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL F  
Sbjct: 227 KENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSN 286

Query: 120 EYNTFATGGS 129
           +  T A   S
Sbjct: 287 DGTTLAIASS 296

Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Promotes the formation of stable end-on bipolar attachments. Necessary for kinetochore localization of BUB1. Regulates chromosome segregation during oocyte meiosis. The BUB1/BUB3 complex plays a role in the inhibition of anaphase-promoting complex or cyclosome (APC/C) when spindle-assembly checkpoint is activated and inhibits the ubiquitin ligase activity of APC/C by phosphorylating its activator CDC20. This complex can also phosphorylate MAD1L1.

Homo sapiens (taxid: 9606)

>sp|Q9YGY3|BUB3_XENLA Mitotic checkpoint protein BUB3 OS=Xenopus laevis GN=bub3 PE=1 SV=1

 Score =  206 bits (523), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 96/130 (73%), Positives = 108/130 (83%), Gaps = 1/130 (0%)

Query: 1   MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
           MGY+ QRRESSLK+QTRCI+ FPNKQGYVLSSIEGR AVEYLD   E+QK KYAFKCHR+
Sbjct: 173 MGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSLEVQKKKYAFKCHRL 232

Query: 61  KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ 119
           KE+ IE+IYPVNA+SFH  +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL F  
Sbjct: 233 KENNIEQIYPVNAVSFHNLHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSN 292

Query: 120 EYNTFATGGS 129
           + +T A   S
Sbjct: 293 DGSTLAIAAS 302

Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Plays a role in the kinetochore-mediated mitotic checkpoint, which delays anaphase onset until all chromosomes have attached properly to the mitotic spindle. Required to establish and maintain spindle checkpoint arrest in eggs.

Xenopus laevis (taxid: 8355)

>sp|Q5RB58|BUB3_PONAB Mitotic checkpoint protein BUB3 OS=Pongo abelii GN=BUB3 PE=2 SV=1

 Score =  204 bits (520), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 97/130 (74%), Positives = 107/130 (82%), Gaps = 1/130 (0%)

Query: 1   MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
           MGY+ QRRESSLK+QTRCI+ F NKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+
Sbjct: 167 MGYVQQRRESSLKYQTRCIRAFLNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRL 226

Query: 61  KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ 119
           KE+ IE+IYPVNAISFH  +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL F  
Sbjct: 227 KENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSN 286

Query: 120 EYNTFATGGS 129
           +  T A   S
Sbjct: 287 DGTTLAIASS 296

Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Promotes the formation of stable end-on bipolar attachments. Necessary for kinetochore localization of BUB1. Regulates chromosome segregation during oocyte meiosis. The BUB1/BUB3 complex plays a role in the inhibition of anaphase-promoting complex or cyclosome (APC/C) when spindle-assembly checkpoint is activated and inhibits the ubiquitin ligase activity of APC/C by phosphorylating its activator CDC20. This complex can also phosphorylate MAD1L1.

Pongo abelii (taxid: 9601)

>sp|Q54DM1|BUB3_DICDI Mitotic checkpoint protein bub3 OS=Dictyostelium discoideum GN=bub3 PE=3 SV=1

 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 87/126 (69%), Gaps = 1/126 (0%)

Query: 5   MQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDG 64
           +Q+RESS+K+QTRCI+ F + +GY L+S+EGR A+EY D  P +Q  KYAFKCHR+ E G
Sbjct: 176 LQKRESSIKYQTRCIRTFTDGKGYALASVEGRIAMEYFDPSPAVQSKKYAFKCHRLTESG 235

Query: 65  IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNT 123
           ++ +YPVN I+F+  Y TFATGG D  V  WDG N+KRL     Y T I+S+ F+ + N 
Sbjct: 236 VDVVYPVNCIAFNPHYGTFATGGCDKNVFFWDGANRKRLHALKTYPTSISSMSFNTDGNI 295

Query: 124 FATGGS 129
            A   S
Sbjct: 296 LAVASS 301

Involved in cell cycle checkpoint enforcement.

Dictyostelium discoideum (taxid: 44689)

>sp|Q38942|RAE1L_ARATH Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670 PE=2 SV=2

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 74/121 (61%), Gaps = 7/121 (5%)

Query: 6   QRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGI 65
           +R +S LK+QTRC+  FP++QG+++ SIEGR  V +LD     Q   + FKCHR   D  
Sbjct: 190 KRIQSPLKYQTRCVTAFPDQQGFLVGSIEGRVGVHHLDD--SQQSKNFTFKCHRDGND-- 245

Query: 66  EKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGIT-SLFHQEYNTF 124
             IY VN+++FH  + TFAT GSDG  N WD  +K+RL    R +  I  S F+ + + +
Sbjct: 246 --IYSVNSLNFHPVHGTFATAGSDGAFNFWDKDSKQRLKAMSRCNQPIPCSSFNHDGSIY 303

Query: 125 A 125
           A
Sbjct: 304 A 304

Arabidopsis thaliana (taxid: 3702)

>sp|O42860|BUB3_SCHPO Mitotic checkpoint protein bub3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bub3 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 65/111 (58%)

Query: 6   QRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGI 65
           QRR SS K+ TR + C  N +G+V SSIEGR +VEY++   E Q   + FKCHR  +   
Sbjct: 171 QRRPSSFKYMTRSVCCNQNFEGFVSSSIEGRTSVEYINPSQEAQSKNFTFKCHRQIQKDY 230

Query: 66  EKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL 116
           + +YPVN + FH  + T AT G DG V  WD   +KRL   +     I+S+
Sbjct: 231 DIVYPVNDLKFHPIHQTLATAGGDGVVAFWDIQVRKRLRVLNPSKINISSI 281

Involved in cell cycle checkpoint enforcement. Involved in recruitment of checkpoint proteins bub1 and mad3 to the kinetochores, ensuring correct spindle checkpoint function.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P40066|GLE2_YEAST Nucleoporin GLE2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GLE2 PE=1 SV=1

 Score = 91.3 bits (225), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 10/108 (9%)

Query: 4   IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMK-YAFKCHR--- 59
           I +   S LK+QTRC+ C+    GY + S+EGR ++ Y+D G  MQK   ++FKCHR   
Sbjct: 199 IFKATTSPLKWQTRCVACYNEADGYAIGSVEGRCSIRYIDDG--MQKKSGFSFKCHRQTN 256

Query: 60  ----IKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRL 103
                  +G   +YPVN+I+FH  Y TF T G DG  N WD   + RL
Sbjct: 257 PNRAPGSNGQSLVYPVNSIAFHPLYGTFVTAGGDGTFNFWDKNQRHRL 304

Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. It is specifically important for nuclear mRNA export.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P41838|RAE1_SCHPO Poly(A)+ RNA export protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rae1 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 3/123 (2%)

Query: 4   IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKED 63
           I +   S LKFQTR + CF    GY + S+EGR A++ +D     Q   ++F+CHR +  
Sbjct: 192 IFKLAMSPLKFQTRSLACFIKGDGYAIGSVEGRCAIQNIDEKNASQN--FSFRCHRNQAG 249

Query: 64  GIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGIT-SLFHQEYN 122
               +Y VN+I+FH +Y TF+T GSDG  + WD  + +RL  +      I+ S F++  +
Sbjct: 250 NSADVYSVNSIAFHPQYGTFSTAGSDGTFSFWDKDSHQRLKSYPNVGGTISCSTFNRTGD 309

Query: 123 TFA 125
            FA
Sbjct: 310 IFA 312

Required for mitotic cell growth as well as for spore germination. Functions in cell cycle progression through trafficking of proteins required for mitosis. Has a role in the mRNA export process.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
193643642	328	PREDICTED: mitotic checkpoint protein BU	0.790	0.390	0.798	9e-55
187610693	326	mitotic checkpoint protein [Penaeus mono	0.796	0.395	0.792	9e-55
444729277	600	Mitotic checkpoint protein BUB3 [Tupaia	0.814	0.22	0.744	2e-54
405953484	326	Mitotic checkpoint protein BUB3 [Crassos	0.827	0.411	0.748	4e-54
431908251	626	Mitotic checkpoint protein BUB3 [Pteropu	0.814	0.210	0.744	5e-54
242021567	340	mitotic checkpoint protein BUB3, putativ	0.716	0.341	0.844	7e-54
260826716	334	hypothetical protein BRAFLDRAFT_125481 [	0.796	0.386	0.769	1e-53
357631281	329	putative BUB3 budding uninhibited by ben	0.716	0.352	0.827	2e-53
91091890	331	PREDICTED: similar to BUB3 budding uninh	0.716	0.350	0.827	6e-53
449506079	329	PREDICTED: mitotic checkpoint protein BU	0.796	0.392	0.753	1e-52

>gi|193643642|ref|XP_001947199.1| PREDICTED: mitotic checkpoint protein BUB3-like [Acyrthosiphon pisum]

 Score =  218 bits (554), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 103/129 (79%), Positives = 113/129 (87%), Gaps = 1/129 (0%)

Query: 2   GYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIK 61
            YIMQRRES+LKFQTRCI+C PNKQGYVLSSIEGR AVEY DT PE+QK KYAFKCHRIK
Sbjct: 170 AYIMQRRESNLKFQTRCIRCSPNKQGYVLSSIEGRVAVEYFDTAPEIQKKKYAFKCHRIK 229

Query: 62  EDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQE 120
           ++ IE IYPVNAISFHQ +NTFATGGSDGYVNIWDGFNKKRLCQFHRY+TGITSL F  +
Sbjct: 230 DNDIECIYPVNAISFHQVFNTFATGGSDGYVNIWDGFNKKRLCQFHRYNTGITSLCFSHD 289

Query: 121 YNTFATGGS 129
            ++ A G S
Sbjct: 290 GSSLAIGSS 298

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|187610693|gb|ACD13595.1| mitotic checkpoint protein [Penaeus monodon]

 Score =  218 bits (554), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 103/130 (79%), Positives = 112/130 (86%), Gaps = 1/130 (0%)

Query: 1   MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
           MG+  QRRESSLK+QTRCI+CFPNKQGYV+SSIEGR AVEYLD  PE+QK KYAFKCHR+
Sbjct: 168 MGFAQQRRESSLKYQTRCIQCFPNKQGYVVSSIEGRVAVEYLDPSPEVQKKKYAFKCHRL 227

Query: 61  KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ 119
           KEDGIEKI+PVNAISFH  YNTFATGGSDGYVNIWDGFNKKRLCQFHRY T I+SL F  
Sbjct: 228 KEDGIEKIFPVNAISFHNGYNTFATGGSDGYVNIWDGFNKKRLCQFHRYPTSISSLCFSN 287

Query: 120 EYNTFATGGS 129
           + NT A   S
Sbjct: 288 DGNTLAIACS 297

Source: Penaeus monodon

Species: Penaeus monodon

Genus: Penaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|444729277|gb|ELW69702.1| Mitotic checkpoint protein BUB3 [Tupaia chinensis]

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 99/133 (74%), Positives = 109/133 (81%), Gaps = 1/133 (0%)

Query: 1   MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
           MGY+ QRRESSLK+QTRCI+ FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+
Sbjct: 407 MGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRL 466

Query: 61  KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ 119
           KE+ IE+IYPVNAISFH  +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL F  
Sbjct: 467 KENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSN 526

Query: 120 EYNTFATGGSDGY 132
           +  T A   S  Y
Sbjct: 527 DGTTLAIASSYMY 539

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|405953484|gb|EKC21138.1| Mitotic checkpoint protein BUB3 [Crassostrea gigas]

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 101/135 (74%), Positives = 112/135 (82%), Gaps = 1/135 (0%)

Query: 1   MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
           MGY+ QRRESSLK+QTRCI+CFPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHRI
Sbjct: 167 MGYVQQRRESSLKYQTRCIRCFPNKQGYVLSSIEGRVAVEYLDPSPEVQKRKYAFKCHRI 226

Query: 61  KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ 119
           KE+G+EKIYPVNAI+FH  +NTFA+GGSDG+VNIWDGFNKKRLCQFHRY  GI SL F  
Sbjct: 227 KENGVEKIYPVNAIAFHTHHNTFASGGSDGFVNIWDGFNKKRLCQFHRYPAGIASLAFSP 286

Query: 120 EYNTFATGGSDGYVN 134
           +    A   S  Y N
Sbjct: 287 DGAVLAIASSYMYEN 301

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|431908251|gb|ELK11851.1| Mitotic checkpoint protein BUB3 [Pteropus alecto]

 Score =  215 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 99/133 (74%), Positives = 109/133 (81%), Gaps = 1/133 (0%)

Query: 1   MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
           MGY+ QRRESSLK+QTRCI+ FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+
Sbjct: 406 MGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRL 465

Query: 61  KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ 119
           KE+ IE+IYPVNAISFH  +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL F  
Sbjct: 466 KENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSN 525

Query: 120 EYNTFATGGSDGY 132
           +  T A   S  Y
Sbjct: 526 DGTTLAIASSYMY 538

Source: Pteropus alecto

Species: Pteropus alecto

Genus: Pteropus

Family: Pteropodidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|242021567|ref|XP_002431216.1| mitotic checkpoint protein BUB3, putative [Pediculus humanus corporis] gi|212516465|gb|EEB18478.1| mitotic checkpoint protein BUB3, putative [Pediculus humanus corporis]

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 98/116 (84%), Positives = 104/116 (89%)

Query: 1   MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
           MG+  QRRESSLK+QTRCI+CFPNKQGY LSSIEGR AVEYLDT PE+QK KYAFKCHRI
Sbjct: 181 MGFASQRRESSLKYQTRCIRCFPNKQGYALSSIEGRVAVEYLDTNPEIQKKKYAFKCHRI 240

Query: 61  KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL 116
           KE+GIE IYPVNAISFHQ YNTFATGGSDGYVNIWDGFNKKRLCQFH+Y   I SL
Sbjct: 241 KENGIEHIYPVNAISFHQGYNTFATGGSDGYVNIWDGFNKKRLCQFHKYSNSIASL 296

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260826716|ref|XP_002608311.1| hypothetical protein BRAFLDRAFT_125481 [Branchiostoma floridae] gi|229293662|gb|EEN64321.1| hypothetical protein BRAFLDRAFT_125481 [Branchiostoma floridae]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 100/130 (76%), Positives = 110/130 (84%), Gaps = 1/130 (0%)

Query: 1   MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
           MGY+ QRRESSLK+QTRCI+ FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHRI
Sbjct: 171 MGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRI 230

Query: 61  KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ 119
           KEDGIEKIYPVNAI+FH  +NTFATGGSDG+VNIWDGF+KKRLCQFHRY T I SL F  
Sbjct: 231 KEDGIEKIYPVNAIAFHSMHNTFATGGSDGFVNIWDGFHKKRLCQFHRYPTSIASLAFSH 290

Query: 120 EYNTFATGGS 129
           + +  A   S
Sbjct: 291 DGSVLAIASS 300

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|357631281|gb|EHJ78871.1| putative BUB3 budding uninhibited by benzimidazoles 3 [Danaus plexippus]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 96/116 (82%), Positives = 107/116 (92%)

Query: 1   MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
           MG++ QRRESSLK+QTRCI+ FPNKQGYVLSSIEGR AVEYLD+ PE+QK KYAFKCHRI
Sbjct: 174 MGHVNQRRESSLKYQTRCIRVFPNKQGYVLSSIEGRVAVEYLDSNPEVQKKKYAFKCHRI 233

Query: 61  KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL 116
           K+ G+EKIYPVNAISFH  YNTFATGGSDGYVNIWDGFNKKRLCQFHRY+T ++SL
Sbjct: 234 KDGGLEKIYPVNAISFHSVYNTFATGGSDGYVNIWDGFNKKRLCQFHRYNTAVSSL 289

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091890|ref|XP_970295.1| PREDICTED: similar to BUB3 budding uninhibited by benzimidazoles 3 [Tribolium castaneum] gi|270001257|gb|EEZ97704.1| budding uninhibited by benzimidazoles 3 [Tribolium castaneum]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 96/116 (82%), Positives = 106/116 (91%)

Query: 1   MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
           M Y +Q+RES+LK+QTR I+CFPNKQG+VLSSIEGR AVEYLDT PE+QK KYAFKCHRI
Sbjct: 167 MSYTLQKRESNLKYQTRAIRCFPNKQGFVLSSIEGRVAVEYLDTNPEIQKKKYAFKCHRI 226

Query: 61  KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL 116
           KEDG+EKIYPVNAISFH  +NTFATGGSDGYVNIWDGFNKKRLCQFH+Y T ITSL
Sbjct: 227 KEDGMEKIYPVNAISFHPTHNTFATGGSDGYVNIWDGFNKKRLCQFHQYHTSITSL 282

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449506079|ref|XP_002192609.2| PREDICTED: mitotic checkpoint protein BUB3 [Taeniopygia guttata]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/130 (75%), Positives = 108/130 (83%), Gaps = 1/130 (0%)

Query: 1   MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
           MGY+ QRRESSLK+QTRCI+ FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+
Sbjct: 170 MGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEIQKKKYAFKCHRL 229

Query: 61  KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ 119
           KE+ IE+IYPVNAISFH  +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL F  
Sbjct: 230 KENNIEQIYPVNAISFHNVHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSN 289

Query: 120 EYNTFATGGS 129
           +  T A   S
Sbjct: 290 DGTTLAIASS 299

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
UNIPROTKB|Q5ZHW3	329	BUB3 "Uncharacterized protein"	0.814	0.401	0.744	1.1e-50
UNIPROTKB|Q1JQB2	326	BUB3 "Mitotic checkpoint prote	0.814	0.404	0.744	1.3e-50
UNIPROTKB|B4DDM6	248	BUB3 "cDNA FLJ57899, highly si	0.814	0.532	0.744	1.3e-50
UNIPROTKB|O43684	328	BUB3 "Mitotic checkpoint prote	0.814	0.402	0.744	1.3e-50
UNIPROTKB|F2Z5F3	328	BUB3 "Uncharacterized protein"	0.814	0.402	0.744	1.3e-50
MGI|MGI:1343463	326	Bub3 "budding uninhibited by b	0.814	0.404	0.744	1.3e-50
UNIPROTKB|Q5RB58	328	BUB3 "Mitotic checkpoint prote	0.814	0.402	0.736	1.5e-49
ZFIN|ZDB-GENE-041010-210	326	bub3 "BUB3 budding uninhibited	0.759	0.377	0.744	3.2e-49
UNIPROTKB|J3QT28	278	BUB3 "Mitotic checkpoint prote	0.685	0.399	0.819	1.8e-48
UNIPROTKB|E1C9E5	258	BUB3 "Uncharacterized protein"	0.567	0.356	0.804	5.5e-38

UNIPROTKB|Q5ZHW3 BUB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 99/133 (74%), Positives = 109/133 (81%)

Query:     1 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
             MGY+ QRRESSLK+QTRCI+ FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+
Sbjct:   170 MGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEIQKKKYAFKCHRL 229

Query:    61 KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ 119
             KE+ IE+IYPVNAISFH  +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL F  
Sbjct:   230 KENNIEQIYPVNAISFHNVHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSN 289

Query:   120 EYNTFATGGSDGY 132
             +  T A   S  Y
Sbjct:   290 DGTTLAIASSYMY 302

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IEA

GO:0051983 "regulation of chromosome segregation" evidence=IEA

GO:0071173 "spindle assembly checkpoint" evidence=IEA

UNIPROTKB|Q1JQB2 BUB3 "Mitotic checkpoint protein BUB3" [Bos taurus (taxid:9913)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 99/133 (74%), Positives = 109/133 (81%)

Query:     1 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
             MGY+ QRRESSLK+QTRCI+ FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+
Sbjct:   167 MGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRL 226

Query:    61 KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ 119
             KE+ IE+IYPVNAISFH  +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL F  
Sbjct:   227 KENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSN 286

Query:   120 EYNTFATGGSDGY 132
             +  T A   S  Y
Sbjct:   287 DGTTLAIASSYMY 299

GO:0051983 "regulation of chromosome segregation" evidence=ISS

GO:0071173 "spindle assembly checkpoint" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IEA

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007126 "meiosis" evidence=IEA

UNIPROTKB|B4DDM6 BUB3 "cDNA FLJ57899, highly similar to Mitotic checkpoint protein BUB3" [Homo sapiens (taxid:9606)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 99/133 (74%), Positives = 109/133 (81%)

Query:     1 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
             MGY+ QRRESSLK+QTRCI+ FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+
Sbjct:    87 MGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRL 146

Query:    61 KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ 119
             KE+ IE+IYPVNAISFH  +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL F  
Sbjct:   147 KENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSN 206

Query:   120 EYNTFATGGSDGY 132
             +  T A   S  Y
Sbjct:   207 DGTTLAIASSYMY 219

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0051983 "regulation of chromosome segregation" evidence=IEA

GO:0071173 "spindle assembly checkpoint" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|O43684 BUB3 "Mitotic checkpoint protein BUB3" [Homo sapiens (taxid:9606)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 99/133 (74%), Positives = 109/133 (81%)

Query:     1 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
             MGY+ QRRESSLK+QTRCI+ FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+
Sbjct:   167 MGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRL 226

Query:    61 KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ 119
             KE+ IE+IYPVNAISFH  +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL F  
Sbjct:   227 KENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSN 286

Query:   120 EYNTFATGGSDGY 132
             +  T A   S  Y
Sbjct:   287 DGTTLAIASSYMY 299

GO:0007126 "meiosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0051983 "regulation of chromosome segregation" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0071173 "spindle assembly checkpoint" evidence=IDA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F2Z5F3 BUB3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 99/133 (74%), Positives = 109/133 (81%)

Query:     1 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
             MGY+ QRRESSLK+QTRCI+ FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+
Sbjct:   167 MGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRL 226

Query:    61 KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ 119
             KE+ IE+IYPVNAISFH  +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL F  
Sbjct:   227 KENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSN 286

Query:   120 EYNTFATGGSDGY 132
             +  T A   S  Y
Sbjct:   287 DGTTLAIASSYMY 299

GO:0071173 "spindle assembly checkpoint" evidence=IEA

GO:0051983 "regulation of chromosome segregation" evidence=IEA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

MGI|MGI:1343463 Bub3 "budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 99/133 (74%), Positives = 109/133 (81%)

Query:     1 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
             MGY+ QRRESSLK+QTRCI+ FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+
Sbjct:   167 MGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRL 226

Query:    61 KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ 119
             KE+ IE+IYPVNAISFH  +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL F  
Sbjct:   227 KENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSN 286

Query:   120 EYNTFATGGSDGY 132
             +  T A   S  Y
Sbjct:   287 DGTTLAIASSYMY 299

GO:0000070 "mitotic sister chromatid segregation" evidence=IMP

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000776 "kinetochore" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IMP

GO:0007067 "mitosis" evidence=IEA

GO:0007126 "meiosis" evidence=IEA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=ISO

GO:0051301 "cell division" evidence=IEA

GO:0051983 "regulation of chromosome segregation" evidence=IDA

GO:0071173 "spindle assembly checkpoint" evidence=ISO;IDA

UNIPROTKB|Q5RB58 BUB3 "Mitotic checkpoint protein BUB3" [Pongo abelii (taxid:9601)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 98/133 (73%), Positives = 108/133 (81%)

Query:     1 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
             MGY+ QRRESSLK+QTRCI+ F NKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+
Sbjct:   167 MGYVQQRRESSLKYQTRCIRAFLNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRL 226

Query:    61 KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ 119
             KE+ IE+IYPVNAISFH  +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL F  
Sbjct:   227 KENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSN 286

Query:   120 EYNTFATGGSDGY 132
             +  T A   S  Y
Sbjct:   287 DGTTLAIASSYMY 299

GO:0051983 "regulation of chromosome segregation" evidence=ISS

GO:0071173 "spindle assembly checkpoint" evidence=ISS

ZFIN|ZDB-GENE-041010-210 bub3 "BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 96/129 (74%), Positives = 109/129 (84%)

Query:     1 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
             MGY+ QRRESSLK+QTRCI+ FPNKQGYVLSSIEGR AVEYLD   E+QK KYAFKCHR+
Sbjct:   167 MGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSLEVQKKKYAFKCHRL 226

Query:    61 KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQE 120
             KE+GIE++YPVNAISFH  +NTFATGGSDG+VNIWD FNKKRLCQFHRY + I SL    
Sbjct:   227 KENGIEQVYPVNAISFHSVHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPSSIASL---- 282

Query:   121 YNTFATGGS 129
               +F+T GS
Sbjct:   283 --SFSTDGS 289

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|J3QT28 BUB3 "Mitotic checkpoint protein BUB3" [Homo sapiens (taxid:9606)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 91/111 (81%), Positives = 100/111 (90%)

Query:     1 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
             MGY+ QRRESSLK+QTRCI+ FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+
Sbjct:   167 MGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRL 226

Query:    61 KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT 111
             KE+ IE+IYPVNAISFH  +NTFATGGSDG+VNIWD FNKKRLCQFHRY T
Sbjct:   227 KENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPT 277

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0051983 "regulation of chromosome segregation" evidence=IEA

GO:0071173 "spindle assembly checkpoint" evidence=IEA

UNIPROTKB|E1C9E5 BUB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 74/92 (80%), Positives = 83/92 (90%)

Query:     1 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
             MGY+ QRRESSLK+QTRCI+ FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+
Sbjct:   167 MGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEIQKKKYAFKCHRL 226

Query:    61 KEDGIEKIYPVNAISFHQEYNTFATGGSDGYV 92
             KE+ IE+IYPVNAISFH  +NTFATGGSDG+V
Sbjct:   227 KENNIEQIYPVNAISFHNVHNTFATGGSDGFV 258

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IEA

GO:0051983 "regulation of chromosome segregation" evidence=IEA

GO:0071173 "spindle assembly checkpoint" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9WVA3	BUB3_MOUSE	No assigned EC number	0.7538	0.7962	0.3957	yes	N/A
O43684	BUB3_HUMAN	No assigned EC number	0.7538	0.7962	0.3932	yes	N/A
Q1JQB2	BUB3_BOVIN	No assigned EC number	0.7538	0.7962	0.3957	yes	N/A
Q54DM1	BUB3_DICDI	No assigned EC number	0.5158	0.7716	0.3776	yes	N/A
Q5RB58	BUB3_PONAB	No assigned EC number	0.7461	0.7962	0.3932	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	162
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-05
smart00320	40	smart00320, WD40, WD40 repeats	9e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.003
smart00320	40	smart00320, WD40, WD40 repeats	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 1/94 (1%)

Query: 70  PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGG 128
            VN+++F  +     +  SDG + +WD    K L     ++ G+ S+ F  +    A+G 
Sbjct: 179 EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS 238

Query: 129 SDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
            DG + +WD    + +     +   +TSL +S D
Sbjct: 239 EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD 272

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 14/122 (11%)

Query: 17  RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF 76
             +   P+ +  + SS +G   +  L TG    K     + H            VN+++F
Sbjct: 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTG----KCLGTLRGHE---------NGVNSVAF 227

Query: 77  HQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNI 135
             +    A+G  DG + +WD    + +     +   +TSL +  +    A+G +DG + I
Sbjct: 228 SPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287

Query: 136 WD 137
           WD
Sbjct: 288 WD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 70  PVNAISFHQEYNTFATGGSDGYVNIWDG--FNKKRLCQFHRYDTGITSLFHQEYNTFATG 127
            V++++F  +    ++   D  + +WD          + H     + S+      TF   
Sbjct: 95  YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT--DWVNSVAFSPDGTFVAS 152

Query: 128 GS-DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
            S DG + +WD    K +     +   + S+ FS D
Sbjct: 153 SSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD 188

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 70  PVNAISFHQEYNTFATGGSDGYVNIWD---GFNKKRLCQFHRYDTGITSLFHQEYNTFAT 126
            V  ++F  +    ATG  DG + +WD   G   + L         + +     Y   A+
Sbjct: 11  GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY--LAS 68

Query: 127 GGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS 160
           G SD  + +WD    + +     + + ++S+ FS
Sbjct: 69  GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS 102

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 70  PVNAISFHQEYNTFATGGS-DGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGG 128
           PV+++SF  + +   +GGS DG + +WD    K L     +   ++  F  +    ++G 
Sbjct: 330 PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGS 389

Query: 129 SDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
           +DG V +WD      L     + + +TSL FS D
Sbjct: 390 TDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPD 423

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.5 bits (114), Expect = 3e-07
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 70  PVNAISFHQE-YNTFATGGSDGYVNIWDGFNKKRLCQ-FHRYDTGITSLFHQEYNTFATG 127
           PV++++F  +     A+G SDG + +WD    K L      +   + S F  + +  A+G
Sbjct: 200 PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASG 259

Query: 128 GSDGYVNIWD-GFNKKRLCQFHRYDTGITSLCFSYD 162
            SDG + +WD   +   L     + + + S+ FS D
Sbjct: 260 SSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD 295

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 5/94 (5%)

Query: 70  PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGG 128
           PV  ++   +    A+G SD  + +WD    + +     + + ++S+ F  +    ++  
Sbjct: 53  PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS 112

Query: 129 SDGYVNIWDG--FNKKRLCQFHRYDTGITSLCFS 160
            D  + +WD          + H     + S+ FS
Sbjct: 113 RDKTIKVWDVETGKCLTTLRGHT--DWVNSVAFS 144

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 44.7 bits (104), Expect = 6e-06
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 3/96 (3%)

Query: 70  PVNAISFHQEYNTFATGGS-DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQE-YNTFAT 126
            V +++F  +    A+G S DG + +WD    K L     +   ++SL F  +     A+
Sbjct: 157 SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216

Query: 127 GGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
           G SDG + +WD    K L       +      FS D
Sbjct: 217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPD 252

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 16/146 (10%)

Query: 4   IMQRRESSLKFQTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE 62
           +        +     +   P+    V   S +G   +  L TG  ++             
Sbjct: 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT------------ 366

Query: 63  DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEY 121
             +E    V ++SF  +    ++G +DG V +WD      L     + + +TSL F  + 
Sbjct: 367 --LEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDG 424

Query: 122 NTFATGGSDGYVNIWDGFNKKRLCQF 147
            + A+G SD  + +WD     +   F
Sbjct: 425 KSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 70 PVNAISFHQEYNTFATGGSDGYVNIWD 96
          PV +++F  + N  A+G  DG V +WD
Sbjct: 13 PVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.7 bits (88), Expect = 9e-05
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 70 PVNAISFHQEYNTFATGGSDGYVNIWD 96
          PV +++F  +    A+G  DG + +WD
Sbjct: 14 PVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 7/98 (7%)

Query: 70  PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR----LCQFHRYDTGITSLFHQEYNTFA 125
            + +I+F  +     +G SDG + +WD  N ++    L   H       +L   + N+  
Sbjct: 67  SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSIL 126

Query: 126 TGGS--DGYVNIWD-GFNKKRLCQFHRYDTGITSLCFS 160
              S  DG V +WD     K +     +   +TSL FS
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS 164

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 33.5 bits (77), Expect = 0.003
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 112 GITSL-FHQEYNTFATGGSDGYVNIWD 137
            +TS+ F  + N  A+G  DG V +WD
Sbjct: 13  PVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 33.4 bits (77), Expect = 0.003
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 99  NKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWD 137
           + + L     +   +TS+ F  +    A+G  DG + +WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
KOG0271|consensus	480		99.97
KOG0272|consensus	459		99.97
KOG0263|consensus	707		99.97
KOG0272|consensus	459		99.96
KOG0271|consensus	480		99.95
KOG0284|consensus	464		99.95
KOG0266|consensus	456		99.95
KOG0279|consensus	315		99.95
KOG0284|consensus	464		99.94
KOG0266|consensus	456		99.94
KOG0279|consensus	315		99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0273|consensus	524		99.94
KOG0645|consensus	312		99.93
KOG0276|consensus	794		99.93
KOG0285|consensus	460		99.93
KOG0286|consensus	343		99.93
KOG0319|consensus	775		99.93
KOG0286|consensus	343		99.92
KOG0315|consensus	311		99.92
KOG0273|consensus	524		99.92
KOG0263|consensus	707		99.92
KOG0275|consensus	508		99.92
KOG0645|consensus	312		99.92
KOG0295|consensus	406		99.92
PTZ00420	568	coronin; Provisional	99.92
KOG0277|consensus	311		99.91
KOG0283|consensus	712		99.91
KOG0265|consensus	338		99.9
KOG0291|consensus	893		99.9
KOG0285|consensus	460		99.9
KOG0315|consensus	311		99.9
KOG0308|consensus	735		99.9
KOG0316|consensus	307		99.89
KOG0292|consensus	1202		99.89
KOG0282|consensus	503		99.89
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.89
KOG0302|consensus	440		99.89
KOG0264|consensus	422		99.88
KOG0772|consensus	641		99.88
KOG0289|consensus	506		99.88
KOG0641|consensus	350		99.88
KOG0319|consensus	775		99.88
KOG0973|consensus	942		99.88
KOG0306|consensus	888		99.88
KOG0647|consensus	347		99.87
KOG0295|consensus	406		99.87
KOG0318|consensus	603		99.87
KOG0292|consensus	1202		99.87
KOG0275|consensus	508		99.87
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.86
PLN00181	793	protein SPA1-RELATED; Provisional	99.86
KOG0293|consensus	519		99.86
KOG0318|consensus	603		99.86
KOG0277|consensus	311		99.86
KOG0269|consensus	839		99.86
KOG1446|consensus	311		99.86
PTZ00421	493	coronin; Provisional	99.86
KOG1407|consensus	313		99.86
KOG1407|consensus	313		99.86
KOG0305|consensus	484		99.86
KOG0973|consensus	942		99.85
KOG0296|consensus	399		99.85
KOG0306|consensus	888		99.85
KOG0267|consensus	825		99.85
KOG0302|consensus	440		99.85
KOG0772|consensus	641		99.85
KOG0296|consensus	399		99.85
KOG0264|consensus	422		99.85
KOG0640|consensus	430		99.85
KOG0291|consensus	893		99.85
KOG0310|consensus	487		99.84
KOG1036|consensus	323		99.84
KOG1009|consensus	434		99.84
PLN00181	793	protein SPA1-RELATED; Provisional	99.84
KOG0276|consensus	794		99.84
KOG0313|consensus	423		99.83
KOG0281|consensus	499		99.83
KOG0640|consensus	430		99.83
PTZ00420	568	coronin; Provisional	99.82
KOG0639|consensus	705		99.82
KOG4283|consensus	397		99.82
KOG0293|consensus	519		99.82
KOG0313|consensus	423		99.82
KOG1273|consensus	405		99.82
KOG0643|consensus	327		99.81
KOG0289|consensus	506		99.81
KOG0310|consensus	487		99.81
KOG2394|consensus	636		99.81
KOG0305|consensus	484		99.81
KOG1274|consensus	933		99.81
KOG0282|consensus	503		99.81
KOG0300|consensus	481		99.8
KOG0283|consensus	712		99.8
KOG1446|consensus	311		99.8
KOG0303|consensus	472		99.8
KOG0267|consensus	825		99.8
KOG1332|consensus	299		99.8
KOG0316|consensus	307		99.8
KOG0274|consensus	537		99.8
KOG0294|consensus	362		99.8
KOG0269|consensus	839		99.79
KOG0641|consensus	350		99.79
KOG0278|consensus	334		99.79
KOG0265|consensus	338		99.79
KOG2096|consensus	420		99.78
KOG0278|consensus	334		99.78
KOG0288|consensus	459		99.78
KOG2445|consensus	361		99.78
KOG4283|consensus	397		99.78
KOG1036|consensus	323		99.78
KOG0646|consensus	476		99.77
KOG1063|consensus	764		99.77
KOG1332|consensus	299		99.77
KOG0771|consensus	398		99.77
KOG0281|consensus	499		99.77
KOG1539|consensus	910		99.76
KOG0646|consensus	476		99.76
KOG0307|consensus	1049		99.74
KOG1007|consensus	370		99.74
KOG1274|consensus	933		99.74
KOG1445|consensus	1012		99.73
KOG0647|consensus	347		99.73
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.73
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.73
KOG0299|consensus	479		99.72
KOG0299|consensus	479		99.72
KOG2055|consensus	514		99.72
KOG0270|consensus	463		99.72
KOG4328|consensus	498		99.72
KOG2919|consensus	406		99.71
KOG0274|consensus	537		99.71
KOG0643|consensus	327		99.71
KOG1273|consensus	405		99.71
KOG4378|consensus	673		99.7
KOG0308|consensus	735		99.69
KOG0270|consensus	463		99.69
KOG1408|consensus	1080		99.69
KOG0294|consensus	362		99.68
KOG0639|consensus	705		99.68
KOG2139|consensus	445		99.67
KOG0300|consensus	481		99.66
KOG1007|consensus	370		99.66
KOG1034|consensus	385		99.66
KOG1445|consensus	1012		99.66
KOG2096|consensus	420		99.66
KOG0301|consensus	745		99.66
KOG1523|consensus	361		99.65
KOG0649|consensus	325		99.65
KOG1524|consensus	737		99.65
KOG2394|consensus	636		99.64
KOG2106|consensus	626		99.64
KOG0288|consensus	459		99.64
KOG0268|consensus	433		99.63
KOG0290|consensus	364		99.63
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.63
KOG0307|consensus	1049		99.63
KOG0301|consensus	745		99.62
KOG0290|consensus	364		99.61
KOG2055|consensus	514		99.61
KOG0303|consensus	472		99.6
KOG1009|consensus	434		99.6
KOG2110|consensus	391		99.6
KOG0268|consensus	433		99.6
KOG1539|consensus	910		99.59
KOG2048|consensus	691		99.58
KOG1188|consensus	376		99.58
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.58
KOG0322|consensus	323		99.57
KOG2048|consensus	691		99.57
KOG1034|consensus	385		99.56
KOG0322|consensus	323		99.54
KOG0642|consensus	577		99.53
KOG2445|consensus	361		99.53
KOG0321|consensus	720		99.53
KOG1523|consensus	361		99.53
KOG4378|consensus	673		99.52
KOG1272|consensus	545		99.51
KOG1063|consensus	764		99.51
COG2319	466	FOG: WD40 repeat [General function prediction only	99.5
KOG1538|consensus	1081		99.48
KOG0649|consensus	325		99.48
KOG1408|consensus	1080		99.46
KOG1963|consensus	792		99.46
KOG4328|consensus	498		99.45
KOG1188|consensus	376		99.45
PRK01742	429	tolB translocation protein TolB; Provisional	99.44
KOG0644|consensus	1113		99.44
KOG3881|consensus	412		99.44
KOG2110|consensus	391		99.44
KOG0650|consensus	733		99.43
KOG1310|consensus	758		99.42
KOG0642|consensus	577		99.42
KOG2106|consensus	626		99.41
PRK01742	429	tolB translocation protein TolB; Provisional	99.41
KOG4227|consensus	609		99.41
KOG0650|consensus	733		99.41
KOG0280|consensus	339		99.41
KOG2919|consensus	406		99.4
KOG2315|consensus	566		99.4
KOG2321|consensus	703		99.38
KOG4547|consensus	541		99.38
PRK02889	427	tolB translocation protein TolB; Provisional	99.37
PRK03629	429	tolB translocation protein TolB; Provisional	99.37
KOG0644|consensus	1113		99.36
PRK05137	435	tolB translocation protein TolB; Provisional	99.36
PRK11028	330	6-phosphogluconolactonase; Provisional	99.36
KOG2111|consensus	346		99.35
COG2319	466	FOG: WD40 repeat [General function prediction only	99.34
KOG2111|consensus	346		99.33
PRK03629	429	tolB translocation protein TolB; Provisional	99.32
KOG0321|consensus	720		99.31
KOG1963|consensus	792		99.31
PRK02889	427	tolB translocation protein TolB; Provisional	99.3
KOG4497|consensus	447		99.29
PRK11028	330	6-phosphogluconolactonase; Provisional	99.29
KOG1587|consensus	555		99.29
KOG1272|consensus	545		99.28
PRK04922	433	tolB translocation protein TolB; Provisional	99.28
PRK04922	433	tolB translocation protein TolB; Provisional	99.28
KOG3914|consensus	390		99.28
KOG4227|consensus	609		99.28
KOG1240|consensus	1431		99.28
KOG1310|consensus	758		99.27
KOG1538|consensus	1081		99.26
KOG0771|consensus	398		99.26
PRK05137	435	tolB translocation protein TolB; Provisional	99.26
KOG3881|consensus	412		99.25
KOG1587|consensus	555		99.25
PRK00178	430	tolB translocation protein TolB; Provisional	99.24
KOG2139|consensus	445		99.23
PRK01029	428	tolB translocation protein TolB; Provisional	99.22
KOG1524|consensus	737		99.21
PRK04792	448	tolB translocation protein TolB; Provisional	99.2
KOG2041|consensus	1189		99.19
KOG0974|consensus	967		99.18
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.18
KOG1517|consensus	1387		99.17
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.15
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.15
PRK01029	428	tolB translocation protein TolB; Provisional	99.14
KOG1354|consensus	433		99.12
PRK00178	430	tolB translocation protein TolB; Provisional	99.11
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.11
KOG4532|consensus	344		99.09
KOG0974|consensus	967		99.06
KOG2321|consensus	703		99.05
KOG2695|consensus	425		99.05
COG4946	668	Uncharacterized protein related to the periplasmic	99.05
PRK04792	448	tolB translocation protein TolB; Provisional	99.04
KOG1334|consensus	559		99.03
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.03
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.03
KOG1517|consensus	1387		99.02
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.98
KOG1334|consensus	559		98.94
KOG1064|consensus	2439		98.93
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.92
KOG1064|consensus	2439		98.92
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.92
KOG2315|consensus	566		98.91
PRK04043	419	tolB translocation protein TolB; Provisional	98.87
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.86
KOG4714|consensus	319		98.84
KOG2314|consensus	698		98.84
PRK04043	419	tolB translocation protein TolB; Provisional	98.83
KOG4532|consensus	344		98.79
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.79
KOG3914|consensus	390		98.78
KOG1354|consensus	433		98.78
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.78
KOG1409|consensus	404		98.75
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.73
KOG4497|consensus	447		98.72
KOG4640|consensus	665		98.71
KOG4547|consensus	541		98.67
KOG1912|consensus	1062		98.63
COG4946	668	Uncharacterized protein related to the periplasmic	98.63
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.58
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.58
KOG1240|consensus	1431		98.57
KOG0280|consensus	339		98.56
KOG2066|consensus	846		98.56
KOG1409|consensus	404		98.56
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.55
KOG4714|consensus	319		98.55
KOG4190|consensus	1034		98.54
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.53
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.53
KOG3617|consensus	1416		98.52
KOG2695|consensus	425		98.52
KOG0309|consensus	1081		98.49
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.46
KOG4640|consensus	665		98.45
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.43
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.41
KOG2314|consensus	698		98.39
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.36
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.24
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.18
KOG1645|consensus	463		98.17
KOG1275|consensus	1118		98.16
KOG3621|consensus	726		98.14
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.12
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.12
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.1
KOG2066|consensus	846		98.09
KOG2079|consensus	1206		98.08
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.08
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.03
KOG0309|consensus	1081		98.02
KOG4649|consensus	354		98.01
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.99
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.95
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.94
KOG1832|consensus	1516		97.93
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.93
KOG2041|consensus	1189		97.91
KOG3621|consensus	726		97.87
KOG1920|consensus	1265		97.84
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.81
KOG4190|consensus	1034		97.8
KOG1912|consensus	1062		97.79
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.79
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.77
KOG0882|consensus	558		97.76
KOG4499|consensus	310		97.76
KOG2444|consensus	238		97.73
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.73
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.72
KOG1275|consensus	1118		97.69
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.66
KOG1920|consensus	1265		97.66
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.66
KOG1008|consensus	783		97.65
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.64
KOG2114|consensus	933		97.63
KOG1645|consensus	463		97.63
PRK13616	591	lipoprotein LpqB; Provisional	97.56
PRK02888	635	nitrous-oxide reductase; Validated	97.56
PRK02888	635	nitrous-oxide reductase; Validated	97.53
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.53
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.52
KOG2079|consensus	1206		97.51
KOG3617|consensus	1416		97.48
KOG0882|consensus	558		97.43
KOG2114|consensus	933		97.42
KOG3630|consensus	1405		97.38
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.22
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.18
KOG1832|consensus	1516		97.18
COG3391	381	Uncharacterized conserved protein [Function unknow	97.16
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.14
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.13
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.11
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.09
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.0
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.95
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.9
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.9
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.88
KOG4649|consensus	354		96.85
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.79
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.79
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.79
PRK13616	591	lipoprotein LpqB; Provisional	96.78
COG3391	381	Uncharacterized conserved protein [Function unknow	96.77
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.69
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.69
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.69
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.67
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.64
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.6
KOG4499|consensus	310		96.5
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.46
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.41
KOG1008|consensus	783		96.38
KOG2395|consensus	644		96.34
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	96.3
KOG2395|consensus	644		96.3
KOG2377|consensus	657		96.25
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.17
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.16
KOG2377|consensus	657		96.15
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.1
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.99
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.94
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.81
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.79
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	95.73
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.66
KOG2247|consensus	615		95.65
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.59
KOG1916|consensus	1283		95.41
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.27
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.22
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.12
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.1
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.09
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	95.05
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.52
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.52
PHA02713	557	hypothetical protein; Provisional	94.52
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.48
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.42
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.34
COG5167	776	VID27 Protein involved in vacuole import and degra	94.25
KOG1916|consensus	1283		94.25
KOG2444|consensus	238		94.0
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	93.88
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.72
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.7
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.64
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.58
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.49
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.36
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.36
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.31
KOG1897|consensus	1096		93.17
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	92.93
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	92.72
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.68
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	92.64
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.61
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.49
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.49
PRK10115	686	protease 2; Provisional	92.09
KOG4460|consensus	741		91.95
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.8
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	91.53
PHA02713	557	hypothetical protein; Provisional	91.48
PHA03098	534	kelch-like protein; Provisional	91.1
PRK10115	686	protease 2; Provisional	90.94
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	90.92
COG5167	776	VID27 Protein involved in vacuole import and degra	90.61
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	90.56
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.44
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	89.76
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	89.71
KOG4460|consensus	741		89.64
KOG3630|consensus	1405		89.59
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.53
KOG4441|consensus	571		89.04
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	89.01
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	88.92
PHA03098	534	kelch-like protein; Provisional	88.52
COG4590	733	ABC-type uncharacterized transport system, permeas	88.46
KOG4441|consensus	571		87.97
PRK13684	334	Ycf48-like protein; Provisional	87.72
PF12768	281	Rax2: Cortical protein marker for cell polarity	87.44
PHA02790	480	Kelch-like protein; Provisional	87.26
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	87.25
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	87.22
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	87.06
COG4590	733	ABC-type uncharacterized transport system, permeas	86.96
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	86.89
KOG3616|consensus	1636		86.48
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	86.47
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	85.97
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	85.75
PRK13684	334	Ycf48-like protein; Provisional	85.62
PHA02790	480	Kelch-like protein; Provisional	83.83
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	83.39
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	83.09
PF13449	326	Phytase-like: Esterase-like activity of phytase	82.97
PLN00033	398	photosystem II stability/assembly factor; Provisio	82.96
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	82.58
PF14157	63	YmzC: YmzC-like protein; PDB: 3KVP_E.	82.17
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	81.87
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	81.77
KOG3616|consensus	1636		80.42
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	80.15

>KOG0271|consensus

Probab=99.97  E-value=1e-29  Score=167.34  Aligned_cols=145  Identities=20%  Similarity=0.259  Sum_probs=125.7

Q ss_pred             cceeeeccccc---cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC
Q psy1859           4 IMQRRESSLKF---QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY   80 (162)
Q Consensus         4 ~~~~~~~~~~~---~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~   80 (162)
                      |+.++.+.+.+   .+-|++|+|+++.|++|+.|.++++|+.+.    ..+.++.++|..         =|.+++|+|||
T Consensus       103 pvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T----eTp~~t~KgH~~---------WVlcvawsPDg  169 (480)
T KOG0271|consen  103 PVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT----ETPLFTCKGHKN---------WVLCVAWSPDG  169 (480)
T ss_pred             ccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC----CCcceeecCCcc---------EEEEEEECCCc
Confidence            34445555444   567888999999999999999999976665    456777778766         69999999999


Q ss_pred             CEEEEecCCCeEEEEeCCCccc-eeeeeecccceeEE-EcC-----CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCc
Q psy1859          81 NTFATGGSDGYVNIWDGFNKKR-LCQFHRYDTGITSL-FHQ-----EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG  153 (162)
Q Consensus        81 ~~l~~~~~d~~v~~wd~~~~~~-~~~~~~~~~~v~~~-~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  153 (162)
                      +.|++|+.||.|++||.+++++ ...+.+|..+|+++ |.|     ..++|++++.||.++|||+..++++..+.+|..+
T Consensus       170 k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~  249 (480)
T KOG0271|consen  170 KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS  249 (480)
T ss_pred             chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc
Confidence            9999999999999999999866 46788999999999 887     6779999999999999999999999999999999


Q ss_pred             eeEEEecC
Q psy1859         154 ITSLCFSY  161 (162)
Q Consensus       154 v~~v~~~p  161 (162)
                      |+|++|-.
T Consensus       250 VTCvrwGG  257 (480)
T KOG0271|consen  250 VTCVRWGG  257 (480)
T ss_pred             eEEEEEcC
Confidence            99999963

>KOG0272|consensus

Probab=99.97  E-value=1.2e-30  Score=172.98  Aligned_cols=136  Identities=20%  Similarity=0.211  Sum_probs=123.4

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      ..+..++|+|+|++|++++.|.+-++||...    ........+|..         .|.+++|+|+|.++++|+.|..-+
T Consensus       262 ~RVs~VafHPsG~~L~TasfD~tWRlWD~~t----k~ElL~QEGHs~---------~v~~iaf~~DGSL~~tGGlD~~~R  328 (459)
T KOG0272|consen  262 ARVSRVAFHPSGKFLGTASFDSTWRLWDLET----KSELLLQEGHSK---------GVFSIAFQPDGSLAATGGLDSLGR  328 (459)
T ss_pred             hhheeeeecCCCceeeecccccchhhccccc----chhhHhhccccc---------ccceeEecCCCceeeccCccchhh
Confidence            5567899999999999999999999966554    334444466554         899999999999999999999999


Q ss_pred             EEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          94 IWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |||+++++++..+.+|..+|..+ |+|+|..++||+.|++++|||++....+.++.+|.+-|+.|+|+|+
T Consensus       329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~  398 (459)
T KOG0272|consen  329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQ  398 (459)
T ss_pred             eeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEeccc
Confidence            99999999999999999999999 9999999999999999999999998899999999999999999984

>KOG0263|consensus

Probab=99.97  E-value=2e-29  Score=177.62  Aligned_cols=152  Identities=26%  Similarity=0.271  Sum_probs=132.8

Q ss_pred             eeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeecc------------------------
Q psy1859           7 RRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE------------------------   62 (162)
Q Consensus         7 ~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~------------------------   62 (162)
                      +....+.++|...+|+|+.++|++++.|+++++|..+...    ....+++|....                        
T Consensus       445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s----~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLW  520 (707)
T KOG0263|consen  445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS----CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLW  520 (707)
T ss_pred             EEeecCCCceeeeeecccccceeeccCCcceeeeecccce----eEEEecCCCcceeeEEecCCceEEEecCCCceeeee
Confidence            3456678999999999999999999999999998877644    222223333211                        


Q ss_pred             ---------CcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCe
Q psy1859          63 ---------DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGY  132 (162)
Q Consensus        63 ---------~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~  132 (162)
                               ...+|...|.|++|||+..++++|+.|.++++||+.+|..++.|.+|.++|+++ |||+|++|++|+.|+.
T Consensus       521 s~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~  600 (707)
T KOG0263|consen  521 STDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL  600 (707)
T ss_pred             ecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc
Confidence                     335677789999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             EEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         133 VNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       133 i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |++||+.+++.+..+.+|++.|+++.|+.|
T Consensus       601 I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~d  630 (707)
T KOG0263|consen  601 IKIWDLANGSLVKQLKGHTGTIYSLSFSRD  630 (707)
T ss_pred             EEEEEcCCCcchhhhhcccCceeEEEEecC
Confidence            999999999999999999999999999976

>KOG0272|consensus

Probab=99.96  E-value=4.4e-28  Score=160.96  Aligned_cols=139  Identities=18%  Similarity=0.177  Sum_probs=126.8

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .+...+.+++|++||..+++|+.|..-+|||..  +  ...+..+.+|..         +|.+++|+|+|..+++|+.|+
T Consensus       301 GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR--t--gr~im~L~gH~k---------~I~~V~fsPNGy~lATgs~Dn  367 (459)
T KOG0272|consen  301 GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR--T--GRCIMFLAGHIK---------EILSVAFSPNGYHLATGSSDN  367 (459)
T ss_pred             ccccccceeEecCCCceeeccCccchhheeecc--c--CcEEEEeccccc---------ceeeEeECCCceEEeecCCCC
Confidence            344567889999999999999999999995544  4  567777777765         799999999999999999999


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +++|||++..+.+..+.+|..-|+.+ |+| .|.+|+|++.|++++||..++..+++.+.+|.+.|.++..+||
T Consensus       368 t~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d  441 (459)
T KOG0272|consen  368 TCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPD  441 (459)
T ss_pred             cEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccC
Confidence            99999999999999999999999999 999 8889999999999999999999999999999999999999986

>KOG0271|consensus

Probab=99.95  E-value=4.1e-27  Score=155.20  Aligned_cols=98  Identities=21%  Similarity=0.317  Sum_probs=95.1

Q ss_pred             ccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCcee
Q psy1859          65 IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKR  143 (162)
Q Consensus        65 ~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~  143 (162)
                      .+|..-|..+.|||+++++++++.|..|++||.++|+.+..+++|-..|+.+ |+.|.++|++|+.|.++++||+++++.
T Consensus       364 tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl  443 (480)
T KOG0271|consen  364 TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL  443 (480)
T ss_pred             hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee
Confidence            4688899999999999999999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             eeeeccCCCceeEEEecCC
Q psy1859         144 LCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       144 ~~~~~~~~~~v~~v~~~pd  162 (162)
                      ...+.+|.+.|.++.|+||
T Consensus       444 ~~DLpGh~DEVf~vDwspD  462 (480)
T KOG0271|consen  444 KQDLPGHADEVFAVDWSPD  462 (480)
T ss_pred             cccCCCCCceEEEEEecCC
Confidence            9999999999999999997

>KOG0284|consensus

Probab=99.95  E-value=1.9e-28  Score=162.27  Aligned_cols=139  Identities=19%  Similarity=0.304  Sum_probs=124.7

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ......|++++|+|+...|+++++||+|+||++...+  .  ...+.+|.-         .|.+++|+|...++++++.|
T Consensus       177 ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k--e--e~vL~GHgw---------dVksvdWHP~kgLiasgskD  243 (464)
T KOG0284|consen  177 AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK--E--ERVLRGHGW---------DVKSVDWHPTKGLIASGSKD  243 (464)
T ss_pred             HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc--h--hheeccCCC---------CcceeccCCccceeEEccCC
Confidence            3444778999999999999999999999998776543  2  223355544         69999999999999999999


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      ..|++||.++++++.++..|+..|..+ |+|++.+|++++.|..++++|+++.+.+.++++|+..|+++.|+|
T Consensus       244 nlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP  316 (464)
T KOG0284|consen  244 NLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHP  316 (464)
T ss_pred             ceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccc
Confidence            999999999999999999999999999 999999999999999999999998888999999999999999998

>KOG0266|consensus

Probab=99.95  E-value=2e-26  Score=162.39  Aligned_cols=141  Identities=21%  Similarity=0.289  Sum_probs=123.9

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ..+...|..++|+|+++++++++.|++++||+.. ..  ......+++|..         .|++++|+|+++++++|+.|
T Consensus       200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~-~~--~~~~~~l~gH~~---------~v~~~~f~p~g~~i~Sgs~D  267 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK-DD--GRNLKTLKGHST---------YVTSVAFSPDGNLLVSGSDD  267 (456)
T ss_pred             cccccceeeeEECCCCcEEEEecCCceEEEeecc-CC--CeEEEEecCCCC---------ceEEEEecCCCCEEEEecCC
Confidence            4455677899999999999999999999997662 22  356667777766         79999999999999999999


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCce--eeeeeccCCCc--eeEEEecCC
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKK--RLCQFHRYDTG--ITSLCFSYD  162 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~--v~~v~~~pd  162 (162)
                      +.|++||++++++...+..|...++.+ |++++.++++++.|+.|++||+.++.  ++..+..+...  +++++|+|+
T Consensus       268 ~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~  345 (456)
T KOG0266|consen  268 GTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPN  345 (456)
T ss_pred             CcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCC
Confidence            999999999999999999999999999 99999999999999999999999998  56667666555  999999986

>KOG0279|consensus

Probab=99.95  E-value=3.2e-26  Score=145.29  Aligned_cols=135  Identities=14%  Similarity=0.178  Sum_probs=115.4

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEE
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI   94 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~   94 (162)
                      .+..+..+++|+++++++.|+.+++||...    .+....|.+|..         .|.+++|+|+.+++++|+.|.+|++
T Consensus        65 ~v~dv~~s~dg~~alS~swD~~lrlWDl~~----g~~t~~f~GH~~---------dVlsva~s~dn~qivSGSrDkTikl  131 (315)
T KOG0279|consen   65 FVSDVVLSSDGNFALSASWDGTLRLWDLAT----GESTRRFVGHTK---------DVLSVAFSTDNRQIVSGSRDKTIKL  131 (315)
T ss_pred             EecceEEccCCceEEeccccceEEEEEecC----CcEEEEEEecCC---------ceEEEEecCCCceeecCCCcceeee
Confidence            456688999999999999999999966554    345556677766         6999999999999999999999999


Q ss_pred             EeCCCccceeeeeec-ccceeEE-EcCC--CCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          95 WDGFNKKRLCQFHRY-DTGITSL-FHQE--YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        95 wd~~~~~~~~~~~~~-~~~v~~~-~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |+............. ...|.++ |+|+  ..+++.++.|+++++||+++.+....+.+|.+.++.+++|||
T Consensus       132 wnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpD  203 (315)
T KOG0279|consen  132 WNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPD  203 (315)
T ss_pred             eeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCC
Confidence            999755443333333 7889999 9997  679999999999999999999999999999999999999998

>KOG0284|consensus

Probab=99.94  E-value=3.2e-27  Score=156.50  Aligned_cols=140  Identities=18%  Similarity=0.245  Sum_probs=123.5

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ..+...|+++.|++++.++++|+.+|.|+.|+-+.+.     +..+..|        |...|++++|+|....|++++.|
T Consensus       135 QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-----Vk~~~ah--------h~eaIRdlafSpnDskF~t~SdD  201 (464)
T KOG0284|consen  135 QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-----VKIIQAH--------HAEAIRDLAFSPNDSKFLTCSDD  201 (464)
T ss_pred             hhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-----hHHhhHh--------hhhhhheeccCCCCceeEEecCC
Confidence            3456778999999999999999999999996544332     2233334        22479999999999999999999


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |.|+|||....+.-..+.+|.-.+.++ |+|...++++++.|+.|++||.+++.++.++..|+..|..+.|+|+
T Consensus       202 g~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n  275 (464)
T KOG0284|consen  202 GTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPN  275 (464)
T ss_pred             CeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCC
Confidence            999999999998888899999999999 9999999999999999999999999999999999999999999985

>KOG0266|consensus

Probab=99.94  E-value=1.6e-25  Score=157.93  Aligned_cols=140  Identities=22%  Similarity=0.339  Sum_probs=121.9

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      ....+.++.|+++|+.+++++.++.+++|......  ......+.+         |...|.+++|+|+++++++++.|++
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~--~~~~~~l~~---------h~~~v~~~~fs~d~~~l~s~s~D~t  226 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIK--SNLLRELSG---------HTRGVSDVAFSPDGSYLLSGSDDKT  226 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeeccccc--chhhccccc---------cccceeeeEECCCCcEEEEecCCce
Confidence            35667889999999999999999999997764322  122333333         4448999999999999999999999


Q ss_pred             EEEEeC-CCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          92 VNIWDG-FNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        92 v~~wd~-~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +++||+ ..+..++++.+|...++++ |+|+++++++|+.|++|+|||+++++++..+.+|.+.|++++|++|
T Consensus       227 iriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d  299 (456)
T KOG0266|consen  227 LRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPD  299 (456)
T ss_pred             EEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCC
Confidence            999999 4458889999999999999 9999999999999999999999999999999999999999999986

>KOG0279|consensus

Probab=99.94  E-value=2e-25  Score=141.67  Aligned_cols=139  Identities=18%  Similarity=0.195  Sum_probs=117.8

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC--CCEEEEecC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE--YNTFATGGS   88 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~   88 (162)
                      .+..-+.++++++|.+.+++|+.|.++++|+.-     ....++.....       +.+=|.++.|+|.  ...|++++.
T Consensus       103 GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-----g~ck~t~~~~~-------~~~WVscvrfsP~~~~p~Ivs~s~  170 (315)
T KOG0279|consen  103 GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-----GVCKYTIHEDS-------HREWVSCVRFSPNESNPIIVSASW  170 (315)
T ss_pred             ecCCceEEEEecCCCceeecCCCcceeeeeeec-----ccEEEEEecCC-------CcCcEEEEEEcCCCCCcEEEEccC
Confidence            344557889999999999999999999996543     23333333222       1226999999998  589999999


Q ss_pred             CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |+.|++||+++.+....+.+|.+.++.+ +||||.++++|+.||.+.+||++.++.+..+. |...|.+++|+|+
T Consensus       171 DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspn  244 (315)
T KOG0279|consen  171 DKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPN  244 (315)
T ss_pred             CceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCC
Confidence            9999999999998888999999999999 99999999999999999999999999987775 7789999999995

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=6.2e-25  Score=155.17  Aligned_cols=143  Identities=19%  Similarity=0.164  Sum_probs=117.4

Q ss_pred             ccccccEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcc---cceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEE
Q psy1859          10 SSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPE---MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFA   84 (162)
Q Consensus        10 ~~~~~~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~   84 (162)
                      ..+.+.|.+++|+| ++++|++|+.|++|++|++.....   ....+..+.+|         ...|.+++|+|++ ++|+
T Consensus        72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH---------~~~V~~l~f~P~~~~iLa  142 (493)
T PTZ00421         72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH---------TKKVGIVSFHPSAMNVLA  142 (493)
T ss_pred             eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC---------CCcEEEEEeCcCCCCEEE
Confidence            34567789999999 788999999999999987754320   01223344444         4479999999986 7999


Q ss_pred             EecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCce-eEEEecC
Q psy1859          85 TGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGI-TSLCFSY  161 (162)
Q Consensus        85 ~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v-~~v~~~p  161 (162)
                      +++.|+.|++||+++++.+..+..|...+.++ |+|+|.+|++++.|+.|++||+++++.+..+..|.+.+ ..+.|.|
T Consensus       143 Sgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~  221 (493)
T PTZ00421        143 SAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK  221 (493)
T ss_pred             EEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC
Confidence            99999999999999998888888899999999 99999999999999999999999999888888887643 3556655

>KOG0273|consensus

Probab=99.94  E-value=7.7e-25  Score=147.52  Aligned_cols=152  Identities=15%  Similarity=0.166  Sum_probs=126.7

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeee-----------------------------
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR-----------------------------   59 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~-----------------------------   59 (162)
                      ...++++|.++.|+..|.++++++.|+++.+|+.  .++.....+.+....                             
T Consensus       272 l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~--~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~  349 (524)
T KOG0273|consen  272 LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDA--HTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGED  349 (524)
T ss_pred             hhccCCceEEEEEcCCCCEEEeccCCccEEEEec--cCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCC
Confidence            4567899999999999999999999999999654  222122222211111                             


Q ss_pred             -eccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCC---------CEEEEec
Q psy1859          60 -IKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEY---------NTFATGG  128 (162)
Q Consensus        60 -~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~---------~~l~~~~  128 (162)
                       ......+|...|.++.|+|.+.+|++++.|++++||..........+..|...|..+ |+|.|         ..+++++
T Consensus       350 ~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas  429 (524)
T KOG0273|consen  350 RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS  429 (524)
T ss_pred             CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee
Confidence             001345699999999999999999999999999999999988899999999999999 99853         4889999


Q ss_pred             CCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         129 SDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       129 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .|++|++||+..+.+++++..|+.+|++++|+||
T Consensus       430 ~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~  463 (524)
T KOG0273|consen  430 FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN  463 (524)
T ss_pred             cCCeEEEEEccCCceeEeeccCCCceEEEEecCC
Confidence            9999999999999999999999999999999996

>KOG0645|consensus

Probab=99.93  E-value=2.7e-24  Score=136.22  Aligned_cols=141  Identities=13%  Similarity=0.156  Sum_probs=122.7

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .++..+++++|+|.|++|++|+.|.++.||.-.  ....+.+..+.+|..         .|.+++|+++|++||++++|.
T Consensus        59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~--~~efecv~~lEGHEn---------EVK~Vaws~sG~~LATCSRDK  127 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKE--DGEFECVATLEGHEN---------EVKCVAWSASGNYLATCSRDK  127 (312)
T ss_pred             cchheeeeeeecCCCcEEEEeeccceEEEeecC--CCceeEEeeeecccc---------ceeEEEEcCCCCEEEEeeCCC
Confidence            356678899999999999999999999996443  333677888888876         599999999999999999999


Q ss_pred             eEEEEeCCCc---cceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCC---ceeeeeeccCCCceeEEEecCC
Q psy1859          91 YVNIWDGFNK---KRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFN---KKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        91 ~v~~wd~~~~---~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .|.+|.+..+   .+...+..|...|..+ |+|...+|++++.|++|++|+-..   -.+++++.+|.+.|.+++|+|.
T Consensus       128 SVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~  206 (312)
T KOG0645|consen  128 SVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNI  206 (312)
T ss_pred             eEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCC
Confidence            9999999854   4567888999999999 999999999999999999998762   2579999999999999999873

>KOG0276|consensus

Probab=99.93  E-value=4e-25  Score=153.57  Aligned_cols=140  Identities=16%  Similarity=0.219  Sum_probs=127.8

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSD   89 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d   89 (162)
                      .+...++||+.+|...+++++++|.+|++|+|+..   .....++.+|..         .|.+++|+|.. +.|++++-|
T Consensus        95 AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~---wa~~qtfeGH~H---------yVMqv~fnPkD~ntFaS~sLD  162 (794)
T KOG0276|consen   95 AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE---WACEQTFEGHEH---------YVMQVAFNPKDPNTFASASLD  162 (794)
T ss_pred             ccccceeeeeecCCCCeEEecCCccEEEEeeccCc---eeeeeEEcCcce---------EEEEEEecCCCccceeeeecc
Confidence            35678899999999999999999999999999853   667777888776         79999999976 899999999


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcC--CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ--EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ++|++|.+.+..+..++.+|...|.++ +-+  |..+|++|++|.+++|||..++.|++++.+|...|..+.|+|.
T Consensus       163 rTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~  238 (794)
T KOG0276|consen  163 RTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPE  238 (794)
T ss_pred             ccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCC
Confidence            999999999999999999999999999 555  5679999999999999999999999999999999999999983

>KOG0285|consensus

Probab=99.93  E-value=7.4e-25  Score=143.64  Aligned_cols=141  Identities=18%  Similarity=0.260  Sum_probs=126.7

Q ss_pred             eeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859           8 RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      ..+.+-+=++|+++.|...+|++|+.|++++|||+.  +  .+...++.+|..         .|..+++|+-..++.+++
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDla--t--g~LkltltGhi~---------~vr~vavS~rHpYlFs~g  212 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLA--T--GQLKLTLTGHIE---------TVRGVAVSKRHPYLFSAG  212 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcc--c--CeEEEeecchhh---------eeeeeeecccCceEEEec
Confidence            344455667999999999999999999999995554  4  566677777765         699999999999999999


Q ss_pred             CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          88 SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      .|++|+.||+...+.++.+.+|-+.|.++ .+|.-+.+++|+.|..+++||+|+...+.++.+|..+|.++.+.|
T Consensus       213 edk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~  287 (460)
T KOG0285|consen  213 EDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP  287 (460)
T ss_pred             CCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec
Confidence            99999999999999999999999999999 999999999999999999999999999999999999999998864

>KOG0286|consensus

Probab=99.93  E-value=2.8e-24  Score=137.46  Aligned_cols=137  Identities=20%  Similarity=0.268  Sum_probs=120.1

Q ss_pred             EEEEEEeeCCCeEEEEcCCCcEEEEEecCC--cccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          16 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTG--PEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      |-..+|+|.++++++|+.|....||.+...  ++.......+.+|..         .+.++.|-+ ...|++++.|.+..
T Consensus       100 VMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtg---------ylScC~f~d-D~~ilT~SGD~TCa  169 (343)
T KOG0286|consen  100 VMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTG---------YLSCCRFLD-DNHILTGSGDMTCA  169 (343)
T ss_pred             EEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccc---------eeEEEEEcC-CCceEecCCCceEE
Confidence            345789999999999999999999776643  222344445566554         799999987 56788999999999


Q ss_pred             EEeCCCccceeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          94 IWDGFNKKRLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +||+++++.+..+.+|.+.|.++ ++| +++.+++|+-|+..++||+|.+.+++.|.+|.+.|++|+|.|+
T Consensus       170 lWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~  240 (343)
T KOG0286|consen  170 LWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPS  240 (343)
T ss_pred             EEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccC
Confidence            99999999999999999999999 999 9999999999999999999999999999999999999999996

>KOG0319|consensus

Probab=99.93  E-value=1e-24  Score=153.46  Aligned_cols=139  Identities=18%  Similarity=0.236  Sum_probs=128.4

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .+...|.|++++|+.+.+++|+.|.+.+||+++  +  ......+.+|+.         .|.++.|+|..+.++++|.|.
T Consensus       461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le--~--~~l~~vLsGH~R---------Gvw~V~Fs~~dq~laT~SgD~  527 (775)
T KOG0319|consen  461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE--Q--LRLLGVLSGHTR---------GVWCVSFSKNDQLLATCSGDK  527 (775)
T ss_pred             hhcccccceEecCCCceEEecccccceeeeccc--C--ceEEEEeeCCcc---------ceEEEEeccccceeEeccCCc
Confidence            355678999999999999999999999997776  3  667777888876         899999999999999999999


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +|+||.+.+..+++++.+|...|..+ |-.+++.|++++.||.+++|+++++.|+.++..|.+.|++++-+|+
T Consensus       528 TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~  600 (775)
T KOG0319|consen  528 TVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPL  600 (775)
T ss_pred             eEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCc
Confidence            99999999999999999999999999 9999999999999999999999999999999999999999988764

>KOG0286|consensus

Probab=99.92  E-value=7.4e-24  Score=135.53  Aligned_cols=141  Identities=24%  Similarity=0.341  Sum_probs=118.8

Q ss_pred             eeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecC-CCCEEEE
Q psy1859           7 RRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ-EYNTFAT   85 (162)
Q Consensus         7 ~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~   85 (162)
                      +....+.+.+.|+.|-+ ...+++++.|.+..+|+++.    .+....|.+|..         .|.+++++| +++.|++
T Consensus       139 r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~----g~~~~~f~GH~g---------DV~slsl~p~~~ntFvS  204 (343)
T KOG0286|consen  139 RELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIET----GQQTQVFHGHTG---------DVMSLSLSPSDGNTFVS  204 (343)
T ss_pred             eeecCccceeEEEEEcC-CCceEecCCCceEEEEEccc----ceEEEEecCCcc---------cEEEEecCCCCCCeEEe
Confidence            33455556667777777 55689999999999965543    445556666654         799999999 7899999


Q ss_pred             ecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccC--CCceeEEEecC
Q psy1859          86 GGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY--DTGITSLCFSY  161 (162)
Q Consensus        86 ~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~v~~~p  161 (162)
                      |+.|+..++||++.+..++.|.+|.+.|..+ |.|+|.-+++|++|++.++||+|..+.+..+...  ..+|++++||.
T Consensus       205 g~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~  283 (343)
T KOG0286|consen  205 GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK  283 (343)
T ss_pred             cccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence            9999999999999999999999999999999 9999999999999999999999999888888632  34899999974

>KOG0315|consensus

Probab=99.92  E-value=1.4e-23  Score=131.72  Aligned_cols=144  Identities=18%  Similarity=0.216  Sum_probs=107.2

Q ss_pred             cceeeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEE
Q psy1859           4 IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF   83 (162)
Q Consensus         4 ~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l   83 (162)
                      |...++.+ ...+.++.|..+|+.+++|+.||+++||+.....  ....+.            |..+|+++..+|++..|
T Consensus        75 Pv~t~e~h-~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~--~qR~~~------------~~spVn~vvlhpnQteL  139 (311)
T KOG0315|consen   75 PVATFEGH-TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS--CQRNYQ------------HNSPVNTVVLHPNQTEL  139 (311)
T ss_pred             ceeEEecc-CCceEEEEEeecCeEEEecCCCceEEEEeccCcc--cchhcc------------CCCCcceEEecCCcceE
Confidence            33343332 3557899999999999999999999997765422  333332            22256666666666666


Q ss_pred             EEecCCCeEEEEeCCCc-------------------------------------------------cceeeeeeccccee
Q psy1859          84 ATGGSDGYVNIWDGFNK-------------------------------------------------KRLCQFHRYDTGIT  114 (162)
Q Consensus        84 ~~~~~d~~v~~wd~~~~-------------------------------------------------~~~~~~~~~~~~v~  114 (162)
                      ++|..+|.|++||+...                                                 +++.+++.|.+.+.
T Consensus       140 is~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il  219 (311)
T KOG0315|consen  140 ISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL  219 (311)
T ss_pred             EeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEE
Confidence            66666666666666522                                                 13445667888888


Q ss_pred             EE-EcCCCCEEEEecCCCeEEEEeCCCc-eeeeeeccCCCceeEEEecCC
Q psy1859         115 SL-FHQEYNTFATGGSDGYVNIWDGFNK-KRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       115 ~~-~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .+ +|||+++|++++.|.+++||+..+. +...++++|+..+++++||.|
T Consensus       220 ~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~d  269 (311)
T KOG0315|consen  220 RCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSAD  269 (311)
T ss_pred             EEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccC
Confidence            88 9999999999999999999999887 667778899999999999975

>KOG0273|consensus

Probab=99.92  E-value=5.3e-24  Score=143.51  Aligned_cols=144  Identities=17%  Similarity=0.244  Sum_probs=121.9

Q ss_pred             ccceeeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC--
Q psy1859           3 YIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY--   80 (162)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--   80 (162)
                      .|..++.- +.+.|.++.|+|.+..|+++++|++++||....    ......+..|..         .|..+.|+|.+  
T Consensus       350 ~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~----~~~~~~l~~Hsk---------ei~t~~wsp~g~v  415 (524)
T KOG0273|consen  350 RPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ----SNSVHDLQAHSK---------EIYTIKWSPTGPV  415 (524)
T ss_pred             Ccceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecCC----Ccchhhhhhhcc---------ceeeEeecCCCCc
Confidence            34555544 789999999999999999999999999965432    233334444544         69999999964  


Q ss_pred             -------CEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCC
Q psy1859          81 -------NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT  152 (162)
Q Consensus        81 -------~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  152 (162)
                             ..+++++.|+.|++||+..+.++..+..|..+|+++ |+|+|+++++|+.||.|.+|+.++++.++.+.+ .+
T Consensus       416 ~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~  494 (524)
T KOG0273|consen  416 TSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TG  494 (524)
T ss_pred             cCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CC
Confidence                   368999999999999999999999999999999999 999999999999999999999999999998875 45


Q ss_pred             ceeEEEecC
Q psy1859         153 GITSLCFSY  161 (162)
Q Consensus       153 ~v~~v~~~p  161 (162)
                      .|..++|+-
T Consensus       495 ~Ifel~Wn~  503 (524)
T KOG0273|consen  495 GIFELCWNA  503 (524)
T ss_pred             eEEEEEEcC
Confidence            689999975

>KOG0263|consensus

Probab=99.92  E-value=2.5e-24  Score=152.21  Aligned_cols=118  Identities=26%  Similarity=0.393  Sum_probs=104.0

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ..+-..+.|+.|+|+..++++|+.|.++++|+.  .+  ...+..|.+|..         +|.+++|||.|++|++|+.|
T Consensus       532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv--~~--G~~VRiF~GH~~---------~V~al~~Sp~Gr~LaSg~ed  598 (707)
T KOG0263|consen  532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDV--ST--GNSVRIFTGHKG---------PVTALAFSPCGRYLASGDED  598 (707)
T ss_pred             cccccccceEEECCcccccccCCCCceEEEEEc--CC--CcEEEEecCCCC---------ceEEEEEcCCCceEeecccC
Confidence            334456789999999999999999999999554  44  334555566654         89999999999999999999


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCC
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFN  140 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~  140 (162)
                      +.|.+||+.+++++..+.+|.+.+.++ |+.+|..|++|+.|++|++||+..
T Consensus       599 ~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  599 GLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             CcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            999999999999999999999999999 999999999999999999999864

>KOG0275|consensus

Probab=99.92  E-value=1.1e-25  Score=146.44  Aligned_cols=148  Identities=22%  Similarity=0.306  Sum_probs=126.4

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      -.-+.|+.|..|+|||++|++|+.||-|.+|++-..+  .+....+....   +..-+.++|.|+.|+.+...+++|+.|
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GK--lrKDLkYQAqd---~fMMmd~aVlci~FSRDsEMlAsGsqD  284 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGK--LRKDLKYQAQD---NFMMMDDAVLCISFSRDSEMLASGSQD  284 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccch--hhhhhhhhhhc---ceeecccceEEEeecccHHHhhccCcC
Confidence            3456788899999999999999999999998776533  32222222111   122355689999999999999999999


Q ss_pred             CeEEEEeCCCccceeeee-ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          90 GYVNIWDGFNKKRLCQFH-RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~-~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |.|++|.+++|.+++++. .|...++++ |+.|+..+.+++.|.++++.-+++|+++..+.+|.+.|+...|++|
T Consensus       285 GkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d  359 (508)
T KOG0275|consen  285 GKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD  359 (508)
T ss_pred             CcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCC
Confidence            999999999999999997 899999999 9999999999999999999999999999999999999999999876

>KOG0645|consensus

Probab=99.92  E-value=6.2e-23  Score=130.07  Aligned_cols=146  Identities=12%  Similarity=0.135  Sum_probs=120.4

Q ss_pred             eeeccccccEEEEEEeeC-CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEE
Q psy1859           7 RRESSLKFQTRCIKCFPN-KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFAT   85 (162)
Q Consensus         7 ~~~~~~~~~~~~i~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~   85 (162)
                      +..+..++.+..++|+|. |..|++++.|+.|++|.... .........+..        +|...|++++|+|.|++|++
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~-~~s~~ck~vld~--------~hkrsVRsvAwsp~g~~La~   78 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSS-GDSWTCKTVLDD--------GHKRSVRSVAWSPHGRYLAS   78 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCC-CCcEEEEEeccc--------cchheeeeeeecCCCcEEEE
Confidence            344556778899999997 88999999999999966542 111222221111        25558999999999999999


Q ss_pred             ecCCCeEEEEeCCCc--cceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc---eeeeeeccCCCceeEEEe
Q psy1859          86 GGSDGYVNIWDGFNK--KRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK---KRLCQFHRYDTGITSLCF  159 (162)
Q Consensus        86 ~~~d~~v~~wd~~~~--~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~v~~  159 (162)
                      ++.|.++.||.-..+  +++..+.+|...|.++ |+++|.+|+|++.|..+.||.+..+   .++..++.|...|..+.|
T Consensus        79 aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~W  158 (312)
T KOG0645|consen   79 ASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIW  158 (312)
T ss_pred             eeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEE
Confidence            999999999987654  6788999999999999 9999999999999999999999744   578889999999999999


Q ss_pred             cC
Q psy1859         160 SY  161 (162)
Q Consensus       160 ~p  161 (162)
                      +|
T Consensus       159 HP  160 (312)
T KOG0645|consen  159 HP  160 (312)
T ss_pred             cC
Confidence            99

>KOG0295|consensus

Probab=99.92  E-value=1.6e-23  Score=137.26  Aligned_cols=134  Identities=19%  Similarity=0.224  Sum_probs=117.7

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC---------------
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE---------------   79 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---------------   79 (162)
                      =++.+..+-||..+++++.|.++++|.....+    ....++.|..         +|.+++|.|.               
T Consensus       237 wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~----~k~~lR~hEh---------~vEci~wap~~~~~~i~~at~~~~~  303 (406)
T KOG0295|consen  237 WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ----CKAELREHEH---------PVECIAWAPESSYPSISEATGSTNG  303 (406)
T ss_pred             hEEEEEecCCeeEEEecCCCceEEEEEeccch----hhhhhhcccc---------ceEEEEecccccCcchhhccCCCCC
Confidence            35667888899999999999999998776543    3334455554         7999999874               


Q ss_pred             CCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEE
Q psy1859          80 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLC  158 (162)
Q Consensus        80 ~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~  158 (162)
                      ++.+.+++.|+.|++||+.++.++.++.+|..+|..+ |+|.|+|++++.+|+++++||+++++++.++..|+.-|+++.
T Consensus       304 ~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lD  383 (406)
T KOG0295|consen  304 GQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLD  383 (406)
T ss_pred             ccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEe
Confidence            2488999999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             ecC
Q psy1859         159 FSY  161 (162)
Q Consensus       159 ~~p  161 (162)
                      |..
T Consensus       384 fh~  386 (406)
T KOG0295|consen  384 FHK  386 (406)
T ss_pred             cCC
Confidence            874

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=9.5e-23  Score=145.33  Aligned_cols=137  Identities=19%  Similarity=0.187  Sum_probs=109.3

Q ss_pred             ccccccEEEEEEeeC-CCeEEEEcCCCcEEEEEecCCcccc----eeeeeeeeeeeccCcccceeceEEEEecCCCC-EE
Q psy1859          10 SSLKFQTRCIKCFPN-KQGYVLSSIEGRAAVEYLDTGPEMQ----KMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN-TF   83 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l   83 (162)
                      ..+...|.+++|+|+ +.+|++|+.|+.|+||++.......    .....+.+         |...|.+++|+|++. ++
T Consensus        71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g---------H~~~V~sVaf~P~g~~iL  141 (568)
T PTZ00420         71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG---------HKKKISIIDWNPMNYYIM  141 (568)
T ss_pred             cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec---------CCCcEEEEEECCCCCeEE
Confidence            445677899999996 7899999999999998765322000    11222333         445799999999985 46


Q ss_pred             EEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeE
Q psy1859          84 ATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITS  156 (162)
Q Consensus        84 ~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  156 (162)
                      ++++.|+.|++||+++++.+..+. +...+.++ |+|+|.+|++++.|+.|+|||+++++.+..+.+|.+.+.+
T Consensus       142 aSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s  214 (568)
T PTZ00420        142 CSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNT  214 (568)
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCcee
Confidence            789999999999999988776665 55779999 9999999999999999999999999999889889876543

>KOG0277|consensus

Probab=99.91  E-value=2.4e-23  Score=131.07  Aligned_cols=138  Identities=20%  Similarity=0.302  Sum_probs=116.2

Q ss_pred             cccccEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecC
Q psy1859          11 SLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGS   88 (162)
Q Consensus        11 ~~~~~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~   88 (162)
                      .++..+.++.|++ .++.+++++.|++|++|+-+  .  +..+.++++|+.         .|...+|+|.- +++++++.
T Consensus       102 EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~--r--~~Sv~Tf~gh~~---------~Iy~a~~sp~~~nlfas~Sg  168 (311)
T KOG0277|consen  102 EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN--R--PNSVQTFNGHNS---------CIYQAAFSPHIPNLFASASG  168 (311)
T ss_pred             hhhhheEEeccccccceeEEeeccCCceEeecCC--C--CcceEeecCCcc---------EEEEEecCCCCCCeEEEccC
Confidence            3566788899998 46678889999999995444  3  455667777765         79999999975 89999999


Q ss_pred             CCeEEEEeCCCccceeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCce-eeeeeccCCCceeEEEecC
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKK-RLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~v~~~p  161 (162)
                      |+.+++||++.......+..|...+.++ |+. +...++||+.|+.|++||+++-+ ++..+.+|.-.|+.|.|||
T Consensus       169 d~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sp  244 (311)
T KOG0277|consen  169 DGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSP  244 (311)
T ss_pred             CceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCc
Confidence            9999999999854444588999999999 988 77899999999999999998754 5777889999999999998

>KOG0283|consensus

Probab=99.91  E-value=3.7e-23  Score=147.15  Aligned_cols=154  Identities=19%  Similarity=0.207  Sum_probs=119.3

Q ss_pred             eeeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcc------c--------------------c-----eee--
Q psy1859           6 QRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPE------M--------------------Q-----KMK--   52 (162)
Q Consensus         6 ~~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~------~--------------------~-----~~~--   52 (162)
                      |+....+++.|.++.|++||+|||+|+.|+.|+||..-....      .                    .     ...  
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            444447889999999999999999999999999988754100      0                    0     000  


Q ss_pred             ---eeeee-------e----eeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-E
Q psy1859          53 ---YAFKC-------H----RIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-F  117 (162)
Q Consensus        53 ---~~~~~-------~----~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~  117 (162)
                         ....+       .    .......+|.+.|..+.|+.+ ++|++++.|.+|+||++....++..|. |...|+|+ |
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaF  417 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAF  417 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEe
Confidence               00000       0    000034679999999999974 588899999999999999888888884 89999999 9


Q ss_pred             cC-CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         118 HQ-EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       118 ~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +| |.+|+++|+-|+.++||++...+.+.-.. -..-|++++|+||
T Consensus       418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~Pd  462 (712)
T KOG0283|consen  418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPD  462 (712)
T ss_pred             cccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccC
Confidence            99 88999999999999999998766555444 4468999999997

>KOG0265|consensus

Probab=99.90  E-value=4.6e-22  Score=127.69  Aligned_cols=142  Identities=18%  Similarity=0.193  Sum_probs=104.4

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      ...+++.|..+.|+|+|..|++|+.|..|.+|.....   .+....+++|.         ++|..+.|.++++.+++++.
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd---ceN~~~lkgHs---------gAVM~l~~~~d~s~i~S~gt  110 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD---CENFWVLKGHS---------GAVMELHGMRDGSHILSCGT  110 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc---ccceeeecccc---------ceeEeeeeccCCCEEEEecC
Confidence            3567889999999999999999999999999874322   23344455555         48999999999999999999


Q ss_pred             CCeEEEEeCCCccceeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCC---------------------------
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGF---------------------------  139 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~---------------------------  139 (162)
                      |..++.||.++|+.+++++.|..-+..+ -+. ...++.+++.|+++++||+|                           
T Consensus       111 Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~  190 (338)
T KOG0265|consen  111 DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVI  190 (338)
T ss_pred             CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccccccee
Confidence            9999999999998888777666555544 222 22344445555555555555                           


Q ss_pred             --------------CceeeeeeccCCCceeEEEecCC
Q psy1859         140 --------------NKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       140 --------------~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                                    .+....++.+|.+.|+.+..+|+
T Consensus       191 sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~  227 (338)
T KOG0265|consen  191 SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRY  227 (338)
T ss_pred             eccccCceeeeccccCcceEEeecccCceeeEEeccC
Confidence                          44455556678888888877764

>KOG0291|consensus

Probab=99.90  E-value=2.7e-22  Score=142.05  Aligned_cols=137  Identities=18%  Similarity=0.249  Sum_probs=119.5

Q ss_pred             cccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeE
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV   92 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v   92 (162)
                      -..+.+++++|||.++++|+.||.|+|  ||..+  .-+..++..|..         .|+++.|+..|+.+++.+-||+|
T Consensus       350 ~~~i~~l~YSpDgq~iaTG~eDgKVKv--Wn~~S--gfC~vTFteHts---------~Vt~v~f~~~g~~llssSLDGtV  416 (893)
T KOG0291|consen  350 SDRITSLAYSPDGQLIATGAEDGKVKV--WNTQS--GFCFVTFTEHTS---------GVTAVQFTARGNVLLSSSLDGTV  416 (893)
T ss_pred             ccceeeEEECCCCcEEEeccCCCcEEE--EeccC--ceEEEEeccCCC---------ceEEEEEEecCCEEEEeecCCeE
Confidence            345789999999999999999999999  55544  556677776655         89999999999999999999999


Q ss_pred             EEEeCCCccceeeeeeccc-ceeEE-EcCCCCEEEEecCCC-eEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          93 NIWDGFNKKRLCQFHRYDT-GITSL-FHQEYNTFATGGSDG-YVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~-~v~~~-~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +.||+...+..+++..... ...++ ..|.|.++++|+.|. .|.+|++++|+.+..+.+|+++|.+++|+|+
T Consensus       417 RAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~  489 (893)
T KOG0291|consen  417 RAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD  489 (893)
T ss_pred             EeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc
Confidence            9999999998888875433 45566 899999999999886 6999999999999999999999999999985

>KOG0285|consensus

Probab=99.90  E-value=2.3e-22  Score=132.12  Aligned_cols=142  Identities=15%  Similarity=0.256  Sum_probs=122.4

Q ss_pred             eeccccccE---EEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEE
Q psy1859           8 RESSLKFQT---RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA   84 (162)
Q Consensus         8 ~~~~~~~~~---~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~   84 (162)
                      +..++.+|+   +.+++++-..|+.+++.|+.|+.||+..    .+.+..+-+         |...|.+++.+|.-..|+
T Consensus       185 LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~----nkvIR~YhG---------HlS~V~~L~lhPTldvl~  251 (460)
T KOG0285|consen  185 LKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY----NKVIRHYHG---------HLSGVYCLDLHPTLDVLV  251 (460)
T ss_pred             EEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh----hhhHHHhcc---------ccceeEEEeccccceeEE
Confidence            344455554   6688999999999999999999966654    334444344         445899999999999999


Q ss_pred             EecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          85 TGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        85 ~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +|+.|..+++||+++...+..+.+|..+|..+ +.|-...+++|+.|++|++||++.|+.+.++..|...|.+++.+|.
T Consensus       252 t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~  330 (460)
T KOG0285|consen  252 TGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPK  330 (460)
T ss_pred             ecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCc
Confidence            99999999999999999999999999999999 8887778999999999999999999999999999999999999874

>KOG0315|consensus

Probab=99.90  E-value=6.1e-22  Score=124.49  Aligned_cols=153  Identities=15%  Similarity=0.135  Sum_probs=121.2

Q ss_pred             eeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccc-------eeeeeee-----------------------e
Q psy1859           8 RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQ-------KMKYAFK-----------------------C   57 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~-------~~~~~~~-----------------------~   57 (162)
                      ++-....++.++..+|+...|++|..+|.|++||+.......       ..+..+.                       .
T Consensus       119 R~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~  198 (311)
T KOG0315|consen  119 RNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN  198 (311)
T ss_pred             hhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence            344455788999999999999999999999998875432110       0011110                       0


Q ss_pred             eeec------cCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCc-cceeeeeecccceeEE-EcCCCCEEEEecC
Q psy1859          58 HRIK------EDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNK-KRLCQFHRYDTGITSL-FHQEYNTFATGGS  129 (162)
Q Consensus        58 ~~~~------~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~-~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~  129 (162)
                      +...      .+..+|...+..+.+||++++|++++.|.+++||+..+- +.-..+.+|..++..+ ||.||+||+|++.
T Consensus       199 ~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass  278 (311)
T KOG0315|consen  199 HQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASS  278 (311)
T ss_pred             CCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCC
Confidence            0000      034567888999999999999999999999999999886 5566778899999999 9999999999999


Q ss_pred             CCeEEEEeCCCceeeeeeccCCCceeEEEec
Q psy1859         130 DGYVNIWDGFNKKRLCQFHRYDTGITSLCFS  160 (162)
Q Consensus       130 d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  160 (162)
                      |+.+++||+..++.+..+.+|-....|++..
T Consensus       279 d~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  279 DHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             CCceeecccccCceeeecCCcccccEEEEee
Confidence            9999999999999999999998877777654

>KOG0308|consensus

Probab=99.90  E-value=2.5e-22  Score=140.14  Aligned_cols=152  Identities=15%  Similarity=0.268  Sum_probs=128.1

Q ss_pred             eccccccEEEEEE-eeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859           9 ESSLKFQTRCIKC-FPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus         9 ~~~~~~~~~~i~~-~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      ...++..+.|+++ -++...+++|+.|+.|.||+++...  .+.+..+..-+......++..+|++++.++.+..|++|+
T Consensus       113 ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~--~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGg  190 (735)
T KOG0308|consen  113 IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGT--ATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGG  190 (735)
T ss_pred             hhcccchheeeeecccCceeEEecCCCccEEEEEccCcc--hhhhhhccccccccCCCCCccceeeeecCCcceEEEecC
Confidence            3456788999998 6788889999999999998887643  223333322222222335666899999999999999999


Q ss_pred             CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          88 SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ..+.+++||.++++.+..+++|...|..+ .++||..+++++.||+|++||+...+++.++..|...|+++.-+|+
T Consensus       191 tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~s  266 (735)
T KOG0308|consen  191 TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPS  266 (735)
T ss_pred             cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCC
Confidence            99999999999999999999999999999 9999999999999999999999999999999999999999887763

>KOG0316|consensus

Probab=99.89  E-value=6e-22  Score=123.73  Aligned_cols=120  Identities=17%  Similarity=0.250  Sum_probs=109.1

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      ....++.+.++.|+-+|++.++++.|.++++  |++..  ...+.++.+|..         .|..++.+.+...|++|+.
T Consensus        13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrL--WNp~r--g~liktYsghG~---------EVlD~~~s~Dnskf~s~Gg   79 (307)
T KOG0316|consen   13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRL--WNPLR--GALIKTYSGHGH---------EVLDAALSSDNSKFASCGG   79 (307)
T ss_pred             ecccccceEEEEEccCCCEEEEcCCCceEEe--ecccc--cceeeeecCCCc---------eeeeccccccccccccCCC
Confidence            3567788999999999999999999999999  67766  566777777765         5999999999999999999


Q ss_pred             CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK  141 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~  141 (162)
                      |..+.+||+.+|+.++++.+|...|..+ |+.+...+++|+.|.++++||-++.
T Consensus        80 Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~  133 (307)
T KOG0316|consen   80 DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR  133 (307)
T ss_pred             CceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccC
Confidence            9999999999999999999999999999 9999999999999999999998753

>KOG0292|consensus

Probab=99.89  E-value=1.1e-22  Score=146.33  Aligned_cols=135  Identities=19%  Similarity=0.302  Sum_probs=124.0

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      ..+..++|+|....++++-.+|.|.+||+...    ..+..|..|         .++|++++|||.+.+|++|++|..|+
T Consensus        10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~----tli~rFdeH---------dGpVRgv~FH~~qplFVSGGDDykIk   76 (1202)
T KOG0292|consen   10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG----TLIDRFDEH---------DGPVRGVDFHPTQPLFVSGGDDYKIK   76 (1202)
T ss_pred             ccccceecCCCCCEEEEeecCceeeeehhhhh----hHHhhhhcc---------CCccceeeecCCCCeEEecCCccEEE
Confidence            45678999999999999999999999888763    344455554         45899999999999999999999999


Q ss_pred             EEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          94 IWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      +|+..+.+++.++.+|-..|..+ |++.-.+++++++|.+|+||+..+.+++..+.+|.-.|.|..|+|
T Consensus        77 VWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp  145 (1202)
T KOG0292|consen   77 VWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP  145 (1202)
T ss_pred             EEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC
Confidence            99999999999999999999999 999999999999999999999999999999999999999999998

>KOG0282|consensus

Probab=99.89  E-value=2.8e-23  Score=140.26  Aligned_cols=140  Identities=26%  Similarity=0.414  Sum_probs=121.3

Q ss_pred             ccccccEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859          10 SSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus        10 ~~~~~~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      +.+...++++.|.| .+.+|++++.|+.|+||++-. .  ...+.++.+|..         +|.++.|+++|..|++++.
T Consensus       211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~--~~~lrtf~gH~k---------~Vrd~~~s~~g~~fLS~sf  278 (503)
T KOG0282|consen  211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-D--RRCLRTFKGHRK---------PVRDASFNNCGTSFLSASF  278 (503)
T ss_pred             cCCccccchhhhccceeeEEEecCCCceEEEEEEec-C--cceehhhhcchh---------hhhhhhccccCCeeeeeec
Confidence            44455567788999 788999999999999977643 2  567778888776         8999999999999999999


Q ss_pred             CCeEEEEeCCCccceeeeeecccceeEE-EcCCC-CEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEY-NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |+.+++||+++|+++..+. .+..++++ |+|++ ..+++|+.|+.|+.||+|+++.++.+..|-+.|..+.|-++
T Consensus       279 D~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~  353 (503)
T KOG0282|consen  279 DRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDE  353 (503)
T ss_pred             ceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccC
Confidence            9999999999999998885 45667888 99987 78999999999999999999999999999999999998664

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.89  E-value=1e-20  Score=125.22  Aligned_cols=139  Identities=21%  Similarity=0.300  Sum_probs=119.5

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .++..+.+++|+|+++++++++.+|.+.+|+++...    ....+..+.         ..+..+.|+|+++.+++++.++
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~----~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~~~   73 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE----LLRTLKGHT---------GPVRDVAASADGTYLASGSSDK   73 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC----cEEEEecCC---------cceeEEEECCCCCEEEEEcCCC
Confidence            456789999999999999999999999997776432    233333333         3688999999999999999999


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .+++||+.+++.+..+..+...+.++ |+|+++++++++.++.+.+||+++++....+..|...+.+++|+|+
T Consensus        74 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  146 (289)
T cd00200          74 TIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD  146 (289)
T ss_pred             eEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCc
Confidence            99999999888888888888899999 9999899999988999999999988888888889999999999984

>KOG0302|consensus

Probab=99.89  E-value=3.7e-22  Score=131.66  Aligned_cols=140  Identities=19%  Similarity=0.260  Sum_probs=109.3

Q ss_pred             ccccEEEEEEeeC-CCeEEEEcCCCcEEEEEecCCccccee-eeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecC
Q psy1859          12 LKFQTRCIKCFPN-KQGYVLSSIEGRAAVEYLDTGPEMQKM-KYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGS   88 (162)
Q Consensus        12 ~~~~~~~i~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~   88 (162)
                      +++.-..|+|||- ...|++|..-+.|++|......  .+. ...+.+         |...|..++|||.. ..|++|+.
T Consensus       210 hk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~--W~vd~~Pf~g---------H~~SVEDLqWSptE~~vfaScS~  278 (440)
T KOG0302|consen  210 HKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS--WKVDQRPFTG---------HTKSVEDLQWSPTEDGVFASCSC  278 (440)
T ss_pred             cCccceeeecccccccccccCccccceEeeeeccCc--eeecCccccc---------cccchhhhccCCccCceEEeeec
Confidence            3455578999994 2347777777888986544322  221 222333         55589999999976 89999999


Q ss_pred             CCeEEEEeCCCcc--ceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCC---ceeeeeeccCCCceeEEEecCC
Q psy1859          89 DGYVNIWDGFNKK--RLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFN---KKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        89 d~~v~~wd~~~~~--~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ||.|+|||+|.+.  .....+.|.+.|..+ |+..-.+|++|+.||+++|||+|+   ++++..++.|..+|++|.|+|.
T Consensus       279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~  358 (440)
T KOG0302|consen  279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH  358 (440)
T ss_pred             CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc
Confidence            9999999999872  233347899999999 999888999999999999999985   4578899999999999999983

>KOG0264|consensus

Probab=99.88  E-value=6.4e-22  Score=132.62  Aligned_cols=137  Identities=19%  Similarity=0.246  Sum_probs=112.4

Q ss_pred             EEEEEeeCC-CeEEEEcCCCcEEEEEecCCcccce---eeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCe
Q psy1859          17 RCIKCFPNK-QGYVLSSIEGRAAVEYLDTGPEMQK---MKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGY   91 (162)
Q Consensus        17 ~~i~~~~~~-~~l~~~~~~g~i~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~   91 (162)
                      ..++|++.. -.+++++.|+.+++|++.......+   ....+.+         |...|..++|++.. .+|++++.|+.
T Consensus       181 ~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~---------h~~~VeDV~~h~~h~~lF~sv~dd~~  251 (422)
T KOG0264|consen  181 YGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSG---------HEDVVEDVAWHPLHEDLFGSVGDDGK  251 (422)
T ss_pred             cccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeec---------CCcceehhhccccchhhheeecCCCe
Confidence            458999864 4688899999999988876542111   2222333         55589999999976 89999999999


Q ss_pred             EEEEeCCC--ccceeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCce-eeeeeccCCCceeEEEecCC
Q psy1859          92 VNIWDGFN--KKRLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKK-RLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        92 v~~wd~~~--~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +.|||+|+  .++.....+|.+.+.++ |+| ++..||||+.|++|.+||+|+.+ ++.++.+|...|.+|.|+|+
T Consensus       252 L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh  327 (422)
T KOG0264|consen  252 LMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH  327 (422)
T ss_pred             EEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCC
Confidence            99999994  56666778899999999 999 67789999999999999999764 68889999999999999995

>KOG0772|consensus

Probab=99.88  E-value=1.4e-22  Score=138.39  Aligned_cols=144  Identities=23%  Similarity=0.279  Sum_probs=104.8

Q ss_pred             ccccE---EEEEEeeC-CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859          12 LKFQT---RCIKCFPN-KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus        12 ~~~~~---~~i~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      .++|+   +|-+|+|. ...|++++.||+++||+.+......+.+.. +...      +-.-+++.++|+|++++|++|.
T Consensus       264 TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~-k~~~------g~Rv~~tsC~~nrdg~~iAagc  336 (641)
T KOG0772|consen  264 TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT-KPAG------GKRVPVTSCAWNRDGKLIAAGC  336 (641)
T ss_pred             cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee-ccCC------CcccCceeeecCCCcchhhhcc
Confidence            45555   66779996 567999999999999887754422222222 1111      0112689999999999999999


Q ss_pred             CCCeEEEEeCCCcc--c-eeeeeeccc--ceeEE-EcCCCCEEEEecCCCeEEEEeCCCce-eeeeeccCC--CceeEEE
Q psy1859          88 SDGYVNIWDGFNKK--R-LCQFHRYDT--GITSL-FHQEYNTFATGGSDGYVNIWDGFNKK-RLCQFHRYD--TGITSLC  158 (162)
Q Consensus        88 ~d~~v~~wd~~~~~--~-~~~~~~~~~--~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~--~~v~~v~  158 (162)
                      .||.|.+|+..+..  + +..-..|..  .|+++ ||++|++|++-+.|+++++||+++.+ ++.+..+-.  -+-+.++
T Consensus       337 ~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~  416 (641)
T KOG0772|consen  337 LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCC  416 (641)
T ss_pred             cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccc
Confidence            99999999986532  2 223345655  89999 99999999999999999999999764 455444322  2457889


Q ss_pred             ecCC
Q psy1859         159 FSYD  162 (162)
Q Consensus       159 ~~pd  162 (162)
                      ||||
T Consensus       417 FSPd  420 (641)
T KOG0772|consen  417 FSPD  420 (641)
T ss_pred             cCCC
Confidence            9986

>KOG0289|consensus

Probab=99.88  E-value=2.8e-21  Score=129.49  Aligned_cols=144  Identities=21%  Similarity=0.311  Sum_probs=115.3

Q ss_pred             eeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe
Q psy1859           7 RRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG   86 (162)
Q Consensus         7 ~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~   86 (162)
                      .....++..++.+..+|.|.||+.+++||...+.++....  .-.+..-+....         .+++.+|||||.+|.+|
T Consensus       297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~--~lt~vs~~~s~v---------~~ts~~fHpDgLifgtg  365 (506)
T KOG0289|consen  297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS--QLTVVSDETSDV---------EYTSAAFHPDGLIFGTG  365 (506)
T ss_pred             cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc--EEEEEeeccccc---------eeEEeeEcCCceEEecc
Confidence            3445677788889999999999999999998884443322  222222111111         48999999999999999


Q ss_pred             cCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC-CceeEEEecC
Q psy1859          87 GSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD-TGITSLCFSY  161 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~p  161 (162)
                      ..|+.+++||+.++..+..|.+|.++|..+ |+.+|-+|+++++|+.|++||+|..+...++.... .++.+++|.+
T Consensus       366 t~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~  442 (506)
T KOG0289|consen  366 TPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ  442 (506)
T ss_pred             CCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC
Confidence            999999999999999999999999999999 99999999999999999999999888777765332 2577777754

>KOG0641|consensus

Probab=99.88  E-value=7.4e-21  Score=118.61  Aligned_cols=157  Identities=15%  Similarity=0.168  Sum_probs=119.7

Q ss_pred             ceeeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccc-eeeeeeeeeeecc---------------------
Q psy1859           5 MQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQ-KMKYAFKCHRIKE---------------------   62 (162)
Q Consensus         5 ~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~-~~~~~~~~~~~~~---------------------   62 (162)
                      +.+....+++.|.|.+|+|+|+.+++|++|.+|++..|+..+... .....+..|...-                     
T Consensus        81 ~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga  160 (350)
T KOG0641|consen   81 LCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA  160 (350)
T ss_pred             EeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence            345567789999999999999999999999999997776554211 1122222222110                     


Q ss_pred             -----------------CcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeee--c-----ccceeEE-E
Q psy1859          63 -----------------DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR--Y-----DTGITSL-F  117 (162)
Q Consensus        63 -----------------~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~--~-----~~~v~~~-~  117 (162)
                                       ...+|++.|.++ ++=++..|++|+.|.+|+.||++-..++..+..  |     .+.+..+ .
T Consensus       161 gdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v  239 (350)
T KOG0641|consen  161 GDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV  239 (350)
T ss_pred             CcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence                             123455555554 222467899999999999999998777766542  1     2567788 9


Q ss_pred             cCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         118 HQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       118 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .|.|++|++|-.|....+||++.++.++.+..|...|.++.|+|.
T Consensus       240 dpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~  284 (350)
T KOG0641|consen  240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPG  284 (350)
T ss_pred             CCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCC
Confidence            999999999999999999999999999999999999999999983

>KOG0319|consensus

Probab=99.88  E-value=1.9e-21  Score=137.29  Aligned_cols=154  Identities=15%  Similarity=0.115  Sum_probs=122.5

Q ss_pred             eeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeecc-------------------------
Q psy1859           8 RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE-------------------------   62 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~-------------------------   62 (162)
                      +...++.-+.++....+|-+|++|+.|.++++|.++........+....+|...-                         
T Consensus       360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W  439 (775)
T KOG0319|consen  360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLW  439 (775)
T ss_pred             EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEe
Confidence            4444555566666556678899999999999987743321111111111121110                         


Q ss_pred             ------------------CcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCE
Q psy1859          63 ------------------DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNT  123 (162)
Q Consensus        63 ------------------~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~  123 (162)
                                        ....|...|.+++.+|+.+++++|+.|...++|++.+......+.+|...+.++ |+|..+.
T Consensus       440 ~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~  519 (775)
T KOG0319|consen  440 DLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQL  519 (775)
T ss_pred             cCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccce
Confidence                              124588899999999999999999999999999999988999999999999999 9999999


Q ss_pred             EEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859         124 FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus       124 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      ++|++.|.+|+||.+.+..++.++.+|...|..+.|-.
T Consensus       520 laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~  557 (775)
T KOG0319|consen  520 LATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR  557 (775)
T ss_pred             eEeccCCceEEEEEeccceeeeeecCccceeEeeeeee
Confidence            99999999999999999999999999999999988853

>KOG0973|consensus

Probab=99.88  E-value=2.5e-21  Score=141.20  Aligned_cols=143  Identities=14%  Similarity=0.119  Sum_probs=118.8

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCc--------------ccceeeeeeeeeeeccCcccceeceEEEEe
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGP--------------EMQKMKYAFKCHRIKEDGIEKIYPVNAISF   76 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   76 (162)
                      .+.+.+.|+.|+|||++||+|++|+.|.||..+...              ...+....+.+|.         ..|..+.|
T Consensus        67 ~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~---------~DV~Dv~W  137 (942)
T KOG0973|consen   67 DHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD---------SDVLDVNW  137 (942)
T ss_pred             cccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC---------Cccceecc
Confidence            345778999999999999999999999999887310              0123444455554         47999999


Q ss_pred             cCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccC-----
Q psy1859          77 HQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY-----  150 (162)
Q Consensus        77 ~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----  150 (162)
                      +|++.++++++.|+.|.+||.++.+.+..+.+|.+.|..+ |+|-|+|+++-+.|++|+||++.+-...+.+..+     
T Consensus       138 sp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~  217 (942)
T KOG0973|consen  138 SPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP  217 (942)
T ss_pred             CCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence            9999999999999999999999999999999999999999 9999999999999999999997665555555432     


Q ss_pred             -CCceeEEEecCC
Q psy1859         151 -DTGITSLCFSYD  162 (162)
Q Consensus       151 -~~~v~~v~~~pd  162 (162)
                       ......+.||||
T Consensus       218 ~~T~f~RlSWSPD  230 (942)
T KOG0973|consen  218 LTTFFLRLSWSPD  230 (942)
T ss_pred             CcceeeecccCCC
Confidence             235788999997

>KOG0306|consensus

Probab=99.88  E-value=1.7e-21  Score=137.99  Aligned_cols=141  Identities=23%  Similarity=0.360  Sum_probs=128.1

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      .-.+...+.|+++|||+++|+++--|.+++||..|.    .+...++-+|..         ||.||+.+|+++++++|+.
T Consensus       504 tLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt----lKFflsLYGHkL---------PV~smDIS~DSklivTgSA  570 (888)
T KOG0306|consen  504 TLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT----LKFFLSLYGHKL---------PVLSMDISPDSKLIVTGSA  570 (888)
T ss_pred             EEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc----eeeeeeeccccc---------ceeEEeccCCcCeEEeccC
Confidence            345678889999999999999999999999987775    344455556666         8999999999999999999


Q ss_pred             CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |..|++|-+.=|.+.+.+-+|...|.++ |-|+...+++++.|+.++-||-.....++++.+|...|++++.+|+
T Consensus       571 DKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~  645 (888)
T KOG0306|consen  571 DKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPN  645 (888)
T ss_pred             CCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCC
Confidence            9999999999999999999999999999 9999999999999999999999999999999999999999999885

>KOG0647|consensus

Probab=99.87  E-value=3.8e-21  Score=123.69  Aligned_cols=130  Identities=15%  Similarity=0.201  Sum_probs=103.0

Q ss_pred             eeccccccEEEEEEeeC-CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe
Q psy1859           8 RESSLKFQTRCIKCFPN-KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG   86 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~   86 (162)
                      +..+-...|.+|+|||. ..+++++++|++|++|++.... .... ..         ...|.++|.+++|+.+|..+++|
T Consensus        22 v~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-~~~~-ka---------~~~~~~PvL~v~WsddgskVf~g   90 (347)
T KOG0647|consen   22 VPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG-QLVP-KA---------QQSHDGPVLDVCWSDDGSKVFSG   90 (347)
T ss_pred             cCCCcccchheeEeccccCceEEecccCCceEEEEEecCC-cccc-hh---------hhccCCCeEEEEEccCCceEEee
Confidence            34555678899999995 5556688999999998776532 0111 11         11255689999999999999999


Q ss_pred             cCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCC--EEEEecCCCeEEEEeCCCceeeeeecc
Q psy1859          87 GSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYN--TFATGGSDGYVNIWDGFNKKRLCQFHR  149 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~  149 (162)
                      +.|+.+++||+.++ ....+..|..++..+ |-+...  .|+||+.|.+|+.||.|...++.++..
T Consensus        91 ~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L  155 (347)
T KOG0647|consen   91 GCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL  155 (347)
T ss_pred             ccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec
Confidence            99999999999998 556667899999999 766444  899999999999999999888877753

>KOG0295|consensus

Probab=99.87  E-value=7.1e-21  Score=125.05  Aligned_cols=137  Identities=16%  Similarity=0.191  Sum_probs=122.3

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      .+-.+.++++-|.|.++++++.|.+|+.|+++.    .-.+.++.+|+.         =|..++.+.||.++++++.|..
T Consensus       192 h~h~vS~V~f~P~gd~ilS~srD~tik~We~~t----g~cv~t~~~h~e---------wvr~v~v~~DGti~As~s~dqt  258 (406)
T KOG0295|consen  192 HEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT----GYCVKTFPGHSE---------WVRMVRVNQDGTIIASCSNDQT  258 (406)
T ss_pred             cccceeeEEEEecCCeeeecccccceeEEeccc----ceeEEeccCchH---------hEEEEEecCCeeEEEecCCCce
Confidence            344568899999999999999999999977765    456777788765         5999999999999999999999


Q ss_pred             EEEEeCCCccceeeeeecccceeEE-EcCC---------------CCEEEEecCCCeEEEEeCCCceeeeeeccCCCcee
Q psy1859          92 VNIWDGFNKKRLCQFHRYDTGITSL-FHQE---------------YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGIT  155 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~---------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  155 (162)
                      +++|-+.++++...++.|..++.++ |.|.               ++++.+++.|++|++||+.++.++-++.+|.+.|.
T Consensus       259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr  338 (406)
T KOG0295|consen  259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR  338 (406)
T ss_pred             EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence            9999999998888888999999888 7763               35999999999999999999999999999999999


Q ss_pred             EEEecC
Q psy1859         156 SLCFSY  161 (162)
Q Consensus       156 ~v~~~p  161 (162)
                      +++|+|
T Consensus       339 ~~af~p  344 (406)
T KOG0295|consen  339 GVAFSP  344 (406)
T ss_pred             eeEEcC
Confidence            999997

>KOG0318|consensus

Probab=99.87  E-value=1.2e-20  Score=129.19  Aligned_cols=146  Identities=17%  Similarity=0.231  Sum_probs=113.1

Q ss_pred             cceeeeccccc---cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC
Q psy1859           4 IMQRRESSLKF---QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY   80 (162)
Q Consensus         4 ~~~~~~~~~~~---~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~   80 (162)
                      |..++..+...   -+.|+.|+|||.+|++++.||++.+  ||..+  .+.+..+..      +.+|.+.|.+++|+||+
T Consensus       178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~i--yDGkt--ge~vg~l~~------~~aHkGsIfalsWsPDs  247 (603)
T KOG0318|consen  178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYI--YDGKT--GEKVGELED------SDAHKGSIFALSWSPDS  247 (603)
T ss_pred             CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEE--EcCCC--ccEEEEecC------CCCccccEEEEEECCCC
Confidence            33344444333   4688999999999999999999999  88776  445555443      22477799999999999


Q ss_pred             CEEEEecCCCeEEEEeCCCcccee-------------------------------------------eeeecccceeEE-
Q psy1859          81 NTFATGGSDGYVNIWDGFNKKRLC-------------------------------------------QFHRYDTGITSL-  116 (162)
Q Consensus        81 ~~l~~~~~d~~v~~wd~~~~~~~~-------------------------------------------~~~~~~~~v~~~-  116 (162)
                      ..+++++.|.++++||+.+.++++                                           .+.+|...|+++ 
T Consensus       248 ~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLt  327 (603)
T KOG0318|consen  248 TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALT  327 (603)
T ss_pred             ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEE
Confidence            999999999999999998654332                                           335678899999 


Q ss_pred             EcCCCCEEEEecCCCeEEEEeCCCceeeeee-ccCCCceeEEEe
Q psy1859         117 FHQEYNTFATGGSDGYVNIWDGFNKKRLCQF-HRYDTGITSLCF  159 (162)
Q Consensus       117 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~v~~  159 (162)
                      .+|+++++++|+.||.|.-|+..++..-+.. +.|...|.+++-
T Consensus       328 v~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~  371 (603)
T KOG0318|consen  328 VSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAA  371 (603)
T ss_pred             EcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEee
Confidence            9999999999999999999999887653322 456666666654

>KOG0292|consensus

Probab=99.87  E-value=6.6e-21  Score=137.43  Aligned_cols=138  Identities=17%  Similarity=0.247  Sum_probs=122.6

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .+.|+++.++|+|.+.+|++|++|-.|++|.+..    .++.+++.+|-.         .|+.+.||+....++++|+|-
T Consensus        49 eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~----rrclftL~GHlD---------YVRt~~FHheyPWIlSASDDQ  115 (1202)
T KOG0292|consen   49 EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT----RRCLFTLLGHLD---------YVRTVFFHHEYPWILSASDDQ  115 (1202)
T ss_pred             ccCCccceeeecCCCCeEEecCCccEEEEEeccc----ceehhhhccccc---------eeEEeeccCCCceEEEccCCC
Confidence            4678999999999999999999999999977765    568888888765         799999999999999999999


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCce---------------------------
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKK---------------------------  142 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~---------------------------  142 (162)
                      +|+||+..+++++..+.+|...|.|. |+|....+++++-|.+|+|||+..-+                           
T Consensus       116 TIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~D  195 (1202)
T KOG0292|consen  116 TIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTD  195 (1202)
T ss_pred             eEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcC
Confidence            99999999999999999999999999 99999999999999999999975210                           


Q ss_pred             --eeeeeccCCCceeEEEecC
Q psy1859         143 --RLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus       143 --~~~~~~~~~~~v~~v~~~p  161 (162)
                        .-+.+.+|..+|+-++|+|
T Consensus       196 aVVK~VLEGHDRGVNwaAfhp  216 (1202)
T KOG0292|consen  196 AVVKHVLEGHDRGVNWAAFHP  216 (1202)
T ss_pred             eeeeeeecccccccceEEecC
Confidence              1223568999999999998

>KOG0275|consensus

Probab=99.87  E-value=6.4e-22  Score=129.00  Aligned_cols=137  Identities=20%  Similarity=0.281  Sum_probs=116.5

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .+...+.|++|+.|...+++|+.||.|++|.+....    +...+.        .+|...|+++.|+.++..+++++.|.
T Consensus       261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~----ClRrFd--------rAHtkGvt~l~FSrD~SqiLS~sfD~  328 (508)
T KOG0275|consen  261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ----CLRRFD--------RAHTKGVTCLSFSRDNSQILSASFDQ  328 (508)
T ss_pred             ecccceEEEeecccHHHhhccCcCCcEEEEEEecch----HHHHhh--------hhhccCeeEEEEccCcchhhcccccc
Confidence            356778999999999999999999999998776533    332222        23555899999999999999999999


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC--CceeEEEe
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD--TGITSLCF  159 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~v~~v~~  159 (162)
                      .+++--+++|++++.+++|.+.++.. |.+||.++++++.||+|++|+.++..|+.+++...  -+|.++-.
T Consensus       329 tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~  400 (508)
T KOG0275|consen  329 TVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVIL  400 (508)
T ss_pred             eEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEE
Confidence            99999999999999999999999999 99999999999999999999999999988886432  35555543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.86  E-value=6.6e-20  Score=121.34  Aligned_cols=138  Identities=23%  Similarity=0.322  Sum_probs=116.5

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      ....+.+++++|++.++++++.++.+.+|+...    .+....+..+.         ..+.++.|+|+++.+++++.++.
T Consensus       134 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~----~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~~~~  200 (289)
T cd00200         134 HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT----GKCVATLTGHT---------GEVNSVAFSPDGEKLLSSSSDGT  200 (289)
T ss_pred             CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc----cccceeEecCc---------cccceEEECCCcCEEEEecCCCc
Confidence            456689999999988888888899999966543    22333333333         36999999999989999999999


Q ss_pred             EEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          92 VNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +++||++.++.+..+..+...+.++ |+|++.++++++.|+.|++||+.+++....+..|...|.+++|+|+
T Consensus       201 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~  272 (289)
T cd00200         201 IKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD  272 (289)
T ss_pred             EEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCC
Confidence            9999999888888887788899999 9999888988888999999999988888888889999999999985

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.86  E-value=4.1e-20  Score=138.55  Aligned_cols=139  Identities=12%  Similarity=0.184  Sum_probs=112.3

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccce----eeeeeeeeeeccCcccceeceEEEEecCC-CCEEEEe
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQK----MKYAFKCHRIKEDGIEKIYPVNAISFHQE-YNTFATG   86 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~   86 (162)
                      +.+.+.+++|+|+++++++|+.|+.|+||+.+.......    ....+..          ...+.+++|+|. +.+|+++
T Consensus       482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~----------~~~v~~l~~~~~~~~~las~  551 (793)
T PLN00181        482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS----------RSKLSGICWNSYIKSQVASS  551 (793)
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc----------cCceeeEEeccCCCCEEEEE
Confidence            456688999999999999999999999987643110010    1111111          226899999885 5899999


Q ss_pred             cCCCeEEEEeCCCccceeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          87 GSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      +.|+.|++||+.+++.+..+..|...|+++ |+| ++.+|++|+.|+.|++||++++..+..+..+ ..|.++.|++
T Consensus       552 ~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~  627 (793)
T PLN00181        552 NFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPS  627 (793)
T ss_pred             eCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeC
Confidence            999999999999998888999999999999 997 7899999999999999999999888877654 5788898854

>KOG0293|consensus

Probab=99.86  E-value=9.1e-21  Score=126.60  Aligned_cols=146  Identities=16%  Similarity=0.186  Sum_probs=115.3

Q ss_pred             eeeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEE
Q psy1859           6 QRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFAT   85 (162)
Q Consensus         6 ~~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~   85 (162)
                      .+....+...+.-+.||++|++||+++.|.+..+|....... .+...++.+|..         +|..+.||||.+++++
T Consensus       217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl~~tlvgh~~---------~V~yi~wSPDdryLla  286 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FKLKKTLVGHSQ---------PVSYIMWSPDDRYLLA  286 (519)
T ss_pred             hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-eeeeeeeecccC---------ceEEEEECCCCCeEEe
Confidence            334455678889999999999999999999999987765431 344555555544         8999999999999999


Q ss_pred             ecCCCeEEEEeCCCccceeeeee-cccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC-CceeEEEecCC
Q psy1859          86 GGSDGYVNIWDGFNKKRLCQFHR-YDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD-TGITSLCFSYD  162 (162)
Q Consensus        86 ~~~d~~v~~wd~~~~~~~~~~~~-~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~pd  162 (162)
                      |+.+..+.+||+.+|.....+.. +...+.++ |.|||..+++|+.|+.+..||+. |.....+++-. ..|.+++.++|
T Consensus       287 Cg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~D  365 (519)
T KOG0293|consen  287 CGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYD  365 (519)
T ss_pred             cCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCC
Confidence            99999999999999988776653 35667778 99999999999999999999995 45444444332 34777777665

>KOG0318|consensus

Probab=99.86  E-value=5.5e-20  Score=125.93  Aligned_cols=149  Identities=20%  Similarity=0.258  Sum_probs=107.4

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeee-------------------------------
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI-------------------------------   60 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~-------------------------------   60 (162)
                      +..+++...++|.|.++++|...|+|+||++-..+  .....+++.-..                               
T Consensus        58 H~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~--hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D  135 (603)
T KOG0318|consen   58 HAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKE--HILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD  135 (603)
T ss_pred             ccceeEEEEeCCCceEEeecCCcCcEEEEeccCcc--eeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec
Confidence            34455667799999999999999999998764422  111111111110                               


Q ss_pred             ----ccCcccceeceEEEEecCCC-CEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEE
Q psy1859          61 ----KEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVN  134 (162)
Q Consensus        61 ----~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~  134 (162)
                          ...-.+|...|.+++|-|.. -.+++|+.|+.|.+|+-..-+-...+..|..-|.++ |+|||.++++.+.||++.
T Consensus       136 SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~  215 (603)
T KOG0318|consen  136 SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY  215 (603)
T ss_pred             CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence                00223455566666666655 456666666666666654444444556788899999 999999999999999999


Q ss_pred             EEeCCCceeeeeec---cCCCceeEEEecCC
Q psy1859         135 IWDGFNKKRLCQFH---RYDTGITSLCFSYD  162 (162)
Q Consensus       135 iwd~~~~~~~~~~~---~~~~~v~~v~~~pd  162 (162)
                      +||-++++.+..+.   +|.+.|.+++|+||
T Consensus       216 iyDGktge~vg~l~~~~aHkGsIfalsWsPD  246 (603)
T KOG0318|consen  216 IYDGKTGEKVGELEDSDAHKGSIFALSWSPD  246 (603)
T ss_pred             EEcCCCccEEEEecCCCCccccEEEEEECCC
Confidence            99999999999887   89999999999998

>KOG0277|consensus

Probab=99.86  E-value=1.1e-20  Score=119.13  Aligned_cols=137  Identities=20%  Similarity=0.255  Sum_probs=112.9

Q ss_pred             cccEEEEEEeeC-CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCC
Q psy1859          13 KFQTRCIKCFPN-KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDG   90 (162)
Q Consensus        13 ~~~~~~i~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~   90 (162)
                      ......++|+++ .+.+++++.||.++||+.-..   ..++..++.|..         .|.++.|++.. +.+++++.|+
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~---s~Pi~~~kEH~~---------EV~Svdwn~~~r~~~ltsSWD~  127 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP---SKPIHKFKEHKR---------EVYSVDWNTVRRRIFLTSSWDG  127 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCC---CcchhHHHhhhh---------heEEeccccccceeEEeeccCC
Confidence            345567999997 456888999999999763322   345666666655         69999999965 7788889999


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      +|++|+...++.++++.+|..-|... |+| .+..+++++.|+.+++||++.......+..|...+.++.|+.
T Consensus       128 TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~k  200 (311)
T KOG0277|consen  128 TIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSK  200 (311)
T ss_pred             ceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccc
Confidence            99999999999999999999999999 999 778999999999999999986544444888999999999873

>KOG0269|consensus

Probab=99.86  E-value=3.7e-21  Score=136.52  Aligned_cols=138  Identities=18%  Similarity=0.289  Sum_probs=109.9

Q ss_pred             cccccEEEEEEeeC-CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecC
Q psy1859          11 SLKFQTRCIKCFPN-KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGS   88 (162)
Q Consensus        11 ~~~~~~~~i~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~   88 (162)
                      .++..+.++.|++. ..+|++|+.||+|++||+..++    ...++.+...         .|+.++|+|.. ..|+++..
T Consensus       131 EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~----S~~t~~~nSE---------SiRDV~fsp~~~~~F~s~~d  197 (839)
T KOG0269|consen  131 EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK----SKSTFRSNSE---------SIRDVKFSPGYGNKFASIHD  197 (839)
T ss_pred             hhccceeeeeeccCCccEEEecCCCceEEEEeeeccc----ccccccccch---------hhhceeeccCCCceEEEecC
Confidence            34555678899985 5778999999999997776543    2233344332         69999999964 89999999


Q ss_pred             CCeEEEEeCCCc-cceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCcee--eeeeccCCCceeEEEecCC
Q psy1859          89 DGYVNIWDGFNK-KRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKR--LCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        89 d~~v~~wd~~~~-~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~v~~~pd  162 (162)
                      .|.+++||++.. ++...+.+|.+++.++ |+|++.+||||+.|++|+|||..+++.  +.++. -..+|..|.|-|+
T Consensus       198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~  274 (839)
T KOG0269|consen  198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPA  274 (839)
T ss_pred             CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccC
Confidence            999999999985 4567888999999999 999999999999999999999986543  44333 3457899999885

>KOG1446|consensus

Probab=99.86  E-value=1.1e-19  Score=117.45  Aligned_cols=155  Identities=12%  Similarity=0.174  Sum_probs=117.3

Q ss_pred             eeeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeee--------------------------
Q psy1859           6 QRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR--------------------------   59 (162)
Q Consensus         6 ~~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~--------------------------   59 (162)
                      -+....++..|..|+.+|-+..+++++.|++|++|++...+  ......+.+.+                          
T Consensus        93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~--cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~R  170 (311)
T KOG1446|consen   93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK--CQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLR  170 (311)
T ss_pred             EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC--CceEEecCCCcceeECCCCcEEEEecCCCeEEEEEec
Confidence            34456677788999999999999999999999998876443  21111100000                          


Q ss_pred             ecc--------CcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccce---eEE-EcCCCCEEEEe
Q psy1859          60 IKE--------DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGI---TSL-FHQEYNTFATG  127 (162)
Q Consensus        60 ~~~--------~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v---~~~-~~~~~~~l~~~  127 (162)
                      ...        -..+-....+.+.|+|+|+.++.++..+.+++.|.-+|..+..+..+...-   ... |+||++++++|
T Consensus       171 s~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~g  250 (311)
T KOG1446|consen  171 SFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSG  250 (311)
T ss_pred             ccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEe
Confidence            000        011223357789999999999999999999999999998888777654332   234 99999999999


Q ss_pred             cCCCeEEEEeCCCceeeeeecc-CCCceeEEEecCC
Q psy1859         128 GSDGYVNIWDGFNKKRLCQFHR-YDTGITSLCFSYD  162 (162)
Q Consensus       128 ~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~pd  162 (162)
                      +.||+|.+|+++++..+..+.+ +.+++.++.|+|.
T Consensus       251 s~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~  286 (311)
T KOG1446|consen  251 SDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR  286 (311)
T ss_pred             cCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCc
Confidence            9999999999999999999987 6889999999983

>PTZ00421 coronin; Provisional

Probab=99.86  E-value=5.2e-20  Score=130.42  Aligned_cols=142  Identities=16%  Similarity=0.145  Sum_probs=104.3

Q ss_pred             EEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeee--e--eeccCcccceeceEEEEecC-CCCEEEEecCCCe
Q psy1859          17 RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC--H--RIKEDGIEKIYPVNAISFHQ-EYNTFATGGSDGY   91 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~~   91 (162)
                      +....++++..+++++.+.....|  +...  ...+..+..  .  .......+|.+.|.+++|+| ++++|++++.|+.
T Consensus        24 ~~~~~~~d~~~~~~~n~~~~a~~w--~~~g--g~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt   99 (493)
T PTZ00421         24 TPSTALWDCSNTIACNDRFIAVPW--QQLG--STAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT   99 (493)
T ss_pred             ccccccCCCCCcEeECCceEEEEE--ecCC--ceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence            334455666666666666655554  3222  111111110  0  00001234667899999999 7789999999999


Q ss_pred             EEEEeCCCc-------cceeeeeecccceeEE-EcCCC-CEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          92 VNIWDGFNK-------KRLCQFHRYDTGITSL-FHQEY-NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        92 v~~wd~~~~-------~~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |++||+..+       +++..+.+|...|.++ |+|++ .+|++++.|+.|+|||+++++.+..+..|...|.+++|+||
T Consensus       100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd  179 (493)
T PTZ00421        100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD  179 (493)
T ss_pred             EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC
Confidence            999999764       3466778899999999 99975 69999999999999999999998889999999999999986

>KOG1407|consensus

Probab=99.86  E-value=5.2e-21  Score=120.99  Aligned_cols=140  Identities=19%  Similarity=0.262  Sum_probs=108.7

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCC
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDG   90 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~   90 (162)
                      ...++.+++|+.+|..|++|+.|+++.+|..+...  ........+         |.+.|..+.|+|.. .+|++++.|.
T Consensus        19 ~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r--~~~~~~~~g---------h~~svdql~w~~~~~d~~atas~dk   87 (313)
T KOG1407|consen   19 HVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR--FRKELVYRG---------HTDSVDQLCWDPKHPDLFATASGDK   87 (313)
T ss_pred             hhhcceEEEEcccCceeeecccCCceEEEEecchh--hhhhhcccC---------CCcchhhheeCCCCCcceEEecCCc
Confidence            45677899999999999999999999998777543  222223333         44467888887765 6788888888


Q ss_pred             eEEEEeCCCcccee------------------------------------------------------------------
Q psy1859          91 YVNIWDGFNKKRLC------------------------------------------------------------------  104 (162)
Q Consensus        91 ~v~~wd~~~~~~~~------------------------------------------------------------------  104 (162)
                      .|++||.+.++++.                                                                  
T Consensus        88 ~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~G  167 (313)
T KOG1407|consen   88 TIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNG  167 (313)
T ss_pred             eEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecC
Confidence            88888887554322                                                                  


Q ss_pred             ----------------eeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         105 ----------------QFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       105 ----------------~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                                      .++.|.....++ |+|+|+++++|+.|..+.+||+...-|++.+..+.-+|..++|+.|
T Consensus       168 lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~d  242 (313)
T KOG1407|consen  168 LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHD  242 (313)
T ss_pred             CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccC
Confidence                            223455555677 9999999999999999999999988888888888999999999865

>KOG1407|consensus

Probab=99.86  E-value=2.7e-20  Score=117.80  Aligned_cols=138  Identities=19%  Similarity=0.246  Sum_probs=120.9

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      ..+..+..++|+-++.+|+..+..|.|.|..|-  .  .+++.+++.|+.         ...||.|+|+|++|++|+.|-
T Consensus       145 ~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp--s--Lkpv~si~AH~s---------nCicI~f~p~GryfA~GsADA  211 (313)
T KOG1407|consen  145 QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP--S--LKPVQSIKAHPS---------NCICIEFDPDGRYFATGSADA  211 (313)
T ss_pred             cccceeeeeeecCCCCEEEEecCCceEEEEecc--c--cccccccccCCc---------ceEEEEECCCCceEeeccccc
Confidence            345566778999778888888888999994443  3  677777777775         599999999999999999999


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .+.+||+..--+.+.+..+.-+|..+ |+.+|++|+++++|..|-|=++.+|..+..++ +.++-..|+|+|.
T Consensus       212 lvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk  283 (313)
T KOG1407|consen  212 LVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPK  283 (313)
T ss_pred             eeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCC
Confidence            99999999888888899999999999 99999999999999999999999999998886 7778999999984

>KOG0305|consensus

Probab=99.86  E-value=8.3e-21  Score=131.60  Aligned_cols=135  Identities=17%  Similarity=0.315  Sum_probs=116.9

Q ss_pred             cccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeE
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV   92 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v   92 (162)
                      .+.++++.|+++|.+|++|..+|.+.||+..  +  .+....+.++        |...|.+++|+  +..+.+|+.++.|
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~--~--~k~~~~~~~~--------h~~rvg~laW~--~~~lssGsr~~~I  282 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVK--E--QKKTRTLRGS--------HASRVGSLAWN--SSVLSSGSRDGKI  282 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehh--h--ccccccccCC--------cCceeEEEecc--CceEEEecCCCcE
Confidence            7889999999999999999999999995543  3  3344444441        33479999998  6789999999999


Q ss_pred             EEEeCCCccceee-eeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          93 NIWDGFNKKRLCQ-FHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        93 ~~wd~~~~~~~~~-~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      ..+|++..+.... +..|...|..+ |++|+.++++|+.|+.+.|||.....+..++..|...|.+++|+|
T Consensus       283 ~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP  353 (484)
T KOG0305|consen  283 LNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCP  353 (484)
T ss_pred             EEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCC
Confidence            9999998766554 78899999999 999999999999999999999988888888999999999999998

>KOG0973|consensus

Probab=99.85  E-value=1.4e-20  Score=137.36  Aligned_cols=150  Identities=14%  Similarity=0.184  Sum_probs=120.0

Q ss_pred             ccccccEEEEEEeeCCCeEEEEc--CCCcEEEEEecCCcccce-eeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSS--IEGRAAVEYLDTGPEMQK-MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG   86 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~--~~g~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~   86 (162)
                      .+....|.+|.++|++..+++|+  .|+.+.||..+.-..... ....++.+  ...-..|.+.|.|+.|+|+|++||+|
T Consensus        10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~--l~~m~~h~~sv~CVR~S~dG~~lAsG   87 (942)
T KOG0973|consen   10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKH--LCTMDDHDGSVNCVRFSPDGSYLASG   87 (942)
T ss_pred             ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchh--heeeccccCceeEEEECCCCCeEeec
Confidence            34456688999999999999998  888889987654220000 00001111  01122377799999999999999999


Q ss_pred             cCCCeEEEEeCCC------------------ccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeee
Q psy1859          87 GSDGYVNIWDGFN------------------KKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQF  147 (162)
Q Consensus        87 ~~d~~v~~wd~~~------------------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  147 (162)
                      ++|..|.+|....                  ++.+..+.+|.+.|.++ |+|++.+|++++.|++|.|||.++.+.+.++
T Consensus        88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl  167 (942)
T KOG0973|consen   88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL  167 (942)
T ss_pred             cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeee
Confidence            9999999998772                  13566788999999999 9999999999999999999999999999999


Q ss_pred             ccCCCceeEEEecC
Q psy1859         148 HRYDTGITSLCFSY  161 (162)
Q Consensus       148 ~~~~~~v~~v~~~p  161 (162)
                      .+|.+.|-.+.|.|
T Consensus       168 ~~H~s~VKGvs~DP  181 (942)
T KOG0973|consen  168 RGHQSLVKGVSWDP  181 (942)
T ss_pred             ecccccccceEECC
Confidence            99999999999988

>KOG0296|consensus

Probab=99.85  E-value=7e-20  Score=120.42  Aligned_cols=139  Identities=17%  Similarity=0.150  Sum_probs=121.0

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .++..+.+++.+|+.+++++|+.|....||+...    ......+.+|..         .|+++.|+.+|.+|++|..+|
T Consensus        62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~----ge~~~eltgHKD---------SVt~~~FshdgtlLATGdmsG  128 (399)
T KOG0296|consen   62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIST----GEFAGELTGHKD---------SVTCCSFSHDGTLLATGDMSG  128 (399)
T ss_pred             hcCCceEEEEeCCCCceEEecCCCceEEEEEccC----CcceeEecCCCC---------ceEEEEEccCceEEEecCCCc
Confidence            4567789999999999999999999999965543    335556666655         799999999999999999999


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .|++|+..++.....+......+.-+ |||.+..|++|+.||.+.+|.+.++...+.+.+|..++++=.|.||
T Consensus       129 ~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd  201 (399)
T KOG0296|consen  129 KVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD  201 (399)
T ss_pred             cEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCC
Confidence            99999999998887776556677778 9999999999999999999999988788889999999999999886

>KOG0306|consensus

Probab=99.85  E-value=4.4e-20  Score=131.00  Aligned_cols=148  Identities=18%  Similarity=0.129  Sum_probs=125.5

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcc---cceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPE---MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      .+.+.+..++.+||++.+++|+.|.+|++|++.....   ..+....+.-.+.    ......|.|+++||++++++++-
T Consensus       452 AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt----Lel~ddvL~v~~Spdgk~LaVsL  527 (888)
T KOG0306|consen  452 AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT----LELEDDVLCVSVSPDGKLLAVSL  527 (888)
T ss_pred             ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE----EeccccEEEEEEcCCCcEEEEEe
Confidence            5678899999999999999999999999999854321   1222222221111    11334799999999999999999


Q ss_pred             CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          88 SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      -|.++++|-+.+-+....+.+|.-+|.++ ++||+++++||+.|..|++|-+.-|.|...+.+|.+.|.++.|.|+
T Consensus       528 LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~  603 (888)
T KOG0306|consen  528 LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPK  603 (888)
T ss_pred             ccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEccc
Confidence            99999999999998888999999999999 9999999999999999999999999999999999999999999984

>KOG0267|consensus

Probab=99.85  E-value=8.6e-22  Score=138.90  Aligned_cols=139  Identities=22%  Similarity=0.282  Sum_probs=124.7

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ..+...|.++.++++...+++|+.+|+|++||+..    .+.+.++.||..         .+.+++|+|.+.+++.++.|
T Consensus        67 ~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee----Ak~vrtLtgh~~---------~~~sv~f~P~~~~~a~gStd  133 (825)
T KOG0267|consen   67 TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE----AKIVRTLTGHLL---------NITSVDFHPYGEFFASGSTD  133 (825)
T ss_pred             eccCCcceeeecCcchhhhcccccCCceeeeehhh----hhhhhhhhcccc---------CcceeeeccceEEecccccc
Confidence            34567789999999999999999999999976653    456667778776         59999999999999999999


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      +.+.+||.+...+...+..|...+..+ |+|+|++++.+++|..++|||+..|+.+..|..|.+.+.++.|+|
T Consensus       134 td~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp  206 (825)
T KOG0267|consen  134 TDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP  206 (825)
T ss_pred             ccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCc
Confidence            999999999888899998888888888 999999999999999999999999999999999999999999987

>KOG0302|consensus

Probab=99.85  E-value=1.7e-20  Score=123.95  Aligned_cols=117  Identities=27%  Similarity=0.447  Sum_probs=95.2

Q ss_pred             ccccEEEEEEeeC-CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          12 LKFQTRCIKCFPN-KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        12 ~~~~~~~i~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      ++..|..++|||. ...|++|+.||.|+||+.....  .+.....+.|.         ..|..|.|+....+|++|+.||
T Consensus       256 H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~--~~~~~~~kAh~---------sDVNVISWnr~~~lLasG~DdG  324 (440)
T KOG0302|consen  256 HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP--KKAAVSTKAHN---------SDVNVISWNRREPLLASGGDDG  324 (440)
T ss_pred             cccchhhhccCCccCceEEeeecCceEEEEEecCCC--ccceeEeeccC---------CceeeEEccCCcceeeecCCCc
Confidence            4444566889995 5678999999999997776543  22223334444         3799999999888999999999


Q ss_pred             eEEEEeCCC---ccceeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCC
Q psy1859          91 YVNIWDGFN---KKRLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGF  139 (162)
Q Consensus        91 ~v~~wd~~~---~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~  139 (162)
                      .++|||+++   ++++..++-|..+|+++ |+| +...+++++.|.+|.+||+.
T Consensus       325 t~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  325 TLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             eEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            999999997   57888999999999999 999 55678888999999999985

>KOG0772|consensus

Probab=99.85  E-value=4.4e-20  Score=126.36  Aligned_cols=148  Identities=22%  Similarity=0.292  Sum_probs=108.3

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccc---eeeeeeeeeeecc-----------------------------
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQ---KMKYAFKCHRIKE-----------------------------   62 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~~~~~~-----------------------------   62 (162)
                      -|.++++.|.|.+|++|+.|-+|++|+|.......   +.+....+|..+.                             
T Consensus       169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~  248 (641)
T KOG0772|consen  169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEI  248 (641)
T ss_pred             EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCcee
Confidence            35668899999999999999999999985432111   1111111111111                             


Q ss_pred             --------------CcccceeceEEEEecCCC-CEEEEecCCCeEEEEeCCCccc-eeeee-----ecccceeEE-EcCC
Q psy1859          63 --------------DGIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWDGFNKKR-LCQFH-----RYDTGITSL-FHQE  120 (162)
Q Consensus        63 --------------~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v~~wd~~~~~~-~~~~~-----~~~~~v~~~-~~~~  120 (162)
                                    +-++|.+.+++..|+|.. ..|++++.||++++||+.+.+. .+.++     +..-+++.+ |+|+
T Consensus       249 ~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrd  328 (641)
T KOG0772|consen  249 VEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRD  328 (641)
T ss_pred             eeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCC
Confidence                          346899999999999987 7899999999999999987543 33333     223467788 9999


Q ss_pred             CCEEEEecCCCeEEEEeCCCce---eeeeeccCCC--ceeEEEecCC
Q psy1859         121 YNTFATGGSDGYVNIWDGFNKK---RLCQFHRYDT--GITSLCFSYD  162 (162)
Q Consensus       121 ~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~--~v~~v~~~pd  162 (162)
                      |+++++|+.||.|.+|+.+...   ....-.+|..  .|+||.||+|
T Consensus       329 g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d  375 (641)
T KOG0772|consen  329 GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD  375 (641)
T ss_pred             cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc
Confidence            9999999999999999985432   1333356766  8999999986

>KOG0296|consensus

Probab=99.85  E-value=1.1e-19  Score=119.56  Aligned_cols=128  Identities=16%  Similarity=0.236  Sum_probs=108.9

Q ss_pred             eeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859           8 RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      ....++..+.++.|+.+|.+|++|.-+|.+.||..+...  .+..+.....           .+.=+.|||.+..|++|+
T Consensus       101 eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~--~~~~~~~e~~-----------dieWl~WHp~a~illAG~  167 (399)
T KOG0296|consen  101 ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG--EQWKLDQEVE-----------DIEWLKWHPRAHILLAGS  167 (399)
T ss_pred             EecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc--eEEEeecccC-----------ceEEEEecccccEEEeec
Confidence            345678889999999999999999999999996655433  3322221111           478899999999999999


Q ss_pred             CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859          88 SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      .||.+.+|.+.+....+.+.+|..++++= |.|+|+.++++..||+|++||.+++.++.++.
T Consensus       168 ~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  168 TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT  229 (399)
T ss_pred             CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEec
Confidence            99999999999988889999999999988 99999999999999999999999999888775

>KOG0264|consensus

Probab=99.85  E-value=3.9e-20  Score=124.16  Aligned_cols=144  Identities=18%  Similarity=0.223  Sum_probs=111.4

Q ss_pred             eeccccccEEEEEEeeC-CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEE
Q psy1859           8 RESSLKFQTRCIKCFPN-KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFAT   85 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~   85 (162)
                      ....+...+..++|++- ...|++++.|+.+.|||....+  .+.......         |.+.|.+++|+|.+ .+||+
T Consensus       222 ~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~--~~~~~~~~a---------h~~~vn~~~fnp~~~~ilAT  290 (422)
T KOG0264|consen  222 IFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT--SKPSHSVKA---------HSAEVNCVAFNPFNEFILAT  290 (422)
T ss_pred             EeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC--CCCcccccc---------cCCceeEEEeCCCCCceEEe
Confidence            44556667778899985 5678888999999996655311  333333333         55589999999976 78999


Q ss_pred             ecCCCeEEEEeCCCc-cceeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCc-e-------------eeeeec
Q psy1859          86 GGSDGYVNIWDGFNK-KRLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNK-K-------------RLCQFH  148 (162)
Q Consensus        86 ~~~d~~v~~wd~~~~-~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~-~-------------~~~~~~  148 (162)
                      |+.|++|.+||+|+- +++..+..|...|..+ |+| ....|++++.|+.+.+||+..- +             .+-.-.
T Consensus       291 ~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~Hg  370 (422)
T KOG0264|consen  291 GSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHG  370 (422)
T ss_pred             ccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEec
Confidence            999999999999984 6788999999999999 999 4558899999999999998531 1             122234


Q ss_pred             cCCCceeEEEecCC
Q psy1859         149 RYDTGITSLCFSYD  162 (162)
Q Consensus       149 ~~~~~v~~v~~~pd  162 (162)
                      +|...|..+.|+|+
T Consensus       371 GH~~kV~DfsWnp~  384 (422)
T KOG0264|consen  371 GHTAKVSDFSWNPN  384 (422)
T ss_pred             CcccccccccCCCC
Confidence            78889999999985

>KOG0640|consensus

Probab=99.85  E-value=4.1e-20  Score=119.83  Aligned_cols=154  Identities=16%  Similarity=0.163  Sum_probs=118.1

Q ss_pred             eeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCC--cccceeee---eeeeeeeccCcccceeceEEEEecCCCCE
Q psy1859           8 RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTG--PEMQKMKY---AFKCHRIKEDGIEKIYPVNAISFHQEYNT   82 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~p~~~~   82 (162)
                      ..+.++...++.+|+|||.++++|+.|..|+|.+.+..  +.+.+...   +...|+..+....|.+.|.++.|+|....
T Consensus       107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I  186 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI  186 (430)
T ss_pred             EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence            45668888999999999999999999999999444310  00011111   11223444456678889999999999999


Q ss_pred             EEEecCCCeEEEEeCCCccceeeee--ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeee---ccCCCceeE
Q psy1859          83 FATGGSDGYVNIWDGFNKKRLCQFH--RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQF---HRYDTGITS  156 (162)
Q Consensus        83 l~~~~~d~~v~~wd~~~~~~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~  156 (162)
                      |++++.|+.|++||+.+....+.++  ....++.++ |+|.|.++++|.+...+++||+.+-++....   .+|.+.|++
T Consensus       187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~  266 (430)
T KOG0640|consen  187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQ  266 (430)
T ss_pred             EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeE
Confidence            9999999999999998753332222  245679999 9999999999999999999999998875443   368899999


Q ss_pred             EEecC
Q psy1859         157 LCFSY  161 (162)
Q Consensus       157 v~~~p  161 (162)
                      |.+++
T Consensus       267 V~Ys~  271 (430)
T KOG0640|consen  267 VRYSS  271 (430)
T ss_pred             EEecC
Confidence            99886

>KOG0291|consensus

Probab=99.85  E-value=2.1e-19  Score=127.65  Aligned_cols=136  Identities=15%  Similarity=0.260  Sum_probs=113.9

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCC-CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIE-GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      -...+..++|+..|.+++.|+.. |.+-||.|..+.    .++...+|-         ..+.+++++|||+++++|+.||
T Consensus       306 s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs----YVlKQQgH~---------~~i~~l~YSpDgq~iaTG~eDg  372 (893)
T KOG0291|consen  306 SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES----YVLKQQGHS---------DRITSLAYSPDGQLIATGAEDG  372 (893)
T ss_pred             ccceeeEEEecccCCEEEEcCCccceEEEEEeeccc----eeeeccccc---------cceeeEEECCCCcEEEeccCCC
Confidence            34567888999999999998666 899999988643    444444444         4799999999999999999999


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC-CceeEEEec
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD-TGITSLCFS  160 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~  160 (162)
                      .|++||..++-++.++..|.+.++.+ |+..|+.+++++-||+|+.||++..+..+++.... -...+++..
T Consensus       373 KVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD  444 (893)
T KOG0291|consen  373 KVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVD  444 (893)
T ss_pred             cEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEc
Confidence            99999999999999999999999999 99999999999999999999999988888886433 133444443

>KOG0310|consensus

Probab=99.84  E-value=5.1e-20  Score=124.78  Aligned_cols=140  Identities=16%  Similarity=0.212  Sum_probs=115.4

Q ss_pred             eeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEe
Q psy1859           8 RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATG   86 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~   86 (162)
                      ..+.++..+.++.|..||+.|++|...|.|+|  ||.++  ......+..|+.         +|..+.|+|++ ..+++|
T Consensus        63 ~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~v--fD~k~--r~iLR~~~ah~a---------pv~~~~f~~~d~t~l~s~  129 (487)
T KOG0310|consen   63 TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKV--FDMKS--RVILRQLYAHQA---------PVHVTKFSPQDNTMLVSG  129 (487)
T ss_pred             hHHhhccceeEEEeecCCeEEEccCCcCcEEE--ecccc--HHHHHHHhhccC---------ceeEEEecccCCeEEEec
Confidence            35667788899999999999999999999999  55443  344445555554         89999999987 677889


Q ss_pred             cCCCeEEEEeCCCccceeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCc-eeeeeeccCCCceeEEEecC
Q psy1859          87 GSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNK-KRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~p  161 (162)
                      ++|+.+++||+.+...+..+.+|...|.+. |+| ++..+++|+.||.|++||++.. ..+..+ .|..+|.++.|-|
T Consensus       130 sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lp  206 (487)
T KOG0310|consen  130 SDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALP  206 (487)
T ss_pred             CCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcC
Confidence            999999999999887766888999999999 999 4558999999999999999987 455555 4888898888765

>KOG1036|consensus

Probab=99.84  E-value=4.9e-20  Score=118.73  Aligned_cols=129  Identities=60%  Similarity=0.942  Sum_probs=117.8

Q ss_pred             CcccceeeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC
Q psy1859           1 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY   80 (162)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~   80 (162)
                      |..+.++.+++++.+++||++.|++.-+++++-||.|.+=.+|.........+.|++|+..+.+.....+|.+|+|+|-.
T Consensus       165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~  244 (323)
T KOG1036|consen  165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH  244 (323)
T ss_pred             ccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence            45678899999999999999999988899999999999877887765677889999999999888999999999999998


Q ss_pred             CEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecC
Q psy1859          81 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS  129 (162)
Q Consensus        81 ~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~  129 (162)
                      ..|++|+.||.|.+||+.+.+.+..+......|..+ |+.+|..||+++.
T Consensus       245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            999999999999999999999999998887889999 9999999999963

>KOG1009|consensus

Probab=99.84  E-value=2.3e-19  Score=119.41  Aligned_cols=147  Identities=14%  Similarity=0.155  Sum_probs=116.9

Q ss_pred             ccccccEEEEEEeeCCC-eEEEEcCCCcEEEEEecCCcccce-eeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859          10 SSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQK-MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      -.-..++..+.|.++.. .+++|+.|..|++|..+....... ....+  +..   ...|..+|+++.|+|+|.++++|+
T Consensus        10 wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y--~s~---Ls~H~~aVN~vRf~p~gelLASg~   84 (434)
T KOG1009|consen   10 WHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEY--LSS---LSRHTRAVNVVRFSPDGELLASGG   84 (434)
T ss_pred             ecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEE--eec---ccCCcceeEEEEEcCCcCeeeecC
Confidence            33456778888988765 899999999999998875442221 11111  110   122666899999999999999999


Q ss_pred             CCCeEEEEeCC--------C--------ccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccC
Q psy1859          88 SDGYVNIWDGF--------N--------KKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY  150 (162)
Q Consensus        88 ~d~~v~~wd~~--------~--------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  150 (162)
                      .+|.+.+|-..        +        +...+.+..|...+..+ |+|++.++++++-|+.+++||+..|+....+..|
T Consensus        85 D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh  164 (434)
T KOG1009|consen   85 DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH  164 (434)
T ss_pred             CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc
Confidence            99999999766        2        12234556788999999 9999999999999999999999999999999999


Q ss_pred             CCceeEEEecC
Q psy1859         151 DTGITSLCFSY  161 (162)
Q Consensus       151 ~~~v~~v~~~p  161 (162)
                      ...|..++|.|
T Consensus       165 ~~yvqgvawDp  175 (434)
T KOG1009|consen  165 EHYVQGVAWDP  175 (434)
T ss_pred             ccccceeecch
Confidence            99999999987

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.84  E-value=7.4e-19  Score=131.87  Aligned_cols=137  Identities=17%  Similarity=0.201  Sum_probs=111.2

Q ss_pred             cccccEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEec-CCCCEEEEecC
Q psy1859          11 SLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH-QEYNTFATGGS   88 (162)
Q Consensus        11 ~~~~~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~~~~   88 (162)
                      .+...+.+++|+| ++.+|++|+.|+.|++|++...    .....+..+.          .+.++.|+ +++..|++|+.
T Consensus       573 ~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~----~~~~~~~~~~----------~v~~v~~~~~~g~~latgs~  638 (793)
T PLN00181        573 EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG----VSIGTIKTKA----------NICCVQFPSESGRSLAFGSA  638 (793)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC----cEEEEEecCC----------CeEEEEEeCCCCCEEEEEeC
Confidence            3556789999997 7889999999999999776532    2333333221          58899995 46899999999


Q ss_pred             CCeEEEEeCCCcc-ceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc------eeeeeeccCCCceeEEEec
Q psy1859          89 DGYVNIWDGFNKK-RLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK------KRLCQFHRYDTGITSLCFS  160 (162)
Q Consensus        89 d~~v~~wd~~~~~-~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~v~~v~~~  160 (162)
                      |+.|++||+++.+ .+..+.+|...+..+ |. ++.++++++.|+.|++||++.+      +++..+.+|...+..++|+
T Consensus       639 dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s  717 (793)
T PLN00181        639 DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLS  717 (793)
T ss_pred             CCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEc
Confidence            9999999998765 566777899999999 97 7889999999999999999743      5677888999999999998


Q ss_pred             CC
Q psy1859         161 YD  162 (162)
Q Consensus       161 pd  162 (162)
                      |+
T Consensus       718 ~~  719 (793)
T PLN00181        718 VS  719 (793)
T ss_pred             CC
Confidence            85

>KOG0276|consensus

Probab=99.84  E-value=1.7e-19  Score=125.99  Aligned_cols=141  Identities=18%  Similarity=0.241  Sum_probs=124.5

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      .......+.++.++|....++++-.+|.+.||+++.+.    .+.++.-...         +|++..|-+..+.+++|+.
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt----mVksfeV~~~---------PvRa~kfiaRknWiv~GsD   75 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT----MVKSFEVSEV---------PVRAAKFIARKNWIVTGSD   75 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccce----eeeeeeeccc---------chhhheeeeccceEEEecC
Confidence            33456778999999999999999999999998888754    4444444333         7999999998899999999


Q ss_pred             CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc-eeeeeeccCCCceeEEEecCC
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK-KRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |..|++|+..+++.+..+..|...+.++ .||...++.++++|-+|++||...+ .+.+++++|.-.|.+|+|+|.
T Consensus        76 D~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPk  151 (794)
T KOG0276|consen   76 DMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPK  151 (794)
T ss_pred             CceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCC
Confidence            9999999999999999999999999999 9999999999999999999999766 468889999999999999984

>KOG0313|consensus

Probab=99.83  E-value=1.5e-19  Score=119.42  Aligned_cols=134  Identities=18%  Similarity=0.225  Sum_probs=110.5

Q ss_pred             cccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeE
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV   92 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v   92 (162)
                      ...+.++.|++ ...+++++.|.+|+.||+....    .+..+.+..          .+.+++.+|..++|++|+.|..+
T Consensus       260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~----~~~~~~~~k----------sl~~i~~~~~~~Ll~~gssdr~i  324 (423)
T KOG0313|consen  260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG----LKSTLTTNK----------SLNCISYSPLSKLLASGSSDRHI  324 (423)
T ss_pred             ccceeeEEEcC-CCceEeecccceEEEEEeeccc----ceeeeecCc----------ceeEeecccccceeeecCCCCce
Confidence            34456677887 6678899999999997776643    333333333          59999999999999999999999


Q ss_pred             EEEeCCCcc---ceeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCce-eeeeeccCCCceeEEEecC
Q psy1859          93 NIWDGFNKK---RLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKK-RLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        93 ~~wd~~~~~---~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~v~~~p  161 (162)
                      ++||.+++.   ..+.+.+|.+.|..+ |+| +...|++++.|+++++||+|+.+ ++..+.+|.+.|.++.|+.
T Consensus       325 rl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~  399 (423)
T KOG0313|consen  325 RLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE  399 (423)
T ss_pred             eecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC
Confidence            999999853   355778999999999 999 45578889999999999999887 8889999999999999973

>KOG0281|consensus

Probab=99.83  E-value=1.2e-20  Score=123.98  Aligned_cols=146  Identities=16%  Similarity=0.271  Sum_probs=112.0

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceee--------------eeeeeeeecc-------------
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMK--------------YAFKCHRIKE-------------   62 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~--------------~~~~~~~~~~-------------   62 (162)
                      ..+.+.+.|+.+.  .+.+++|+.|.+|++|+++..+......              +...+.....             
T Consensus       234 ~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it  311 (499)
T KOG0281|consen  234 TGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDIT  311 (499)
T ss_pred             hcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHH
Confidence            3344444555444  5688999999999998887654211100              0000100000             


Q ss_pred             ---CcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeC
Q psy1859          63 ---DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDG  138 (162)
Q Consensus        63 ---~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~  138 (162)
                         -..+|.++|..+.|+.  +++++++.|.+|++|++.++..++.+.+|...|.|+ +  .++++++|+.|.+|++||+
T Consensus       312 ~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi  387 (499)
T KOG0281|consen  312 LRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDI  387 (499)
T ss_pred             HHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEec
Confidence               2346778999999965  599999999999999999999999999999999998 6  4889999999999999999


Q ss_pred             CCceeeeeeccCCCceeEEEecC
Q psy1859         139 FNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus       139 ~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      ..|.+++.+++|+.-|.++.|..
T Consensus       388 ~~G~cLRvLeGHEeLvRciRFd~  410 (499)
T KOG0281|consen  388 ECGACLRVLEGHEELVRCIRFDN  410 (499)
T ss_pred             cccHHHHHHhchHHhhhheeecC
Confidence            99999999999999999999863

>KOG0640|consensus

Probab=99.83  E-value=2.2e-19  Score=116.52  Aligned_cols=126  Identities=13%  Similarity=0.255  Sum_probs=105.1

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      .++++|+|+|.|.++++|+....+++|+.+.    .+.-....  +    ...|.+.|+++.+++.+++.++++.||.|+
T Consensus       217 ~~vrsiSfHPsGefllvgTdHp~~rlYdv~T----~Qcfvsan--P----d~qht~ai~~V~Ys~t~~lYvTaSkDG~Ik  286 (430)
T KOG0640|consen  217 EPVRSISFHPSGEFLLVGTDHPTLRLYDVNT----YQCFVSAN--P----DDQHTGAITQVRYSSTGSLYVTASKDGAIK  286 (430)
T ss_pred             ceeeeEeecCCCceEEEecCCCceeEEeccc----eeEeeecC--c----ccccccceeEEEecCCccEEEEeccCCcEE
Confidence            4678999999999999999999999965554    23322212  1    223778999999999999999999999999


Q ss_pred             EEeCCCccceeeee-ecc-cceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeecc
Q psy1859          94 IWDGFNKKRLCQFH-RYD-TGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR  149 (162)
Q Consensus        94 ~wd~~~~~~~~~~~-~~~-~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  149 (162)
                      +||--+++++.++. .|+ ..|.+. |..+|+|+.+++.|..+++|.+.+++++.++.+
T Consensus       287 lwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtG  345 (430)
T KOG0640|consen  287 LWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTG  345 (430)
T ss_pred             eeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEec
Confidence            99999999998886 343 467777 999999999999999999999999999888754

>PTZ00420 coronin; Provisional

Probab=99.82  E-value=1.6e-18  Score=123.94  Aligned_cols=117  Identities=21%  Similarity=0.338  Sum_probs=91.3

Q ss_pred             cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC-CCEEEEecCCCeEEEEeCCCcc--------c
Q psy1859          32 SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE-YNTFATGGSDGYVNIWDGFNKK--------R  102 (162)
Q Consensus        32 ~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~~v~~wd~~~~~--------~  102 (162)
                      +.++.+++|+..  .  ......+.+|.         .+|.+++|+|+ +.+|++|+.|+.|++||+.++.        +
T Consensus        51 G~~gvI~L~~~~--r--~~~v~~L~gH~---------~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p  117 (568)
T PTZ00420         51 GLIGAIRLENQM--R--KPPVIKLKGHT---------SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDP  117 (568)
T ss_pred             CceeEEEeeecC--C--CceEEEEcCCC---------CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccc
Confidence            445677775433  2  23444455554         48999999997 6899999999999999998642        2


Q ss_pred             eeeeeecccceeEE-EcCCCCE-EEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         103 LCQFHRYDTGITSL-FHQEYNT-FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       103 ~~~~~~~~~~v~~~-~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +..+.+|...|.++ |+|++.. +++++.|+.|++||+++++.+..+. |...|.+++|+||
T Consensus       118 ~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswspd  178 (568)
T PTZ00420        118 QCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIK  178 (568)
T ss_pred             eEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCC
Confidence            34567888999999 9998875 5788999999999999988777665 5678999999986

>KOG0639|consensus

Probab=99.82  E-value=2.1e-20  Score=127.76  Aligned_cols=137  Identities=20%  Similarity=0.308  Sum_probs=115.6

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      ..++++...|||+.|++|+.-.++.||++...+  ......+.....         ...+++.+||.++..++..||.|.
T Consensus       466 nyiRSckL~pdgrtLivGGeastlsiWDLAapT--prikaeltssap---------aCyALa~spDakvcFsccsdGnI~  534 (705)
T KOG0639|consen  466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT--PRIKAELTSSAP---------ACYALAISPDAKVCFSCCSDGNIA  534 (705)
T ss_pred             cceeeeEecCCCceEEeccccceeeeeeccCCC--cchhhhcCCcch---------hhhhhhcCCccceeeeeccCCcEE
Confidence            456778899999999999999999997776655  555445444333         588999999999999999999999


Q ss_pred             EEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          94 IWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |||+.+...++.+.+|...+.|| +++||..|.||+-|++|+-||+++++.++... ..+.|.++-.+|+
T Consensus       535 vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~  603 (705)
T KOG0639|consen  535 VWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPT  603 (705)
T ss_pred             EEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCC
Confidence            99999999999999999999999 99999999999999999999999988665543 4567777766663

>KOG4283|consensus

Probab=99.82  E-value=1.5e-18  Score=111.90  Aligned_cols=155  Identities=14%  Similarity=0.135  Sum_probs=121.6

Q ss_pred             eeeeccccccEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcccce--eeeeeeeeeeccCcccceeceEEEEecCCC-C
Q psy1859           6 QRRESSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQK--MKYAFKCHRIKEDGIEKIYPVNAISFHQEY-N   81 (162)
Q Consensus         6 ~~~~~~~~~~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~   81 (162)
                      ..+..++.+.+.++...+ .|+++++|+.||.+.+|++...+....  .+..-.+.-.......|...|..+.|-|-. -
T Consensus        36 ~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG  115 (397)
T KOG4283|consen   36 KDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG  115 (397)
T ss_pred             cceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence            456677889999999988 699999999999999977754431111  111112211222355699999999999965 7


Q ss_pred             EEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcC---CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEE
Q psy1859          82 TFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ---EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL  157 (162)
Q Consensus        82 ~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v  157 (162)
                      .|.+++.|..+++||..+-+....++ -.+.|+.- ++|   ...++++|..|-+|+++|+.+|...+.+.+|.+.|.+|
T Consensus       116 mFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV  194 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAV  194 (397)
T ss_pred             eeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEE
Confidence            88999999999999999887766664 34566666 777   45689999999999999999999999999999999999


Q ss_pred             EecC
Q psy1859         158 CFSY  161 (162)
Q Consensus       158 ~~~p  161 (162)
                      .|+|
T Consensus       195 ~Wsp  198 (397)
T KOG4283|consen  195 EWSP  198 (397)
T ss_pred             Eecc
Confidence            9998

>KOG0293|consensus

Probab=99.82  E-value=9e-19  Score=117.21  Aligned_cols=154  Identities=16%  Similarity=0.191  Sum_probs=117.6

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCccc-ce-----eeeeee------------eeeecc--------
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEM-QK-----MKYAFK------------CHRIKE--------   62 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~-~~-----~~~~~~------------~~~~~~--------   62 (162)
                      .+.+...+.+.+|.|||..+++|+.|+.+..|+.|.+... .+     .+..+.            .+....        
T Consensus       308 ~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~  387 (519)
T KOG0293|consen  308 PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV  387 (519)
T ss_pred             ccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh
Confidence            3445667789999999999999999999999887654210 00     011110            000000        


Q ss_pred             --CcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE---EcC-CCCEEEEecCCCeEEEE
Q psy1859          63 --DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL---FHQ-EYNTFATGGSDGYVNIW  136 (162)
Q Consensus        63 --~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~---~~~-~~~~l~~~~~d~~i~iw  136 (162)
                        .-.....+++++..|.+++++++--.+..+++||++..+.++.+.+|...-.-+   |-- +..++++|++|+.|+||
T Consensus       388 dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIW  467 (519)
T KOG0293|consen  388 DRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIW  467 (519)
T ss_pred             hhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEE
Confidence              122344578999999999999999999999999999888888888887654444   544 56799999999999999


Q ss_pred             eCCCceeeeeeccCCCceeEEEecCC
Q psy1859         137 DGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       137 d~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +.++++++.++.+|...|++|+|+|.
T Consensus       468 hr~sgkll~~LsGHs~~vNcVswNP~  493 (519)
T KOG0293|consen  468 HRISGKLLAVLSGHSKTVNCVSWNPA  493 (519)
T ss_pred             EccCCceeEeecCCcceeeEEecCCC
Confidence            99999999999999999999999983

>KOG0313|consensus

Probab=99.82  E-value=4.6e-19  Score=117.19  Aligned_cols=141  Identities=12%  Similarity=0.140  Sum_probs=114.8

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcc---------------------cceeeeeeeeeeeccCcccce
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPE---------------------MQKMKYAFKCHRIKEDGIEKI   68 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~   68 (162)
                      ..++..+.+++..+++..+++|+.|..+.||.......                     ...++..         ..+|.
T Consensus       190 ~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt---------l~GHt  260 (423)
T KOG0313|consen  190 RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT---------LEGHT  260 (423)
T ss_pred             cccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE---------ecccc
Confidence            36778889999999999999999999999987221110                     0011122         23567


Q ss_pred             eceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCce---ee
Q psy1859          69 YPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKK---RL  144 (162)
Q Consensus        69 ~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~---~~  144 (162)
                      ++|.++.|++ ...+.+++.|.+|+.||+..+..+..+.. .....++ .+|..++|++|+.|..|++||.|++.   ..
T Consensus       261 ~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~  338 (423)
T KOG0313|consen  261 EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVS  338 (423)
T ss_pred             cceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeE
Confidence            7999999998 66888999999999999999988877754 5678888 99999999999999999999999764   46


Q ss_pred             eeeccCCCceeEEEecC
Q psy1859         145 CQFHRYDTGITSLCFSY  161 (162)
Q Consensus       145 ~~~~~~~~~v~~v~~~p  161 (162)
                      +++.+|.+.|.++.|+|
T Consensus       339 ~s~~gH~nwVssvkwsp  355 (423)
T KOG0313|consen  339 QSLIGHKNWVSSVKWSP  355 (423)
T ss_pred             EeeecchhhhhheecCC
Confidence            67889999999999998

>KOG1273|consensus

Probab=99.82  E-value=1.3e-18  Score=113.06  Aligned_cols=131  Identities=17%  Similarity=0.269  Sum_probs=102.2

Q ss_pred             EEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEE
Q psy1859          16 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW   95 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~w   95 (162)
                      ..|+.|++.|.++++|..+|.+.||+++...    ....+.+|.         .+|.+++||++|+.|++++.|..+.+|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~----iar~lsaH~---------~pi~sl~WS~dgr~LltsS~D~si~lw   92 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR----IARMLSAHV---------RPITSLCWSRDGRKLLTSSRDWSIKLW   92 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc----hhhhhhccc---------cceeEEEecCCCCEeeeecCCceeEEE
Confidence            5789999999999999999999998888643    333344444         389999999999999999999999999


Q ss_pred             eCCCccceeeeeecccc-----------------------------------------------eeEE-EcCCCCEEEEe
Q psy1859          96 DGFNKKRLCQFHRYDTG-----------------------------------------------ITSL-FHQEYNTFATG  127 (162)
Q Consensus        96 d~~~~~~~~~~~~~~~~-----------------------------------------------v~~~-~~~~~~~l~~~  127 (162)
                      |+..|.+++++.- .++                                               ..+. |++.|+++++|
T Consensus        93 Dl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitG  171 (405)
T KOG1273|consen   93 DLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITG  171 (405)
T ss_pred             eccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEe
Confidence            9998876654420 000                                               1112 55669999999


Q ss_pred             cCCCeEEEEeCCCceeeeeeccCC-CceeEEEec
Q psy1859         128 GSDGYVNIWDGFNKKRLCQFHRYD-TGITSLCFS  160 (162)
Q Consensus       128 ~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~  160 (162)
                      ...|.+.++|..+.+++..++... ..|.++.|+
T Consensus       172 tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s  205 (405)
T KOG1273|consen  172 TSKGKLLVYDAETLECVASFRITSVQAIKQIIVS  205 (405)
T ss_pred             cCcceEEEEecchheeeeeeeechheeeeEEEEe
Confidence            999999999999998887776444 566666664

>KOG0643|consensus

Probab=99.81  E-value=3.4e-18  Score=108.77  Aligned_cols=139  Identities=19%  Similarity=0.200  Sum_probs=113.6

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC-
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-   88 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-   88 (162)
                      ..+.+.|.|+...-+.+.+++|+.|.+++||+  .++  .+.+..++...          +|..+.|+++|++++.+.. 
T Consensus        49 ~GHtGavW~~Did~~s~~liTGSAD~t~kLWD--v~t--Gk~la~~k~~~----------~Vk~~~F~~~gn~~l~~tD~  114 (327)
T KOG0643|consen   49 DGHTGAVWCCDIDWDSKHLITGSADQTAKLWD--VET--GKQLATWKTNS----------PVKRVDFSFGGNLILASTDK  114 (327)
T ss_pred             cCCCceEEEEEecCCcceeeeccccceeEEEE--cCC--CcEEEEeecCC----------eeEEEeeccCCcEEEEEehh
Confidence            34566778888888899999999999999955  444  44555544433          6999999999988887754 


Q ss_pred             ----CCeEEEEeCCC-------ccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCce-eeeeeccCCCcee
Q psy1859          89 ----DGYVNIWDGFN-------KKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKK-RLCQFHRYDTGIT  155 (162)
Q Consensus        89 ----d~~v~~wd~~~-------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~  155 (162)
                          .+.|.++|++.       .+++..+..+.+.++.+ |.|-++++++|..||.|.+||+++++ .+..-+.|...|+
T Consensus       115 ~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~In  194 (327)
T KOG0643|consen  115 QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKIN  194 (327)
T ss_pred             hcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccc
Confidence                37899999983       35677888888889999 99999999999999999999999985 4555678999999


Q ss_pred             EEEecCC
Q psy1859         156 SLCFSYD  162 (162)
Q Consensus       156 ~v~~~pd  162 (162)
                      +++|+||
T Consensus       195 d~q~s~d  201 (327)
T KOG0643|consen  195 DLQFSRD  201 (327)
T ss_pred             cccccCC
Confidence            9999987

>KOG0289|consensus

Probab=99.81  E-value=1.2e-18  Score=117.10  Aligned_cols=144  Identities=22%  Similarity=0.247  Sum_probs=116.9

Q ss_pred             eeeeccccccEEE---EEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCE
Q psy1859           6 QRRESSLKFQTRC---IKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT   82 (162)
Q Consensus         6 ~~~~~~~~~~~~~---i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~   82 (162)
                      .+....++||...   +.++|+...+++++.|..|+||..-..+    .......         |..+|+.+..+|.|.+
T Consensus       251 ~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s----~~~~~~~---------h~~~V~~ls~h~tgeY  317 (506)
T KOG0289|consen  251 NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS----EPTSSRP---------HEEPVTGLSLHPTGEY  317 (506)
T ss_pred             hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc----Ccccccc---------ccccceeeeeccCCcE
Confidence            3444556676644   5578888889999999999997554432    2222233         4448999999999999


Q ss_pred             EEEecCCCeEEEEeCCCccceeeeeec--ccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEe
Q psy1859          83 FATGGSDGYVNIWDGFNKKRLCQFHRY--DTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF  159 (162)
Q Consensus        83 l~~~~~d~~v~~wd~~~~~~~~~~~~~--~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~  159 (162)
                      |++++.|+.+...|++++..+......  .-.+++. |||||.+|.+|..|+.++|||++++..+..|.+|.++|..|+|
T Consensus       318 llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~F  397 (506)
T KOG0289|consen  318 LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISF  397 (506)
T ss_pred             EEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEe
Confidence            999999999999999999887766542  2347777 9999999999999999999999999999999999999999999


Q ss_pred             cCC
Q psy1859         160 SYD  162 (162)
Q Consensus       160 ~pd  162 (162)
                      +.+
T Consensus       398 sEN  400 (506)
T KOG0289|consen  398 SEN  400 (506)
T ss_pred             ccC
Confidence            864

>KOG0310|consensus

Probab=99.81  E-value=3.3e-18  Score=116.12  Aligned_cols=142  Identities=20%  Similarity=0.239  Sum_probs=116.1

Q ss_pred             eeeeccccccEEEEEEeeC-CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEE
Q psy1859           6 QRRESSLKFQTRCIKCFPN-KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA   84 (162)
Q Consensus         6 ~~~~~~~~~~~~~i~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~   84 (162)
                      +.-.+.++..++|.+|+|. +..+++|+.||.|++|+....+   ..+.++.          |..+|..+.+-|.|.+++
T Consensus       146 ~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~eln----------hg~pVe~vl~lpsgs~ia  212 (487)
T KOG0310|consen  146 QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELN----------HGCPVESVLALPSGSLIA  212 (487)
T ss_pred             EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC---ceeEEec----------CCCceeeEEEcCCCCEEE
Confidence            3345677888999999995 5588999999999997665442   3333332          444899999999999998


Q ss_pred             EecCCCeEEEEeCCC-ccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          85 TGGSDGYVNIWDGFN-KKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        85 ~~~~d~~v~~wd~~~-~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +++ ...+++||+-+ ++.+..+..|...|+|+ +..++..|++++-|+.+++||+.+-+.+..+. .+++|.+++.+||
T Consensus       213 sAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~d  290 (487)
T KOG0310|consen  213 SAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPD  290 (487)
T ss_pred             EcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCC
Confidence            886 45799999996 45666666799999999 98899999999999999999998888888886 6779999999985

>KOG2394|consensus

Probab=99.81  E-value=1.1e-18  Score=120.05  Aligned_cols=148  Identities=18%  Similarity=0.254  Sum_probs=112.8

Q ss_pred             ccEEEEEEeeC-CCeEEEEcCCCcEEEEEecCCcccceeee-------eeeeeeecc--------CcccceeceEEEEec
Q psy1859          14 FQTRCIKCFPN-KQGYVLSSIEGRAAVEYLDTGPEMQKMKY-------AFKCHRIKE--------DGIEKIYPVNAISFH   77 (162)
Q Consensus        14 ~~~~~i~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~-------~~~~~~~~~--------~~~~~~~~v~~~~~~   77 (162)
                      ..++|+.|-|. ...|+++-.+|.+.+++.....+.....+       .+..+....        ...--...|..++|+
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS  299 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS  299 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence            56789999995 45667778889999865422111000000       011111000        001112278899999


Q ss_pred             CCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeE
Q psy1859          78 QEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITS  156 (162)
Q Consensus        78 p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  156 (162)
                      |||++||+.+.||.++|||..+.+++..++.+-+...|+ |||||+|+++|++|-.|.||.+..++.+.+-++|++.|..
T Consensus       300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~  379 (636)
T KOG2394|consen  300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSV  379 (636)
T ss_pred             CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceee
Confidence            999999999999999999999988888887788889999 9999999999999999999999999999999999999999


Q ss_pred             EEecC
Q psy1859         157 LCFSY  161 (162)
Q Consensus       157 v~~~p  161 (162)
                      |+|.|
T Consensus       380 VaFDp  384 (636)
T KOG2394|consen  380 VAFDP  384 (636)
T ss_pred             Eeecc
Confidence            99986

>KOG0305|consensus

Probab=99.81  E-value=2.9e-18  Score=119.17  Aligned_cols=137  Identities=17%  Similarity=0.258  Sum_probs=113.9

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEec--C
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGG--S   88 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~--~   88 (162)
                      +...+..+.|+++++++++|+.|+.+.||+.  ..  ....+.+..|..         +|.+++|+|.. .+||+|+  .
T Consensus       300 H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~--~~--~~p~~~~~~H~a---------AVKA~awcP~q~~lLAsGGGs~  366 (484)
T KOG0305|consen  300 HRQEVCGLKWSPDGNQLASGGNDNVVFIWDG--LS--PEPKFTFTEHTA---------AVKALAWCPWQSGLLATGGGSA  366 (484)
T ss_pred             ccceeeeeEECCCCCeeccCCCccceEeccC--CC--ccccEEEeccce---------eeeEeeeCCCccCceEEcCCCc
Confidence            4445566889999999999999999999665  33  445555555554         89999999976 7888864  7


Q ss_pred             CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEe--cCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATG--GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |+.|++||..+++.+..+. ....|..+ |++..+.++++  ..++.|.||+..+.+.+..+.+|...|..++++||
T Consensus       367 D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPd  442 (484)
T KOG0305|consen  367 DRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPD  442 (484)
T ss_pred             ccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCC
Confidence            9999999999998888775 56889999 99988766665  35679999999999999999999999999999997

>KOG1274|consensus

Probab=99.81  E-value=2.4e-18  Score=124.37  Aligned_cols=149  Identities=11%  Similarity=0.165  Sum_probs=112.1

Q ss_pred             ceeeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEE
Q psy1859           5 MQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA   84 (162)
Q Consensus         5 ~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~   84 (162)
                      .++....+++++.++.++|++++|++.+.||.|.+|+++...    ...++.+-.. .++......+.-++|+|++..|+
T Consensus       130 ~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~----~~~tl~~v~k-~n~~~~s~i~~~~aW~Pk~g~la  204 (933)
T KOG1274|consen  130 QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI----LSKTLTGVDK-DNEFILSRICTRLAWHPKGGTLA  204 (933)
T ss_pred             hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccch----hhhhcccCCc-cccccccceeeeeeecCCCCeEE
Confidence            345567789999999999999999999999999997776432    2222222110 01111233688999999998888


Q ss_pred             EecCCCeEEEEeCCCccceeeeee--cccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          85 TGGSDGYVNIWDGFNKKRLCQFHR--YDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        85 ~~~~d~~v~~wd~~~~~~~~~~~~--~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      ....|+.|.+|+...+.....+..  +...+..+ |+|+|+|+|+++-||.|.|||+.+-.   + ......|++++|-|
T Consensus       205 ~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~---~-~~~~~~Vc~~aw~p  280 (933)
T KOG1274|consen  205 VPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE---R-HEFKRAVCCEAWKP  280 (933)
T ss_pred             eeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch---h-ccccceeEEEecCC
Confidence            888999999999999988777753  33447777 99999999999999999999998611   1 23345788888877


Q ss_pred             C
Q psy1859         162 D  162 (162)
Q Consensus       162 d  162 (162)
                      +
T Consensus       281 ~  281 (933)
T KOG1274|consen  281 N  281 (933)
T ss_pred             C
Confidence            5

>KOG0282|consensus

Probab=99.81  E-value=1.7e-19  Score=122.30  Aligned_cols=120  Identities=21%  Similarity=0.302  Sum_probs=103.0

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCC
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDG   90 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~   90 (162)
                      +...|+.++|+.+|..|++++.|+.+++  ||.++  .+....+....          .++++.|+|++ +.|++|+.|+
T Consensus       257 H~k~Vrd~~~s~~g~~fLS~sfD~~lKl--wDtET--G~~~~~f~~~~----------~~~cvkf~pd~~n~fl~G~sd~  322 (503)
T KOG0282|consen  257 HRKPVRDASFNNCGTSFLSASFDRFLKL--WDTET--GQVLSRFHLDK----------VPTCVKFHPDNQNIFLVGGSDK  322 (503)
T ss_pred             chhhhhhhhccccCCeeeeeecceeeee--ecccc--ceEEEEEecCC----------CceeeecCCCCCcEEEEecCCC
Confidence            4455677899999999999999999999  55544  44444444333          58999999998 9999999999


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeee
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLC  145 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  145 (162)
                      .|+.||+++++.++++..|-+.+..+ |-++|++++++++|++++||+.+.+-.+.
T Consensus       323 ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik  378 (503)
T KOG0282|consen  323 KIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK  378 (503)
T ss_pred             cEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch
Confidence            99999999999999999999999999 99999999999999999999998775544

>KOG0300|consensus

Probab=99.80  E-value=1.8e-19  Score=117.38  Aligned_cols=153  Identities=16%  Similarity=0.128  Sum_probs=121.1

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecC----Ccccc--------eeee------------eeeeeeec---c
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDT----GPEMQ--------KMKY------------AFKCHRIK---E   62 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~----~~~~~--------~~~~------------~~~~~~~~---~   62 (162)
                      ..+.+.+.+|.|++.+..+++++.|++..||.+..    .++..        +...            ...+|...   .
T Consensus       187 ~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~  266 (481)
T KOG0300|consen  187 TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLM  266 (481)
T ss_pred             cccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeee
Confidence            44567778999999999999999999999987321    11000        0000            00000000   0


Q ss_pred             CcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc
Q psy1859          63 DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK  141 (162)
Q Consensus        63 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~  141 (162)
                      ...+|.+.|.+..|-..|+.+++++.|.+-.+||++++.++..+.+|....+.+ -+|..+++++++.|.+.++||++..
T Consensus       267 ~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea  346 (481)
T KOG0300|consen  267 RLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA  346 (481)
T ss_pred             eeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh
Confidence            235577899999999999999999999999999999999999999999999999 9999999999999999999999843


Q ss_pred             -eeeeeeccCCCceeEEEecCC
Q psy1859         142 -KRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       142 -~~~~~~~~~~~~v~~v~~~pd  162 (162)
                       ..+..|++|...|+++.|..|
T Consensus       347 I~sV~VFQGHtdtVTS~vF~~d  368 (481)
T KOG0300|consen  347 IQSVAVFQGHTDTVTSVVFNTD  368 (481)
T ss_pred             cceeeeecccccceeEEEEecC
Confidence             357889999999999999764

>KOG0283|consensus

Probab=99.80  E-value=1.3e-18  Score=124.37  Aligned_cols=131  Identities=20%  Similarity=0.193  Sum_probs=102.7

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCeE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYV   92 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v   92 (162)
                      +.|..|+|+.+ ++|++++-|.+|+||.....+  .-..+.            |.+.|+|++|+|-. ++|++|+-|+.+
T Consensus       370 ~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~--CL~~F~------------HndfVTcVaFnPvDDryFiSGSLD~Kv  434 (712)
T KOG0283|consen  370 ADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE--CLKVFS------------HNDFVTCVAFNPVDDRYFISGSLDGKV  434 (712)
T ss_pred             hhheecccccC-CeeEeccccccEEeecCCCcc--eeeEEe------------cCCeeEEEEecccCCCcEeecccccce
Confidence            34466889985 578999999999997665433  334443            44489999999965 999999999999


Q ss_pred             EEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec---------cCCCceeEEEecC
Q psy1859          93 NIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH---------RYDTGITSLCFSY  161 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---------~~~~~v~~v~~~p  161 (162)
                      +||++...+.+.-. ....-|+++ |.|||++.+.|+.+|..++|+....+.+....         .|. .|+.+.|.|
T Consensus       435 RiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p  511 (712)
T KOG0283|consen  435 RLWSISDKKVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFP  511 (712)
T ss_pred             EEeecCcCeeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecC
Confidence            99999876554433 344789999 99999999999999999999998777654432         233 799999986

>KOG1446|consensus

Probab=99.80  E-value=9.2e-18  Score=108.61  Aligned_cols=148  Identities=19%  Similarity=0.106  Sum_probs=109.0

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeee----------eee----------------------
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFK----------CHR----------------------   59 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~----------~~~----------------------   59 (162)
                      ..+++.++.|+++|..+++++.|..++||+.  .+++.......+          -|.                      
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~--~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN   90 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDS--LSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN   90 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEc--CCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence            6788999999999999999999999999553  332221111100          000                      


Q ss_pred             -eccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEEEcCCCCEEEEecCCCeEEEEeC
Q psy1859          60 -IKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDG  138 (162)
Q Consensus        60 -~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~  138 (162)
                       -.+-..+|...|.++..+|.+..+++++.|++|++||++..++.-.+.....++.+ |+|+|-++|++.....|++||+
T Consensus        91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~A-fDp~GLifA~~~~~~~IkLyD~  169 (311)
T KOG1446|consen   91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAA-FDPEGLIFALANGSELIKLYDL  169 (311)
T ss_pred             ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCccee-ECCCCcEEEEecCCCeEEEEEe
Confidence             00134678889999999999999999999999999999987776665544333322 8999999999998889999999


Q ss_pred             CCc--eeeeeec---cCCCceeEEEecCC
Q psy1859         139 FNK--KRLCQFH---RYDTGITSLCFSYD  162 (162)
Q Consensus       139 ~~~--~~~~~~~---~~~~~v~~v~~~pd  162 (162)
                      |.-  .+..++.   ......+.+.||||
T Consensus       170 Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d  198 (311)
T KOG1446|consen  170 RSFDKGPFTTFSITDNDEAEWTDLEFSPD  198 (311)
T ss_pred             cccCCCCceeEccCCCCccceeeeEEcCC
Confidence            854  2333332   33557889999997

>KOG0303|consensus

Probab=99.80  E-value=8.5e-19  Score=116.67  Aligned_cols=133  Identities=17%  Similarity=0.149  Sum_probs=110.1

Q ss_pred             ccccccEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcc---cceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEE
Q psy1859          10 SSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPE---MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFA   84 (162)
Q Consensus        10 ~~~~~~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~   84 (162)
                      ..+++++..++|+| +...+++|+.|.+|.||.+-....   ....+..+.+|..         .|.-++|||.. +.|+
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~r---------rVg~V~wHPtA~NVLl  148 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQR---------RVGLVQWHPTAPNVLL  148 (472)
T ss_pred             cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecce---------eEEEEeecccchhhHh
Confidence            34567778899999 566788999999999987643321   1223445566554         79999999986 8899


Q ss_pred             EecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCC
Q psy1859          85 TGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT  152 (162)
Q Consensus        85 ~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  152 (162)
                      +++.|..|.+||+.+++.+..+. |...|.++ |+.||.+++|.+.|..|+|||.++++.+..-.+|.+
T Consensus       149 sag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG  216 (472)
T KOG0303|consen  149 SAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG  216 (472)
T ss_pred             hccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccC
Confidence            99999999999999999888887 89999999 999999999999999999999999998887766765

>KOG0267|consensus

Probab=99.80  E-value=1.5e-19  Score=127.79  Aligned_cols=137  Identities=23%  Similarity=0.312  Sum_probs=120.2

Q ss_pred             cccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeE
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV   92 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v   92 (162)
                      ...+..+.|+|.+.+++.|+.|+..++|  |...  ..+.+.+++|..         .|..++|+|+|++++.++.|..+
T Consensus       112 ~~~~~sv~f~P~~~~~a~gStdtd~~iw--D~Rk--~Gc~~~~~s~~~---------vv~~l~lsP~Gr~v~~g~ed~tv  178 (825)
T KOG0267|consen  112 LLNITSVDFHPYGEFFASGSTDTDLKIW--DIRK--KGCSHTYKSHTR---------VVDVLRLSPDGRWVASGGEDNTV  178 (825)
T ss_pred             ccCcceeeeccceEEeccccccccceeh--hhhc--cCceeeecCCcc---------eeEEEeecCCCceeeccCCccee
Confidence            3445678899999999999999999994  5443  445666666544         79999999999999999999999


Q ss_pred             EEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          93 NIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ++||+..|+.+..|..|...+..+ |+|..-++++|+.|+++++||+++...+.........|.+..|+||
T Consensus       179 ki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~  249 (825)
T KOG0267|consen  179 KIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPD  249 (825)
T ss_pred             eeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCC
Confidence            999999999999999999999999 9999999999999999999999988888877777889999999986

>KOG1332|consensus

Probab=99.80  E-value=4.5e-19  Score=111.43  Aligned_cols=147  Identities=17%  Similarity=0.150  Sum_probs=116.4

Q ss_pred             cceeeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccc-eeeeeeeeeeeccCcccceeceEEEEe-cC-CC
Q psy1859           4 IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQ-KMKYAFKCHRIKEDGIEKIYPVNAISF-HQ-EY   80 (162)
Q Consensus         4 ~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~-~p-~~   80 (162)
                      +++++...++..|..+...-.|++|++++.|++|+|+....+.  . ....++.+|..         +|..++| +| .|
T Consensus         2 ~~q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~--~s~ll~~L~Gh~G---------PVwqv~wahPk~G   70 (299)
T KOG1332|consen    2 VMQTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG--QSKLLAELTGHSG---------PVWKVAWAHPKFG   70 (299)
T ss_pred             cceehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC--CceeeeEecCCCC---------CeeEEeecccccC
Confidence            4566777777777777777779999999999999995444332  3 55666677665         8999999 55 57


Q ss_pred             CEEEEecCCCeEEEEeCCCccc--eeeeeecccceeEE-EcC--CCCEEEEecCCCeEEEEeCCCc-e--eeeeeccCCC
Q psy1859          81 NTFATGGSDGYVNIWDGFNKKR--LCQFHRYDTGITSL-FHQ--EYNTFATGGSDGYVNIWDGFNK-K--RLCQFHRYDT  152 (162)
Q Consensus        81 ~~l~~~~~d~~v~~wd~~~~~~--~~~~~~~~~~v~~~-~~~--~~~~l~~~~~d~~i~iwd~~~~-~--~~~~~~~~~~  152 (162)
                      .+|++++.||.|.||.-.+++.  ......|...++++ |.|  -|-.|+.++.||.|.|.+.++. .  .......|+-
T Consensus        71 ~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~  150 (299)
T KOG1332|consen   71 TILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI  150 (299)
T ss_pred             cEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence            9999999999999999888743  44666889999999 888  5678999999999999998754 1  2233457999


Q ss_pred             ceeEEEecC
Q psy1859         153 GITSLCFSY  161 (162)
Q Consensus       153 ~v~~v~~~p  161 (162)
                      .|++++|+|
T Consensus       151 GvnsVswap  159 (299)
T KOG1332|consen  151 GVNSVSWAP  159 (299)
T ss_pred             ccceeeecC
Confidence            999999998

>KOG0316|consensus

Probab=99.80  E-value=2.7e-18  Score=107.61  Aligned_cols=137  Identities=20%  Similarity=0.290  Sum_probs=113.6

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      .+.+...+..++.+.|...|++|+.|..+.+|+.+  +  .+....+.+|..         .|..++|+.+...+++|+.
T Consensus        55 YsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~--T--Gkv~Rr~rgH~a---------qVNtV~fNeesSVv~Sgsf  121 (307)
T KOG0316|consen   55 YSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN--T--GKVDRRFRGHLA---------QVNTVRFNEESSVVASGSF  121 (307)
T ss_pred             ecCCCceeeeccccccccccccCCCCceEEEEEcc--c--Ceeeeecccccc---------eeeEEEecCcceEEEeccc
Confidence            44555667778888899999999999999995544  4  566667777655         7999999999999999999


Q ss_pred             CCeEEEEeCCCc--cceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          89 DGYVNIWDGFNK--KRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        89 d~~v~~wd~~~~--~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |..+++||-++.  ++++.+......|.++ .+  +..+++|+-||+++.||++.|+...-+-  ..+|++++|++|
T Consensus       122 D~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d  194 (307)
T KOG0316|consen  122 DSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKD  194 (307)
T ss_pred             cceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCC
Confidence            999999999874  6788888777888887 64  5679999999999999999998776554  447999999986

>KOG0274|consensus

Probab=99.80  E-value=7.4e-18  Score=120.12  Aligned_cols=135  Identities=16%  Similarity=0.173  Sum_probs=116.0

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ..+.+.+.++++...+..+++|+.|.++++|+  ..+  ......+.+|..         .|.++...+  ..+++|+.|
T Consensus       246 ~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd--~~s--g~C~~~l~gh~s---------tv~~~~~~~--~~~~sgs~D  310 (537)
T KOG0274|consen  246 VGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD--CST--GECTHSLQGHTS---------SVRCLTIDP--FLLVSGSRD  310 (537)
T ss_pred             cCCCCCceeEEEecCCCEEEEEecCCcEEeEe--cCC--CcEEEEecCCCc---------eEEEEEccC--ceEeeccCC
Confidence            44556677888887788999999999999966  444  566667777765         688887644  678889999


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      .+|++|++.++..+..+.+|..+|.++ .+  +.++++|+.|++|++||+.+++++..+.+|...|+++.+.+
T Consensus       311 ~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~  381 (537)
T KOG0274|consen  311 NTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS  381 (537)
T ss_pred             ceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecC
Confidence            999999999999999999999999999 76  88999999999999999999999999999999999998765

>KOG0294|consensus

Probab=99.80  E-value=4.5e-18  Score=110.30  Aligned_cols=134  Identities=14%  Similarity=0.128  Sum_probs=104.8

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC--CEEEEecCC
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY--NTFATGGSD   89 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~~~~~d   89 (162)
                      +.+.+++++++  +.++++|+.|-+|+||  |..+  ......+..         |.+.|+++.|.+.-  ..|++|+.|
T Consensus        42 H~~sitavAVs--~~~~aSGssDetI~IY--Dm~k--~~qlg~ll~---------HagsitaL~F~~~~S~shLlS~sdD  106 (362)
T KOG0294|consen   42 HAGSITALAVS--GPYVASGSSDETIHIY--DMRK--RKQLGILLS---------HAGSITALKFYPPLSKSHLLSGSDD  106 (362)
T ss_pred             cccceeEEEec--ceeEeccCCCCcEEEE--eccc--hhhhcceec---------cccceEEEEecCCcchhheeeecCC
Confidence            44566677765  8999999999999995  4433  233333333         44589999998865  389999999


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      |.|.+|+...+.++..++.|.+.|+.+ .+|.+++-++.+.|+.++.||+-.|+.-..+.. ...-+.|.|+|
T Consensus       107 G~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~  178 (362)
T KOG0294|consen  107 GHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSP  178 (362)
T ss_pred             CcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcC
Confidence            999999999999999999999999999 999999999999999999999988875433331 11234477776

>KOG0269|consensus

Probab=99.79  E-value=4.6e-19  Score=126.10  Aligned_cols=135  Identities=23%  Similarity=0.298  Sum_probs=111.8

Q ss_pred             EEEEee-CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCeEEEE
Q psy1859          18 CIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVNIW   95 (162)
Q Consensus        18 ~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v~~w   95 (162)
                      .+.|+. +.++|++++..|.|.+|+++... ..+....|..|..         .+.++.|++.. ++|++|+.||.|++|
T Consensus        92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~-rnk~l~~f~EH~R---------s~~~ldfh~tep~iliSGSQDg~vK~~  161 (839)
T KOG0269|consen   92 DVKWGQLYSNLIATCSTNGVISVWDLNKSI-RNKLLTVFNEHER---------SANKLDFHSTEPNILISGSQDGTVKCW  161 (839)
T ss_pred             hcccccchhhhheeecCCCcEEEEecCccc-cchhhhHhhhhcc---------ceeeeeeccCCccEEEecCCCceEEEE
Confidence            366774 46789999999999997776532 1223334455544         79999999976 899999999999999


Q ss_pred             eCCCccceeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCce-eeeeeccCCCceeEEEecCC
Q psy1859          96 DGFNKKRLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKK-RLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        96 d~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |++..+-..++.+....|.++ |+| .+.+++++.+.|.+.+||+|... +...+.+|.++|.++.|+|+
T Consensus       162 DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn  231 (839)
T KOG0269|consen  162 DLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN  231 (839)
T ss_pred             eeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC
Confidence            999988888888888899999 999 77899999999999999998754 57778899999999999996

>KOG0641|consensus

Probab=99.79  E-value=2.3e-17  Score=103.19  Aligned_cols=147  Identities=12%  Similarity=0.044  Sum_probs=112.8

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      .+.+.+||.++- +=++-.+++|+.|.+|++|++.....-...-..+....      -....|.+++..|.|++|++|..
T Consensus       179 ~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g------lessavaav~vdpsgrll~sg~~  251 (350)
T KOG0641|consen  179 LSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG------LESSAVAAVAVDPSGRLLASGHA  251 (350)
T ss_pred             ecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCC------cccceeEEEEECCCcceeeeccC
Confidence            455667776643 23478899999999999988876541111111111111      12247999999999999999999


Q ss_pred             CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc----eeeeeeccCCCceeEEEecCC
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK----KRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |....+||++.+++++.+..|...|.++ |+|...|+.+++.|..|++=|+...    -++.+...|.+.+-.+.|+|.
T Consensus       252 dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~  330 (350)
T KOG0641|consen  252 DSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ  330 (350)
T ss_pred             CCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCc
Confidence            9999999999999999999999999999 9999999999999999999998532    123344568888888899874

>KOG0278|consensus

Probab=99.79  E-value=6.1e-18  Score=106.88  Aligned_cols=132  Identities=17%  Similarity=0.200  Sum_probs=102.5

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeecc---------------------------
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE---------------------------   62 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~---------------------------   62 (162)
                      +...+.|+.+.|....+.+++++.|++|++|+....+  ....+.++.+....                           
T Consensus       140 ~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt--~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~  217 (334)
T KOG0278|consen  140 SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT--EVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGL  217 (334)
T ss_pred             cCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc--EEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccc
Confidence            4456778889999988889999999999997754332  22222211111000                           


Q ss_pred             -CcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeee-eecccceeEE-EcCCCCEEEEecCCCeEEEEeCC
Q psy1859          63 -DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF-HRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGF  139 (162)
Q Consensus        63 -~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~-~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~  139 (162)
                       +..+.+..|.+..++|+...+++|+.|..++.||..++..+..+ ++|.++|.++ |+|+|...++|++||+|++|...
T Consensus       218 lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  218 LKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             eeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence             22334556888999999999999999999999999999888876 7899999999 99999999999999999999987


Q ss_pred             Ccee
Q psy1859         140 NKKR  143 (162)
Q Consensus       140 ~~~~  143 (162)
                      .++.
T Consensus       298 ~~~~  301 (334)
T KOG0278|consen  298 PGKT  301 (334)
T ss_pred             CCCc
Confidence            6553

>KOG0265|consensus

Probab=99.79  E-value=7.3e-18  Score=108.63  Aligned_cols=137  Identities=14%  Similarity=0.211  Sum_probs=115.1

Q ss_pred             cccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeE
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV   92 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v   92 (162)
                      +.+++++.|.-++..+.+|+-|+.|++|+  ..+  ....+.+.+|..         +|+.+..+|+|..+++-+.|..+
T Consensus       174 kyqltAv~f~d~s~qv~sggIdn~ikvWd--~r~--~d~~~~lsGh~D---------tIt~lsls~~gs~llsnsMd~tv  240 (338)
T KOG0265|consen  174 KYQLTAVGFKDTSDQVISGGIDNDIKVWD--LRK--NDGLYTLSGHAD---------TITGLSLSRYGSFLLSNSMDNTV  240 (338)
T ss_pred             ceeEEEEEecccccceeeccccCceeeec--ccc--CcceEEeecccC---------ceeeEEeccCCCccccccccceE
Confidence            67889999999999999999999999955  433  445666677765         79999999999999999999999


Q ss_pred             EEEeCCCc----cceeeeeec--cccee--EE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          93 NIWDGFNK----KRLCQFHRY--DTGIT--SL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        93 ~~wd~~~~----~~~~~~~~~--~~~v~--~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ++||++..    +++..+.++  .-..+  .+ |+|+++++-+|+.|..+++||......+..+.+|.+.|.++.|+|.
T Consensus       241 rvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~  319 (338)
T KOG0265|consen  241 RVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPT  319 (338)
T ss_pred             EEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCC
Confidence            99999864    235555443  22333  44 9999999999999999999999888899999999999999999984

>KOG2096|consensus

Probab=99.78  E-value=4.9e-18  Score=110.59  Aligned_cols=151  Identities=11%  Similarity=0.088  Sum_probs=111.1

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccc-------------e-------------------eeeeeeee
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQ-------------K-------------------MKYAFKCH   58 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~-------------~-------------------~~~~~~~~   58 (162)
                      .+++.+++++|+.||++|++++.|+.|+||+.+.-....             +                   .+..++..
T Consensus        84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~  163 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV  163 (420)
T ss_pred             ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence            345678999999999999999999999998864322100             0                   00000000


Q ss_pred             eec--------------cCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCE
Q psy1859          59 RIK--------------EDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNT  123 (162)
Q Consensus        59 ~~~--------------~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~  123 (162)
                      ...              +....|...+..+-....+.+|++++.|..|.+|+++ |+.+..+......-+.. .||+|++
T Consensus       164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRF  242 (420)
T KOG2096|consen  164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRF  242 (420)
T ss_pred             ecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcE
Confidence            000              0334466677777777777899999999999999998 88888887666666666 9999999


Q ss_pred             EEEecCCCeEEEEeCC---Cce-----eeeeeccCCCceeEEEecCC
Q psy1859         124 FATGGSDGYVNIWDGF---NKK-----RLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       124 l~~~~~d~~i~iwd~~---~~~-----~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +++++.-..+++|.+-   .|.     .+-.+.+|.+.|...+|+|+
T Consensus       243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~  289 (420)
T KOG2096|consen  243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS  289 (420)
T ss_pred             EEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC
Confidence            9999999999999864   221     34456799999999999986

>KOG0278|consensus

Probab=99.78  E-value=1.6e-18  Score=109.46  Aligned_cols=136  Identities=15%  Similarity=0.190  Sum_probs=105.1

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      --+++++|+.|.++|++|+.+..++|  ++.++.+.. ...+.+|+         ..|..+-|....+.|++++.|+.|+
T Consensus       101 hivk~~af~~ds~~lltgg~ekllrv--fdln~p~Ap-p~E~~ght---------g~Ir~v~wc~eD~~iLSSadd~tVR  168 (334)
T KOG0278|consen  101 HIVKAVAFSQDSNYLLTGGQEKLLRV--FDLNRPKAP-PKEISGHT---------GGIRTVLWCHEDKCILSSADDKTVR  168 (334)
T ss_pred             heeeeEEecccchhhhccchHHHhhh--hhccCCCCC-chhhcCCC---------CcceeEEEeccCceEEeeccCCceE
Confidence            34588999999999999999999999  444432222 22334444         4899999999889999999999999


Q ss_pred             EEeCCCccceeeeeeccc----------------------------------------ceeEE-EcCCCCEEEEecCCCe
Q psy1859          94 IWDGFNKKRLCQFHRYDT----------------------------------------GITSL-FHQEYNTFATGGSDGY  132 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~----------------------------------------~v~~~-~~~~~~~l~~~~~d~~  132 (162)
                      +||.++++.++.+.- ..                                        .|.+. .+|+...++.|+.|..
T Consensus       169 LWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~  247 (334)
T KOG0278|consen  169 LWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFK  247 (334)
T ss_pred             EEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceE
Confidence            999999876665521 11                                        23344 6677778888888888


Q ss_pred             EEEEeCCCceeeeee-ccCCCceeEEEecCC
Q psy1859         133 VNIWDGFNKKRLCQF-HRYDTGITSLCFSYD  162 (162)
Q Consensus       133 i~iwd~~~~~~~~~~-~~~~~~v~~v~~~pd  162 (162)
                      ++.||..++..+..+ ++|.++|.|+.|+||
T Consensus       248 ~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd  278 (334)
T KOG0278|consen  248 VYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD  278 (334)
T ss_pred             EEEEeccCCceeeecccCCCCceEEEEECCC
Confidence            888888888877765 789999999999997

>KOG0288|consensus

Probab=99.78  E-value=1.2e-17  Score=111.71  Aligned_cols=144  Identities=17%  Similarity=0.170  Sum_probs=102.9

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeecc-------------------------------
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE-------------------------------   62 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~-------------------------------   62 (162)
                      +.+..+.+.++++.+++++.|+.+++|+.+..    +...++.+|....                               
T Consensus       220 g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~----r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C  295 (459)
T KOG0288|consen  220 GNITSIDFDSDNKHVIAASNDKNLRLWNVDSL----RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC  295 (459)
T ss_pred             CCcceeeecCCCceEEeecCCCceeeeeccch----hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe
Confidence            44889999999999999999999999876542    2222333332211                               


Q ss_pred             ----------------------------------------CcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccc
Q psy1859          63 ----------------------------------------DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR  102 (162)
Q Consensus        63 ----------------------------------------~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~  102 (162)
                                                              ......+.|+++..++++..+++++.|..+.+.|+++...
T Consensus       296 ~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI  375 (459)
T KOG0288|consen  296 SKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI  375 (459)
T ss_pred             eccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccE
Confidence                                                    0111222667777777777777777777777777776554


Q ss_pred             eeeeeec----ccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCC--ceeEEEecC
Q psy1859         103 LCQFHRY----DTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT--GITSLCFSY  161 (162)
Q Consensus       103 ~~~~~~~----~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~v~~~p  161 (162)
                      ...+...    ....+.+ |||++.|+++|+.||.|+||++.++++...+....+  .|++++|+|
T Consensus       376 ~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~  441 (459)
T KOG0288|consen  376 RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP  441 (459)
T ss_pred             EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC
Confidence            4444321    2346667 999999999999999999999999999888765443  599999987

>KOG2445|consensus

Probab=99.78  E-value=2.6e-17  Score=106.53  Aligned_cols=150  Identities=13%  Similarity=0.126  Sum_probs=112.8

Q ss_pred             ccceeeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEe-cCC-C
Q psy1859           3 YIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF-HQE-Y   80 (162)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~p~-~   80 (162)
                      ..++.+.+.++.-+.++.|.+.|+++++|+.|++++||+++..++.......-+.|         .+.|-.+.| +|. |
T Consensus         3 ~s~~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah---------~~Si~rV~WAhPEfG   73 (361)
T KOG2445|consen    3 FSMAPIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAH---------DGSIWRVVWAHPEFG   73 (361)
T ss_pred             ccccccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEec---------CCcEEEEEecCcccc
Confidence            34556677788889999999999999999999999998876555444444444444         447999999 443 6


Q ss_pred             CEEEEecCCCeEEEEeCCC---------ccceeeeeecccceeEE-EcC--CCCEEEEecCCCeEEEEeCCCcee-----
Q psy1859          81 NTFATGGSDGYVNIWDGFN---------KKRLCQFHRYDTGITSL-FHQ--EYNTFATGGSDGYVNIWDGFNKKR-----  143 (162)
Q Consensus        81 ~~l~~~~~d~~v~~wd~~~---------~~~~~~~~~~~~~v~~~-~~~--~~~~l~~~~~d~~i~iwd~~~~~~-----  143 (162)
                      +.+++++.|+.+.||.-..         .....++....+.++++ |.|  -|-.|++++.||.+|||+.-....     
T Consensus        74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~  153 (361)
T KOG2445|consen   74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT  153 (361)
T ss_pred             ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence            9999999999999997521         22344666778899999 999  677899999999999998754322     


Q ss_pred             -eeeec-------cCCCceeEEEecC
Q psy1859         144 -LCQFH-------RYDTGITSLCFSY  161 (162)
Q Consensus       144 -~~~~~-------~~~~~v~~v~~~p  161 (162)
                       .+.++       .+..+..|+.|+|
T Consensus       154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~  179 (361)
T KOG2445|consen  154 LQHEIQNVIDPPGKNKQPCFCVSWNP  179 (361)
T ss_pred             hhhhhhhccCCcccccCcceEEeecc
Confidence             22222       3555778888876

>KOG4283|consensus

Probab=99.78  E-value=1.8e-17  Score=107.03  Aligned_cols=141  Identities=17%  Similarity=0.208  Sum_probs=110.8

Q ss_pred             eeccccccEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC---CEE
Q psy1859           8 RESSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY---NTF   83 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~l   83 (162)
                      .+..+++.|..+.|-| |...|.+++.|.++++|+.+  +  .+....|+...          .|.+-+|+|-.   .++
T Consensus        96 h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtn--T--lQ~a~~F~me~----------~VYshamSp~a~sHcLi  161 (397)
T KOG4283|consen   96 HENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTN--T--LQEAVDFKMEG----------KVYSHAMSPMAMSHCLI  161 (397)
T ss_pred             CCccceeeeeeeEEeeecCceeecccccceEEEeecc--c--ceeeEEeecCc----------eeehhhcChhhhcceEE
Confidence            4556778888889998 66788899999999995544  4  44444444433          48888898853   478


Q ss_pred             EEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCC-EEEEecCCCeEEEEeCCCc-eeeeee-------------
Q psy1859          84 ATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYN-TFATGGSDGYVNIWDGFNK-KRLCQF-------------  147 (162)
Q Consensus        84 ~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~iwd~~~~-~~~~~~-------------  147 (162)
                      ++|..+-+|++.|+.+|..-..+.+|...|.++ |+|... .|++|+.||.|++||++.- .+...+             
T Consensus       162 A~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~  241 (397)
T KOG4283|consen  162 AAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKT  241 (397)
T ss_pred             EEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccc
Confidence            889999999999999999999999999999999 999766 5788999999999999854 233333             


Q ss_pred             -ccCCCceeEEEecCC
Q psy1859         148 -HRYDTGITSLCFSYD  162 (162)
Q Consensus       148 -~~~~~~v~~v~~~pd  162 (162)
                       ..|.+.|.+++|+.|
T Consensus       242 n~ah~gkvngla~tSd  257 (397)
T KOG4283|consen  242 NTAHYGKVNGLAWTSD  257 (397)
T ss_pred             cccccceeeeeeeccc
Confidence             246677888888764

>KOG1036|consensus

Probab=99.78  E-value=2.8e-17  Score=106.16  Aligned_cols=143  Identities=22%  Similarity=0.275  Sum_probs=110.4

Q ss_pred             CcccceeeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC
Q psy1859           1 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY   80 (162)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~   80 (162)
                      |+....+++.+-+..|+.+.|+|.+..|+++++||.+++|+.+...  .+..+.            |..++.+++|.+ .
T Consensus         1 ~~~~~~~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--l~~~~~------------~~~plL~c~F~d-~   65 (323)
T KOG1036|consen    1 MSPNEFELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--LKLKFK------------HGAPLLDCAFAD-E   65 (323)
T ss_pred             CCccccccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh--hhhhee------------cCCceeeeeccC-C
Confidence            4445556667778889999999999999999999999997766543  333332            444899999987 4


Q ss_pred             CEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEe
Q psy1859          81 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF  159 (162)
Q Consensus        81 ~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~  159 (162)
                      ..+++|+.||.|+++|+..+.. ..+..|..++.++ +.+....+++|+.|++|++||.+....+..+.... .|.++..
T Consensus        66 ~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v  143 (323)
T KOG1036|consen   66 STIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV  143 (323)
T ss_pred             ceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-eEEEEec
Confidence            6788999999999999998754 3445689999999 98888889999999999999999755555444322 5666554


Q ss_pred             c
Q psy1859         160 S  160 (162)
Q Consensus       160 ~  160 (162)
                      .
T Consensus       144 ~  144 (323)
T KOG1036|consen  144 S  144 (323)
T ss_pred             c
Confidence            3

>KOG0646|consensus

Probab=99.77  E-value=1.3e-17  Score=112.76  Aligned_cols=143  Identities=19%  Similarity=0.245  Sum_probs=108.1

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEec----CC-cccceeeeeeeeeeeccCcccceeceEEEEecCCC--CE
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLD----TG-PEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY--NT   82 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~   82 (162)
                      +.+.-.++|+.|+-|+.+|++|+.||.|.+|..-    .. +....+...+..|.         -+|+++...+.|  ..
T Consensus       120 ~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht---------lsITDl~ig~Gg~~~r  190 (476)
T KOG0646|consen  120 SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT---------LSITDLQIGSGGTNAR  190 (476)
T ss_pred             HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc---------ceeEEEEecCCCccce
Confidence            3445568999999999999999999999998752    11 11123334444444         478888887764  67


Q ss_pred             EEEecCCCeEEEEeCCCcccee---------------------------------------------------------e
Q psy1859          83 FATGGSDGYVNIWDGFNKKRLC---------------------------------------------------------Q  105 (162)
Q Consensus        83 l~~~~~d~~v~~wd~~~~~~~~---------------------------------------------------------~  105 (162)
                      +++++.|..+++||+..+..+.                                                         .
T Consensus       191 l~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~  270 (476)
T KOG0646|consen  191 LYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINV  270 (476)
T ss_pred             EEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeee
Confidence            8888888888888887543221                                                         2


Q ss_pred             eeeccc--ceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859         106 FHRYDT--GITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus       106 ~~~~~~--~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      +.+|.+  .|+|+ ++-||.+|++|+.||.+.|||+.+.++++++..-.++|+.+.+.|
T Consensus       271 ~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  271 LVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             eccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence            234545  89999 999999999999999999999999999998876678899888743

>KOG1063|consensus

Probab=99.77  E-value=6.5e-18  Score=119.10  Aligned_cols=144  Identities=13%  Similarity=0.193  Sum_probs=112.9

Q ss_pred             eeeccccccEEEEEEeeCCCeEEEEcCCCc---EEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEE
Q psy1859           7 RRESSLKFQTRCIKCFPNKQGYVLSSIEGR---AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF   83 (162)
Q Consensus         7 ~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~---i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l   83 (162)
                      +....+.+.+.+++.+|+++.++++.....   ..||.|+...  ...+..+..|..         .|+.++|||++++|
T Consensus       519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~--W~~~~~L~~HsL---------TVT~l~FSpdg~~L  587 (764)
T KOG1063|consen  519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN--WLQVQELEGHSL---------TVTRLAFSPDGRYL  587 (764)
T ss_pred             HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc--hhhhheecccce---------EEEEEEECCCCcEE
Confidence            334556788999999999999999865533   2345577665  555556677766         69999999999999


Q ss_pred             EEecCCCeEEEEeCCCcc----ceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc--eeeee--eccCCCce
Q psy1859          84 ATGGSDGYVNIWDGFNKK----RLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK--KRLCQ--FHRYDTGI  154 (162)
Q Consensus        84 ~~~~~d~~v~~wd~~~~~----~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~--~~~~~~~v  154 (162)
                      ++.++|..+.+|......    .....+.|...|.++ |+|++.+++|++.|.+|++|.....  +.+..  ...+..+|
T Consensus       588 LsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aV  667 (764)
T KOG1063|consen  588 LSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAV  667 (764)
T ss_pred             EEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCce
Confidence            999999999999886532    122356788999999 9999999999999999999998776  44433  23577889


Q ss_pred             eEEEecC
Q psy1859         155 TSLCFSY  161 (162)
Q Consensus       155 ~~v~~~p  161 (162)
                      +.++|.|
T Consensus       668 TAv~~~~  674 (764)
T KOG1063|consen  668 TAVAYLP  674 (764)
T ss_pred             eeEEeec
Confidence            9999876

>KOG1332|consensus

Probab=99.77  E-value=2.6e-18  Score=108.06  Aligned_cols=142  Identities=13%  Similarity=0.132  Sum_probs=111.7

Q ss_pred             ccccccEEEEEEee--CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC--CEEEE
Q psy1859          10 SSLKFQTRCIKCFP--NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY--NTFAT   85 (162)
Q Consensus        10 ~~~~~~~~~i~~~~--~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~~   85 (162)
                      ..+.+++..++|-.  .|.+|++++.||.|.||......  ....+....         |...|++++|.|.+  -.|++
T Consensus        53 ~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~--w~k~~e~~~---------h~~SVNsV~wapheygl~Lac  121 (299)
T KOG1332|consen   53 TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR--WTKAYEHAA---------HSASVNSVAWAPHEYGLLLAC  121 (299)
T ss_pred             cCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc--hhhhhhhhh---------hcccceeecccccccceEEEE
Confidence            44567788899864  69999999999999997655433  445554444         44589999999975  67889


Q ss_pred             ecCCCeEEEEeCCCc-c--ceeeeeecccceeEE-EcCC---C-----------CEEEEecCCCeEEEEeCCCce--eee
Q psy1859          86 GGSDGYVNIWDGFNK-K--RLCQFHRYDTGITSL-FHQE---Y-----------NTFATGGSDGYVNIWDGFNKK--RLC  145 (162)
Q Consensus        86 ~~~d~~v~~wd~~~~-~--~~~~~~~~~~~v~~~-~~~~---~-----------~~l~~~~~d~~i~iwd~~~~~--~~~  145 (162)
                      ++.||.|.+.+.+.. .  ..+...+|.-.++++ |.|.   |           +.|++|+.|+.|+||+..++.  ..+
T Consensus       122 asSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~  201 (299)
T KOG1332|consen  122 ASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER  201 (299)
T ss_pred             eeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhh
Confidence            999999999988764 2  233455788889999 9884   4           579999999999999998763  355


Q ss_pred             eeccCCCceeEEEecCC
Q psy1859         146 QFHRYDTGITSLCFSYD  162 (162)
Q Consensus       146 ~~~~~~~~v~~v~~~pd  162 (162)
                      ++.+|.+.|+.++|+|.
T Consensus       202 ~l~~H~dwVRDVAwaP~  218 (299)
T KOG1332|consen  202 TLEGHKDWVRDVAWAPS  218 (299)
T ss_pred             hhhhcchhhhhhhhccc
Confidence            58899999999999984

>KOG0771|consensus

Probab=99.77  E-value=1.3e-17  Score=111.50  Aligned_cols=135  Identities=20%  Similarity=0.167  Sum_probs=105.7

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      +...+++++.+|..+++++.||.++||+|....    .+.....         |...|.+++|+|+++.|++.+.| ..+
T Consensus       145 g~~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~----t~l~e~~---------~~~eV~DL~FS~dgk~lasig~d-~~~  210 (398)
T KOG0771|consen  145 GQQKVVAFNGDGSKLATGGTDGTLRVWEWPSML----TILEEIA---------HHAEVKDLDFSPDGKFLASIGAD-SAR  210 (398)
T ss_pred             CcceEEEEcCCCCEeeeccccceEEEEecCcch----hhhhhHh---------hcCccccceeCCCCcEEEEecCC-ceE
Confidence            334789999999999999999999998775432    2222222         33469999999999999999999 899


Q ss_pred             EEeCCCccceeeee------------------------------------------------------ecccceeEE-Ec
Q psy1859          94 IWDGFNKKRLCQFH------------------------------------------------------RYDTGITSL-FH  118 (162)
Q Consensus        94 ~wd~~~~~~~~~~~------------------------------------------------------~~~~~v~~~-~~  118 (162)
                      +|+.+++..+....                                                      .....++++ .+
T Consensus       211 VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS  290 (398)
T KOG0771|consen  211 VWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS  290 (398)
T ss_pred             EEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc
Confidence            99998772111000                                                      001267788 99


Q ss_pred             CCCCEEEEecCCCeEEEEeCCCceeeeee-ccCCCceeEEEecCC
Q psy1859         119 QEYNTFATGGSDGYVNIWDGFNKKRLCQF-HRYDTGITSLCFSYD  162 (162)
Q Consensus       119 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~v~~~pd  162 (162)
                      ++|++++.|+.||.|-|++..+.+.++.. +.|...|+.+.|+||
T Consensus       291 ~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pd  335 (398)
T KOG0771|consen  291 DDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPD  335 (398)
T ss_pred             CCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCC
Confidence            99999999999999999999888776655 479999999999997

>KOG0281|consensus

Probab=99.77  E-value=1.3e-18  Score=114.58  Aligned_cols=120  Identities=16%  Similarity=0.230  Sum_probs=100.5

Q ss_pred             CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccce
Q psy1859          24 NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRL  103 (162)
Q Consensus        24 ~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~  103 (162)
                      +.+++++++.|.++++|+.+  +  ...+.++.+|..         .|.|+.+.  ++++++|+.|.+|++||+..|.++
T Consensus       329 d~kyIVsASgDRTikvW~~s--t--~efvRtl~gHkR---------GIAClQYr--~rlvVSGSSDntIRlwdi~~G~cL  393 (499)
T KOG0281|consen  329 DDKYIVSASGDRTIKVWSTS--T--CEFVRTLNGHKR---------GIACLQYR--DRLVVSGSSDNTIRLWDIECGACL  393 (499)
T ss_pred             ccceEEEecCCceEEEEecc--c--eeeehhhhcccc---------cceehhcc--CeEEEecCCCceEEEEeccccHHH
Confidence            46799999999999996544  4  566777777765         68888764  689999999999999999999999


Q ss_pred             eeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCce---------eeeeeccCCCceeEEEec
Q psy1859         104 CQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKK---------RLCQFHRYDTGITSLCFS  160 (162)
Q Consensus       104 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~v~~v~~~  160 (162)
                      +.+.+|+.-|.++ |.  .+.+++|+.||+|++||+..+.         ++.++..|.+.|..+.|.
T Consensus       394 RvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD  458 (499)
T KOG0281|consen  394 RVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD  458 (499)
T ss_pred             HHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec
Confidence            9999999999999 85  6789999999999999997653         345556788888888875

>KOG1539|consensus

Probab=99.76  E-value=4.5e-17  Score=117.01  Aligned_cols=140  Identities=16%  Similarity=0.181  Sum_probs=112.8

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      ....+++++.++.|++.+.|+..|.|.+  ++.++  ......+..      ..+|..+|++++...-++.+++++.+|.
T Consensus       447 ~~~~~~av~vs~CGNF~~IG~S~G~Id~--fNmQS--Gi~r~sf~~------~~ah~~~V~gla~D~~n~~~vsa~~~Gi  516 (910)
T KOG1539|consen  447 DDINATAVCVSFCGNFVFIGYSKGTIDR--FNMQS--GIHRKSFGD------SPAHKGEVTGLAVDGTNRLLVSAGADGI  516 (910)
T ss_pred             cCcceEEEEEeccCceEEEeccCCeEEE--EEccc--Ceeeccccc------CccccCceeEEEecCCCceEEEccCcce
Confidence            4466788999999999999999999999  66655  222223211      1236668999999988899999999999


Q ss_pred             EEEEeCCCcc-----------------------------------------ceeeeeecccceeEE-EcCCCCEEEEecC
Q psy1859          92 VNIWDGFNKK-----------------------------------------RLCQFHRYDTGITSL-FHQEYNTFATGGS  129 (162)
Q Consensus        92 v~~wd~~~~~-----------------------------------------~~~~~~~~~~~v~~~-~~~~~~~l~~~~~  129 (162)
                      +..||..+..                                         .++.+.+|...++++ |||||+++++++.
T Consensus       517 lkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasm  596 (910)
T KOG1539|consen  517 LKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASM  596 (910)
T ss_pred             EEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeec
Confidence            9999987543                                         122345688899999 9999999999999


Q ss_pred             CCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         130 DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       130 d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |++|++||+.++.++..+. -..+++++.|+|+
T Consensus       597 D~tIr~wDlpt~~lID~~~-vd~~~~sls~SPn  628 (910)
T KOG1539|consen  597 DSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPN  628 (910)
T ss_pred             CCcEEEEeccCcceeeeEe-cCCcceeeEECCC
Confidence            9999999999999888775 4668899999985

>KOG0646|consensus

Probab=99.76  E-value=3.7e-17  Score=110.65  Aligned_cols=139  Identities=17%  Similarity=0.198  Sum_probs=112.2

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      .-.+++.+.|++-+|+|.+++.|+..|.+++|.+.  +  ......+..|         -..|+++.|+-++..|++|+.
T Consensus        77 ~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels--s--G~LL~v~~aH---------YQ~ITcL~fs~dgs~iiTgsk  143 (476)
T KOG0646|consen   77 YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELS--S--GILLNVLSAH---------YQSITCLKFSDDGSHIITGSK  143 (476)
T ss_pred             hcccccceeeeecCCCceEEEeecccCcEEEEEec--c--ccHHHHHHhh---------ccceeEEEEeCCCcEEEecCC
Confidence            34567889999999999999999999999996554  3  3334343444         347999999999999999999


Q ss_pred             CCeEEEEeCCC---------ccceeeeeecccceeEE-EcC--CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeE
Q psy1859          89 DGYVNIWDGFN---------KKRLCQFHRYDTGITSL-FHQ--EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITS  156 (162)
Q Consensus        89 d~~v~~wd~~~---------~~~~~~~~~~~~~v~~~-~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  156 (162)
                      ||.|.+|.+-+         -++...+..|.-+|+++ ..+  ...+++|++.|.++++||+..+..+.++. ....+.+
T Consensus       144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~a  222 (476)
T KOG0646|consen  144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKA  222 (476)
T ss_pred             CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCccee
Confidence            99999997642         35677888999999999 444  45689999999999999999998877765 4557888


Q ss_pred             EEecC
Q psy1859         157 LCFSY  161 (162)
Q Consensus       157 v~~~p  161 (162)
                      ++.+|
T Consensus       223 v~lDp  227 (476)
T KOG0646|consen  223 VALDP  227 (476)
T ss_pred             EEEcc
Confidence            87776

>KOG0307|consensus

Probab=99.74  E-value=2.6e-17  Score=121.28  Aligned_cols=154  Identities=12%  Similarity=0.124  Sum_probs=111.9

Q ss_pred             eeccccccEEEEEEeeCC-CeEEEEcCCCcEEEEEecCCccc-----c---ee------------------------eee
Q psy1859           8 RESSLKFQTRCIKCFPNK-QGYVLSSIEGRAAVEYLDTGPEM-----Q---KM------------------------KYA   54 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~~~-~~l~~~~~~g~i~i~~~~~~~~~-----~---~~------------------------~~~   54 (162)
                      ....++++|..+.|++.+ +.|++|+++|.|.|||++.-+.-     .   ..                        ++.
T Consensus       111 ~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD  190 (1049)
T KOG0307|consen  111 TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD  190 (1049)
T ss_pred             hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence            346688999999999964 58899999999999776431100     0   00                        000


Q ss_pred             eeeeeecc--CcccceeceEEEEecCCC-CEEEEecCC---CeEEEEeCCCc-cceeeeeecccceeEE-EcC-CCCEEE
Q psy1859          55 FKCHRIKE--DGIEKIYPVNAISFHQEY-NTFATGGSD---GYVNIWDGFNK-KRLCQFHRYDTGITSL-FHQ-EYNTFA  125 (162)
Q Consensus        55 ~~~~~~~~--~~~~~~~~v~~~~~~p~~-~~l~~~~~d---~~v~~wd~~~~-~~~~~~~~~~~~v~~~-~~~-~~~~l~  125 (162)
                      ++.....-  ....-...+..++|||+. ..+++++.|   -.|.+||+|.. .+++.+.+|...+.++ |++ |..+++
T Consensus       191 lr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lll  270 (1049)
T KOG0307|consen  191 LRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLL  270 (1049)
T ss_pred             ccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhh
Confidence            00000000  001111247799999998 566666554   57899999974 6788889999999999 999 558999


Q ss_pred             EecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859         126 TGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus       126 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      +++.|+.|..|+..+++.+..+....+.+..+.|+|
T Consensus       271 SsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~p  306 (1049)
T KOG0307|consen  271 SSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCP  306 (1049)
T ss_pred             cccCCCCeeEecCCCceEeeecCCCCcceeeeeecC
Confidence            999999999999999999999987778999999997

>KOG1007|consensus

Probab=99.74  E-value=6.7e-17  Score=104.06  Aligned_cols=140  Identities=19%  Similarity=0.248  Sum_probs=106.9

Q ss_pred             cccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecC--CCCEEEEecCCC
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ--EYNTFATGGSDG   90 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~l~~~~~d~   90 (162)
                      -+.+.|+.|.|++..+++-. +..|.+|+.+....   .+..+......    +|....++-+|+|  +++.+++. .|+
T Consensus       123 vg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~---~vaev~ss~s~----e~~~~ftsg~WspHHdgnqv~tt-~d~  193 (370)
T KOG1007|consen  123 VGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSK---IVAEVLSSESA----EMRHSFTSGAWSPHHDGNQVATT-SDS  193 (370)
T ss_pred             hCceeeEEEcCCCCeeEEec-cCceEEEEcccCcc---hheeecccccc----cccceecccccCCCCccceEEEe-CCC
Confidence            36789999999998888755 88899988776542   12222211111    1444688999999  45666655 588


Q ss_pred             eEEEEeCCCccceeeee-ecccceeEE-EcCCCC-EEEEecCCCeEEEEeCCCc-eeeeeeccCCCceeEEEecC
Q psy1859          91 YVNIWDGFNKKRLCQFH-RYDTGITSL-FHQEYN-TFATGGSDGYVNIWDGFNK-KRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~-~~~~~v~~~-~~~~~~-~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~p  161 (162)
                      .++.||+++.++...+. .|...+..+ |+|+.+ +|++++.||.|++||.|.. .++..+.+|.-.|++|.|+|
T Consensus       194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~  268 (370)
T KOG1007|consen  194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNP  268 (370)
T ss_pred             cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecC
Confidence            99999999877766654 678889999 999766 6888999999999999854 46888999999999999987

>KOG1274|consensus

Probab=99.74  E-value=2.4e-16  Score=114.27  Aligned_cols=144  Identities=17%  Similarity=0.176  Sum_probs=113.9

Q ss_pred             eeeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEE
Q psy1859           6 QRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFAT   85 (162)
Q Consensus         6 ~~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~   85 (162)
                      ......+..++++++++.+|++++.|++|-.|++  .+...  ......+++|..         +|.++.|+|++++|++
T Consensus        89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~--~~~~D--~s~~~~lrgh~a---------pVl~l~~~p~~~fLAv  155 (933)
T KOG1274|consen   89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKL--LNLDD--SSQEKVLRGHDA---------PVLQLSYDPKGNFLAV  155 (933)
T ss_pred             cceeeeeeccceEEEEecCCcEEEeecCceeEEE--Eeccc--cchheeecccCC---------ceeeeeEcCCCCEEEE
Confidence            3366778888999999999999999999999999  44433  334445556554         8999999999999999


Q ss_pred             ecCCCeEEEEeCCCccceeeeeec--------ccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec--cCCCce
Q psy1859          86 GGSDGYVNIWDGFNKKRLCQFHRY--------DTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH--RYDTGI  154 (162)
Q Consensus        86 ~~~d~~v~~wd~~~~~~~~~~~~~--------~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~v  154 (162)
                      .+.||.|++||+.++.....+..-        ...+..+ |+|+|..++..+.|+.|++|+..+......+.  .+...+
T Consensus       156 ss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~  235 (933)
T KOG1274|consen  156 SSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKF  235 (933)
T ss_pred             EecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccce
Confidence            999999999999998766655421        2233444 99998888888899999999998877665554  345558


Q ss_pred             eEEEecCC
Q psy1859         155 TSLCFSYD  162 (162)
Q Consensus       155 ~~v~~~pd  162 (162)
                      ..++|+|+
T Consensus       236 ~~~~wsPn  243 (933)
T KOG1274|consen  236 SDLQWSPN  243 (933)
T ss_pred             EEEEEcCC
Confidence            99999995

>KOG1445|consensus

Probab=99.73  E-value=9.9e-18  Score=117.95  Aligned_cols=119  Identities=14%  Similarity=0.216  Sum_probs=100.3

Q ss_pred             cEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcc---cceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCC
Q psy1859          15 QTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPE---MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSD   89 (162)
Q Consensus        15 ~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d   89 (162)
                      .+..+.|.| |...|+++++||.|+||.+.....   ..+....+..|         ...|+++.|+|-. ..|++++.|
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h---------~eKI~slRfHPLAadvLa~asyd  699 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIH---------GEKITSLRFHPLAADVLAVASYD  699 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecc---------cceEEEEEecchhhhHhhhhhcc
Confidence            457788999 678899999999999998866531   12223333444         4479999999976 889999999


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCce
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKK  142 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~  142 (162)
                      -+|++||+++++....+.+|...|..+ |||+|+.+++.+.||+|++|+.+++.
T Consensus       700 ~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  700 STIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE  753 (1012)
T ss_pred             ceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence            999999999999999999999999999 99999999999999999999988653

>KOG0647|consensus

Probab=99.73  E-value=1e-16  Score=103.52  Aligned_cols=125  Identities=38%  Similarity=0.661  Sum_probs=108.8

Q ss_pred             cccceeeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCC
Q psy1859           2 GYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN   81 (162)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~   81 (162)
                      +.+.++.+++++.+++||++..+...++.|+-+|.+.|..+|...  .+..++|++|+......+-.++|.+|+|+|...
T Consensus       187 ~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~--~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg  264 (347)
T KOG0647|consen  187 PTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPN--PKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG  264 (347)
T ss_pred             cchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCC--ccCceeEEEeccCCCCCCceEEecceEeecccc
Confidence            456778899999999999999999889999999999997777644  578889999986543333477899999999889


Q ss_pred             EEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEec
Q psy1859          82 TFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGG  128 (162)
Q Consensus        82 ~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~  128 (162)
                      .|++.+.||.+..||-.....++..+.+..+|+++ |+.+|.+++.+.
T Consensus       265 tlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  265 TLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             eEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            99999999999999998888888888899999999 999999888763

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.73  E-value=8.9e-16  Score=97.10  Aligned_cols=130  Identities=18%  Similarity=0.284  Sum_probs=91.9

Q ss_pred             EEEEEeeCCCeEEEEcC----------CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEE-
Q psy1859          17 RCIKCFPNKQGYVLSSI----------EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFAT-   85 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~----------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~-   85 (162)
                      -.+.|+|+|++|++-..          -+...||.++...  . ....+...        ..++|.+++|+|++..|++ 
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~--~-~~~~i~l~--------~~~~I~~~~WsP~g~~favi   77 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN--I-PVESIELK--------KEGPIHDVAWSPNGNEFAVI   77 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC--C-ccceeecc--------CCCceEEEEECcCCCEEEEE
Confidence            45789999998776433          2345566565443  1 11111111        1126999999999987654 


Q ss_pred             -ecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCC---CeEEEEeCCCceeeeeeccCCCceeEEEec
Q psy1859          86 -GGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSD---GYVNIWDGFNKKRLCQFHRYDTGITSLCFS  160 (162)
Q Consensus        86 -~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  160 (162)
                       |..+..+.+||++ ++.+..+.  ...+..+ |+|+|+++++++.+   |.|.+||+++.+.+.... |. .++.++|+
T Consensus        78 ~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~Ws  152 (194)
T PF08662_consen   78 YGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWS  152 (194)
T ss_pred             EccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEc
Confidence             4467899999997 56666653  4667788 99999999998744   679999999888887765 44 47899999


Q ss_pred             CC
Q psy1859         161 YD  162 (162)
Q Consensus       161 pd  162 (162)
                      ||
T Consensus       153 Pd  154 (194)
T PF08662_consen  153 PD  154 (194)
T ss_pred             CC
Confidence            97

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.73  E-value=5.6e-16  Score=98.01  Aligned_cols=120  Identities=19%  Similarity=0.323  Sum_probs=88.3

Q ss_pred             eccccccEEEEEEeeCCCeEEEEc--CCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSS--IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG   86 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~--~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~   86 (162)
                      ....++.|.+++|+|+++.|++..  .++.+.+|+.+     .+.+..+...           .+..+.|+|+|++++++
T Consensus        55 ~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-----~~~i~~~~~~-----------~~n~i~wsP~G~~l~~~  118 (194)
T PF08662_consen   55 ELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-----GKKIFSFGTQ-----------PRNTISWSPDGRFLVLA  118 (194)
T ss_pred             eccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-----ccEeEeecCC-----------CceEEEECCCCCEEEEE
Confidence            333456799999999999876653  45678885543     3334443321           47889999999999987


Q ss_pred             cC---CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecC------CCeEEEEeCCCceeeeee
Q psy1859          87 GS---DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS------DGYVNIWDGFNKKRLCQF  147 (162)
Q Consensus        87 ~~---d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~  147 (162)
                      +.   .|.+.+||.++.+.+.....  ..++.+ |+|+|++++++..      |+.++||+. +|+.+...
T Consensus       119 g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~  186 (194)
T PF08662_consen  119 GFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK  186 (194)
T ss_pred             EccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence            64   47799999998877776642  346778 9999999999874      788999998 56666543

>KOG0299|consensus

Probab=99.72  E-value=1.3e-16  Score=107.89  Aligned_cols=136  Identities=15%  Similarity=0.186  Sum_probs=113.0

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .+..++.+++.++|+++|++|+.|..+.||+.+.    ...+..+++|+.         .|.+++|-.....+.+++.|.
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t----~ehv~~~~ghr~---------~V~~L~fr~gt~~lys~s~Dr  266 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT----LEHVKVFKGHRG---------AVSSLAFRKGTSELYSASADR  266 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcc----cchhhccccccc---------ceeeeeeecCccceeeeecCC
Confidence            4556788999999999999999999999965554    556666777776         799999988778999999999


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEec
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS  160 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  160 (162)
                      .+++|++.....+.++.+|...|..+ -..-++.+-+|+.|.++++|++.. .....+.++.+.+-|++|-
T Consensus       267 svkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~I  336 (479)
T KOG0299|consen  267 SVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFI  336 (479)
T ss_pred             ceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEe
Confidence            99999999988899999999999999 555667777777999999999943 3344467888889888874

>KOG0299|consensus

Probab=99.72  E-value=9e-17  Score=108.67  Aligned_cols=147  Identities=16%  Similarity=0.224  Sum_probs=118.0

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccce-eeee----eeeeeeccCc--ccceeceEEEEecCCCCE
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQK-MKYA----FKCHRIKEDG--IEKIYPVNAISFHQEYNT   82 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~-~~~~----~~~~~~~~~~--~~~~~~v~~~~~~p~~~~   82 (162)
                      -.+.-.+.+++.+|+.++.++++.+++|.-|+.....  .. .+..    ++.|......  ..|...+.+++.++++++
T Consensus       139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk--~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgky  216 (479)
T KOG0299|consen  139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGK--KDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKY  216 (479)
T ss_pred             ccccCcceEEEeeccccceeecCCCcceeeeehhcCc--ccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcE
Confidence            3345567889999999999999999988875543322  11 1111    1112222111  368889999999999999


Q ss_pred             EEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEE
Q psy1859          83 FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLC  158 (162)
Q Consensus        83 l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~  158 (162)
                      |++|+.|..|.||+.++.+.++.+.+|.+.|.++ |-.....+++++.|..+++|++.....+.++.+|++.|.+|.
T Consensus       217 latgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id  293 (479)
T KOG0299|consen  217 LATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID  293 (479)
T ss_pred             EEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence            9999999999999999999999999999999999 988888899999999999999998888888889999888764

>KOG2055|consensus

Probab=99.72  E-value=6.7e-16  Score=104.72  Aligned_cols=153  Identities=22%  Similarity=0.269  Sum_probs=112.3

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeee------------eee-eecc--------------
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAF------------KCH-RIKE--------------   62 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~------------~~~-~~~~--------------   62 (162)
                      .+..+.|+++.|+|....+++|+.|++++||.+|.+.+.......+            .++ ....              
T Consensus       210 ~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~  289 (514)
T KOG2055|consen  210 HPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET  289 (514)
T ss_pred             CcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence            4456788999999999999999999999999888765321110000            001 0000              


Q ss_pred             -------------------------------------------------CcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          63 -------------------------------------------------DGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        63 -------------------------------------------------~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                                                                       ...+..+.|..+.|+.+++.|++++.+|.|+
T Consensus       290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~  369 (514)
T KOG2055|consen  290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVY  369 (514)
T ss_pred             cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEE
Confidence                                                             1122334788999999999999999999999


Q ss_pred             EEeCCCccceeeeeecccc-eeEE-EcCCCCEEEEecCCCeEEEEeCCC------ceeeeeeccCCCceeEEEecCC
Q psy1859          94 IWDGFNKKRLCQFHRYDTG-ITSL-FHQEYNTFATGGSDGYVNIWDGFN------KKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~-v~~~-~~~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +||++...++.++...++. -+++ .+++|.||++|+..|.|.|||..+      .+++..+..-...|++++|+||
T Consensus       370 v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d  446 (514)
T KOG2055|consen  370 VWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD  446 (514)
T ss_pred             EEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence            9999999888888654332 2234 778999999999999999999653      3456666666678999999986

>KOG0270|consensus

Probab=99.72  E-value=1.6e-16  Score=107.02  Aligned_cols=131  Identities=20%  Similarity=0.263  Sum_probs=101.9

Q ss_pred             EEEEEeeC-CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCeEEE
Q psy1859          17 RCIKCFPN-KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVNI   94 (162)
Q Consensus        17 ~~i~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v~~   94 (162)
                      ..++|+.. .+.|++|+.|.+|++|+.+..+    +..++..|.         ..|.+++|+|.. ..|++|+.|+++.+
T Consensus       247 l~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~----p~~s~~~~~---------k~Vq~l~wh~~~p~~LLsGs~D~~V~l  313 (463)
T KOG0270|consen  247 LALSWNRNFRNVLASGSADKTVKLWDVDTGK----PKSSITHHG---------KKVQTLEWHPYEPSVLLSGSYDGTVAL  313 (463)
T ss_pred             HHHHhccccceeEEecCCCceEEEEEcCCCC----cceehhhcC---------CceeEEEecCCCceEEEeccccceEEe
Confidence            45777775 4568899999999997776643    333434333         379999999986 88999999999999


Q ss_pred             EeCCCccc-eeeeeecccceeEE-EcCC-CCEEEEecCCCeEEEEeCCCc-eeeeeeccCCCceeEEEecC
Q psy1859          95 WDGFNKKR-LCQFHRYDTGITSL-FHQE-YNTFATGGSDGYVNIWDGFNK-KRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        95 wd~~~~~~-~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~p  161 (162)
                      .|.+.... -..+ ...+.|-.+ |.|. ...++++..||+++-+|+|+. +++.+++.|.++|.++++++
T Consensus       314 ~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~  383 (463)
T KOG0270|consen  314 KDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNI  383 (463)
T ss_pred             eeccCccccCceE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecC
Confidence            99995322 2222 235678888 8884 446778889999999999976 88999999999999999875

>KOG4328|consensus

Probab=99.72  E-value=1.6e-16  Score=107.57  Aligned_cols=147  Identities=16%  Similarity=0.161  Sum_probs=108.2

Q ss_pred             eeeccccccEEEEEEeeCC--CeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEE
Q psy1859           7 RRESSLKFQTRCIKCFPNK--QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTF   83 (162)
Q Consensus         7 ~~~~~~~~~~~~i~~~~~~--~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l   83 (162)
                      .......+.|.+++|+|..  +.+++|...|.|-+|+++.+......++.+..|.         .+|.++.|+|.. ..+
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs---------~~Vs~l~F~P~n~s~i  250 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS---------GPVSGLKFSPANTSQI  250 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC---------ccccceEecCCChhhe
Confidence            3445567889999999964  5678888889999999975443344455544444         489999999977 789


Q ss_pred             EEecCCCeEEEEeCCCcc---------------------------------------------ceeeeeecccceeEE-E
Q psy1859          84 ATGGSDGYVNIWDGFNKK---------------------------------------------RLCQFHRYDTGITSL-F  117 (162)
Q Consensus        84 ~~~~~d~~v~~wd~~~~~---------------------------------------------~~~~~~~~~~~v~~~-~  117 (162)
                      ++.+.||.|++-|++...                                             ....+..|...|..+ +
T Consensus       251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~  330 (498)
T KOG4328|consen  251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL  330 (498)
T ss_pred             eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence            999999999988886431                                             011122355678888 9


Q ss_pred             cC-CCCEEEEecCCCeEEEEeCCCce--e--eeeeccCCCceeEEEecCC
Q psy1859         118 HQ-EYNTFATGGSDGYVNIWDGFNKK--R--LCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       118 ~~-~~~~l~~~~~d~~i~iwd~~~~~--~--~~~~~~~~~~v~~v~~~pd  162 (162)
                      +| ...+++|++.|++++|||+|.-.  .  +.....|...|.+..|||+
T Consensus       331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs  380 (498)
T KOG4328|consen  331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPS  380 (498)
T ss_pred             CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCC
Confidence            99 55689999999999999998532  1  2223368999999999995

>KOG2919|consensus

Probab=99.71  E-value=1.2e-16  Score=104.23  Aligned_cols=138  Identities=16%  Similarity=0.228  Sum_probs=108.8

Q ss_pred             cccccEEEEEEeeC-CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec-C
Q psy1859          11 SLKFQTRCIKCFPN-KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-S   88 (162)
Q Consensus        11 ~~~~~~~~i~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~   88 (162)
                      ..++-+.|++++|- .+.++.++....+-|+.++..    .+...+-+|.         +.|+.+.|.++|+.|.+|. .
T Consensus       205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~----~pl~llggh~---------gGvThL~~~edGn~lfsGaRk  271 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHG---------GGVTHLQWCEDGNKLFSGARK  271 (406)
T ss_pred             cccceeeeeeccCCCCcceeeecccceeeeEecCCC----CceeeecccC---------CCeeeEEeccCcCeecccccC
Confidence            34567788999994 568999999999999777653    3444444444         4899999999998888887 5


Q ss_pred             CCeEEEEeCCCc-cceeeeeeccc-ceeEE---EcCCCCEEEEecCCCeEEEEeCCC-ceeeeeeccCCCceeEEEecC
Q psy1859          89 DGYVNIWDGFNK-KRLCQFHRYDT-GITSL---FHQEYNTFATGGSDGYVNIWDGFN-KKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        89 d~~v~~wd~~~~-~~~~~~~~~~~-~v~~~---~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      |-.|..||++.. .++..+..|.. .-..|   ..|++++|++|+.||.|++||+++ +..+..+..+...++.++++|
T Consensus       272 ~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP  350 (406)
T KOG2919|consen  272 DDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNP  350 (406)
T ss_pred             CCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCc
Confidence            789999999974 55666666544 33334   678999999999999999999988 666788888888888888887

>KOG0274|consensus

Probab=99.71  E-value=2.3e-16  Score=112.59  Aligned_cols=136  Identities=23%  Similarity=0.316  Sum_probs=111.3

Q ss_pred             eeccccccEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe
Q psy1859           8 RESSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG   86 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~   86 (162)
                      ....+.+|...+.... ....+++|+.|.+|++|+++.    ...+..+.+|..         +|.++..+  +.++++|
T Consensus       283 C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n----~~~l~l~~~h~~---------~V~~v~~~--~~~lvsg  347 (537)
T KOG0274|consen  283 CTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTN----GACLNLLRGHTG---------PVNCVQLD--EPLLVSG  347 (537)
T ss_pred             EEEEecCCCceEEEEEccCceEeeccCCceEEEEeccC----cceEEEeccccc---------cEEEEEec--CCEEEEE
Confidence            3455666766666544 455677789999999977763    344545454544         89999998  7899999


Q ss_pred             cCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc-eeeeeeccCCCceeEEEe
Q psy1859          87 GSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK-KRLCQFHRYDTGITSLCF  159 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~v~~  159 (162)
                      +.|+.|.+||+..++++..+.+|...|+++ +.+. ..+++|+-|+.|++||++++ +++.++.+|.+-+.++.+
T Consensus       348 s~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~  421 (537)
T KOG0274|consen  348 SYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL  421 (537)
T ss_pred             ecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc
Confidence            999999999999999999999999999999 8765 89999999999999999999 999999999887776654

>KOG0643|consensus

Probab=99.71  E-value=2.8e-15  Score=95.71  Aligned_cols=137  Identities=15%  Similarity=0.155  Sum_probs=113.6

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .++.+++.|.++.+|.+|.+++.|....||.-..    .+.+-++.+|+.         +|.+++.+-+...+++|+.|.
T Consensus         8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n----GerlGty~GHtG---------avW~~Did~~s~~liTGSAD~   74 (327)
T KOG0643|consen    8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN----GERLGTYDGHTG---------AVWCCDIDWDSKHLITGSADQ   74 (327)
T ss_pred             cCccccceEEecCCCcEEEEecCCCCceEEEecC----CceeeeecCCCc---------eEEEEEecCCcceeeeccccc
Confidence            3555678899999999999999999999984322    455666677665         899999999999999999999


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCC-----CeEEEEeCC-------CceeeeeeccCCCceeEE
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSD-----GYVNIWDGF-------NKKRLCQFHRYDTGITSL  157 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d-----~~i~iwd~~-------~~~~~~~~~~~~~~v~~v  157 (162)
                      .+++||+.+|+++..++ ...++..+ |+++|.+++...++     +.|.++|++       ...++.++..+.+.++..
T Consensus        75 t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a  153 (327)
T KOG0643|consen   75 TAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSA  153 (327)
T ss_pred             eeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeee
Confidence            99999999999998886 46788899 99999988877543     579999998       344577777788888888


Q ss_pred             EecC
Q psy1859         158 CFSY  161 (162)
Q Consensus       158 ~~~p  161 (162)
                      -|.|
T Consensus       154 ~Wg~  157 (327)
T KOG0643|consen  154 LWGP  157 (327)
T ss_pred             eecc
Confidence            8876

>KOG1273|consensus

Probab=99.71  E-value=1e-16  Score=104.36  Aligned_cols=90  Identities=19%  Similarity=0.231  Sum_probs=84.1

Q ss_pred             eEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeecc
Q psy1859          71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR  149 (162)
Q Consensus        71 v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  149 (162)
                      ..++.|++.|.++++|..||.|.+||+.+...-+.+.+|..+|+++ ||+||++|+|++.|..+.+||+..|.+++++. 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            6799999999999999999999999999988888899999999999 99999999999999999999999999888876 


Q ss_pred             CCCceeEEEecC
Q psy1859         150 YDTGITSLCFSY  161 (162)
Q Consensus       150 ~~~~v~~v~~~p  161 (162)
                      ..++|+...|+|
T Consensus       105 f~spv~~~q~hp  116 (405)
T KOG1273|consen  105 FDSPVWGAQWHP  116 (405)
T ss_pred             ccCccceeeecc
Confidence            567888888887

>KOG4378|consensus

Probab=99.70  E-value=6.8e-16  Score=105.92  Aligned_cols=132  Identities=17%  Similarity=0.236  Sum_probs=106.0

Q ss_pred             EEEEEEeeCCCeE-EEEcCCCcEEEEEecCCcccceeeee-eeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCeE
Q psy1859          16 TRCIKCFPNKQGY-VLSSIEGRAAVEYLDTGPEMQKMKYA-FKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYV   92 (162)
Q Consensus        16 ~~~i~~~~~~~~l-~~~~~~g~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v   92 (162)
                      ++-+.++|..+++ .+++++|.|.+|+.....    +++. .+.         |.++...|.|+|.. .+|++.+.|..|
T Consensus       167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~s----p~~~~~~~---------HsAP~~gicfspsne~l~vsVG~Dkki  233 (673)
T KOG4378|consen  167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS----PIFHASEA---------HSAPCRGICFSPSNEALLVSVGYDKKI  233 (673)
T ss_pred             EEEeecccccceeeEeeccCCeEEEEeccCCC----cccchhhh---------ccCCcCcceecCCccceEEEecccceE
Confidence            3467899977654 567899999996665433    2222 122         55689999999987 788899999999


Q ss_pred             EEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCce-eeeeeccCCCceeEEEecC
Q psy1859          93 NIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKK-RLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~v~~~p  161 (162)
                      .+||.+..+....+. ...+...+ |.++|.+|++|...|.|..||+|..+ ++.++..|...|++|+|.|
T Consensus       234 ~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~  303 (673)
T KOG4378|consen  234 NIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP  303 (673)
T ss_pred             EEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence            999999766655553 56788889 99999999999999999999999654 6888889999999999975

>KOG0308|consensus

Probab=99.69  E-value=6.3e-16  Score=108.68  Aligned_cols=118  Identities=18%  Similarity=0.196  Sum_probs=107.3

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      ..+..+.+++.++.|..++.|+.++.+++  ||+.+  .+.+..+++|+.         -|.++..+++|..+++++.||
T Consensus       169 G~k~siYSLA~N~t~t~ivsGgtek~lr~--wDprt--~~kimkLrGHTd---------NVr~ll~~dDGt~~ls~sSDg  235 (735)
T KOG0308|consen  169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRL--WDPRT--CKKIMKLRGHTD---------NVRVLLVNDDGTRLLSASSDG  235 (735)
T ss_pred             CCccceeeeecCCcceEEEecCcccceEE--ecccc--ccceeeeecccc---------ceEEEEEcCCCCeEeecCCCc
Confidence            55677899999999999999999999999  77766  667777788876         499999999999999999999


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK  141 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~  141 (162)
                      +|++||+...+++.++..|...+.++ .+|+-.++++|+.|+.|..=|+++.
T Consensus       236 tIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  236 TIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            99999999999999999999999999 9999999999999999999999874

>KOG0270|consensus

Probab=99.69  E-value=1.6e-16  Score=107.10  Aligned_cols=136  Identities=16%  Similarity=0.250  Sum_probs=101.3

Q ss_pred             CCeEEEEcCCCcEEEEEecCCcccceeeeeeee--------e-eeccCcccceeceEEEEecCCC-CEEEEecCCCeEEE
Q psy1859          25 KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC--------H-RIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVNI   94 (162)
Q Consensus        25 ~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v~~   94 (162)
                      |+++|.|+.+..|.||++|...... +...+..        . .......+|+.+|.+++|+..- +.|++|+.|.+|.+
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~-P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVL-PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             cceEEEeccCceeEEeccccccccc-cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            6899999999999999998754211 1111110        0 0001234688899999998875 78999999999999


Q ss_pred             EeCCCccceeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          95 WDGFNKKRLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        95 wd~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      ||+.++++...+..|...|.++ |+| ...+|++|+.|+++.+.|.|........=...+.|-.++|.|
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~  339 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDP  339 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecC
Confidence            9999999999999999999999 998 778999999999999999995322211112344566666654

>KOG1408|consensus

Probab=99.69  E-value=9.1e-16  Score=109.44  Aligned_cols=93  Identities=16%  Similarity=0.144  Sum_probs=83.8

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeee---cccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeee
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR---YDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLC  145 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~---~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  145 (162)
                      .+..|+..|..+++++++.|..|+|||+.+++..+.|++   +.+....+ ..|.|-|+++.+.|.++.++|+-+++++.
T Consensus       598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA  677 (1080)
T KOG1408|consen  598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA  677 (1080)
T ss_pred             eEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh
Confidence            466788888888999999999999999999999998875   44556666 99999999999999999999999999999


Q ss_pred             eeccCCCceeEEEecCC
Q psy1859         146 QFHRYDTGITSLCFSYD  162 (162)
Q Consensus       146 ~~~~~~~~v~~v~~~pd  162 (162)
                      ++.+|...|+.+.|.+|
T Consensus       678 ~m~GHsE~VTG~kF~nD  694 (1080)
T KOG1408|consen  678 QMTGHSEAVTGVKFLND  694 (1080)
T ss_pred             hhcCcchheeeeeeccc
Confidence            99999999999999987

>KOG0294|consensus

Probab=99.68  E-value=1.6e-15  Score=98.60  Aligned_cols=124  Identities=23%  Similarity=0.263  Sum_probs=100.3

Q ss_pred             eEEEEcCCCcEEEEEecCCcc----cce----eeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCC
Q psy1859          27 GYVLSSIEGRAAVEYLDTGPE----MQK----MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF   98 (162)
Q Consensus        27 ~l~~~~~~g~i~i~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~   98 (162)
                      .+++|+....|.-+..++...    ..+    ..+.+         .+|..++++++.+  ++++++|+.|.+|+|||++
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~---------~aH~~sitavAVs--~~~~aSGssDetI~IYDm~   71 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAF---------SAHAGSITALAVS--GPYVASGSSDETIHIYDMR   71 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccc---------cccccceeEEEec--ceeEeccCCCCcEEEEecc
Confidence            367777776665545554320    011    12222         2366799999985  7999999999999999999


Q ss_pred             CccceeeeeecccceeEE-EcCCCC--EEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          99 NKKRLCQFHRYDTGITSL-FHQEYN--TFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        99 ~~~~~~~~~~~~~~v~~~-~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      +.+.+..+..|.+.++++ |.++..  .|++|+.||.|.+|+...-.++..+++|...|+.++.+|
T Consensus        72 k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP  137 (362)
T KOG0294|consen   72 KRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP  137 (362)
T ss_pred             chhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC
Confidence            999999898999999999 888665  899999999999999999999999999999999999988

>KOG0639|consensus

Probab=99.68  E-value=1.4e-15  Score=104.54  Aligned_cols=140  Identities=15%  Similarity=0.180  Sum_probs=107.2

Q ss_pred             ccE-EEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeE
Q psy1859          14 FQT-RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV   92 (162)
Q Consensus        14 ~~~-~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v   92 (162)
                      +.+ .+++++...+.+++| ..|.|+||++.... ....+..+.+.+..       ..++++.+.|+|+.|++|+.-.++
T Consensus       419 GEvVcAvtIS~~trhVyTg-GkgcVKVWdis~pg-~k~PvsqLdcl~rd-------nyiRSckL~pdgrtLivGGeastl  489 (705)
T KOG0639|consen  419 GEVVCAVTISNPTRHVYTG-GKGCVKVWDISQPG-NKSPVSQLDCLNRD-------NYIRSCKLLPDGRTLIVGGEASTL  489 (705)
T ss_pred             CcEEEEEEecCCcceeEec-CCCeEEEeeccCCC-CCCccccccccCcc-------cceeeeEecCCCceEEecccccee
Confidence            444 446677777777775 45889998776542 23344455554221       269999999999999999999999


Q ss_pred             EEEeCCCccce--eeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          93 NIWDGFNKKRL--CQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        93 ~~wd~~~~~~~--~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .|||+....+.  ..+.........+ .+||.+..+++..||.|.|||+.+...++.+++|.+.+.||..++|
T Consensus       490 siWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~d  562 (705)
T KOG0639|consen  490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKD  562 (705)
T ss_pred             eeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCC
Confidence            99999876442  2333333445566 9999999999999999999999999999999999999999999875

>KOG2139|consensus

Probab=99.67  E-value=5.8e-15  Score=97.85  Aligned_cols=156  Identities=10%  Similarity=0.168  Sum_probs=104.7

Q ss_pred             ceeeeccccccEEEEEEeeCC-CeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeec-cCcccceeceEEEEecCCCCE
Q psy1859           5 MQRRESSLKFQTRCIKCFPNK-QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIK-EDGIEKIYPVNAISFHQEYNT   82 (162)
Q Consensus         5 ~~~~~~~~~~~~~~i~~~~~~-~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~   82 (162)
                      ...+.+.....++|++|-|.+ ..|++| -.+-|.||..+...+....+.....+... ....+| .+|++++|+++|..
T Consensus       132 pt~Lks~sQrnvtclawRPlsaselavg-Cr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~  209 (445)
T KOG2139|consen  132 PTKLKSVSQRNVTCLAWRPLSASELAVG-CRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTI  209 (445)
T ss_pred             CceecchhhcceeEEEeccCCcceeeee-ecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCE
Confidence            345567777889999999975 445554 44668888766433222211111111110 112223 37999999999988


Q ss_pred             EEEec-CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEec
Q psy1859          83 FATGG-SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS  160 (162)
Q Consensus        83 l~~~~-~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  160 (162)
                      +++++ .|..|.+||..++..+.......+.++-+ |||||.+++++.-|+..++|+.....--.....-.+.|+.-+|+
T Consensus       210 l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWs  289 (445)
T KOG2139|consen  210 LVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWS  289 (445)
T ss_pred             EeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeec
Confidence            88887 56899999999987666554455677778 99999999999999999999654433222233344578888888


Q ss_pred             CC
Q psy1859         161 YD  162 (162)
Q Consensus       161 pd  162 (162)
                      |+
T Consensus       290 pc  291 (445)
T KOG2139|consen  290 PC  291 (445)
T ss_pred             CC
Confidence            85

>KOG0300|consensus

Probab=99.66  E-value=1.1e-15  Score=99.91  Aligned_cols=120  Identities=19%  Similarity=0.276  Sum_probs=97.3

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      ..+.+..|-..|+.++++++|.+..+|+.+.    ...+..+.+|..         ..+.+.-+|.++++++.+.|.+.+
T Consensus       273 ~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt----ge~v~~LtGHd~---------ELtHcstHptQrLVvTsSrDtTFR  339 (481)
T KOG0300|consen  273 AVVSACDWLAGGQQMVTASWDRTANLWDVET----GEVVNILTGHDS---------ELTHCSTHPTQRLVVTSSRDTTFR  339 (481)
T ss_pred             cceEehhhhcCcceeeeeeccccceeeeecc----CceeccccCcch---------hccccccCCcceEEEEeccCceeE
Confidence            3445556888899999999999999965544    556667777766         588888999999999999999999


Q ss_pred             EEeCCCc-cceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCce-eeeee
Q psy1859          94 IWDGFNK-KRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKK-RLCQF  147 (162)
Q Consensus        94 ~wd~~~~-~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~  147 (162)
                      +||++.. ..+..|.+|...+++. |..+ ..+++|++|.+|++||+++.+ ++.++
T Consensus       340 LWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATI  395 (481)
T KOG0300|consen  340 LWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATI  395 (481)
T ss_pred             eccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceee
Confidence            9999953 3467888999999999 8865 468999999999999998764 24444

>KOG1007|consensus

Probab=99.66  E-value=2e-15  Score=97.37  Aligned_cols=134  Identities=19%  Similarity=0.233  Sum_probs=100.1

Q ss_pred             cEEEEEEee--CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCe
Q psy1859          15 QTRCIKCFP--NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGY   91 (162)
Q Consensus        15 ~~~~i~~~~--~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~   91 (162)
                      +.++-+|+|  +++.+++ ..|+++..|+..  +  ......+.        .+|...|..++|+|+. ..|++|+.||.
T Consensus       172 ~ftsg~WspHHdgnqv~t-t~d~tl~~~D~R--T--~~~~~sI~--------dAHgq~vrdlDfNpnkq~~lvt~gDdgy  238 (370)
T KOG1007|consen  172 SFTSGAWSPHHDGNQVAT-TSDSTLQFWDLR--T--MKKNNSIE--------DAHGQRVRDLDFNPNKQHILVTCGDDGY  238 (370)
T ss_pred             eecccccCCCCccceEEE-eCCCcEEEEEcc--c--hhhhcchh--------hhhcceeeeccCCCCceEEEEEcCCCcc
Confidence            345566888  6777776 567888885554  3  22222211        1244479999999987 67889999999


Q ss_pred             EEEEeCCCc-cceeeeeecccceeEE-EcCC-CCEEEEecCCCeEEEEeCCCc---------------------------
Q psy1859          92 VNIWDGFNK-KRLCQFHRYDTGITSL-FHQE-YNTFATGGSDGYVNIWDGFNK---------------------------  141 (162)
Q Consensus        92 v~~wd~~~~-~~~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~iwd~~~~---------------------------  141 (162)
                      |++||.++- .+++.+..|..++.++ |+|. .+++.+|+.|..|.+|....-                           
T Consensus       239 vriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL  318 (370)
T KOG1007|consen  239 VRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPL  318 (370)
T ss_pred             EEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccc
Confidence            999999984 5788999999999999 9994 457889999999999964320                           


Q ss_pred             --eeeeeeccCCCceeEEEecC
Q psy1859         142 --KRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus       142 --~~~~~~~~~~~~v~~v~~~p  161 (162)
                        ..+.++..|.+.|++++||.
T Consensus       319 ~dg~l~tydehEDSVY~~aWSs  340 (370)
T KOG1007|consen  319 QDGQLETYDEHEDSVYALAWSS  340 (370)
T ss_pred             cccccccccccccceEEEeecc
Confidence              12446778999999999974

>KOG1034|consensus

Probab=99.66  E-value=2.6e-15  Score=98.22  Aligned_cols=113  Identities=17%  Similarity=0.216  Sum_probs=93.4

Q ss_pred             EEEEEEeeC----CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCC
Q psy1859          16 TRCIKCFPN----KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDG   90 (162)
Q Consensus        16 ~~~i~~~~~----~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~   90 (162)
                      -..++|+-+    ..++++|+.-|.|+|  +|..+  .+....+.+|..         .|..+.++|.. +++++++.|.
T Consensus        92 fytcsw~yd~~~~~p~la~~G~~GvIrV--id~~~--~~~~~~~~ghG~---------sINeik~~p~~~qlvls~SkD~  158 (385)
T KOG1034|consen   92 FYTCSWSYDSNTGNPFLAAGGYLGVIRV--IDVVS--GQCSKNYRGHGG---------SINEIKFHPDRPQLVLSASKDH  158 (385)
T ss_pred             eEEEEEEecCCCCCeeEEeecceeEEEE--Eecch--hhhccceeccCc---------cchhhhcCCCCCcEEEEecCCc
Confidence            355667653    457888888899999  66655  444445556554         79999999987 8999999999


Q ss_pred             eEEEEeCCCccceeeee---ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc
Q psy1859          91 YVNIWDGFNKKRLCQFH---RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK  141 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~---~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~  141 (162)
                      .|++|++++..++..+.   +|...|.++ |+++|.++++++-|.+|++|++..+
T Consensus       159 svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  159 SVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             eEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence            99999999998887764   688999999 9999999999999999999999743

>KOG1445|consensus

Probab=99.66  E-value=3.9e-16  Score=110.07  Aligned_cols=133  Identities=19%  Similarity=0.199  Sum_probs=101.7

Q ss_pred             EeeCCCeEEE--EcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCeEEEEeC
Q psy1859          21 CFPNKQGYVL--SSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWDG   97 (162)
Q Consensus        21 ~~~~~~~l~~--~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v~~wd~   97 (162)
                      |+.+..++++  ++..|.|.|+.++...  .-..-.+.+-.       ....|+.+.|.|.. ..|++++.||.|++|.+
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PG--rLPDgv~p~l~-------Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~  657 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPG--RLPDGVMPGLF-------NGTLVTDLHWDPFDDERLAVATDDGQINLWRL  657 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCC--CCCcccccccc-------cCceeeecccCCCChHHeeecccCceEEEEEe
Confidence            4444555544  4667899995554332  22221222211       11259999999976 89999999999999998


Q ss_pred             CCc-------cceeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          98 FNK-------KRLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        98 ~~~-------~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ..+       .+-..+..|...|+.+ |+| ....|++++.|.+|++||+++++....+.+|.+.|.+++||||
T Consensus       658 ~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd  731 (1012)
T KOG1445|consen  658 TANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPD  731 (1012)
T ss_pred             ccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCC
Confidence            764       3445677899999999 999 6678999999999999999999999999999999999999997

>KOG2096|consensus

Probab=99.66  E-value=3.1e-15  Score=97.73  Aligned_cols=136  Identities=18%  Similarity=0.142  Sum_probs=101.8

Q ss_pred             EEEEEeeCCCeEEEEcCCCcEEEEEecCCc----ccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeE
Q psy1859          17 RCIKCFPNKQGYVLSSIEGRAAVEYLDTGP----EMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV   92 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v   92 (162)
                      ...+.+|+|+++++++.--.+++|..-..+    .....++.+++|..         +|..++|+|+...+++.+.||.+
T Consensus       232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~s---------aV~~~aFsn~S~r~vtvSkDG~w  302 (420)
T KOG2096|consen  232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS---------AVLAAAFSNSSTRAVTVSKDGKW  302 (420)
T ss_pred             cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchh---------heeeeeeCCCcceeEEEecCCcE
Confidence            346799999999999999999997542211    11345566677665         89999999999999999999999


Q ss_pred             EEEeCCCc-------cceeeee----ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec-cCCCceeEEEe
Q psy1859          93 NIWDGFNK-------KRLCQFH----RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH-RYDTGITSLCF  159 (162)
Q Consensus        93 ~~wd~~~~-------~~~~~~~----~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~v~~  159 (162)
                      ++||..-.       +.+++..    ...+....+ ++|+|+.|+.+ ....|+++..++++....++ .|...|.+|+|
T Consensus       303 riwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~  381 (420)
T KOG2096|consen  303 RIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISY  381 (420)
T ss_pred             EEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEe
Confidence            99998631       2222221    123334467 99999988877 45589999999887665553 68899999999


Q ss_pred             cCC
Q psy1859         160 SYD  162 (162)
Q Consensus       160 ~pd  162 (162)
                      +||
T Consensus       382 ~~~  384 (420)
T KOG2096|consen  382 SSD  384 (420)
T ss_pred             cCC
Confidence            985

>KOG0301|consensus

Probab=99.66  E-value=6.4e-15  Score=104.30  Aligned_cols=125  Identities=18%  Similarity=0.246  Sum_probs=96.4

Q ss_pred             EEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEE
Q psy1859          16 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW   95 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~w   95 (162)
                      +.+++..|++ .+++|+.|.+|++|  ..    .+...++.+|.         +.|+++++-+++ .|++++.||.|++|
T Consensus       143 VWAv~~l~e~-~~vTgsaDKtIklW--k~----~~~l~tf~gHt---------D~VRgL~vl~~~-~flScsNDg~Ir~w  205 (745)
T KOG0301|consen  143 VWAVASLPEN-TYVTGSADKTIKLW--KG----GTLLKTFSGHT---------DCVRGLAVLDDS-HFLSCSNDGSIRLW  205 (745)
T ss_pred             eeeeeecCCC-cEEeccCcceeeec--cC----Cchhhhhccch---------hheeeeEEecCC-CeEeecCCceEEEE
Confidence            3455555655 56777777777774  22    23344555554         479999998854 57899999999999


Q ss_pred             eCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEec
Q psy1859          96 DGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS  160 (162)
Q Consensus        96 d~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  160 (162)
                      ++ ++..+.++.+|...++++ ..+++..++++++|++++||+..  .+.+.+....-.|+++++-
T Consensus       206 ~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L  268 (745)
T KOG0301|consen  206 DL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVL  268 (745)
T ss_pred             ec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEe
Confidence            99 688999999999999999 88888899999999999999986  7777777555577777654

>KOG1523|consensus

Probab=99.65  E-value=4.3e-15  Score=96.86  Aligned_cols=142  Identities=13%  Similarity=0.144  Sum_probs=113.1

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .+..+|+|.+|++|+..++++-....+.||.....+ ..+...+++.|..         .|++++|+|..+.|++|+.|.
T Consensus         8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-~w~~~htls~Hd~---------~vtgvdWap~snrIvtcs~dr   77 (361)
T KOG1523|consen    8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-LWEPAHTLSEHDK---------IVTGVDWAPKSNRIVTCSHDR   77 (361)
T ss_pred             eccCceeeeeecCCCceEEeccCCceEEEEEecCCC-CceeceehhhhCc---------ceeEEeecCCCCceeEccCCC
Confidence            456789999999999999999999999997665432 1445555555544         799999999999999999999


Q ss_pred             eEEEEeCCC-c--cceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCcee--e--eeeccCCCceeEEEecCC
Q psy1859          91 YVNIWDGFN-K--KRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKR--L--CQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        91 ~v~~wd~~~-~--~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~--~--~~~~~~~~~v~~v~~~pd  162 (162)
                      .-++|...+ +  ++...+..++..++++ |+|.+..+++|+....|.||-++...-  +  +.-..+.+.|+++.|+|+
T Consensus        78 nayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn  157 (361)
T KOG1523|consen   78 NAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN  157 (361)
T ss_pred             CccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence            999999843 3  4555666788999999 999999999999999999998764321  1  122457788999999985

>KOG0649|consensus

Probab=99.65  E-value=7.9e-15  Score=92.70  Aligned_cols=134  Identities=14%  Similarity=0.137  Sum_probs=97.5

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcc--cceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPE--MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      ..+.+++..++|.  ..+|++|+ ||.|+=|.|+....  ..+...........  +.-....|.++-..|..+-++.++
T Consensus        59 qahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~--~~~evPeINam~ldP~enSi~~Ag  133 (325)
T KOG0649|consen   59 QAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQV--DAVEVPEINAMWLDPSENSILFAG  133 (325)
T ss_pred             cccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCcccc--CcccCCccceeEeccCCCcEEEec
Confidence            4567888888888  34566654 59999999976432  12222221111100  001112588999999887777777


Q ss_pred             CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859          88 SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      .|+.++-||+++|+..+++++|...+.++ -......+++|++||++++||.++++++..+.
T Consensus       134 GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie  195 (325)
T KOG0649|consen  134 GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE  195 (325)
T ss_pred             CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence            99999999999999999999999999999 53444568899999999999999999888774

>KOG1524|consensus

Probab=99.65  E-value=1.6e-15  Score=105.09  Aligned_cols=135  Identities=17%  Similarity=0.220  Sum_probs=104.2

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      +.+.+.+-.|+|+|.-|++++.||.|++|.-..   +.+....  ...         .+|.|++|.|+.+.++-+. .+.
T Consensus       103 H~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG---MLRStl~--Q~~---------~~v~c~~W~p~S~~vl~c~-g~h  167 (737)
T KOG1524|consen  103 HAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG---MLRSTVV--QNE---------ESIRCARWAPNSNSIVFCQ-GGH  167 (737)
T ss_pred             hhhhhhhcccCCCCceeeeecCCceEEEEeccc---hHHHHHh--hcC---------ceeEEEEECCCCCceEEec-CCe
Confidence            344455667999999999999999999964321   1221111  111         1699999999986655553 456


Q ss_pred             EEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          92 VNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +.+=.+.....+-.++.|++-|.++ |++...++++|++|-..++||- .|..+..-..|.-+|++++|+||
T Consensus       168 ~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd  238 (737)
T KOG1524|consen  168 ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE  238 (737)
T ss_pred             EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc
Confidence            7777777667777888999999999 9999999999999999999998 46666666778889999999986

>KOG2394|consensus

Probab=99.64  E-value=1.5e-15  Score=104.91  Aligned_cols=93  Identities=14%  Similarity=0.130  Sum_probs=77.2

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      +.+...+|+|||++|++.+.||.++|++|+...  ...+  ++..=         +...|+.|||||++|++|+.|-.|.
T Consensus       291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e--Llg~--mkSYF---------GGLLCvcWSPDGKyIvtGGEDDLVt  357 (636)
T KOG2394|consen  291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE--LLGV--MKSYF---------GGLLCVCWSPDGKYIVTGGEDDLVT  357 (636)
T ss_pred             ccccceeEcCCCceEEEEecCceEEEeeccHHH--HHHH--HHhhc---------cceEEEEEcCCccEEEecCCcceEE
Confidence            456678899999999999999999998888644  2111  11111         1589999999999999999999999


Q ss_pred             EEeCCCccceeeeeecccceeEE-EcC
Q psy1859          94 IWDGFNKKRLCQFHRYDTGITSL-FHQ  119 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~v~~~-~~~  119 (162)
                      ||.+..++.+..-.+|+++|..+ |+|
T Consensus       358 VwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  358 VWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EEEeccceEEEeccccccceeeEeecc
Confidence            99999999999999999999999 883

>KOG2106|consensus

Probab=99.64  E-value=2.9e-14  Score=98.11  Aligned_cols=130  Identities=15%  Similarity=0.209  Sum_probs=102.3

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEE
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI   94 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~   94 (162)
                      ....++.+|+.+.+++++.|+.++||+  .    .+..++....          +++.+++|+|.| .++.|+..|...+
T Consensus       370 elwgla~hps~~q~~T~gqdk~v~lW~--~----~k~~wt~~~~----------d~~~~~~fhpsg-~va~Gt~~G~w~V  432 (626)
T KOG2106|consen  370 ELWGLATHPSKNQLLTCGQDKHVRLWN--D----HKLEWTKIIE----------DPAECADFHPSG-VVAVGTATGRWFV  432 (626)
T ss_pred             ceeeEEcCCChhheeeccCcceEEEcc--C----CceeEEEEec----------CceeEeeccCcc-eEEEeeccceEEE
Confidence            445688899999999999999999965  2    2333332211          268999999999 9999999999999


Q ss_pred             EeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCC-ceeeeee-ccCCCceeEEEecCC
Q psy1859          95 WDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFN-KKRLCQF-HRYDTGITSLCFSYD  162 (162)
Q Consensus        95 wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~-~~~~~~v~~v~~~pd  162 (162)
                      .|.++...+..... ..+++++ |+|+|.+|+.|+.|+.|++|.+.. +...... ..+.++|+.+.||+|
T Consensus       433 ~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~D  502 (626)
T KOG2106|consen  433 LDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSD  502 (626)
T ss_pred             EecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCC
Confidence            99998665555555 8889999 999999999999999999999864 3333332 234479999999987

>KOG0288|consensus

Probab=99.64  E-value=5.9e-15  Score=98.97  Aligned_cols=121  Identities=18%  Similarity=0.236  Sum_probs=97.1

Q ss_pred             eeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe
Q psy1859           7 RRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG   86 (162)
Q Consensus         7 ~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~   86 (162)
                      ...-++.+.++++..++++..+++++.|.++.+  +|.....-...+...+..       .....+.+.|||++.++++|
T Consensus       335 ~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~v--iDlRt~eI~~~~sA~g~k-------~asDwtrvvfSpd~~YvaAG  405 (459)
T KOG0288|consen  335 TRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKV--IDLRTKEIRQTFSAEGFK-------CASDWTRVVFSPDGSYVAAG  405 (459)
T ss_pred             eeEeecCcceeeEeeccCCeEEeeecCCCceee--eecccccEEEEeeccccc-------cccccceeEECCCCceeeec
Confidence            344556788999999999999999999999999  555442233333333322       22248899999999999999


Q ss_pred             cCCCeEEEEeCCCccceeeeeeccc--ceeEE-EcCCCCEEEEecCCCeEEEE
Q psy1859          87 GSDGYVNIWDGFNKKRLCQFHRYDT--GITSL-FHQEYNTFATGGSDGYVNIW  136 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~~~~~~~~~~~--~v~~~-~~~~~~~l~~~~~d~~i~iw  136 (162)
                      +.||.|+||++.++++...+.....  .|+++ |+|.|..+++++.++.+.+|
T Consensus       406 S~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  406 SADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             cCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            9999999999999998887775544  59999 99999999999999999998

>KOG0268|consensus

Probab=99.63  E-value=1.7e-15  Score=100.21  Aligned_cols=135  Identities=15%  Similarity=0.158  Sum_probs=104.5

Q ss_pred             ccEEEEEEeeC-CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeE
Q psy1859          14 FQTRCIKCFPN-KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV   92 (162)
Q Consensus        14 ~~~~~i~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v   92 (162)
                      ..+.++.|+|. ...|++|..|+.|.|+|....+  ......+..            .-..|+|+|++-.|++++.|..+
T Consensus       188 Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~--Pl~KVi~~m------------RTN~IswnPeafnF~~a~ED~nl  253 (433)
T KOG0268|consen  188 DSISSVKFNPVETSILASCASDRSIVLYDLRQAS--PLKKVILTM------------RTNTICWNPEAFNFVAANEDHNL  253 (433)
T ss_pred             CceeEEecCCCcchheeeeccCCceEEEecccCC--ccceeeeec------------cccceecCccccceeeccccccc
Confidence            45678899996 4567777899999996555444  322222222            24579999988889999999999


Q ss_pred             EEEeCCC-ccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec-cCCCceeEEEecCC
Q psy1859          93 NIWDGFN-KKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH-RYDTGITSLCFSYD  162 (162)
Q Consensus        93 ~~wd~~~-~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~pd  162 (162)
                      +.+|++. ..++.....|.+.+.++ |+|.|+-+++|+.|.+|+||.++.+..-..+. -.-..|.+|.||-|
T Consensus       254 Y~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~D  326 (433)
T KOG0268|consen  254 YTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMD  326 (433)
T ss_pred             eehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecc
Confidence            9999998 46788888999999999 99999999999999999999998876544332 12246888888865

>KOG0290|consensus

Probab=99.63  E-value=7.7e-15  Score=94.76  Aligned_cols=126  Identities=16%  Similarity=0.222  Sum_probs=91.8

Q ss_pred             cccccEEEEEEeeCCC--e-EEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEe
Q psy1859          11 SLKFQTRCIKCFPNKQ--G-YVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATG   86 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~--~-l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~   86 (162)
                      .+.++++.+.|.|+..  + =+.++.+..+++|..+..+........+..+...    .+.+++++++|+.-. +++.++
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns----~~~aPlTSFDWne~dp~~igtS  169 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNS----EFCAPLTSFDWNEVDPNLIGTS  169 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCccc----ccCCcccccccccCCcceeEee
Confidence            5678889999999753  1 1223445678998887544223332233333222    256699999998865 889999


Q ss_pred             cCCCeEEEEeCCCccc---eeeeeecccceeEE-EcCCC-CEEEEecCCCeEEEEeCCC
Q psy1859          87 GSDGYVNIWDGFNKKR---LCQFHRYDTGITSL-FHQEY-NTFATGGSDGYVNIWDGFN  140 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~~---~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~i~iwd~~~  140 (162)
                      +-|.+..+||++.+..   ...+-.|...|..+ |...+ +.+++.+.||.+|++|+|.
T Consensus       170 SiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~  228 (364)
T KOG0290|consen  170 SIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS  228 (364)
T ss_pred             cccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecc
Confidence            9999999999998733   34555899999999 99855 4788899999999999985

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.63  E-value=9.4e-14  Score=93.34  Aligned_cols=139  Identities=14%  Similarity=0.034  Sum_probs=95.6

Q ss_pred             cEEEEEEeeCCCeEEEE-cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEE-EecCCCeE
Q psy1859          15 QTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA-TGGSDGYV   92 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~~v   92 (162)
                      ....++|+|+++.++++ ..++.+.+|+.+..    +....+..+....  ..-......++|+|+++.++ +...++.+
T Consensus       158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~----~~~~~~~~~~~~~--~~~~~~~~~i~~s~dg~~~~~~~~~~~~i  231 (300)
T TIGR03866       158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATR----KVIKKITFEIPGV--HPEAVQPVGIKLTKDGKTAFVALGPANRV  231 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc----eeeeeeeeccccc--ccccCCccceEECCCCCEEEEEcCCCCeE
Confidence            34568899999988655 45899999655432    2222211110000  00001245788999998754 44567789


Q ss_pred             EEEeCCCccceeeeeecccceeEE-EcCCCCEEEEe-cCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          93 NIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATG-GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      .+||+++++....+. +...+.++ |+|+|++|+++ ..++.|++||+++++.+..++.. ...++++|+|
T Consensus       232 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       232 AVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             EEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            999998877665543 34568888 99999999886 46899999999999998888754 5669999886

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0307|consensus

Probab=99.63  E-value=7.4e-16  Score=113.84  Aligned_cols=137  Identities=18%  Similarity=0.183  Sum_probs=102.2

Q ss_pred             EEEEEeeCCCe----EEEEcCCCcEEEEEecCC--cccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCC
Q psy1859          17 RCIKCFPNKQG----YVLSSIEGRAAVEYLDTG--PEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSD   89 (162)
Q Consensus        17 ~~i~~~~~~~~----l~~~~~~g~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d   89 (162)
                      ..++|.+.+..    ++.|..||.|.+|+-+..  ......+....         .|.+.|..++|++.+ ++|++|+.|
T Consensus        68 ~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~---------~h~G~V~gLDfN~~q~nlLASGa~~  138 (1049)
T KOG0307|consen   68 NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKS---------KHTGPVLGLDFNPFQGNLLASGADD  138 (1049)
T ss_pred             eeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhc---------ccCCceeeeeccccCCceeeccCCC
Confidence            56899987766    777889999999655432  11111222222         266699999999987 699999999


Q ss_pred             CeEEEEeCCCccceeeee--ecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCceeeeeeccCCC--ceeEEEecCC
Q psy1859          90 GYVNIWDGFNKKRLCQFH--RYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT--GITSLCFSYD  162 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~--~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~v~~~pd  162 (162)
                      |.|.|||+.+-+.-....  .....|.++ |+. ....|++++.+|...|||+|.++.+-.+..+.+  .+..++|+||
T Consensus       139 geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~  217 (1049)
T KOG0307|consen  139 GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD  217 (1049)
T ss_pred             CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence            999999999855444432  235678899 988 455788888999999999999887777765544  4778999996

>KOG0301|consensus

Probab=99.62  E-value=1.1e-14  Score=103.14  Aligned_cols=125  Identities=20%  Similarity=0.335  Sum_probs=101.3

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      ..+.|++...++. +++|++|.++++|...      +....+.+|+.         +|.+++.-|++ .+++|+.|..|+
T Consensus       102 snVC~ls~~~~~~-~iSgSWD~TakvW~~~------~l~~~l~gH~a---------sVWAv~~l~e~-~~vTgsaDKtIk  164 (745)
T KOG0301|consen  102 SNVCSLSIGEDGT-LISGSWDSTAKVWRIG------ELVYSLQGHTA---------SVWAVASLPEN-TYVTGSADKTIK  164 (745)
T ss_pred             cceeeeecCCcCc-eEecccccceEEecch------hhhcccCCcch---------heeeeeecCCC-cEEeccCcceee
Confidence            3344444444555 8999999999997543      23333555554         89999999987 899999999999


Q ss_pred             EEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEe
Q psy1859          94 IWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF  159 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~  159 (162)
                      +|.-  ++.++++.+|...|..+ +-+++ .+++++.||.|+.|++ ++.++.++.+|++.|++++.
T Consensus       165 lWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~  227 (745)
T KOG0301|consen  165 LWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISM  227 (745)
T ss_pred             eccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEe
Confidence            9986  68899999999999999 66654 4788889999999999 88999999999999999984

>KOG0290|consensus

Probab=99.61  E-value=3.4e-14  Score=91.85  Aligned_cols=140  Identities=16%  Similarity=0.219  Sum_probs=102.3

Q ss_pred             cccccEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecC
Q psy1859          11 SLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGS   88 (162)
Q Consensus        11 ~~~~~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~   88 (162)
                      ....++++..|+. +-+++.+.+-|-+..||+++... .......+-.         |...|..++|..++ ..|++.+.
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~-~~~vkTQLIA---------HDKEV~DIaf~~~s~~~FASvga  217 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV-SGTVKTQLIA---------HDKEVYDIAFLKGSRDVFASVGA  217 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeecc-ccceeeEEEe---------cCcceeEEEeccCccceEEEecC
Confidence            3445566777886 56788899999999998777541 0112222333         55579999999977 79999999


Q ss_pred             CCeEEEEeCCCcc------------------------------------------------ceeeeeecccceeEE-EcC
Q psy1859          89 DGYVNIWDGFNKK------------------------------------------------RLCQFHRYDTGITSL-FHQ  119 (162)
Q Consensus        89 d~~v~~wd~~~~~------------------------------------------------~~~~~~~~~~~v~~~-~~~  119 (162)
                      ||.+++||++.-.                                                ++.++++|.+.|..+ |.|
T Consensus       218 DGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaP  297 (364)
T KOG0290|consen  218 DGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAP  297 (364)
T ss_pred             CCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecC
Confidence            9999999998321                                                233456788999999 999


Q ss_pred             -CCCEEEEecCCCeEEEEeCCCce------eeeeeccCCCceeEEEecC
Q psy1859         120 -EYNTFATGGSDGYVNIWDGFNKK------RLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus       120 -~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~v~~v~~~p  161 (162)
                       ....+++++.|..+.+||+.+..      ++..+. -.+.|..+.|+|
T Consensus       298 hS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~  345 (364)
T KOG0290|consen  298 HSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSS  345 (364)
T ss_pred             CCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecc
Confidence             55689999999999999997532      222233 355789999985

>KOG2055|consensus

Probab=99.61  E-value=2.4e-14  Score=97.34  Aligned_cols=139  Identities=19%  Similarity=0.181  Sum_probs=104.6

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      +.+.+..++|+.+++.|++++.+|.|.+|++.  .  ..+...+......        .-++++.++++.+||+|+..|.
T Consensus       343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~--~--~~~~~rf~D~G~v--------~gts~~~S~ng~ylA~GS~~Gi  410 (514)
T KOG2055|consen  343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLR--Q--NSCLHRFVDDGSV--------HGTSLCISLNGSYLATGSDSGI  410 (514)
T ss_pred             eccEEeeEEEecCCcEEEEEcCCceEEEEecC--C--cceEEEEeecCcc--------ceeeeeecCCCceEEeccCcce
Confidence            55778889999999999999999988775544  4  2333333322211        2356777889999999999999


Q ss_pred             EEEEeCCC------ccceeeeeecccceeEE-EcCCCCEEEEec--CCCeEEEEeCCCceeeeeecc---CCCceeEEEe
Q psy1859          92 VNIWDGFN------KKRLCQFHRYDTGITSL-FHQEYNTFATGG--SDGYVNIWDGFNKKRLCQFHR---YDTGITSLCF  159 (162)
Q Consensus        92 v~~wd~~~------~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~---~~~~v~~v~~  159 (162)
                      |.|||.++      .+++..+..-...|+.+ |++++++|+.++  .+..+++-.+.+......+..   .-+.|+|++|
T Consensus       411 VNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aF  490 (514)
T KOG2055|consen  411 VNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAF  490 (514)
T ss_pred             EEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEe
Confidence            99999764      36777777778899999 999999999887  456899888876655554432   2347899999


Q ss_pred             cCC
Q psy1859         160 SYD  162 (162)
Q Consensus       160 ~pd  162 (162)
                      +|.
T Consensus       491 SP~  493 (514)
T KOG2055|consen  491 SPN  493 (514)
T ss_pred             cCC
Confidence            994

>KOG0303|consensus

Probab=99.60  E-value=1.7e-14  Score=96.46  Aligned_cols=97  Identities=21%  Similarity=0.305  Sum_probs=85.3

Q ss_pred             ccceeceEEEEecCCC-CEEEEecCCCeEEEEeCCCc-------cceeeeeecccceeEE-EcC-CCCEEEEecCCCeEE
Q psy1859          65 IEKIYPVNAISFHQEY-NTFATGGSDGYVNIWDGFNK-------KRLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVN  134 (162)
Q Consensus        65 ~~~~~~v~~~~~~p~~-~~l~~~~~d~~v~~wd~~~~-------~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~  134 (162)
                      .+|.++|..++|+|.. +.|++|+.|.+|.+|++..+       +++..+.+|...|..+ |+| ..+.|++++.|++|.
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~  157 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVS  157 (472)
T ss_pred             cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEE
Confidence            3577799999999976 88999999999999998764       4566788999999999 999 456889999999999


Q ss_pred             EEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         135 IWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       135 iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +||+.+|+.+.++. |.+-|++++|+.|
T Consensus       158 iWnv~tgeali~l~-hpd~i~S~sfn~d  184 (472)
T KOG0303|consen  158 IWNVGTGEALITLD-HPDMVYSMSFNRD  184 (472)
T ss_pred             EEeccCCceeeecC-CCCeEEEEEeccC
Confidence            99999999888887 9999999999865

>KOG1009|consensus

Probab=99.60  E-value=6.7e-15  Score=98.49  Aligned_cols=125  Identities=13%  Similarity=0.117  Sum_probs=101.1

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCC------c------ccceeeeeeeeeeeccCcccceeceEEEEe
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTG------P------EMQKMKYAFKCHRIKEDGIEKIYPVNAISF   76 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~------~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   76 (162)
                      .+.+...+.++.|+|+|+.|++|+++|.+.+|.....      +      ........+.+         |...+..++|
T Consensus        61 Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~---------h~~diydL~W  131 (434)
T KOG1009|consen   61 LSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG---------HRDDIYDLAW  131 (434)
T ss_pred             ccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecc---------cccchhhhhc
Confidence            3445566788899999999999999999999876510      0      11222333334         4447999999


Q ss_pred             cCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCce
Q psy1859          77 HQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKK  142 (162)
Q Consensus        77 ~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~  142 (162)
                      +|+++.+++++.|..+++||+..|+....+..|...+..+ |.|.++++++-+.|...+++.+...+
T Consensus       132 s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~  198 (434)
T KOG1009|consen  132 SPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ  198 (434)
T ss_pred             cCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeee
Confidence            9999999999999999999999999999999999999999 99999999999999877777765443

>KOG2110|consensus

Probab=99.60  E-value=1.7e-13  Score=90.94  Aligned_cols=127  Identities=20%  Similarity=0.232  Sum_probs=95.2

Q ss_pred             CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe--cCCCeEEEEeCCCccc
Q psy1859          25 KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG--GSDGYVNIWDGFNKKR  102 (162)
Q Consensus        25 ~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~--~~d~~v~~wd~~~~~~  102 (162)
                      .++|+++-.+. |.|  +|.+.  .+...++...+.      +...+.++.+++.+.+++--  ...|.|.+||+.+-++
T Consensus        97 r~RLvV~Lee~-IyI--ydI~~--MklLhTI~t~~~------n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~  165 (391)
T KOG2110|consen   97 RKRLVVCLEES-IYI--YDIKD--MKLLHTIETTPP------NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP  165 (391)
T ss_pred             cceEEEEEccc-EEE--Eeccc--ceeehhhhccCC------CccceEeeccCCCCceEEecCCCCCceEEEEEccccee
Confidence            45666665554 777  55544  444444433311      22256677667666677753  3469999999999999


Q ss_pred             eeeeeecccceeEE-EcCCCCEEEEecCCCe-EEEEeCCCceeeeeeccC--CCceeEEEecCC
Q psy1859         103 LCQFHRYDTGITSL-FHQEYNTFATGGSDGY-VNIWDGFNKKRLCQFHRY--DTGITSLCFSYD  162 (162)
Q Consensus       103 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~--~~~v~~v~~~pd  162 (162)
                      +..+..|++.+.++ |+++|.++||+++.|+ |||+.+.+|+.+..+..-  ...|.+++|+||
T Consensus       166 v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d  229 (391)
T KOG2110|consen  166 VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD  229 (391)
T ss_pred             eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence            99999999999999 9999999999999987 599999999988887632  346899999986

>KOG0268|consensus

Probab=99.60  E-value=5.5e-15  Score=97.84  Aligned_cols=138  Identities=21%  Similarity=0.290  Sum_probs=98.8

Q ss_pred             eccccccEEEEEEeeCC-CeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859           9 ESSLKFQTRCIKCFPNK-QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~-~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      ...+...+.|++=+|.. ..+++|+.||.|+||+..  +  ......+.+|..         .|.++.++.  ..+++++
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnls--q--R~~~~~f~AH~G---------~V~Gi~v~~--~~~~tvg  126 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLS--Q--RECIRTFKAHEG---------LVRGICVTQ--TSFFTVG  126 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehh--h--hhhhheeecccC---------ceeeEEecc--cceEEec
Confidence            35566677888888876 678999999999995544  3  456667777665         688888876  5677888


Q ss_pred             CCCeEEEEeCC--------------------------------------CccceeeeeecccceeEE-EcC-CCCEEEEe
Q psy1859          88 SDGYVNIWDGF--------------------------------------NKKRLCQFHRYDTGITSL-FHQ-EYNTFATG  127 (162)
Q Consensus        88 ~d~~v~~wd~~--------------------------------------~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~  127 (162)
                      .|.+|+.|.+.                                      ...++..+.-....+.++ |+| ....|+++
T Consensus       127 dDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~  206 (433)
T KOG0268|consen  127 DDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC  206 (433)
T ss_pred             CCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeee
Confidence            88877777632                                      222333333334467788 999 44577777


Q ss_pred             cCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         128 GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       128 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +.|+.|.+||++++.+++.+. -...-+.|+|+|+
T Consensus       207 ~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPe  240 (433)
T KOG0268|consen  207 ASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPE  240 (433)
T ss_pred             ccCCceEEEecccCCccceee-eeccccceecCcc
Confidence            899999999999998877664 2345577888883

>KOG1539|consensus

Probab=99.59  E-value=3.2e-14  Score=102.69  Aligned_cols=128  Identities=14%  Similarity=0.121  Sum_probs=98.3

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCccccee-----eeeeeeeee-----------------------cc
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKM-----KYAFKCHRI-----------------------KE   62 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~-----~~~~~~~~~-----------------------~~   62 (162)
                      .+++.++.++..--++.+++++.+|.+.+|++.........     ..-...|+.                       -+
T Consensus       491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR  570 (910)
T KOG1539|consen  491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR  570 (910)
T ss_pred             cccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH
Confidence            46778888888888888999999999999887654311000     000001111                       11


Q ss_pred             CcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCC-CeEEEEeCC
Q psy1859          63 DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSD-GYVNIWDGF  139 (162)
Q Consensus        63 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d-~~i~iwd~~  139 (162)
                      ...+|...+++++|||+|+.+++++.|++|++||+.++.++-.+. -..+.+.+ |+|+|++|+|...| .-|++|.=+
T Consensus       571 ~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  571 EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             HhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence            345688899999999999999999999999999999998887664 46778889 99999999999988 679999744

>KOG2048|consensus

Probab=99.58  E-value=1.9e-13  Score=96.68  Aligned_cols=141  Identities=23%  Similarity=0.289  Sum_probs=105.2

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ....+.+.+++.+|.+..++.|++||.+..  ++...  .+..+.-.-.+       ..++|.+++|+|++..+++|+.|
T Consensus       107 d~~gg~IWsiai~p~~~~l~IgcddGvl~~--~s~~p--~~I~~~r~l~r-------q~sRvLslsw~~~~~~i~~Gs~D  175 (691)
T KOG2048|consen  107 DSNGGAIWSIAINPENTILAIGCDDGVLYD--FSIGP--DKITYKRSLMR-------QKSRVLSLSWNPTGTKIAGGSID  175 (691)
T ss_pred             cCCCcceeEEEeCCccceEEeecCCceEEE--EecCC--ceEEEEeeccc-------ccceEEEEEecCCccEEEecccC
Confidence            345577899999999999999999995544  55443  22222211111       12379999999999999999999


Q ss_pred             CeEEEEeCCCccceeeee-----e---cccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEec
Q psy1859          90 GYVNIWDGFNKKRLCQFH-----R---YDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS  160 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~-----~---~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  160 (162)
                      |.|++||..++..+....     .   ...-+.++ |-.++ .+++|+..|+|++||...+..++.+..|...|.+++.+
T Consensus       176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~  254 (691)
T KOG2048|consen  176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVA  254 (691)
T ss_pred             ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEc
Confidence            999999999987665222     1   12234555 44444 68999999999999999999999888999999999877


Q ss_pred             CC
Q psy1859         161 YD  162 (162)
Q Consensus       161 pd  162 (162)
                      ++
T Consensus       255 ~~  256 (691)
T KOG2048|consen  255 DN  256 (691)
T ss_pred             CC
Confidence            64

>KOG1188|consensus

Probab=99.58  E-value=7e-14  Score=91.95  Aligned_cols=140  Identities=20%  Similarity=0.329  Sum_probs=101.2

Q ss_pred             ccccEEEEEEee--CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec--
Q psy1859          12 LKFQTRCIKCFP--NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG--   87 (162)
Q Consensus        12 ~~~~~~~i~~~~--~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~--   87 (162)
                      .+.++..+.|..  ....+.+|+.||+|++|+.....  ....+....++..        +..+++.+-.++++++|+  
T Consensus        69 ~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~--e~a~~~~~~~~~~--------~f~~ld~nck~~ii~~GtE~  138 (376)
T KOG1188|consen   69 PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA--ESARISWTQQSGT--------PFICLDLNCKKNIIACGTEL  138 (376)
T ss_pred             CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch--hhhheeccCCCCC--------cceEeeccCcCCeEEecccc
Confidence            445556677665  46678999999999998777655  3344444444422        678888877778888875  


Q ss_pred             --CCCeEEEEeCCCccc-eeee-eecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCcee---eeeeccCCCceeEEE
Q psy1859          88 --SDGYVNIWDGFNKKR-LCQF-HRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKKR---LCQFHRYDTGITSLC  158 (162)
Q Consensus        88 --~d~~v~~wd~~~~~~-~~~~-~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~v~  158 (162)
                        .+-.|.+||+|..+. +..+ ..|...|+++ |+| +..+|++|+-||.+.++|++....   +.....|.+.|..+.
T Consensus       139 ~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~ig  218 (376)
T KOG1188|consen  139 TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIG  218 (376)
T ss_pred             ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeee
Confidence              367899999998765 5444 4688999999 999 778999999999999999975431   222224666677777


Q ss_pred             ecC
Q psy1859         159 FSY  161 (162)
Q Consensus       159 ~~p  161 (162)
                      |..
T Consensus       219 w~~  221 (376)
T KOG1188|consen  219 WLS  221 (376)
T ss_pred             eec
Confidence            753

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.58  E-value=2.9e-13  Score=90.96  Aligned_cols=121  Identities=12%  Similarity=0.119  Sum_probs=88.1

Q ss_pred             CeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEE-EEecCCCeEEEEeCCCcccee
Q psy1859          26 QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF-ATGGSDGYVNIWDGFNKKRLC  104 (162)
Q Consensus        26 ~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~d~~v~~wd~~~~~~~~  104 (162)
                      +.+++++.|+.+.+|+.+  +  .+....+..+.          .+.+++|+|++..+ ++++.++.|++||..+++...
T Consensus         2 ~~~~s~~~d~~v~~~d~~--t--~~~~~~~~~~~----------~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~   67 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTA--T--LEVTRTFPVGQ----------RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG   67 (300)
T ss_pred             cEEEEecCCCEEEEEECC--C--CceEEEEECCC----------CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE
Confidence            567888999999996554  3  23333333332          36789999999765 567789999999999887776


Q ss_pred             eeeecccceeEE-EcCCCCEEEEe-cCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         105 QFHRYDTGITSL-FHQEYNTFATG-GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       105 ~~~~~~~~v~~~-~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .+..+. .+..+ |+|+++.++++ ..++.+++||+++++.+..+.. ...+.+++|+||
T Consensus        68 ~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~d  125 (300)
T TIGR03866        68 TLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPD  125 (300)
T ss_pred             eccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCC
Confidence            665433 34567 99999977655 5689999999998887776653 334677888876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0322|consensus

Probab=99.57  E-value=3.1e-14  Score=90.85  Aligned_cols=131  Identities=15%  Similarity=0.224  Sum_probs=97.2

Q ss_pred             EEEEcCCCcEEEEEecCCcccceeeeeeeeeee-ccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCc--cc-e
Q psy1859          28 YVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI-KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNK--KR-L  103 (162)
Q Consensus        28 l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~--~~-~  103 (162)
                      +++|..+|.+.+|+....+    .+..++.... ...-..|..+|.++.+.+....=++|+.+..+..|.+...  .+ +
T Consensus       168 llaGyEsghvv~wd~S~~~----~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~  243 (323)
T KOG0322|consen  168 LLAGYESGHVVIWDLSTGD----KIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI  243 (323)
T ss_pred             EEEeccCCeEEEEEccCCc----eeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence            5566778999997776542    2222222111 1112236668999999987666678888888999988753  22 1


Q ss_pred             -eeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         104 -CQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       104 -~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                       ..+.-.+..+..+ +.||++.++|++.|+.||||..++.+++..++.|...|++++|+||
T Consensus       244 ~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd  304 (323)
T KOG0322|consen  244 RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD  304 (323)
T ss_pred             cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC
Confidence             1223345667778 9999999999999999999999999999999999999999999997

>KOG2048|consensus

Probab=99.57  E-value=5.3e-13  Score=94.52  Aligned_cols=138  Identities=14%  Similarity=0.179  Sum_probs=110.8

Q ss_pred             cccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeE
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV   92 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v   92 (162)
                      +..|.+++++.+.+.||++-.+|.|.||.....   .-....+.++...        .|.+++|++ +..|.+.+.+|.|
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~---w~~~~vi~g~~dr--------sIE~L~W~e-~~RLFS~g~sg~i   92 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN---WFLEPVIHGPEDR--------SIESLAWAE-GGRLFSSGLSGSI   92 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCC---ceeeEEEecCCCC--------ceeeEEEcc-CCeEEeecCCceE
Confidence            456789999999999999999999999665532   3333344454433        699999996 4566688889999


Q ss_pred             EEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeee--eccCCCceeEEEecCC
Q psy1859          93 NIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQ--FHRYDTGITSLCFSYD  162 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~pd  162 (162)
                      .-||+.++++...+....+.+.++ .+|.+..++.|++||.+...+...++....  +...++.|.+++|+|+
T Consensus        93 ~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~  165 (691)
T KOG2048|consen   93 TEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT  165 (691)
T ss_pred             EEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCC
Confidence            999999999999999999999999 999999999999999888888877765332  2234578999999985

>KOG1034|consensus

Probab=99.56  E-value=5.7e-13  Score=87.45  Aligned_cols=141  Identities=13%  Similarity=0.112  Sum_probs=103.0

Q ss_pred             ccEEEEEEee----CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC----CCEEEE
Q psy1859          14 FQTRCIKCFP----NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE----YNTFAT   85 (162)
Q Consensus        14 ~~~~~i~~~~----~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~l~~   85 (162)
                      .++..++|++    +...+++......+.+|......  ....  +.....+    .|......++|+-+    ..++++
T Consensus        39 ~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--~ir~--lq~y~D~----d~~Esfytcsw~yd~~~~~p~la~  110 (385)
T KOG1034|consen   39 KPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--GIRL--LQSYADE----DHDESFYTCSWSYDSNTGNPFLAA  110 (385)
T ss_pred             CccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--ceee--eeeccCC----CCCcceEEEEEEecCCCCCeeEEe
Confidence            4456677774    22233333444567775544332  1111  1111110    14446778888553    368889


Q ss_pred             ecCCCeEEEEeCCCccceeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCceeeeee---ccCCCceeEEEec
Q psy1859          86 GGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQF---HRYDTGITSLCFS  160 (162)
Q Consensus        86 ~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~v~~~  160 (162)
                      ++.-|.|++.|+.+++....+.+|+..|..+ ++| +.+++++++.|..|++|++++..++..+   .+|.+.|.++.|+
T Consensus       111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~  190 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS  190 (385)
T ss_pred             ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence            9999999999999999999999999999999 999 5579999999999999999999998887   5799999999999


Q ss_pred             CC
Q psy1859         161 YD  162 (162)
Q Consensus       161 pd  162 (162)
                      +|
T Consensus       191 ~~  192 (385)
T KOG1034|consen  191 LD  192 (385)
T ss_pred             CC
Confidence            75

>KOG0322|consensus

Probab=99.54  E-value=3.4e-14  Score=90.65  Aligned_cols=122  Identities=11%  Similarity=0.202  Sum_probs=98.2

Q ss_pred             eeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859           8 RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      ....++.++.++.+.+....=+.|+.+..+..|.++-..+..+........+.         .|..+..-||++.+++++
T Consensus       200 ~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknp---------Gv~gvrIRpD~KIlATAG  270 (323)
T KOG0322|consen  200 PNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNP---------GVSGVRIRPDGKILATAG  270 (323)
T ss_pred             chhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCC---------CccceEEccCCcEEeecc
Confidence            34556777888888877666677777778888777655432332222222111         588999999999999999


Q ss_pred             CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeC
Q psy1859          88 SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDG  138 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~  138 (162)
                      .|+.+++|.-++..++..++-|...+.++ |+|+..+++.++.|++|.+|++
T Consensus       271 WD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  271 WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999999999999 9999999999999999999986

>KOG0642|consensus

Probab=99.53  E-value=2.4e-13  Score=94.47  Aligned_cols=150  Identities=15%  Similarity=0.161  Sum_probs=109.9

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ..++++|-|+++.+++..+++|+.||+|+.|..-++. ..--.+  ..........+|.+.|..+++|+....|++++.|
T Consensus       341 raH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~-dp~ds~--dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~D  417 (577)
T KOG0642|consen  341 RAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQ-DPDDSY--DPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSD  417 (577)
T ss_pred             ecccCceEEEEecCCceEEEeeccCceeeeeccCCCC-Cccccc--CcchhccceeccccceeeeeecccccceeeecCC
Confidence            3467899999999999999999999999997554211 000000  0001111123466689999999998899999999


Q ss_pred             CeEEEEeCCCccce--e------------------------------------------eeee-------cccceeEE-E
Q psy1859          90 GYVNIWDGFNKKRL--C------------------------------------------QFHR-------YDTGITSL-F  117 (162)
Q Consensus        90 ~~v~~wd~~~~~~~--~------------------------------------------~~~~-------~~~~v~~~-~  117 (162)
                      |++++|+.....++  .                                          .+..       ....+..+ +
T Consensus       418 gTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs  497 (577)
T KOG0642|consen  418 GTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVS  497 (577)
T ss_pred             ceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEe
Confidence            99999987644320  0                                          0000       01133455 8


Q ss_pred             cCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         118 HQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       118 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +|.+.+.+++..|+.|+++|..+++.+.....|...++++++.|+
T Consensus       498 ~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~n  542 (577)
T KOG0642|consen  498 HPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPN  542 (577)
T ss_pred             cCCCCeeEecccCCceecccccccccchheeeccceecceeecCC
Confidence            888999999999999999999999999999999999999999874

>KOG2445|consensus

Probab=99.53  E-value=1.1e-12  Score=85.44  Aligned_cols=142  Identities=11%  Similarity=0.099  Sum_probs=98.0

Q ss_pred             ccccEEEEEEee--CCCeEEEEcCCCcEEEEEecCCccc-----ceeeeeeeeeeeccCcccceeceEEEEecCC--CCE
Q psy1859          12 LKFQTRCIKCFP--NKQGYVLSSIEGRAAVEYLDTGPEM-----QKMKYAFKCHRIKEDGIEKIYPVNAISFHQE--YNT   82 (162)
Q Consensus        12 ~~~~~~~i~~~~--~~~~l~~~~~~g~i~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~   82 (162)
                      +.+.+-.|.|-+  -|+.+++++.|+++.||.=+..+..     .....++...+         ..|+.+.|.|.  |-.
T Consensus        58 h~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsr---------ssV~DV~FaP~hlGLk  128 (361)
T KOG2445|consen   58 HDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSR---------SSVTDVKFAPKHLGLK  128 (361)
T ss_pred             cCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCC---------cceeEEEecchhcceE
Confidence            345566678754  3899999999999999654322211     11222222222         27999999996  578


Q ss_pred             EEEecCCCeEEEEeCCCc------cceeeee-------ecccceeEE-EcC---CCCEEEEecCC-----CeEEEEeCCC
Q psy1859          83 FATGGSDGYVNIWDGFNK------KRLCQFH-------RYDTGITSL-FHQ---EYNTFATGGSD-----GYVNIWDGFN  140 (162)
Q Consensus        83 l~~~~~d~~v~~wd~~~~------~~~~~~~-------~~~~~v~~~-~~~---~~~~l~~~~~d-----~~i~iwd~~~  140 (162)
                      +++++.||.++||+.-..      .++.++.       .+.....|+ |+|   ...+++.|+.+     +.++||....
T Consensus       129 lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e  208 (361)
T KOG2445|consen  129 LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE  208 (361)
T ss_pred             EEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence            999999999999977542      3333333       345567788 987   45578888655     4788887653


Q ss_pred             c----eeeeeeccCCCceeEEEecCC
Q psy1859         141 K----KRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       141 ~----~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .    ..+.++..|.++|++|+|+|+
T Consensus       209 ~~rKw~kva~L~d~~dpI~di~wAPn  234 (361)
T KOG2445|consen  209 NGRKWLKVAELPDHTDPIRDISWAPN  234 (361)
T ss_pred             CcceeeeehhcCCCCCcceeeeeccc
Confidence            3    246667799999999999995

>KOG0321|consensus

Probab=99.53  E-value=8.5e-14  Score=98.06  Aligned_cols=121  Identities=20%  Similarity=0.213  Sum_probs=86.2

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCC
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDG   90 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~   90 (162)
                      +.+.+..+.|-|....|++++.|.++++|+.....  ......+.+         |.+.|.+++|+|.. ..|++|+.||
T Consensus        99 H~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~--l~G~~~~~G---------H~~SvkS~cf~~~n~~vF~tGgRDg  167 (720)
T KOG0321|consen   99 HKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR--LVGGRLNLG---------HTGSVKSECFMPTNPAVFCTGGRDG  167 (720)
T ss_pred             ccceeEeeccCCCceeEEEccCCceeeeeeeccce--eecceeecc---------cccccchhhhccCCCcceeeccCCC
Confidence            45667789999966788999999999997665543  222222334         55589999999987 7899999999


Q ss_pred             eEEEEeCCCcc--------------------c-------eeeeeecccceeE----EEcCCCCEEEEecC-CCeEEEEeC
Q psy1859          91 YVNIWDGFNKK--------------------R-------LCQFHRYDTGITS----LFHQEYNTFATGGS-DGYVNIWDG  138 (162)
Q Consensus        91 ~v~~wd~~~~~--------------------~-------~~~~~~~~~~v~~----~~~~~~~~l~~~~~-d~~i~iwd~  138 (162)
                      .+.|||++-..                    +       +.....+...+..    ++..|...|++++. |+.|+|||+
T Consensus       168 ~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDL  247 (720)
T KOG0321|consen  168 EILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDL  247 (720)
T ss_pred             cEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEee
Confidence            99999997321                    0       1111222333333    35567788888886 999999999


Q ss_pred             CCcee
Q psy1859         139 FNKKR  143 (162)
Q Consensus       139 ~~~~~  143 (162)
                      ++...
T Consensus       248 Rk~~~  252 (720)
T KOG0321|consen  248 RKNYT  252 (720)
T ss_pred             ccccc
Confidence            97643

>KOG1523|consensus

Probab=99.53  E-value=1.8e-13  Score=89.45  Aligned_cols=143  Identities=15%  Similarity=0.144  Sum_probs=105.0

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      +.+...++.|.|+|..+.+++++.|...+||..- ..+..+....+.-++.         +++++.|+|.++.|++|+.-
T Consensus        52 s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~-~~~~WkptlvLlRiNr---------AAt~V~WsP~enkFAVgSga  121 (361)
T KOG1523|consen   52 SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP-SGGTWKPTLVLLRINR---------AATCVKWSPKENKFAVGSGA  121 (361)
T ss_pred             hhhCcceeEEeecCCCCceeEccCCCCccccccC-CCCeeccceeEEEecc---------ceeeEeecCcCceEEeccCc
Confidence            4455677889999999999999999999997652 2223555444444433         79999999999999999999


Q ss_pred             CeEEEEeCCCccce---e-eeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCC-----C-------------ceeeee
Q psy1859          90 GYVNIWDGFNKKRL---C-QFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGF-----N-------------KKRLCQ  146 (162)
Q Consensus        90 ~~v~~wd~~~~~~~---~-~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~-----~-------------~~~~~~  146 (162)
                      ..|.+|-++...--   + .-+.+.+.|+++ |+|++-+|++|+.|+..+|+..-     .             |..+..
T Consensus       122 r~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E  201 (361)
T KOG1523|consen  122 RLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE  201 (361)
T ss_pred             cEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh
Confidence            99999988764321   1 112457889999 99999999999999999998632     1             112333


Q ss_pred             eccCCCceeEEEecCC
Q psy1859         147 FHRYDTGITSLCFSYD  162 (162)
Q Consensus       147 ~~~~~~~v~~v~~~pd  162 (162)
                      +..-.+.|..+.|+|+
T Consensus       202 ~~~~ggwvh~v~fs~s  217 (361)
T KOG1523|consen  202 ASSSGGWVHGVLFSPS  217 (361)
T ss_pred             hccCCCceeeeEeCCC
Confidence            3334567888888864

>KOG4378|consensus

Probab=99.52  E-value=5.5e-13  Score=91.95  Aligned_cols=141  Identities=13%  Similarity=0.153  Sum_probs=106.4

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEec
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGG   87 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~   87 (162)
                      ...++..|+++.++-...++++++..|.|.|  ....+  .....+|.....        ..|.-+.|+|.. .+|.+++
T Consensus       117 lkdh~stvt~v~YN~~DeyiAsvs~gGdiii--h~~~t--~~~tt~f~~~sg--------qsvRll~ys~skr~lL~~as  184 (673)
T KOG4378|consen  117 LKDHQSTVTYVDYNNTDEYIASVSDGGDIII--HGTKT--KQKTTTFTIDSG--------QSVRLLRYSPSKRFLLSIAS  184 (673)
T ss_pred             ccCCcceeEEEEecCCcceeEEeccCCcEEE--Eeccc--CccccceecCCC--------CeEEEeecccccceeeEeec
Confidence            3445566788889998999999999999999  44443  222223332211        157899999987 5666889


Q ss_pred             CCCeEEEEeCCCccceeee-eecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          88 SDGYVNIWDGFNKKRLCQF-HRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~~-~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .+|.|.+||+....++..+ ..|..+...+ |+| +..++++.+-|..|.+||.+..+....+. ...+...++|+++
T Consensus       185 d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~  261 (673)
T KOG4378|consen  185 DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSEC  261 (673)
T ss_pred             cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCC
Confidence            9999999999987776655 4678888888 999 66688899999999999999877666664 3447788888875

>KOG1272|consensus

Probab=99.51  E-value=2.5e-14  Score=97.46  Aligned_cols=120  Identities=20%  Similarity=0.231  Sum_probs=98.9

Q ss_pred             EEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEE
Q psy1859          16 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW   95 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~w   95 (162)
                      +..+.|-|..-.|++++..|.++-  .|...  .+.+..+.....         .+..+.-+|.+..+-+|..+|+|.+|
T Consensus       212 v~rLeFLPyHfLL~~~~~~G~L~Y--~DVS~--GklVa~~~t~~G---------~~~vm~qNP~NaVih~GhsnGtVSlW  278 (545)
T KOG1272|consen  212 VARLEFLPYHFLLVAASEAGFLKY--QDVST--GKLVASIRTGAG---------RTDVMKQNPYNAVIHLGHSNGTVSLW  278 (545)
T ss_pred             hhhhcccchhheeeecccCCceEE--Eeech--hhhhHHHHccCC---------ccchhhcCCccceEEEcCCCceEEec
Confidence            445678888777888888898886  56655  444444333322         57888889999999999999999999


Q ss_pred             eCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859          96 DGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        96 d~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      .....+++..+.+|.++|.++ ++++|+|++|++.|..++|||++....++++.
T Consensus       279 SP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~  332 (545)
T KOG1272|consen  279 SPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR  332 (545)
T ss_pred             CCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceee
Confidence            999999999999999999999 99999999999999999999999877655554

>KOG1063|consensus

Probab=99.51  E-value=5.2e-13  Score=94.90  Aligned_cols=141  Identities=16%  Similarity=0.281  Sum_probs=99.8

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      +...|+.++||||+++|++.+.|.++.+|.... +  ....+.+..      .+.|..-|-+++|+|++.+|+|+++|..
T Consensus       571 HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~-~--~~~e~~fa~------~k~HtRIIWdcsW~pde~~FaTaSRDK~  641 (764)
T KOG1063|consen  571 HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQE-D--IKDEFRFAC------LKAHTRIIWDCSWSPDEKYFATASRDKK  641 (764)
T ss_pred             cceEEEEEEECCCCcEEEEeecCceEEeeeeec-c--cchhhhhcc------ccccceEEEEcccCcccceeEEecCCce
Confidence            445578899999999999999999999965522 1  112222211      2336668999999999999999999999


Q ss_pred             EEEEeCCCc--cceeee--eecccceeEE-EcC-----CCCEEEEecCCCeEEEEeCCC-------ce--e---eeeecc
Q psy1859          92 VNIWDGFNK--KRLCQF--HRYDTGITSL-FHQ-----EYNTFATGGSDGYVNIWDGFN-------KK--R---LCQFHR  149 (162)
Q Consensus        92 v~~wd~~~~--~~~~~~--~~~~~~v~~~-~~~-----~~~~l~~~~~d~~i~iwd~~~-------~~--~---~~~~~~  149 (162)
                      |.+|.....  +.+..+  ..+...++.+ +.|     .+..++.|-+.|.|.+|....       +.  .   ......
T Consensus       642 VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~  721 (764)
T KOG1063|consen  642 VKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIG  721 (764)
T ss_pred             EEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccC
Confidence            999998876  444432  2456778877 555     233778888999999999641       11  1   111124


Q ss_pred             CCCceeEEEecC
Q psy1859         150 YDTGITSLCFSY  161 (162)
Q Consensus       150 ~~~~v~~v~~~p  161 (162)
                      |.+.|+.+.|.|
T Consensus       722 ~~~aV~rl~w~p  733 (764)
T KOG1063|consen  722 PDSAVNRLLWRP  733 (764)
T ss_pred             hHHhhheeEecc
Confidence            667888888886

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.50  E-value=5.6e-12  Score=87.53  Aligned_cols=139  Identities=22%  Similarity=0.315  Sum_probs=106.7

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcC-CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCC-EEEEe
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN-TFATG   86 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~   86 (162)
                      .......+..++++|+++.++.++. ++.+++|+...    ......+.+|.         ..|.+++|+|++. .++++
T Consensus       151 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------~~v~~~~~~~~~~~~~~~~  217 (466)
T COG2319         151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT----GKPLSTLAGHT---------DPVSSLAFSPDGGLLIASG  217 (466)
T ss_pred             EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC----CceEEeeccCC---------CceEEEEEcCCcceEEEEe
Confidence            3445566778999999998888875 99999965543    23333334433         3799999999987 55555


Q ss_pred             cCCCeEEEEeCCCcccee-eeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCcee-eeeeccCCCceeEEEecC
Q psy1859          87 GSDGYVNIWDGFNKKRLC-QFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKR-LCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~~~~-~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~v~~~p  161 (162)
                      +.|+.+.+||...+..+. .+..|.... .. |+|++.++++++.|+.+++|+++.... +..+..|...+.++.|.|
T Consensus       218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  294 (466)
T COG2319         218 SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP  294 (466)
T ss_pred             cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC
Confidence            999999999988777766 577776665 44 999998999999999999999986664 444467888999999987

>KOG1538|consensus

Probab=99.48  E-value=1.3e-12  Score=93.19  Aligned_cols=133  Identities=20%  Similarity=0.293  Sum_probs=97.3

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEE
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI   94 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~   94 (162)
                      -+..++|-|||..++.+..+. +.+  +|++.  .....++++|..         .|.+++|+.+|+.|++|+.|..|.+
T Consensus        14 ci~d~afkPDGsqL~lAAg~r-lli--yD~nd--G~llqtLKgHKD---------tVycVAys~dGkrFASG~aDK~VI~   79 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSR-LLV--YDTSD--GTLLQPLKGHKD---------TVYCVAYAKDGKRFASGSADKSVII   79 (1081)
T ss_pred             chheeEECCCCceEEEecCCE-EEE--EeCCC--cccccccccccc---------eEEEEEEccCCceeccCCCceeEEE
Confidence            467799999999988876553 445  77766  566677777765         7999999999999999999999999


Q ss_pred             EeCCCccc--------ee--ee-------------------------eecc--cceeEE-EcCCCCEEEEecCCCeEEEE
Q psy1859          95 WDGFNKKR--------LC--QF-------------------------HRYD--TGITSL-FHQEYNTFATGGSDGYVNIW  136 (162)
Q Consensus        95 wd~~~~~~--------~~--~~-------------------------~~~~--~~v~~~-~~~~~~~l~~~~~d~~i~iw  136 (162)
                      |+.+-...        ++  .+                         ..+.  ..+.++ |..||++++.|-.+|+|.+-
T Consensus        80 W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiR  159 (1081)
T KOG1538|consen   80 WTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIR  159 (1081)
T ss_pred             ecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEee
Confidence            98653210        00  00                         0111  234555 99999999999999999998


Q ss_pred             eCCCceeeeeec---cCCCceeEEEecCC
Q psy1859         137 DGFNKKRLCQFH---RYDTGITSLCFSYD  162 (162)
Q Consensus       137 d~~~~~~~~~~~---~~~~~v~~v~~~pd  162 (162)
                      +- +++....++   +..++|++++|+|.
T Consensus       160 Nk-~gEek~~I~Rpgg~Nspiwsi~~~p~  187 (1081)
T KOG1538|consen  160 NK-NGEEKVKIERPGGSNSPIWSICWNPS  187 (1081)
T ss_pred             cC-CCCcceEEeCCCCCCCCceEEEecCC
Confidence            75 343322233   46679999999984

>KOG0649|consensus

Probab=99.48  E-value=4.9e-12  Score=80.29  Aligned_cols=130  Identities=15%  Similarity=0.296  Sum_probs=94.0

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEE
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI   94 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~   94 (162)
                      .|.++...|..+.+++++.|+.++-  +|.++  .+....+++|..         .|.++.--.....+++|+.||.+++
T Consensus       116 eINam~ldP~enSi~~AgGD~~~y~--~dlE~--G~i~r~~rGHtD---------YvH~vv~R~~~~qilsG~EDGtvRv  182 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGVIYQ--VDLED--GRIQREYRGHTD---------YVHSVVGRNANGQILSGAEDGTVRV  182 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeEEEE--EEecC--CEEEEEEcCCcc---------eeeeeeecccCcceeecCCCccEEE
Confidence            4677888888777888888887776  55555  566667777765         7999988555678999999999999


Q ss_pred             EeCCCccceeeeeecc----------cceeEEEcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEec
Q psy1859          95 WDGFNKKRLCQFHRYD----------TGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS  160 (162)
Q Consensus        95 wd~~~~~~~~~~~~~~----------~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  160 (162)
                      ||.++++.+..+...+          .+|-++ .-+..+++.| ....+.+|+++..++..++. ...++..+.|.
T Consensus       183 Wd~kt~k~v~~ie~yk~~~~lRp~~g~wigal-a~~edWlvCG-gGp~lslwhLrsse~t~vfp-ipa~v~~v~F~  255 (325)
T KOG0649|consen  183 WDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL-AVNEDWLVCG-GGPKLSLWHLRSSESTCVFP-IPARVHLVDFV  255 (325)
T ss_pred             EeccccceeEEeccccChhhcCcccCceeEEE-eccCceEEec-CCCceeEEeccCCCceEEEe-cccceeEeeee
Confidence            9999998887765332          233333 2245566655 45689999999988887775 34456666554

>KOG1408|consensus

Probab=99.46  E-value=1.3e-12  Score=93.78  Aligned_cols=119  Identities=16%  Similarity=0.118  Sum_probs=104.2

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      -+..+..+++.|..++++++..|..|+|  |+.+.  .+....|++.+.      |.+...-+...|.|.++++...|..
T Consensus       595 ~ktTlYDm~Vdp~~k~v~t~cQDrniri--f~i~s--gKq~k~FKgs~~------~eG~lIKv~lDPSgiY~atScsdkt  664 (1080)
T KOG1408|consen  595 SKTTLYDMAVDPTSKLVVTVCQDRNIRI--FDIES--GKQVKSFKGSRD------HEGDLIKVILDPSGIYLATSCSDKT  664 (1080)
T ss_pred             ccceEEEeeeCCCcceEEEEecccceEE--Eeccc--cceeeeeccccc------CCCceEEEEECCCccEEEEeecCCc
Confidence            3455678999999999999999999999  66655  455566676554      5567888899999999999999999


Q ss_pred             EEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCC
Q psy1859          92 VNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFN  140 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~  140 (162)
                      +.++|+.+++++..+.+|...|+.+ |.+|-+.|++.+.||-|.||.+..
T Consensus       665 l~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  665 LCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             eEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            9999999999999999999999999 999999999999999999999753

>KOG1963|consensus

Probab=99.46  E-value=4.1e-12  Score=92.26  Aligned_cols=117  Identities=18%  Similarity=0.276  Sum_probs=92.3

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCC-cccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTG-PEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV   92 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v   92 (162)
                      ..++|.+++|+++++++|..||.|.+| .|.. +........+.-         |...|.+++|+++|.+|++|+..+.+
T Consensus       206 f~~t~~~~spn~~~~Aa~d~dGrI~vw-~d~~~~~~~~t~t~lHW---------H~~~V~~L~fS~~G~~LlSGG~E~VL  275 (792)
T KOG1963|consen  206 FNITCVALSPNERYLAAGDSDGRILVW-RDFGSSDDSETCTLLHW---------HHDEVNSLSFSSDGAYLLSGGREGVL  275 (792)
T ss_pred             ccceeEEeccccceEEEeccCCcEEEE-eccccccccccceEEEe---------cccccceeEEecCCceEeecccceEE
Confidence            346889999999999999999999997 3433 111111112222         44479999999999999999999999


Q ss_pred             EEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc
Q psy1859          93 NIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK  141 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~  141 (162)
                      .+|.+.+++ .+-++.-.+++..+ ++||+.+.+....|+.|.+-...+.
T Consensus       276 v~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl  324 (792)
T KOG1963|consen  276 VLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL  324 (792)
T ss_pred             EEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence            999999987 44455667899999 9999999999999999998876443

>KOG4328|consensus

Probab=99.45  E-value=2.8e-12  Score=87.37  Aligned_cols=141  Identities=17%  Similarity=0.183  Sum_probs=98.2

Q ss_pred             ccccEEEEEEeeCC-CeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          12 LKFQTRCIKCFPNK-QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        12 ~~~~~~~i~~~~~~-~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      ++..|..++++|.. .+|++++.|++++|||...-..+..+......         |...|.+..|||.+-.|++.+.|.
T Consensus       321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~---------HrrsV~sAyFSPs~gtl~TT~~D~  391 (498)
T KOG4328|consen  321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLP---------HRRSVNSAYFSPSGGTLLTTCQDN  391 (498)
T ss_pred             hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccc---------ccceeeeeEEcCCCCceEeeccCC
Confidence            34478899999965 56889999999999766533322221222222         444899999999987799999999


Q ss_pred             eEEEEeCC----Cccceeeeee---cccceeEE---EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCC-ceeEE-E
Q psy1859          91 YVNIWDGF----NKKRLCQFHR---YDTGITSL---FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT-GITSL-C  158 (162)
Q Consensus        91 ~v~~wd~~----~~~~~~~~~~---~~~~v~~~---~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~v-~  158 (162)
                      .|+|||..    .-.+...+..   +..+++-+   |.|+-.++++|..-..|-|+|-..++.+..+..... .|.++ .
T Consensus       392 ~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~  471 (498)
T KOG4328|consen  392 EIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNE  471 (498)
T ss_pred             ceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccccccccee
Confidence            99999984    2334444432   12334433   999999999999888999999988887776543322 45443 5


Q ss_pred             ecC
Q psy1859         159 FSY  161 (162)
Q Consensus       159 ~~p  161 (162)
                      |+|
T Consensus       472 ~HP  474 (498)
T KOG4328|consen  472 FHP  474 (498)
T ss_pred             ecc
Confidence            554

>KOG1188|consensus

Probab=99.45  E-value=1.4e-12  Score=85.95  Aligned_cols=124  Identities=23%  Similarity=0.300  Sum_probs=89.8

Q ss_pred             CeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecC--CCCEEEEecCCCeEEEEeCCCccce
Q psy1859          26 QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ--EYNTFATGGSDGYVNIWDGFNKKRL  103 (162)
Q Consensus        26 ~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~l~~~~~d~~v~~wd~~~~~~~  103 (162)
                      ..++++...|.|++|+++.    .+....+++++.         .+..++|..  ....+.+|+.||.|++||+|.....
T Consensus        41 ~~vav~lSngsv~lyd~~t----g~~l~~fk~~~~---------~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~  107 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGT----GQLLEEFKGPPA---------TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES  107 (376)
T ss_pred             eeEEEEecCCeEEEEeccc----hhhhheecCCCC---------cccceEEecCCCCCeeEEeccCCeEEEEEeecchhh
Confidence            3478888899999966554    345555666655         577788866  3478999999999999999986554


Q ss_pred             eeee--ecc-cceeEE-EcCCCCEEEEec----CCCeEEEEeCCCcee-eeee-ccCCCceeEEEecCC
Q psy1859         104 CQFH--RYD-TGITSL-FHQEYNTFATGG----SDGYVNIWDGFNKKR-LCQF-HRYDTGITSLCFSYD  162 (162)
Q Consensus       104 ~~~~--~~~-~~v~~~-~~~~~~~l~~~~----~d~~i~iwd~~~~~~-~~~~-~~~~~~v~~v~~~pd  162 (162)
                      .++.  .+. .+..++ ..-.++.+++|.    .+-.+.+||+|..+. +..+ ..|.+.|++++|+|.
T Consensus       108 a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~  176 (376)
T KOG1188|consen  108 ARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS  176 (376)
T ss_pred             hheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC
Confidence            4443  333 234444 444677888875    467899999997765 5544 579999999999984

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=4.4e-12  Score=89.69  Aligned_cols=135  Identities=10%  Similarity=-0.023  Sum_probs=87.9

Q ss_pred             ccccccEEEEEEeeCCCeEEEEc-CCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe-c
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG-G   87 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~   87 (162)
                      ...+++...++|+|||+.|+.++ .+|...||.++...+..   ..+..+.         ..+....|+|+|+.|+.. .
T Consensus       244 ~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~---~~lt~~~---------~~~~~~~wSpDG~~i~f~s~  311 (429)
T PRK01742        244 ASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP---SQLTSGA---------GNNTEPSWSPDGQSILFTSD  311 (429)
T ss_pred             ecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe---EeeccCC---------CCcCCEEECCCCCEEEEEEC
Confidence            34556667789999999888764 68888898888754221   2222222         247789999999876654 4


Q ss_pred             CCCeEEEEeCCCc-cceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          88 SDGYVNIWDGFNK-KRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        88 ~d~~v~~wd~~~~-~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .++...+|++... .....+ .+..  ... |+|+|++++..+.++ +.+||+.+++.......+  ...++.|+||
T Consensus       312 ~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPd  382 (429)
T PRK01742        312 RSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPN  382 (429)
T ss_pred             CCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCC
Confidence            6777888876542 222222 2222  456 999999998887765 555999887654322222  2356778886

>KOG0644|consensus

Probab=99.44  E-value=5.5e-14  Score=101.90  Aligned_cols=96  Identities=19%  Similarity=0.267  Sum_probs=91.2

Q ss_pred             cceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceee
Q psy1859          66 EKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRL  144 (162)
Q Consensus        66 ~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~  144 (162)
                      +|..+|.|+.|...|+++++|+.|..++||...++.++....+|.+.++.+ .+.+..++++++.|..|++|.+.++.++
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv  267 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV  267 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchH
Confidence            455589999999999999999999999999999999999999999999999 8888889999999999999999999999


Q ss_pred             eeeccCCCceeEEEecC
Q psy1859         145 CQFHRYDTGITSLCFSY  161 (162)
Q Consensus       145 ~~~~~~~~~v~~v~~~p  161 (162)
                      ..+.+|++.|++++|+|
T Consensus       268 svLrghtgavtaiafsP  284 (1113)
T KOG0644|consen  268 SVLRGHTGAVTAIAFSP  284 (1113)
T ss_pred             HHHhccccceeeeccCc
Confidence            99999999999999998

>KOG3881|consensus

Probab=99.44  E-value=2.4e-12  Score=86.15  Aligned_cols=131  Identities=18%  Similarity=0.173  Sum_probs=102.8

Q ss_pred             EEEEEeeC--CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEE
Q psy1859          17 RCIKCFPN--KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI   94 (162)
Q Consensus        17 ~~i~~~~~--~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~   94 (162)
                      +.+.|-+.  ...|++++.-+.+++|+-..+   .+++..+.-...         ++.++...|+++++++|..-+.+..
T Consensus       206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q---RRPV~~fd~~E~---------~is~~~l~p~gn~Iy~gn~~g~l~~  273 (412)
T KOG3881|consen  206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQ---RRPVAQFDFLEN---------PISSTGLTPSGNFIYTGNTKGQLAK  273 (412)
T ss_pred             ccceecCCCCCceEEEEecceeEEEecCccc---CcceeEeccccC---------cceeeeecCCCcEEEEecccchhhe
Confidence            45778776  788999999999999544422   445555444333         7999999999999999999999999


Q ss_pred             EeCCCccceee-eeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEec
Q psy1859          95 WDGFNKKRLCQ-FHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS  160 (162)
Q Consensus        95 wd~~~~~~~~~-~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  160 (162)
                      ||++.++.... +.+..+.++++ .+|.++++++++-|..++|+|+++.+++.... -.+.+++|-+.
T Consensus       274 FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~  340 (412)
T KOG3881|consen  274 FDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLR  340 (412)
T ss_pred             ecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEec
Confidence            99999887665 77888999999 99999999999999999999999866554332 23345555543

>KOG2110|consensus

Probab=99.44  E-value=1.3e-11  Score=82.20  Aligned_cols=112  Identities=18%  Similarity=0.240  Sum_probs=86.8

Q ss_pred             EEEEEEeeCCCeEEEE--cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe-E
Q psy1859          16 TRCIKCFPNKQGYVLS--SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY-V   92 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~--~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~-v   92 (162)
                      +.+++.++.+.+++.=  ...|.|.|  ||..+  .+.+..+..|..         .+.+++|+++|.+||+++..|+ |
T Consensus       132 l~AlS~n~~n~ylAyp~s~t~GdV~l--~d~~n--l~~v~~I~aH~~---------~lAalafs~~G~llATASeKGTVI  198 (391)
T KOG2110|consen  132 LCALSPNNANCYLAYPGSTTSGDVVL--FDTIN--LQPVNTINAHKG---------PLAALAFSPDGTLLATASEKGTVI  198 (391)
T ss_pred             eEeeccCCCCceEEecCCCCCceEEE--EEccc--ceeeeEEEecCC---------ceeEEEECCCCCEEEEeccCceEE
Confidence            3344455555677653  34588999  55544  555666666655         7999999999999999998876 5


Q ss_pred             EEEeCCCccceeeeeecc--cceeEE-EcCCCCEEEEecCCCeEEEEeCCC
Q psy1859          93 NIWDGFNKKRLCQFHRYD--TGITSL-FHQEYNTFATGGSDGYVNIWDGFN  140 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~--~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~  140 (162)
                      +++.+.+|+.+.+++...  ..+.++ |+|++++|++.+..++|+++.+..
T Consensus       199 RVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  199 RVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             EEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            799999999999887543  356677 999999999999999999999864

>KOG0650|consensus

Probab=99.43  E-value=2.5e-11  Score=85.56  Aligned_cols=141  Identities=14%  Similarity=0.117  Sum_probs=96.4

Q ss_pred             eeeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCC--EE
Q psy1859           6 QRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN--TF   83 (162)
Q Consensus         6 ~~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~l   83 (162)
                      ......+++.+.+|+..|.|.+|++|+.||+++||.+..    ..++.......          .|.+++|+|.+.  .|
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T----gRcvr~~~~d~----------~I~~vaw~P~~~~~vL  458 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT----GRCVRTVQFDS----------EIRSVAWNPLSDLCVL  458 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeec----ceEEEEEeecc----------eeEEEEecCCCCceeE
Confidence            344566788899999999999999999999999965544    44555443333          499999999873  33


Q ss_pred             EEecCCCeEEEEeCCCcc-------------------------------------ceeeeeecccceeEE-EcCCCCEEE
Q psy1859          84 ATGGSDGYVNIWDGFNKK-------------------------------------RLCQFHRYDTGITSL-FHQEYNTFA  125 (162)
Q Consensus        84 ~~~~~d~~v~~wd~~~~~-------------------------------------~~~~~~~~~~~v~~~-~~~~~~~l~  125 (162)
                      +++ ....+.+-+..-|.                                     -++..-.|...|..+ ||..|.||+
T Consensus       459 AvA-~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYla  537 (733)
T KOG0650|consen  459 AVA-VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLA  537 (733)
T ss_pred             EEE-ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEE
Confidence            333 33334443322110                                     011112456788899 999999999


Q ss_pred             EecCC---CeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859         126 TGGSD---GYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus       126 ~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      +...+   ..|.|+++...+...-|..-.+.|.++.|+|
T Consensus       538 tV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHP  576 (733)
T KOG0650|consen  538 TVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHP  576 (733)
T ss_pred             EeccCCCcceEEEEecccccccCchhhcCCceeEEEecC
Confidence            98754   4789999976655555554566788888887

>KOG1310|consensus

Probab=99.42  E-value=1.4e-12  Score=91.05  Aligned_cols=118  Identities=12%  Similarity=0.077  Sum_probs=91.0

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeee-eeeeeccCcccceeceEEEEecCC--CCEEEEec
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAF-KCHRIKEDGIEKIYPVNAISFHQE--YNTFATGG   87 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~   87 (162)
                      .+.+-+.|+.|+.+|.+|++|++|-.+.||+.-  .  .+....+ .+         |.+-|.++.|-|.  .+++++|.
T Consensus        48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~--~--~KllhsI~Tg---------HtaNIFsvKFvP~tnnriv~sgA  114 (758)
T KOG1310|consen   48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPF--E--YKLLHSISTG---------HTANIFSVKFVPYTNNRIVLSGA  114 (758)
T ss_pred             cccceecceeecCCCCEEeecCCcceEEeecch--h--cceeeeeecc---------cccceeEEeeeccCCCeEEEecc
Confidence            344556778899999999999999999995543  3  3333322 23         5557999999885  37899999


Q ss_pred             CCCeEEEEeCCCc----------cceeeeeecccceeEE-EcCCC-CEEEEecCCCeEEEEeCCCc
Q psy1859          88 SDGYVNIWDGFNK----------KRLCQFHRYDTGITSL-FHQEY-NTFATGGSDGYVNIWDGFNK  141 (162)
Q Consensus        88 ~d~~v~~wd~~~~----------~~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~i~iwd~~~~  141 (162)
                      .|..|+++|+...          .....+.+|...|..+ -.|++ ..+.++++||+|+-+|++..
T Consensus       115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp  180 (758)
T KOG1310|consen  115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP  180 (758)
T ss_pred             CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence            9999999999852          2344556777888888 77877 67889999999999999864

>KOG0642|consensus

Probab=99.42  E-value=2e-12  Score=90.00  Aligned_cols=119  Identities=17%  Similarity=0.260  Sum_probs=94.3

Q ss_pred             EEEEEEeeCCCeEEEEcCCCcEEEEEecC---C-cccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          16 TRCIKCFPNKQGYVLSSIEGRAAVEYLDT---G-PEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~g~i~i~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      ++.+.+.|....|++++.+|.+.+|.+..   . ....+.++++.+|..         +|.|+++.+.+..+.+|+-||.
T Consensus       297 ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~g---------PVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  297 IRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEG---------PVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             hhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccC---------ceEEEEecCCceEEEeeccCce
Confidence            45567888888999999999999987721   1 122456677777655         8999999999999999999999


Q ss_pred             EEEEeCCCc----------cceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCcee
Q psy1859          92 VNIWDGFNK----------KRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKR  143 (162)
Q Consensus        92 v~~wd~~~~----------~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~  143 (162)
                      |+.|++...          .....+.+|...+..+ +|+....|++++.||++++|+......
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~  430 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP  430 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence            999965421          1233566889999999 999888999999999999999865544

>KOG2106|consensus

Probab=99.41  E-value=8.3e-12  Score=86.30  Aligned_cols=138  Identities=13%  Similarity=0.187  Sum_probs=101.5

Q ss_pred             cccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeE
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV   92 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v   92 (162)
                      ..++++++|+|+|.+|+.|+.|+.|.||..+...  .+....-+++.         .+++.++|+++++++.+-+.|-.|
T Consensus       447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g--~~y~r~~k~~g---------s~ithLDwS~Ds~~~~~~S~d~ei  515 (626)
T KOG2106|consen  447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG--RKYSRVGKCSG---------SPITHLDWSSDSQFLVSNSGDYEI  515 (626)
T ss_pred             CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC--cEEEEeeeecC---------ceeEEeeecCCCceEEeccCceEE
Confidence            5678999999999999999999999998888765  33333323333         279999999999999999999999


Q ss_pred             EEEeCCCccceeeee------------------ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc---eeeeeeccC
Q psy1859          93 NIWDGFNKKRLCQFH------------------RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK---KRLCQFHRY  150 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~------------------~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~  150 (162)
                      ..|.....+.+...+                  .+...+..+ -+.+.+++++|...|.|++|...-.   ...+.+.+|
T Consensus       516 LyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~gh  595 (626)
T KOG2106|consen  516 LYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGH  595 (626)
T ss_pred             EEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccc
Confidence            999443222221111                  122233334 5567889999999999999986422   235667789


Q ss_pred             CCceeEEEecC
Q psy1859         151 DTGITSLCFSY  161 (162)
Q Consensus       151 ~~~v~~v~~~p  161 (162)
                      .+-|++++|.-
T Consensus       596 s~~vt~V~Fl~  606 (626)
T KOG2106|consen  596 SSHVTNVAFLC  606 (626)
T ss_pred             cceeEEEEEee
Confidence            99999999963

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=4.9e-12  Score=89.44  Aligned_cols=132  Identities=16%  Similarity=0.096  Sum_probs=81.0

Q ss_pred             cccEEEEEEeeCCCeEEEEcCCC---cEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe-cC
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIEG---RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG-GS   88 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~   88 (162)
                      ...+...+|+|+|+.++.++.++   .+.+  |+..++..+.+..+.++            ...++|+|+|+.|+.+ +.
T Consensus       203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i--~dl~tg~~~~l~~~~g~------------~~~~~wSPDG~~La~~~~~  268 (429)
T PRK01742        203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVV--HDLRSGARKVVASFRGH------------NGAPAFSPDGSRLAFASSK  268 (429)
T ss_pred             CCccccceEcCCCCEEEEEEecCCCcEEEE--EeCCCCceEEEecCCCc------------cCceeECCCCCEEEEEEec
Confidence            44567899999999998876542   4666  45443223333222222            3468999999887765 46


Q ss_pred             CCeEEE--EeCCCccceeeeeecccceeEE-EcCCCCEEEEec-CCCeEEEEeCCCc-eeeeeeccCCCceeEEEecCC
Q psy1859          89 DGYVNI--WDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGG-SDGYVNIWDGFNK-KRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        89 d~~v~~--wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +|.+.|  ||+.+++ ...+..+...+... |+|||+.++.++ .++...||++... .....+ .+..  .++.|+||
T Consensus       269 ~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpD  343 (429)
T PRK01742        269 DGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISAD  343 (429)
T ss_pred             CCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCC
Confidence            776555  5665544 44455555566777 999999766554 6777788876432 222222 3332  45677776

>KOG4227|consensus

Probab=99.41  E-value=9.2e-12  Score=83.99  Aligned_cols=142  Identities=13%  Similarity=0.012  Sum_probs=104.8

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCc--ccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGP--EMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      +.+-|.+|.|+.++++|++|+.|..+.+|..+..-  ...+++ .+.++.       |..-|.+++|......+.+|..+
T Consensus        55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI-~~~~~~-------H~SNIF~L~F~~~N~~~~SG~~~  126 (609)
T KOG4227|consen   55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI-GVMEHP-------HRSNIFSLEFDLENRFLYSGERW  126 (609)
T ss_pred             hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCc-eeccCc-------cccceEEEEEccCCeeEecCCCc
Confidence            34556778899999999999999999998776421  111222 223332       44579999999988999999999


Q ss_pred             CeEEEEeCCCccceeeee--ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCce-eeee--eccCCCceeEEEecC
Q psy1859          90 GYVNIWDGFNKKRLCQFH--RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKK-RLCQ--FHRYDTGITSLCFSY  161 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~--~~~~~~~v~~v~~~p  161 (162)
                      ++|.+-|+.+.+.+..+.  ...+.|+.+ .+|....|++.+.++.|.+||.+... ....  +.........+.|+|
T Consensus       127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P  204 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP  204 (609)
T ss_pred             ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence            999999999887776664  234689999 99988899999999999999998654 2111  122334566677766

>KOG0650|consensus

Probab=99.41  E-value=1.4e-12  Score=91.67  Aligned_cols=111  Identities=22%  Similarity=0.399  Sum_probs=89.9

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      ..+..++.+|.|..+++++.|+.+..+++|..+   +....++.|..         .+++++||+.-.+|++|+.||.+.
T Consensus       608 kwiS~msihp~GDnli~gs~d~k~~WfDldlss---kPyk~lr~H~~---------avr~Va~H~ryPLfas~sdDgtv~  675 (733)
T KOG0650|consen  608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS---KPYKTLRLHEK---------AVRSVAFHKRYPLFASGSDDGTVI  675 (733)
T ss_pred             eeeeeeeecCCCCeEEEecCCCeeEEEEcccCc---chhHHhhhhhh---------hhhhhhhccccceeeeecCCCcEE
Confidence            457789999999999999999999997777654   34445555554         799999999999999999999999


Q ss_pred             EEeCC------Cc---cceeeeeecccc----eeEE-EcCCCCEEEEecCCCeEEEE
Q psy1859          94 IWDGF------NK---KRLCQFHRYDTG----ITSL-FHQEYNTFATGGSDGYVNIW  136 (162)
Q Consensus        94 ~wd~~------~~---~~~~~~~~~~~~----v~~~-~~~~~~~l~~~~~d~~i~iw  136 (162)
                      ++--.      ..   -+++.+.+|...    |..+ |||...+|++++.||+|++|
T Consensus       676 Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  676 VFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             EEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            88432      22   245666777554    7777 99999999999999999998

>KOG0280|consensus

Probab=99.41  E-value=2.6e-11  Score=78.78  Aligned_cols=133  Identities=19%  Similarity=0.213  Sum_probs=96.9

Q ss_pred             EEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCeEEEE
Q psy1859          17 RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVNIW   95 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v~~w   95 (162)
                      -++.|++.+..++++..+|.+.+  .+......+.+...+.|..         .+.-..|+... +++.+|+.|+.+..|
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~--v~~t~~~le~vq~wk~He~---------E~Wta~f~~~~pnlvytGgDD~~l~~~  193 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISG--VYETEMVLEKVQTWKVHEF---------EAWTAKFSDKEPNLVYTGGDDGSLSCW  193 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEE--Eecceeeeeecccccccce---------eeeeeecccCCCceEEecCCCceEEEE
Confidence            35668888888999888899885  3322211333334455544         67888887765 788999999999999


Q ss_pred             eCCC-ccceee-eeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCC-ceeeeeeccCCCceeEEEecC
Q psy1859          96 DGFN-KKRLCQ-FHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFN-KKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        96 d~~~-~~~~~~-~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      |++. ++.+.. .+.|...|.++ -+| .+.+++||+.|-.|++||.|+ ++++..- .-.+.|+.+.++|
T Consensus       194 D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p  263 (339)
T KOG0280|consen  194 DIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHP  263 (339)
T ss_pred             EecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecc
Confidence            9994 444443 45688899999 555 788999999999999999994 4444332 3457888888887

>KOG2919|consensus

Probab=99.40  E-value=6.8e-12  Score=82.49  Aligned_cols=131  Identities=15%  Similarity=0.193  Sum_probs=96.0

Q ss_pred             eCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeC-CCcc
Q psy1859          23 PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDG-FNKK  101 (162)
Q Consensus        23 ~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~-~~~~  101 (162)
                      |+..++++.+.+..|++|+.  .+++.+..+..-.|..      ...+..+++|+|+|.+|++| ....|+++|+ +.|.
T Consensus       121 P~t~l~a~ssr~~PIh~wda--ftG~lraSy~~ydh~d------e~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr  191 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDA--FTGKLRASYRAYDHQD------EYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGR  191 (406)
T ss_pred             CccceeeeccccCceeeeec--cccccccchhhhhhHH------hhhhheeEEecCCCCeEeec-ccceEEEeeccCCCC
Confidence            66788999999999999554  4432443332212211      11256799999999888776 5778999999 5554


Q ss_pred             ceeee-------eecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         102 RLCQF-------HRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       102 ~~~~~-------~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .....       .+..+.+.++ |+| +.+.++.++....+-||.-....++..+-+|.+.|+.++|++|
T Consensus       192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed  261 (406)
T KOG2919|consen  192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED  261 (406)
T ss_pred             CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC
Confidence            32211       1235567777 999 6679999999999999998888888888999999999999986

>KOG2315|consensus

Probab=99.40  E-value=9.2e-12  Score=86.78  Aligned_cols=130  Identities=16%  Similarity=0.264  Sum_probs=92.6

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCC--CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIE--GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~--g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      -+++|.++.|+|+++.|+++..-  ..+.|  +|..   ...++.+...           +-..+-|+|.|++++.++.+
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvti--fnlr---~~~v~df~eg-----------pRN~~~fnp~g~ii~lAGFG  332 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTI--FNLR---GKPVFDFPEG-----------PRNTAFFNPHGNIILLAGFG  332 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccceEEE--EcCC---CCEeEeCCCC-----------CccceEECCCCCEEEEeecC
Confidence            36899999999999988876554  45566  5543   3455554332           45689999999988877654


Q ss_pred             ---CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecC------CCeEEEEeCCCceeeeeeccCCCceeEEEe
Q psy1859          90 ---GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS------DGYVNIWDGFNKKRLCQFHRYDTGITSLCF  159 (162)
Q Consensus        90 ---~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~  159 (162)
                         |.+-+||+.+.+++..+....  .+.+ |+|||++++|+..      |+.++||+. +|..+.... ..+....++|
T Consensus       333 NL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~-f~sEL~qv~W  408 (566)
T KOG2315|consen  333 NLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKM-FKSELLQVEW  408 (566)
T ss_pred             CCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhh-hhHhHhheee
Confidence               899999999988887776433  3344 9999999999864      688999998 566555432 2224566666


Q ss_pred             cC
Q psy1859         160 SY  161 (162)
Q Consensus       160 ~p  161 (162)
                      -|
T Consensus       409 ~P  410 (566)
T KOG2315|consen  409 RP  410 (566)
T ss_pred             ee
Confidence            54

>KOG2321|consensus

Probab=99.38  E-value=8.5e-12  Score=87.46  Aligned_cols=145  Identities=17%  Similarity=0.185  Sum_probs=101.4

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      +.+.++..++....|++|+.+|.|.+|+-...+  ......+..+-....+......|+++.|+.+|-.+++|+.+|.+.
T Consensus       176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks--rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~  253 (703)
T KOG2321|consen  176 GELNVVSINEEHGLLACGTEDGVVEFWDPRDKS--RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVL  253 (703)
T ss_pred             ccceeeeecCccceEEecccCceEEEecchhhh--hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEE
Confidence            567888899988999999999999995543322  222222222211111222333599999999999999999999999


Q ss_pred             EEeCCCccceeeee-ecccceeEE-EcCC--CCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          94 IWDGFNKKRLCQFH-RYDTGITSL-FHQE--YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        94 ~wd~~~~~~~~~~~-~~~~~v~~~-~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +||++..+++..-. ...-++..+ |.+.  +..+++. ....++|||-.+|+....+.. ...+..+|+-|+
T Consensus       254 iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~  324 (703)
T KOG2321|consen  254 IYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPG  324 (703)
T ss_pred             EEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc-cCCcCceeeecC
Confidence            99999988765433 345677788 8763  3344444 667899999999998777653 445777777664

>KOG4547|consensus

Probab=99.38  E-value=3.2e-11  Score=84.46  Aligned_cols=124  Identities=15%  Similarity=0.125  Sum_probs=101.3

Q ss_pred             CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCcccee
Q psy1859          25 KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC  104 (162)
Q Consensus        25 ~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~  104 (162)
                      ...++.|...|.|-+  ++...  .+....+...       .|.+.|.++.++.+-..|.+++.|+.+..|+....+.++
T Consensus        70 t~~lvlgt~~g~v~~--ys~~~--g~it~~~st~-------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~  138 (541)
T KOG4547|consen   70 TSMLVLGTPQGSVLL--YSVAG--GEITAKLSTD-------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIR  138 (541)
T ss_pred             ceEEEeecCCccEEE--EEecC--CeEEEEEecC-------CCCCcceeeecccccCceEecCCceeEEEEecccceeee
Confidence            345777888888777  44444  2333332221       155589999999888999999999999999999999899


Q ss_pred             eeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859         105 QFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus       105 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      .+.+....+.++ .+|||+.+++++.  +|++||+.+++.+.++.+|.++|.++.|..
T Consensus       139 ~~~~~~~~~~sl~is~D~~~l~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~  194 (541)
T KOG4547|consen  139 IWKEQKPLVSSLCISPDGKILLTASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTT  194 (541)
T ss_pred             eeccCCCccceEEEcCCCCEEEeccc--eEEEEEccCceEEEEecCCCcceEEEEEEE
Confidence            998888889999 9999999998864  899999999999999999999999999853

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=3.8e-11  Score=84.92  Aligned_cols=138  Identities=11%  Similarity=-0.020  Sum_probs=87.2

Q ss_pred             ccccccEEEEEEeeCCCeEEE-EcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec-
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVL-SSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-   87 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~-~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-   87 (162)
                      ...++.....+|+|||+.++. .+.+|...||.++......   ..+..+.         .......|+|+|+.++..+ 
T Consensus       236 ~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~---~~lt~~~---------~~~~~~~wSpDG~~l~f~s~  303 (427)
T PRK02889        236 ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL---RRLTQSS---------GIDTEPFFSPDGRSIYFTSD  303 (427)
T ss_pred             ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCc---EECCCCC---------CCCcCeEEcCCCCEEEEEec
Confidence            345566678899999998875 5778888898888654221   1222121         1355678999998777554 


Q ss_pred             CCCeEEEEeC--CCccceeeeeecccceeEE-EcCCCCEEEEecCCC---eEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          88 SDGYVNIWDG--FNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDG---YVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        88 ~d~~v~~wd~--~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      .++...+|.+  ..++ ...+.......... |+|+|++++..+.++   .|.+||+.+++... +... .....+.|+|
T Consensus       304 ~~g~~~Iy~~~~~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~sp  380 (427)
T PRK02889        304 RGGAPQIYRMPASGGA-AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAP  380 (427)
T ss_pred             CCCCcEEEEEECCCCc-eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECC
Confidence            3455556654  4443 22222222334456 999999998776554   69999998776443 3322 2346778888


Q ss_pred             C
Q psy1859         162 D  162 (162)
Q Consensus       162 d  162 (162)
                      |
T Consensus       381 d  381 (427)
T PRK02889        381 N  381 (427)
T ss_pred             C
Confidence            6

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=8.4e-11  Score=83.22  Aligned_cols=136  Identities=12%  Similarity=0.020  Sum_probs=83.6

Q ss_pred             cccEEEEEEeeCCCeEEEEcC-CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe-cCCC
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG-GSDG   90 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d~   90 (162)
                      ...+...+|+|||+.++..+. .+.-.+|.++...+..+.+..+.+            .+..++|+|+|+.|+.. +.++
T Consensus       198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~------------~~~~~~~SPDG~~La~~~~~~g  265 (429)
T PRK03629        198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR------------HNGAPAFSPDGSKLAFALSKTG  265 (429)
T ss_pred             CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC------------CcCCeEECCCCCEEEEEEcCCC
Confidence            345678999999999887643 233334435544422333332222            24568999999877654 4444


Q ss_pred             --eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCC-C--eEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          91 --YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSD-G--YVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        91 --~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                        .|++||+.+++... +......+... |+|||+.++..+.+ +  .|.++|+.+++. ..+...........|+||
T Consensus       266 ~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpD  341 (429)
T PRK03629        266 SLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSD  341 (429)
T ss_pred             CcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCC
Confidence              58899998775433 33334456677 99999988766643 4  455557766543 333334445567888886

>KOG0644|consensus

Probab=99.36  E-value=5e-13  Score=97.08  Aligned_cols=109  Identities=12%  Similarity=0.210  Sum_probs=94.9

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      ..|.|+.+.-.|.++++|++|..++||..+  +  .......++|..         .++.++.+....++++++.|..|+
T Consensus       191 naVyca~fDrtg~~Iitgsdd~lvKiwS~e--t--~~~lAs~rGhs~---------ditdlavs~~n~~iaaaS~D~vIr  257 (1113)
T KOG0644|consen  191 NAVYCAIFDRTGRYIITGSDDRLVKIWSME--T--ARCLASCRGHSG---------DITDLAVSSNNTMIAAASNDKVIR  257 (1113)
T ss_pred             hheeeeeeccccceEeecCccceeeeeecc--c--hhhhccCCCCcc---------ccchhccchhhhhhhhcccCceEE
Confidence            346888888899999999999999997643  3  455666677655         699999998888999999999999


Q ss_pred             EEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCC
Q psy1859          94 IWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGF  139 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~  139 (162)
                      +|.+.++.++..+.+|.+.|+++ |+|-.    +.+.||++++||.+
T Consensus       258 vWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  258 VWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             EEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence            99999999999999999999999 99954    77799999999987

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=7.7e-11  Score=83.61  Aligned_cols=138  Identities=12%  Similarity=0.006  Sum_probs=87.4

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCC-CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEE-EecC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIE-GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA-TGGS   88 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~   88 (162)
                      .....+...+|+|||+.|+..+.. +.-.||.++..++..+.+   ....         ..+...+|+|+|+.|+ +.+.
T Consensus       199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l---~~~~---------g~~~~~~~SPDG~~la~~~~~  266 (435)
T PRK05137        199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELV---GNFP---------GMTFAPRFSPDGRKVVMSLSQ  266 (435)
T ss_pred             cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEe---ecCC---------CcccCcEECCCCCEEEEEEec
Confidence            344567889999999998887542 333344455544222222   1121         1467889999997665 5555


Q ss_pred             CC--eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecC-C--CeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          89 DG--YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS-D--GYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        89 d~--~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ++  .|++||+.+++. ..+..+....... |+|||+.++..+. +  ..|.++|+.+++. ..+..+...+....|+||
T Consensus       267 ~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~Spd  344 (435)
T PRK05137        267 GGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPR  344 (435)
T ss_pred             CCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCC
Confidence            54  477789887654 4444444555667 9999998877653 3  3688889876543 334334555677889886

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.36  E-value=2.2e-10  Score=78.55  Aligned_cols=116  Identities=10%  Similarity=0.028  Sum_probs=77.7

Q ss_pred             ccEEEEEEeeCCCeEEEEcC-CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEE-EecCCCe
Q psy1859          14 FQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA-TGGSDGY   91 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~~   91 (162)
                      ++...++++|+++++++++. ++.+.+|+++...........+...          .....++++|++++++ +...++.
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~p~g~~l~v~~~~~~~  149 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL----------EGCHSANIDPDNRTLWVPCLKEDR  149 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC----------CcccEeEeCCCCCEEEEeeCCCCE
Confidence            45567999999998887754 7889997776322111111111111          1367788999997775 5556799


Q ss_pred             EEEEeCCCcccee-----eee-ecccceeEE-EcCCCCEEEEecC-CCeEEEEeCC
Q psy1859          92 VNIWDGFNKKRLC-----QFH-RYDTGITSL-FHQEYNTFATGGS-DGYVNIWDGF  139 (162)
Q Consensus        92 v~~wd~~~~~~~~-----~~~-~~~~~v~~~-~~~~~~~l~~~~~-d~~i~iwd~~  139 (162)
                      |.+||+.+...+.     ... ........+ |+|+|++++++.. ++.|.+|++.
T Consensus       150 v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        150 IRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             EEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence            9999997632221     111 123445678 9999999988876 8999999997

>KOG2111|consensus

Probab=99.35  E-value=1.9e-10  Score=75.49  Aligned_cols=138  Identities=19%  Similarity=0.211  Sum_probs=95.1

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC--CCEEE-Ee
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE--YNTFA-TG   86 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~-~~   86 (162)
                      -.+..+|.++.+.++.  +++ -..+.|.||.+..+   .+....+......       ..+  ++..|.  ..+|+ -|
T Consensus        91 l~f~~~I~~V~l~r~r--iVv-vl~~~I~VytF~~n---~k~l~~~et~~NP-------kGl--C~~~~~~~k~~LafPg  155 (346)
T KOG2111|consen   91 LSFNSEIKAVKLRRDR--IVV-VLENKIYVYTFPDN---PKLLHVIETRSNP-------KGL--CSLCPTSNKSLLAFPG  155 (346)
T ss_pred             EEeccceeeEEEcCCe--EEE-EecCeEEEEEcCCC---hhheeeeecccCC-------Cce--EeecCCCCceEEEcCC
Confidence            3455667777777643  443 45678899877532   2333332222210       133  333443  23444 34


Q ss_pred             cCCCeEEEEeCCCccc--eeeeeecccceeEE-EcCCCCEEEEecCCCe-EEEEeCCCceeeeeecc--CCCceeEEEec
Q psy1859          87 GSDGYVNIWDGFNKKR--LCQFHRYDTGITSL-FHQEYNTFATGGSDGY-VNIWDGFNKKRLCQFHR--YDTGITSLCFS  160 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~~--~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~--~~~~v~~v~~~  160 (162)
                      ..-|+|++-|+...+.  ...+.+|.+.|.++ .+.+|..+||++..|+ |||||..+|+.++.+..  ....|++++||
T Consensus       156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS  235 (346)
T KOG2111|consen  156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS  235 (346)
T ss_pred             CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence            5679999999987544  57788999999999 9999999999999986 69999999999988863  23479999999


Q ss_pred             CC
Q psy1859         161 YD  162 (162)
Q Consensus       161 pd  162 (162)
                      ||
T Consensus       236 p~  237 (346)
T KOG2111|consen  236 PN  237 (346)
T ss_pred             CC
Confidence            97

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.34  E-value=3.8e-10  Score=78.38  Aligned_cols=142  Identities=25%  Similarity=0.341  Sum_probs=110.6

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEe-cCCCC-EEEEec
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF-HQEYN-TFATGG   87 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~p~~~-~l~~~~   87 (162)
                      ......+.++.+.+.+..++.++.++.+.+|+.+...   .....+.....        ..+..+.+ ++++. .++..+
T Consensus        62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~  130 (466)
T COG2319          62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE---KLIKSLEGLHD--------SSVSKLALSSPDGNSILLASS  130 (466)
T ss_pred             eeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc---eeEEEEeccCC--------CceeeEEEECCCcceEEeccC
Confidence            4456677888899999999999999999997766532   12333333211        13566666 77776 555544


Q ss_pred             C-CCeEEEEeCCC-ccceeeeeecccceeEE-EcCCCCEEEEecC-CCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          88 S-DGYVNIWDGFN-KKRLCQFHRYDTGITSL-FHQEYNTFATGGS-DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        88 ~-d~~v~~wd~~~-~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      . |+.+.+|+... ......+..|...+..+ |+|++++++.++. |+.+++|++..+..+..+..|...|.+++|+|+
T Consensus       131 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  209 (466)
T COG2319         131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPD  209 (466)
T ss_pred             CCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCC
Confidence            4 99999999998 67777888899999999 9999998888886 999999999988888888889999999999875

>KOG2111|consensus

Probab=99.33  E-value=1.2e-10  Score=76.46  Aligned_cols=74  Identities=16%  Similarity=0.245  Sum_probs=65.6

Q ss_pred             ceeceEEEEecCCCCEEEEecCCCe-EEEEeCCCccceeeeeec--ccceeEE-EcCCCCEEEEecCCCeEEEEeCCC
Q psy1859          67 KIYPVNAISFHQEYNTFATGGSDGY-VNIWDGFNKKRLCQFHRY--DTGITSL-FHQEYNTFATGGSDGYVNIWDGFN  140 (162)
Q Consensus        67 ~~~~v~~~~~~p~~~~l~~~~~d~~-v~~wd~~~~~~~~~~~~~--~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~  140 (162)
                      |...|.+++++-+|.++|+++..|+ |+|||..+|.++.+++..  ...+.++ |||++.+|+++++.|+++|+.++.
T Consensus       180 H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  180 HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            4458999999999999999998876 689999999999988743  4578899 999999999999999999999875

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=1.6e-10  Score=81.81  Aligned_cols=138  Identities=8%  Similarity=-0.047  Sum_probs=85.4

Q ss_pred             ccccccEEEEEEeeCCCeEEEE-cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      ...+++....+|+|||+.|+.. +.+|...||.+|..++..+..   ....         ..+....|+|+|+.|+..+.
T Consensus       239 ~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l---t~~~---------~~~~~~~wSPDG~~I~f~s~  306 (429)
T PRK03629        239 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV---TDGR---------SNNTEPTWFPDSQNLAYTSD  306 (429)
T ss_pred             cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc---cCCC---------CCcCceEECCCCCEEEEEeC
Confidence            3455666678999999988865 456665566677654222211   1111         14678999999988776654


Q ss_pred             C-C--eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCC---CeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          89 D-G--YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSD---GYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        89 d-~--~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      + +  .|+++|+.+++. ..+.......... |+|||++++..+.+   ..|.+||+.+++.. .+... ....+..|+|
T Consensus       307 ~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~Sp  383 (429)
T PRK03629        307 QAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAP  383 (429)
T ss_pred             CCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECC
Confidence            3 4  455557665543 3333333444566 99999998876543   35888999877643 33321 2234677888


Q ss_pred             C
Q psy1859         162 D  162 (162)
Q Consensus       162 d  162 (162)
                      |
T Consensus       384 D  384 (429)
T PRK03629        384 N  384 (429)
T ss_pred             C
Confidence            6

>KOG0321|consensus

Probab=99.31  E-value=9.7e-12  Score=87.96  Aligned_cols=109  Identities=16%  Similarity=0.254  Sum_probs=84.3

Q ss_pred             CCeEEEEcCCCcEEEEEecCCcccce-eeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccce
Q psy1859          25 KQGYVLSSIEGRAAVEYLDTGPEMQK-MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRL  103 (162)
Q Consensus        25 ~~~l~~~~~~g~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~  103 (162)
                      ...|+.+..+|.|.+  +|......+ ....+.      ....|..+|..+.|-|...+|++++.|.++++||++..+..
T Consensus        64 eHiLavadE~G~i~l--~dt~~~~fr~ee~~lk------~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~  135 (720)
T KOG0321|consen   64 EHILAVADEDGGIIL--FDTKSIVFRLEERQLK------KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV  135 (720)
T ss_pred             cceEEEecCCCceee--ecchhhhcchhhhhhc------ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee
Confidence            456888899999999  554331111 001111      23346679999999996689999999999999999998776


Q ss_pred             ee--eeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCc
Q psy1859         104 CQ--FHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNK  141 (162)
Q Consensus       104 ~~--~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~  141 (162)
                      ..  +.+|...+.++ |.| +...|++|+.||.|.|||++-.
T Consensus       136 G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n  177 (720)
T KOG0321|consen  136 GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN  177 (720)
T ss_pred             cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence            65  77899999999 999 6678999999999999999743

>KOG1963|consensus

Probab=99.31  E-value=1e-10  Score=85.28  Aligned_cols=135  Identities=16%  Similarity=0.272  Sum_probs=97.7

Q ss_pred             EEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEe
Q psy1859          17 RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWD   96 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd   96 (162)
                      .+|..++.+.+...... ..+.+|.....+   +.......+.      .|...+++.++||.+++++++..||+|.+|.
T Consensus       164 ~~I~~~~~ge~~~i~~~-~~~~~~~v~~~~---~~~~~~~~~~------~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~  233 (792)
T KOG1963|consen  164 KSIVDNNSGEFKGIVHM-CKIHIYFVPKHT---KHTSSRDITV------HHTFNITCVALSPNERYLAAGDSDGRILVWR  233 (792)
T ss_pred             ccEEEcCCceEEEEEEe-eeEEEEEecccc---eeeccchhhh------hhcccceeEEeccccceEEEeccCCcEEEEe
Confidence            56777777776666544 344554333221   1111111111      2555789999999999999999999999996


Q ss_pred             CCC--c--cceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          97 GFN--K--KRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        97 ~~~--~--~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      -..  .  .....+.-|...|.++ |+++|.+|.+|+..+.+.+|.+.+++ .+-+..-.++|..+.++||
T Consensus       234 d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~d  303 (792)
T KOG1963|consen  234 DFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPD  303 (792)
T ss_pred             ccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCC
Confidence            443  1  2344566678899999 99999999999999999999999988 4445666789999999987

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=1e-10  Score=82.79  Aligned_cols=137  Identities=16%  Similarity=0.067  Sum_probs=80.6

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCC-CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEE-EecCC
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIE-GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA-TGGSD   89 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d   89 (162)
                      ....+.+.+|+|+|+.++..+.+ +.-.||.+|..++....+..+.+            .....+|+|+|+.++ +.+.+
T Consensus       194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g------------~~~~~~~SPDG~~la~~~~~~  261 (427)
T PRK02889        194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKG------------SNSAPAWSPDGRTLAVALSRD  261 (427)
T ss_pred             CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCC------------CccceEECCCCCEEEEEEccC
Confidence            34556778999999998887643 33344546655422222221111            356889999997776 56677


Q ss_pred             CeEEEEe--CCCccceeeeeecccceeEE-EcCCCCEEEEec-CCCeEEEE--eCCCceeeeeeccCCCceeEEEecCC
Q psy1859          90 GYVNIWD--GFNKKRLCQFHRYDTGITSL-FHQEYNTFATGG-SDGYVNIW--DGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        90 ~~v~~wd--~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~iw--d~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +...+|.  +..+. ...+..+....... |+|||++++..+ .++...+|  ++.+++.. .+..........+|+||
T Consensus       262 g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpD  338 (427)
T PRK02889        262 GNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPD  338 (427)
T ss_pred             CCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCC
Confidence            7656554  44433 44454444455667 999999887655 34555555  44444432 22222333446788886

>KOG4497|consensus

Probab=99.29  E-value=3.4e-11  Score=79.58  Aligned_cols=129  Identities=16%  Similarity=0.254  Sum_probs=95.5

Q ss_pred             EEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCeEEEEe
Q psy1859          18 CIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWD   96 (162)
Q Consensus        18 ~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v~~wd   96 (162)
                      -.+|+|+|+++++++.. .+.|  -|..+  .+....+.+-.          .|.-+.|..+. ..+.....++.|.+|+
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlvi--Rd~~t--lq~~qlf~cld----------ki~yieW~ads~~ilC~~yk~~~vqvws   77 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVI--RDSET--LQLHQLFLCLD----------KIVYIEWKADSCHILCVAYKDPKVQVWS   77 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEE--eccch--hhHHHHHHHHH----------HhhheeeeccceeeeeeeeccceEEEEE
Confidence            35799999999998776 4444  44444  33333333332          48889999887 4566677899999999


Q ss_pred             CCCccceeeeeecccceeEE-EcCCCCE-EEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          97 GFNKKRLCQFHRYDTGITSL-FHQEYNT-FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        97 ~~~~~~~~~~~~~~~~v~~~-~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +...+....+.....++..+ |||||+. |.+...+-.|.+|.+.+.+... ++-.+..+..++|+||
T Consensus        78 l~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~d  144 (447)
T KOG4497|consen   78 LVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPD  144 (447)
T ss_pred             eecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCC
Confidence            99988888888888888899 9999964 5666688999999998877654 2333445678888886

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.29  E-value=5.1e-10  Score=76.73  Aligned_cols=140  Identities=8%  Similarity=0.029  Sum_probs=86.9

Q ss_pred             cEEEEEEeeCCCeEEEEcC-CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec-CCCeE
Q psy1859          15 QTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-SDGYV   92 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~v   92 (162)
                      ....++|+|++++++++.. ++.+.+|+++..++..+....+...+..   ..+......+.++|++++++++. .++.|
T Consensus       176 ~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~i~~~pdg~~lyv~~~~~~~I  252 (330)
T PRK11028        176 GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD---FSDTRWAADIHITPDGRHLYACDRTASLI  252 (330)
T ss_pred             CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc---CCCCccceeEEECCCCCEEEEecCCCCeE
Confidence            3467899999999888765 8999998887533222223222221110   00111234689999998888775 47899


Q ss_pred             EEEeCCCccc----eeeeeecccceeEE-EcCCCCEEEEecC-CCeEEEEeCC--Cce--eeeeeccCCCceeEEEe
Q psy1859          93 NIWDGFNKKR----LCQFHRYDTGITSL-FHQEYNTFATGGS-DGYVNIWDGF--NKK--RLCQFHRYDTGITSLCF  159 (162)
Q Consensus        93 ~~wd~~~~~~----~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~i~iwd~~--~~~--~~~~~~~~~~~v~~v~~  159 (162)
                      .+|++.....    +..... ......+ ++|+|++|+++.. ++.|.+|++.  ++.  .+..+.. .....+++|
T Consensus       253 ~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~-g~~P~~~~~  327 (330)
T PRK11028        253 SVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAV-GQGPMWVSV  327 (330)
T ss_pred             EEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcccccc-CCCceEEEE
Confidence            9999865322    222221 2345577 9999999998875 8899999874  333  2333332 334455554

>KOG1587|consensus

Probab=99.29  E-value=2.8e-11  Score=86.72  Aligned_cols=119  Identities=15%  Similarity=0.131  Sum_probs=90.5

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGS   88 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~   88 (162)
                      ..+.+.+.++.++|-+..+++.+.|-+++||.-+..   ..+++.+..+..         .|++++|||.. ..|+++..
T Consensus       395 ~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~---~~Pl~~~~~~~~---------~v~~vaWSptrpavF~~~d~  462 (555)
T KOG1587|consen  395 ITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI---ASPLLSLDSSPD---------YVTDVAWSPTRPAVFATVDG  462 (555)
T ss_pred             cccCcceEeeecCCCccceeeeeccceeEeccccCC---CCcchhhhhccc---------eeeeeEEcCcCceEEEEEcC
Confidence            335577889999997766665556999999765532   345555554443         69999999987 68888999


Q ss_pred             CCeEEEEeCCCc--cceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCC
Q psy1859          89 DGYVNIWDGFNK--KRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFN  140 (162)
Q Consensus        89 d~~v~~wd~~~~--~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~  140 (162)
                      ||.+.+||+...  .++..........+.+ |+++|+.++.|+..|.+.+|++..
T Consensus       463 ~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  463 DGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             CCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            999999999864  4555555454555566 999999999999999999999953

>KOG1272|consensus

Probab=99.28  E-value=1.4e-11  Score=84.41  Aligned_cols=132  Identities=22%  Similarity=0.286  Sum_probs=92.3

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      +.+..++-+|-+..+-+|...|+|.+  |.+..  ..+...+.+|+.         +|.++++.++|++++|.+.|..++
T Consensus       252 G~~~vm~qNP~NaVih~GhsnGtVSl--WSP~s--kePLvKiLcH~g---------~V~siAv~~~G~YMaTtG~Dr~~k  318 (545)
T KOG1272|consen  252 GRTDVMKQNPYNAVIHLGHSNGTVSL--WSPNS--KEPLVKILCHRG---------PVSSIAVDRGGRYMATTGLDRKVK  318 (545)
T ss_pred             CccchhhcCCccceEEEcCCCceEEe--cCCCC--cchHHHHHhcCC---------CcceEEECCCCcEEeeccccccee
Confidence            55666778888888899999999999  66655  556666677766         899999999999999999999999


Q ss_pred             EEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEe-CCCce--eeeeec--cCCCceeEEEecC
Q psy1859          94 IWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWD-GFNKK--RLCQFH--RYDTGITSLCFSY  161 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd-~~~~~--~~~~~~--~~~~~v~~v~~~p  161 (162)
                      |||++.-..+.++.. ..+...+ +|..|  +++.+....+.||. .-.+.  .-..+-  ...+.|.++.|+|
T Consensus       319 IWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP  389 (545)
T KOG1272|consen  319 IWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCP  389 (545)
T ss_pred             Eeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceecc
Confidence            999998765555543 3455566 77555  34444555788994 22211  111111  1233677777776

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=3.9e-10  Score=80.01  Aligned_cols=137  Identities=10%  Similarity=0.008  Sum_probs=84.2

Q ss_pred             cccccEEEEEEeeCCCeEEE-EcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec-C
Q psy1859          11 SLKFQTRCIKCFPNKQGYVL-SSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-S   88 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~-~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~   88 (162)
                      ..++...+.+|+|+|+.++. .+.+|.-.||.++..++...   .+..+..         .....+|+|+++.|+..+ .
T Consensus       245 ~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~---~lt~~~~---------~~~~~~~spDG~~l~f~sd~  312 (433)
T PRK04922        245 SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT---RLTNHFG---------IDTEPTWAPDGKSIYFTSDR  312 (433)
T ss_pred             cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE---ECccCCC---------CccceEECCCCCEEEEEECC
Confidence            34455567899999987764 45666545555666542221   2222211         346789999998877665 3


Q ss_pred             CC--eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCC---eEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          89 DG--YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDG---YVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        89 d~--~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ++  .|+++|+.+++. ..+.......... |+|+|++++..+.++   .|.+||+.+++.. .+. +......+.|+||
T Consensus       313 ~g~~~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spd  389 (433)
T PRK04922        313 GGRPQIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPN  389 (433)
T ss_pred             CCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCC
Confidence            44  466777766543 3332233344457 999999988765432   6999999877654 333 2224456788886

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=2.2e-10  Score=81.25  Aligned_cols=136  Identities=15%  Similarity=0.049  Sum_probs=83.5

Q ss_pred             cccEEEEEEeeCCCeEEEEcCC-CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEE-EecCCC
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIE-GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA-TGGSDG   90 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~   90 (162)
                      ...+...+|+|+++.++.++.+ +.-.||.++...+....+..+.+            .....+|+|+|+.++ +.+.++
T Consensus       203 ~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g------------~~~~~~~SpDG~~l~~~~s~~g  270 (433)
T PRK04922        203 AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRG------------INGAPSFSPDGRRLALTLSRDG  270 (433)
T ss_pred             CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCC------------CccCceECCCCCEEEEEEeCCC
Confidence            3456678899999998887644 33233335544322322222111            245789999997665 445544


Q ss_pred             --eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEec-CCC--eEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          91 --YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGG-SDG--YVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        91 --~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                        .|++||+.+++. ..+..+....... |+|||++++..+ .++  .|.++|+.+++.. .+..+......++|+||
T Consensus       271 ~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpD  346 (433)
T PRK04922        271 NPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPD  346 (433)
T ss_pred             CceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCC
Confidence              699999987754 3444444445567 999999887765 344  4777787666533 23223334556888886

>KOG3914|consensus

Probab=99.28  E-value=7.9e-11  Score=79.20  Aligned_cols=83  Identities=11%  Similarity=0.136  Sum_probs=68.5

Q ss_pred             ccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeee-ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCce
Q psy1859          65 IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH-RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKK  142 (162)
Q Consensus        65 ~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~-~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~  142 (162)
                      .+|...++.++|+||++.++++..|..|++-.......+..+- +|...|..+ .- ++..|++++.|++|++||+++|+
T Consensus       148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~-~~~~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT-DNYLLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec-cCceeeecCCCCcEEEEecccCC
Confidence            4688899999999999999999999999998776655555443 688888887 54 34569999999999999999999


Q ss_pred             eeeeec
Q psy1859         143 RLCQFH  148 (162)
Q Consensus       143 ~~~~~~  148 (162)
                      .+.++.
T Consensus       227 ~L~t~d  232 (390)
T KOG3914|consen  227 LLDTCD  232 (390)
T ss_pred             cccccc
Confidence            876653

>KOG4227|consensus

Probab=99.28  E-value=1.3e-10  Score=78.63  Aligned_cols=129  Identities=12%  Similarity=0.028  Sum_probs=99.7

Q ss_pred             cccceeeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCC
Q psy1859           2 GYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN   81 (162)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~   81 (162)
                      |+|.+....++...|.|++|....+++.+|..+++|.+.+++.+.    .+..+. +..      ..+.|..+..+|-.+
T Consensus        94 ~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~q----si~V~~-~~~------~~~~VY~m~~~P~DN  162 (609)
T KOG4227|consen   94 PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQ----SIYVAN-ENN------NRGDVYHMDQHPTDN  162 (609)
T ss_pred             CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccce----eeeeec-ccC------cccceeecccCCCCc
Confidence            567777888888899999999999999999999999996655432    233222 222      223799999999999


Q ss_pred             EEEEecCCCeEEEEeCCCcc-ce--eeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCc
Q psy1859          82 TFATGGSDGYVNIWDGFNKK-RL--CQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNK  141 (162)
Q Consensus        82 ~l~~~~~d~~v~~wd~~~~~-~~--~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~  141 (162)
                      .|++.+.++.|.+||.+... .+  ..........+.+ |+| ...++++.+..+-+.+||.+..
T Consensus       163 ~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  163 TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ  227 (609)
T ss_pred             eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence            99999999999999998754 22  2233455667778 999 5668888888999999999854

>KOG1240|consensus

Probab=99.28  E-value=5.6e-10  Score=84.50  Aligned_cols=138  Identities=14%  Similarity=0.100  Sum_probs=93.4

Q ss_pred             EEEEEeeC-CCeEEEEcCCCcEEEEEecCCccc-ceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEE
Q psy1859          17 RCIKCFPN-KQGYVLSSIEGRAAVEYLDTGPEM-QKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI   94 (162)
Q Consensus        17 ~~i~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~   94 (162)
                      ..++.++. +.+|++|+.||+|++|+...-.+. ....-.+..+..       ..++..+.+.+.+..+|.++.||.|.+
T Consensus      1052 ~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~-------~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1052 IKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPE-------GSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred             cceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEecc-------CCceEEEEeccCCCeEEEEcCCCeEEE
Confidence            34666654 599999999999999776433211 111111222211       126888888898999999999999999


Q ss_pred             EeCCCc--c-----c-----------ee-------------------------------------eeeecccceeEE-Ec
Q psy1859          95 WDGFNK--K-----R-----------LC-------------------------------------QFHRYDTGITSL-FH  118 (162)
Q Consensus        95 wd~~~~--~-----~-----------~~-------------------------------------~~~~~~~~v~~~-~~  118 (162)
                      .++...  +     .           +.                                     ......+.++++ .+
T Consensus      1125 ~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVID 1204 (1431)
T ss_pred             EEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEec
Confidence            877641  0     0           00                                     001123567888 99


Q ss_pred             CCCCEEEEecCCCeEEEEeCCCceeeeeec-cCCCceeEEEecC
Q psy1859         119 QEYNTFATGGSDGYVNIWDGFNKKRLCQFH-RYDTGITSLCFSY  161 (162)
Q Consensus       119 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~p  161 (162)
                      |.+.+++.|+..|.+.+||+|-+.++..+. ++..++..+..+|
T Consensus      1205 p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1205 PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred             CCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeec
Confidence            999999999999999999999888777664 3345666665554

>KOG1310|consensus

Probab=99.27  E-value=1.5e-11  Score=85.97  Aligned_cols=97  Identities=18%  Similarity=0.255  Sum_probs=76.7

Q ss_pred             ccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeee-ecccceeEE-EcC--CCCEEEEecCCCeEEEEeCCC
Q psy1859          65 IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH-RYDTGITSL-FHQ--EYNTFATGGSDGYVNIWDGFN  140 (162)
Q Consensus        65 ~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~-~~~~~v~~~-~~~--~~~~l~~~~~d~~i~iwd~~~  140 (162)
                      .+|.+-|.+++|+.+|.+|++|+.|-.+.|||....+++..+. +|...|.++ |-|  +.+.+++|..|..|+++|+..
T Consensus        47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~  126 (758)
T KOG1310|consen   47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS  126 (758)
T ss_pred             ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence            4566799999999999999999999999999999888777665 788899999 998  567899999999999999974


Q ss_pred             ce----------eeeeeccCCCceeEEEecC
Q psy1859         141 KK----------RLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus       141 ~~----------~~~~~~~~~~~v~~v~~~p  161 (162)
                      .+          ...-+..|...|..++-.|
T Consensus       127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p  157 (758)
T KOG1310|consen  127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAP  157 (758)
T ss_pred             ccccccccCccchhhhhhhhhhhhhheecCC
Confidence            21          2223345555555555444

>KOG1538|consensus

Probab=99.26  E-value=4.7e-11  Score=85.52  Aligned_cols=89  Identities=16%  Similarity=0.312  Sum_probs=76.7

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      .|..++|-|+|..++.+. +..+.+||...|..++.+++|...|.++ |+.||+.+++|+.|..+.+|..+-. -+..+ 
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G~LkY-   90 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-GILKY-   90 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-ceeee-
Confidence            589999999997666553 5578999999999999999999999999 9999999999999999999997532 23333 


Q ss_pred             cCCCceeEEEecC
Q psy1859         149 RYDTGITSLCFSY  161 (162)
Q Consensus       149 ~~~~~v~~v~~~p  161 (162)
                      .|.+.|.|+.|+|
T Consensus        91 SH~D~IQCMsFNP  103 (1081)
T KOG1538|consen   91 SHNDAIQCMSFNP  103 (1081)
T ss_pred             ccCCeeeEeecCc
Confidence            5899999999988

>KOG0771|consensus

Probab=99.26  E-value=2e-11  Score=82.31  Aligned_cols=76  Identities=20%  Similarity=0.374  Sum_probs=67.9

Q ss_pred             EEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859          72 NAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        72 ~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      ..++|+++|..+++++.||.+|+|+..+...+.....|...|.++ |+|||++|++-+.| ..+||+++++..++...
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            579999999999999999999999987777777777899999999 99999999999999 99999999986655543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=4.9e-10  Score=79.58  Aligned_cols=138  Identities=6%  Similarity=-0.056  Sum_probs=88.1

Q ss_pred             ccccccEEEEEEeeCCCeEE-EEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYV-LSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~-~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      ...++.+...+|+|+|+.++ +.+.++...||.++...+...   .+..+.         .......|+|+|+.++..+.
T Consensus       242 ~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~---~Lt~~~---------~~~~~~~~spDG~~i~f~s~  309 (435)
T PRK05137        242 GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT---RLTDSP---------AIDTSPSYSPDGSQIVFESD  309 (435)
T ss_pred             ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE---EccCCC---------CccCceeEcCCCCEEEEEEC
Confidence            34555667788999998876 456677767776776552222   222222         13567899999988776653


Q ss_pred             -C--CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCC---CeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          89 -D--GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSD---GYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        89 -d--~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                       +  ..|+++|+..++. +.+.......... |+|+|++++....+   ..|.+||+.++. ...+. ....+..+.|+|
T Consensus       310 ~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~sp  386 (435)
T PRK05137        310 RSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAP  386 (435)
T ss_pred             CCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECC
Confidence             3  3688888776543 3343334455667 99999998876543   368889986544 33333 223466788888


Q ss_pred             C
Q psy1859         162 D  162 (162)
Q Consensus       162 d  162 (162)
                      |
T Consensus       387 D  387 (435)
T PRK05137        387 N  387 (435)
T ss_pred             C
Confidence            6

>KOG3881|consensus

Probab=99.25  E-value=3.3e-10  Score=76.15  Aligned_cols=143  Identities=17%  Similarity=0.118  Sum_probs=106.7

Q ss_pred             EEEEEEeeCCCe-EEEEcCC--CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC--CCEEEEecCCC
Q psy1859          16 TRCIKCFPNKQG-YVLSSIE--GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE--YNTFATGGSDG   90 (162)
Q Consensus        16 ~~~i~~~~~~~~-l~~~~~~--g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~d~   90 (162)
                      +..+.-++...+ +++|+..  ..+.||+.+.    .+.+++.+..+....+...+-=++++.|-|.  ...|++++.-+
T Consensus       151 ~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~----~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~h  226 (412)
T KOG3881|consen  151 LYDVRQTDTDPYIVATGGKENINELKIWDLEQ----SKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYH  226 (412)
T ss_pred             eeeeccCCCCCceEecCchhcccceeeeeccc----ceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecce
Confidence            334444554444 5557777  7788865543    3555555544433333333334678899887  78999999999


Q ss_pred             eEEEEeCCCc-cceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeee-eccCCCceeEEEecCC
Q psy1859          91 YVNIWDGFNK-KRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQ-FHRYDTGITSLCFSYD  162 (162)
Q Consensus        91 ~v~~wd~~~~-~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~v~~~pd  162 (162)
                      ++++||.+.+ +++..+.-...+++++ ..|.+.++++|...+.+..+|++.++.... +.+..+.|++|..+|.
T Consensus       227 qvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~  301 (412)
T KOG3881|consen  227 QVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPT  301 (412)
T ss_pred             eEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCC
Confidence            9999999975 5777887778899999 999999999999999999999999987555 7788888888887763

>KOG1587|consensus

Probab=99.25  E-value=4.2e-10  Score=80.84  Aligned_cols=157  Identities=15%  Similarity=0.059  Sum_probs=106.7

Q ss_pred             cceeeeccccccEEEEEEeeCC--CeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-
Q psy1859           4 IMQRRESSLKFQTRCIKCFPNK--QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-   80 (162)
Q Consensus         4 ~~~~~~~~~~~~~~~i~~~~~~--~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-   80 (162)
                      +......++...+..+.|..+.  ..|++++.||.|..|+.+.-.. ......+...........-...+++++|.+.. 
T Consensus       282 ~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~-P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p  360 (555)
T KOG1587|consen  282 GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSL-PVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP  360 (555)
T ss_pred             ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeecccccc-chhhcccccccccccccccccceeeEeeccCCC
Confidence            3455667788888889998754  4489999999999986654321 01111111111000111123368999999976 


Q ss_pred             CEEEEecCCCeEEEEeCCCcc--------ceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCC-CceeeeeeccC
Q psy1859          81 NTFATGGSDGYVNIWDGFNKK--------RLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGF-NKKRLCQFHRY  150 (162)
Q Consensus        81 ~~l~~~~~d~~v~~wd~~~~~--------~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~  150 (162)
                      ..|+.|+.+|.|.--+....+        .+..+..|.++++.+ ++|=+..++..+.|-+++||... ...++..+..+
T Consensus       361 ~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~  440 (555)
T KOG1587|consen  361 NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS  440 (555)
T ss_pred             ceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc
Confidence            789999999999874433321        133455788999999 99966666555569999999987 55667677778


Q ss_pred             CCceeEEEecC
Q psy1859         151 DTGITSLCFSY  161 (162)
Q Consensus       151 ~~~v~~v~~~p  161 (162)
                      ...|++++|||
T Consensus       441 ~~~v~~vaWSp  451 (555)
T KOG1587|consen  441 PDYVTDVAWSP  451 (555)
T ss_pred             cceeeeeEEcC
Confidence            88899999998

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=9.2e-10  Score=78.10  Aligned_cols=136  Identities=10%  Similarity=-0.012  Sum_probs=82.6

Q ss_pred             cccEEEEEEeeCCCeEEEEcCC-CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEE-EecCCC
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIE-GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA-TGGSDG   90 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~   90 (162)
                      ...+...+|+|+|+.|+..+.+ +.-.||.++..++..+.+....+            .+...+|+|+|+.++ +.+.++
T Consensus       198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g------------~~~~~~~SpDG~~la~~~~~~g  265 (430)
T PRK00178        198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEG------------LNGAPAWSPDGSKLAFVLSKDG  265 (430)
T ss_pred             CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCC------------CcCCeEECCCCCEEEEEEccCC
Confidence            3456778899999998876544 33345556655422333222111            245689999997776 444444


Q ss_pred             --eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecC-C--CeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          91 --YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS-D--GYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        91 --~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                        .|+++|+.+++. ..+..+....... |+|||+.++..+. +  ..|.++|+.+++... +...........|+||
T Consensus       266 ~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spd  341 (430)
T PRK00178        266 NPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSAD  341 (430)
T ss_pred             CceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCC
Confidence              688889987654 3344444445566 9999997766553 3  367888887776432 2212223345677775

>KOG2139|consensus

Probab=99.23  E-value=2.5e-10  Score=76.29  Aligned_cols=133  Identities=14%  Similarity=0.244  Sum_probs=91.1

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCeEE
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVN   93 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v~   93 (162)
                      -.+-++|++--.-+++++.|-.|++  ++.+.   +..-.++.....        .|++++|-|.+ ..|+.++ .+-|.
T Consensus       100 dlr~~aWhqH~~~fava~nddvVri--y~kss---t~pt~Lks~sQr--------nvtclawRPlsaselavgC-r~gIc  165 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRI--YDKSS---TCPTKLKSVSQR--------NVTCLAWRPLSASELAVGC-RAGIC  165 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEE--eccCC---CCCceecchhhc--------ceeEEEeccCCcceeeeee-cceeE
Confidence            3456889986666888999999999  55443   111222222222        49999999987 5565555 45588


Q ss_pred             EEeCCCc----cce----------eeeeecccceeEE-EcCCCCEEEEec-CCCeEEEEeCCCceeeeeeccCCCceeEE
Q psy1859          94 IWDGFNK----KRL----------CQFHRYDTGITSL-FHQEYNTFATGG-SDGYVNIWDGFNKKRLCQFHRYDTGITSL  157 (162)
Q Consensus        94 ~wd~~~~----~~~----------~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~v  157 (162)
                      +|.....    ..+          ...++ ..+|+.+ |.+||..+++++ .|..|+|||..++..+.-...-.+.+.-+
T Consensus       166 iW~~s~tln~~r~~~~~s~~~~qvl~~pg-h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slL  244 (445)
T KOG2139|consen  166 IWSDSRTLNANRNIRMMSTHHLQVLQDPG-HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLL  244 (445)
T ss_pred             EEEcCcccccccccccccccchhheeCCC-CceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeE
Confidence            9976531    111          11122 3678999 999999999998 56789999999887655443345578889


Q ss_pred             EecCC
Q psy1859         158 CFSYD  162 (162)
Q Consensus       158 ~~~pd  162 (162)
                      .||||
T Consensus       245 kwSPd  249 (445)
T KOG2139|consen  245 KWSPD  249 (445)
T ss_pred             EEcCC
Confidence            99997

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=1.2e-09  Score=77.38  Aligned_cols=145  Identities=10%  Similarity=-0.020  Sum_probs=83.9

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcC-CC--cEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEE
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSI-EG--RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFAT   85 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~-~g--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~   85 (162)
                      ...+++.....+|+|||+.|+..+. +|  .+.+..++...+.......+.....        ......+|+|+|+.|+.
T Consensus       226 lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~--------~~~~~p~wSPDG~~Laf  297 (428)
T PRK01029        226 ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF--------GTQGNPSFSPDGTRLVF  297 (428)
T ss_pred             eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC--------CCcCCeEECCCCCEEEE
Confidence            3445566667889999998887653 33  3444324433210011111111110        12456799999987775


Q ss_pred             ec-CCCeEEEE--eCCC-ccceeeeeecccceeEE-EcCCCCEEEEecCC---CeEEEEeCCCceeeeeeccCCCceeEE
Q psy1859          86 GG-SDGYVNIW--DGFN-KKRLCQFHRYDTGITSL-FHQEYNTFATGGSD---GYVNIWDGFNKKRLCQFHRYDTGITSL  157 (162)
Q Consensus        86 ~~-~d~~v~~w--d~~~-~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~v  157 (162)
                      .+ .++...+|  ++.. +.....+......+... |+|||++++....+   ..|.+||+.+++... +......+.+.
T Consensus       298 ~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p  376 (428)
T PRK01029        298 VSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESP  376 (428)
T ss_pred             EECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccce
Confidence            54 45644444  5432 23334444444556677 99999988876543   479999998886543 33333456778


Q ss_pred             EecCC
Q psy1859         158 CFSYD  162 (162)
Q Consensus       158 ~~~pd  162 (162)
                      .|+||
T Consensus       377 ~wSpD  381 (428)
T PRK01029        377 SWAID  381 (428)
T ss_pred             EECCC
Confidence            89886

>KOG1524|consensus

Probab=99.21  E-value=4.7e-10  Score=78.58  Aligned_cols=124  Identities=22%  Similarity=0.273  Sum_probs=87.6

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .....++|++|.|+.+.++.+.. +.+.|-.+.++.    .+..-+.         |.+-|.+++|++...++++|+.|-
T Consensus       143 Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~----k~i~WkA---------HDGiiL~~~W~~~s~lI~sgGED~  208 (737)
T KOG1524|consen  143 QNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANS----KIIRWRA---------HDGLVLSLSWSTQSNIIASGGEDF  208 (737)
T ss_pred             hcCceeEEEEECCCCCceEEecC-CeEEEeeccccc----ceeEEec---------cCcEEEEeecCccccceeecCCce
Confidence            34567899999999887776533 445553333322    2233334         455799999999999999999999


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ..++||.. |..+..-..|..+++++ |.|+ +.++.++. +++++           -....+.|..++||||
T Consensus       209 kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~-----------~~p~~GSifnlsWS~D  267 (737)
T KOG1524|consen  209 RFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF-----------SSPRVGSIFNLSWSAD  267 (737)
T ss_pred             eEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-eeeee-----------cCCCccceEEEEEcCC
Confidence            99999976 66777777899999999 9999 55555543 23441           1234567888888876

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=1.2e-09  Score=77.73  Aligned_cols=135  Identities=13%  Similarity=-0.002  Sum_probs=82.9

Q ss_pred             ccEEEEEEeeCCCeEEEEcC-CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEE-ecCCC-
Q psy1859          14 FQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFAT-GGSDG-   90 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~-~~~d~-   90 (162)
                      ..+....|+|||+.++..+. ++...||.++..++..+.+..+.+            .....+|+|+|+.|+. .+.++ 
T Consensus       218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g------------~~~~~~wSPDG~~La~~~~~~g~  285 (448)
T PRK04792        218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG------------INGAPRFSPDGKKLALVLSKDGQ  285 (448)
T ss_pred             CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC------------CcCCeeECCCCCEEEEEEeCCCC
Confidence            34557889999998887654 455566667765432322222211            2346899999987664 45555 


Q ss_pred             -eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecC-C--CeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          91 -YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS-D--GYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        91 -~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                       .|+++|+.+++. ..+..+....... |+|||++++..+. +  ..|.++|+.+++... +..........+|+||
T Consensus       286 ~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpD  360 (448)
T PRK04792        286 PEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPD  360 (448)
T ss_pred             eEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCC
Confidence             477888877653 3344444455667 9999998766553 3  357777887766432 2222223345678876

>KOG2041|consensus

Probab=99.19  E-value=5e-10  Score=81.06  Aligned_cols=152  Identities=11%  Similarity=0.082  Sum_probs=107.4

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeee--eeeeeeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKY--AFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      -+......|++|+.+..++++|+.||.+++..++..+...+..-  ....-..+...-+|.+.|..+.|+...+.|-++.
T Consensus        11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD   90 (1189)
T KOG2041|consen   11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD   90 (1189)
T ss_pred             CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence            34455668999999999999999999999977665432221111  1111112223345777999999999999999999


Q ss_pred             CCCeEEEEeCCCccceeeeee--cccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          88 SDGYVNIWDGFNKKRLCQFHR--YDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~~~~--~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .+|.|.+|-+.+++.+..+-+  ..+.|.++ |+.||..++....||.|.+=.+.. ..+.--.........+.|+||
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG-NRIwgKeLkg~~l~hv~ws~D  167 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG-NRIWGKELKGQLLAHVLWSED  167 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc-ceecchhcchheccceeeccc
Confidence            999999999999987765543  35667788 999999999999999998877753 333222222223446677765

>KOG0974|consensus

Probab=99.18  E-value=8.9e-10  Score=81.87  Aligned_cols=125  Identities=15%  Similarity=0.105  Sum_probs=95.5

Q ss_pred             EeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCc
Q psy1859          21 CFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNK  100 (162)
Q Consensus        21 ~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~  100 (162)
                      .+++.=++++|+.-+.+.+|.+...+   ... .+.+|.         +.+.++.|+.+|.++++.+.|..+++|++.+.
T Consensus       141 ~s~~~~~i~~gsv~~~iivW~~~~dn---~p~-~l~GHe---------G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~  207 (967)
T KOG0974|consen  141 DSAEELYIASGSVFGEIIVWKPHEDN---KPI-RLKGHE---------GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSR  207 (967)
T ss_pred             ccCcEEEEEeccccccEEEEeccccC---Ccc-eecccC---------CceEEEEEccCCcEEEEEecCcceeeeecccc
Confidence            34555578888889999998877322   222 345554         48999999999999999999999999999998


Q ss_pred             ccee-eeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCC-ceeEEEecC
Q psy1859         101 KRLC-QFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT-GITSLCFSY  161 (162)
Q Consensus       101 ~~~~-~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~v~~~p  161 (162)
                      +... ..-+|...+..+ |.|+  ++++++.|-+.++|+.. ++.+.++..|.. .++.++..+
T Consensus       208 ~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~  268 (967)
T KOG0974|consen  208 EVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPI  268 (967)
T ss_pred             cccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcC
Confidence            7655 555788889999 9988  89999999999999774 444556666653 455555543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.18  E-value=4.5e-09  Score=72.93  Aligned_cols=109  Identities=15%  Similarity=0.149  Sum_probs=75.7

Q ss_pred             CeE-EEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCcccee
Q psy1859          26 QGY-VLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC  104 (162)
Q Consensus        26 ~~l-~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~  104 (162)
                      +++ ++-..++.+.+  +|..+  .+.+..+.....         .-..+.++|+++++.+++.||.|.++|+.+.+.+.
T Consensus         6 ~l~~V~~~~~~~v~v--iD~~t--~~~~~~i~~~~~---------~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~   72 (369)
T PF02239_consen    6 NLFYVVERGSGSVAV--IDGAT--NKVVARIPTGGA---------PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA   72 (369)
T ss_dssp             GEEEEEEGGGTEEEE--EETTT---SEEEEEE-STT---------EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE
T ss_pred             cEEEEEecCCCEEEE--EECCC--CeEEEEEcCCCC---------ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEE
Confidence            344 34567788998  66655  444444443221         23457799999999888999999999999999988


Q ss_pred             eeeecccceeEE-EcCCCCEEEEec-CCCeEEEEeCCCceeeeeec
Q psy1859         105 QFHRYDTGITSL-FHQEYNTFATGG-SDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus       105 ~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~  148 (162)
                      +++.. .....+ +++||+++++++ ..+.+.++|.++.+.+..+.
T Consensus        73 ~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~  117 (369)
T PF02239_consen   73 TIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP  117 (369)
T ss_dssp             EEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred             EEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence            88753 446678 999999998886 68999999999998887764

...

>KOG1517|consensus

Probab=99.17  E-value=1.1e-09  Score=82.02  Aligned_cols=136  Identities=15%  Similarity=0.199  Sum_probs=93.3

Q ss_pred             EEEEEEe-eCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCeEE
Q psy1859          16 TRCIKCF-PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVN   93 (162)
Q Consensus        16 ~~~i~~~-~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v~   93 (162)
                      +++++.+ +.|+.+++|-.||.+++||....... ..+...+.|...+       +|..+.+.+.| ..|++|+.+|.|+
T Consensus      1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~-------~Iv~~slq~~G~~elvSgs~~G~I~ 1282 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVE-------PIVHLSLQRQGLGELVSGSQDGDIQ 1282 (1387)
T ss_pred             ceeecccccCCceEEEeecCCceEEeecccCCcc-ccceeecccCCcc-------cceeEEeecCCCcceeeeccCCeEE
Confidence            3444433 34789999999999999665543311 1233334444321       49999999987 5699999999999


Q ss_pred             EEeCCCcccee--eeeec---ccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeecc-------CCCceeEEEec
Q psy1859          94 IWDGFNKKRLC--QFHRY---DTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR-------YDTGITSLCFS  160 (162)
Q Consensus        94 ~wd~~~~~~~~--~~~~~---~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~v~~v~~~  160 (162)
                      +||++......  .+..+   ++..+++ .|++...+++|+. +.|+||++. |+.+..+..       ..+.+.|++|+
T Consensus      1283 ~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FH 1360 (1387)
T KOG1517|consen 1283 LLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFH 1360 (1387)
T ss_pred             EEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeec
Confidence            99999842222  22222   3458888 9999999999988 999999995 443333322       23467889998


Q ss_pred             C
Q psy1859         161 Y  161 (162)
Q Consensus       161 p  161 (162)
                      |
T Consensus      1361 P 1361 (1387)
T KOG1517|consen 1361 P 1361 (1387)
T ss_pred             c
Confidence            7

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.15  E-value=3.6e-09  Score=74.77  Aligned_cols=136  Identities=10%  Similarity=-0.017  Sum_probs=84.1

Q ss_pred             ccccEEEEEEeeCCCeEEE-EcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC-C
Q psy1859          12 LKFQTRCIKCFPNKQGYVL-SSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-D   89 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~-~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d   89 (162)
                      ..+...+++|+|+++.|+. .+.++...||.++..++....+   ..+..         ......|+|+++.|+..+. +
T Consensus       232 ~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l---~~~~~---------~~~~~~~s~dg~~l~~~s~~~  299 (417)
T TIGR02800       232 FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL---TNGPG---------IDTEPSWSPDGKSIAFTSDRG  299 (417)
T ss_pred             CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC---CCCCC---------CCCCEEECCCCCEEEEEECCC
Confidence            4455667889999987765 4555655555566554222211   11211         2446789999987765543 3


Q ss_pred             C--eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCC---eEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          90 G--YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDG---YVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        90 ~--~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +  .|+++|+.+++. ..+.......... |+|+|++++.++.++   .|.+||+.++... .+... .......|+||
T Consensus       300 g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spd  375 (417)
T TIGR02800       300 GSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPN  375 (417)
T ss_pred             CCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCC
Confidence            3  688888876543 3343344556667 999999999888765   7899999876432 22222 22344567765

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.15  E-value=3.5e-09  Score=74.80  Aligned_cols=135  Identities=14%  Similarity=0.031  Sum_probs=83.1

Q ss_pred             ccEEEEEEeeCCCeEEEEcCC-CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEE-EecCC--
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIE-GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA-TGGSD--   89 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d--   89 (162)
                      ..+...+|+|++++++.++.+ +.-.||.++..++.......   ..         ..+.+++|+|+++.|+ +.+.+  
T Consensus       190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~---~~---------~~~~~~~~spDg~~l~~~~~~~~~  257 (417)
T TIGR02800       190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS---FP---------GMNGAPAFSPDGSKLAVSLSKDGN  257 (417)
T ss_pred             CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec---CC---------CCccceEECCCCCEEEEEECCCCC
Confidence            346677899999998887543 22334445554421222211   11         1356789999997665 44444  


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecC-CC--eEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS-DG--YVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ..|++||+.+++. ..+..+....... |+|+|+.++..+. ++  .|.++|+.+++.. .+..+...+..+.|+||
T Consensus       258 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spd  332 (417)
T TIGR02800       258 PDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPD  332 (417)
T ss_pred             ccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCC
Confidence            4688899887643 3333344444566 9999998876553 33  6888888776543 34434556677888876

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=5.3e-09  Score=74.10  Aligned_cols=133  Identities=10%  Similarity=0.009  Sum_probs=85.0

Q ss_pred             EEEEEeeCCCeEEEEc-CCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC---CeE
Q psy1859          17 RCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD---GYV   92 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d---~~v   92 (162)
                      ...+|+|||+.|+..+ .+|...||.++...... ....+....         ..+....|+|+|+.|+..+.+   ..|
T Consensus       284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~-~~~~lt~~~---------~~~~~p~wSPDG~~Laf~~~~~g~~~I  353 (428)
T PRK01029        284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ-SPRLLTKKY---------RNSSCPAWSPDGKKIAFCSVIKGVRQI  353 (428)
T ss_pred             CCeEECCCCCEEEEEECCCCCceEEEEECccccc-ceEEeccCC---------CCccceeECCCCCEEEEEEcCCCCcEE
Confidence            4678999999888765 46767777665432101 111111111         136688999999888765433   478


Q ss_pred             EEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecC---CCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          93 NIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS---DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      .+||+.+++... +......+... |+|||+.|+....   ...|.++|+.+++..... ...+.+...+|+|
T Consensus       354 ~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~  424 (428)
T PRK01029        354 CVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGA  424 (428)
T ss_pred             EEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecC
Confidence            999998876533 33223345667 9999998775432   357889999877654433 3445577788887

>KOG1354|consensus

Probab=99.12  E-value=2.3e-10  Score=76.05  Aligned_cols=140  Identities=14%  Similarity=0.130  Sum_probs=96.6

Q ss_pred             cceeeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CE
Q psy1859           4 IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NT   82 (162)
Q Consensus         4 ~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~   82 (162)
                      |.......+.+|+.+|+++.|+..+++ .+|-.|.+|.++...... .+..++.+..++    .+.-|++..|||.. +.
T Consensus       155 prRv~aNaHtyhiNSIS~NsD~Et~lS-ADdLRINLWnlei~d~sF-nIVDIKP~nmEe----LteVITsaEFhp~~cn~  228 (433)
T KOG1354|consen  155 PRRVYANAHTYHINSISVNSDKETFLS-ADDLRINLWNLEIIDQSF-NIVDIKPANMEE----LTEVITSAEFHPHHCNV  228 (433)
T ss_pred             eeeeccccceeEeeeeeecCccceEee-ccceeeeeccccccCCce-eEEEccccCHHH----HHHHHhhhccCHhHccE
Confidence            445556678899999999999998887 567889998877644211 222233333221    33468899999976 88


Q ss_pred             EEEecCCCeEEEEeCCCccce------eeee----------ecccceeEE-EcCCCCEEEEecCCCeEEEEeC-CCceee
Q psy1859          83 FATGGSDGYVNIWDGFNKKRL------CQFH----------RYDTGITSL-FHQEYNTFATGGSDGYVNIWDG-FNKKRL  144 (162)
Q Consensus        83 l~~~~~d~~v~~wd~~~~~~~------~~~~----------~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~-~~~~~~  144 (162)
                      |+-.+..|.|++.|++...+.      ....          .--..|..+ |+++|+|+++-+. -+|++||+ ...+++
T Consensus       229 f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv  307 (433)
T KOG1354|consen  229 FVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPV  307 (433)
T ss_pred             EEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcc
Confidence            999999999999999954221      1111          112356677 9999999998743 58999999 455666


Q ss_pred             eeeccC
Q psy1859         145 CQFHRY  150 (162)
Q Consensus       145 ~~~~~~  150 (162)
                      .+++.|
T Consensus       308 ~t~~vh  313 (433)
T KOG1354|consen  308 ETYPVH  313 (433)
T ss_pred             eEEeeh
Confidence            666544

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.11  E-value=9.5e-09  Score=73.00  Aligned_cols=137  Identities=8%  Similarity=-0.063  Sum_probs=82.0

Q ss_pred             cccccEEEEEEeeCCCeEEE-EcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec-C
Q psy1859          11 SLKFQTRCIKCFPNKQGYVL-SSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-S   88 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~-~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~   88 (162)
                      ..++.....+|+|+|+.++. .+.+|...||.+|..++....   +..+..         ......|+|+++.++..+ .
T Consensus       240 ~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~---lt~~~~---------~~~~~~~spDg~~i~f~s~~  307 (430)
T PRK00178        240 NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR---VTNHPA---------IDTEPFWGKDGRTLYFTSDR  307 (430)
T ss_pred             CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE---cccCCC---------CcCCeEECCCCCEEEEEECC
Confidence            34455567899999998874 455666566667765522222   221211         355678999998766554 3


Q ss_pred             C--CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCC-C--eEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          89 D--GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSD-G--YVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        89 d--~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +  ..|+++|+.+++.. .+.......... |+|+|++++....+ +  .|.++|+.+++.. .+.. ........|+||
T Consensus       308 ~g~~~iy~~d~~~g~~~-~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spd  384 (430)
T PRK00178        308 GGKPQIYKVNVNGGRAE-RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPN  384 (430)
T ss_pred             CCCceEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCC
Confidence            3  36777788776533 222222233345 99999998877643 3  5888999877543 2321 222235578776

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.11  E-value=3.7e-10  Score=52.64  Aligned_cols=38  Identities=32%  Similarity=0.608  Sum_probs=35.5

Q ss_pred             ccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEe
Q psy1859         100 KKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWD  137 (162)
Q Consensus       100 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd  137 (162)
                      ++++..+.+|...|.++ |+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            45778899999999999 999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4532|consensus

Probab=99.09  E-value=1.9e-08  Score=65.17  Aligned_cols=122  Identities=12%  Similarity=-0.030  Sum_probs=90.4

Q ss_pred             EEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEE
Q psy1859          16 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW   95 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~w   95 (162)
                      +..++++++++++++.++...|.+|.+|...  ............        +.-.+..|+.....+|++..||.+.||
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s--ey~~~~~~a~t~--------D~gF~~S~s~~~~~FAv~~Qdg~~~I~  230 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDES--EYIENIYEAPTS--------DHGFYNSFSENDLQFAVVFQDGTCAIY  230 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCcc--ceeeeeEecccC--------CCceeeeeccCcceEEEEecCCcEEEE
Confidence            5678899999999999999999998777654  222221111111        145688899999999999999999999


Q ss_pred             eCCCc-cceee----eeecccceeEE-EcCCCC--EEEEecCCCeEEEEeCCCceeeeee
Q psy1859          96 DGFNK-KRLCQ----FHRYDTGITSL-FHQEYN--TFATGGSDGYVNIWDGFNKKRLCQF  147 (162)
Q Consensus        96 d~~~~-~~~~~----~~~~~~~v~~~-~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~  147 (162)
                      |++.. .+...    -..|.+.+..+ |++-|.  +|+..-.-+.+.+.|+|+++..+.+
T Consensus       231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence            99974 33322    23578889999 998554  6777777789999999998755544

>KOG0974|consensus

Probab=99.06  E-value=7.5e-09  Score=77.16  Aligned_cols=131  Identities=12%  Similarity=0.146  Sum_probs=94.9

Q ss_pred             eCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccc
Q psy1859          23 PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR  102 (162)
Q Consensus        23 ~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~  102 (162)
                      -+.+++++++.+..+-+|++....    ......+....     ......-+.++++.-++++|+.-+.|.+|+..-.+.
T Consensus        97 ~e~k~i~l~~~~ns~~i~d~~~~~----~~~~i~~~er~-----~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~  167 (967)
T KOG0974|consen   97 EENKKIALVTSRNSLLIRDSKNSS----VLSKIQSDERC-----TLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK  167 (967)
T ss_pred             hhcceEEEEEcCceEEEEecccCc----eehhcCCCceE-----EEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence            345667777888888886654322    11111111100     111334455577777899999999999999884333


Q ss_pred             eeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeee-eeccCCCceeEEEecCC
Q psy1859         103 LCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLC-QFHRYDTGITSLCFSYD  162 (162)
Q Consensus       103 ~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~v~~~pd  162 (162)
                      ...+.+|.+.+..+ ++-||+++++.+.|.++++|++.+.+... +.-+|...|..++|.|+
T Consensus       168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n  229 (967)
T KOG0974|consen  168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN  229 (967)
T ss_pred             cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc
Confidence            33678999999999 99999999999999999999999887655 56689999999999874

>KOG2321|consensus

Probab=99.05  E-value=5.6e-09  Score=73.77  Aligned_cols=131  Identities=27%  Similarity=0.346  Sum_probs=91.6

Q ss_pred             EEEEEe-eCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEE
Q psy1859          17 RCIKCF-PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW   95 (162)
Q Consensus        17 ~~i~~~-~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~w   95 (162)
                      ..++++ |....++.|+...   ||.++...  ......+.....         .+.++..++...+|++|+.+|.|..|
T Consensus       137 RDm~y~~~scDly~~gsg~e---vYRlNLEq--GrfL~P~~~~~~---------~lN~v~in~~hgLla~Gt~~g~VEfw  202 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGSGSE---VYRLNLEQ--GRFLNPFETDSG---------ELNVVSINEEHGLLACGTEDGVVEFW  202 (703)
T ss_pred             ccccccCCCccEEEeecCcc---eEEEEccc--cccccccccccc---------cceeeeecCccceEEecccCceEEEe
Confidence            345555 3455555554443   34466655  444434433322         69999999999999999999999999


Q ss_pred             eCCCccceeeeee------cc-----cceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec-cCCCceeEEEecC
Q psy1859          96 DGFNKKRLCQFHR------YD-----TGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH-RYDTGITSLCFSY  161 (162)
Q Consensus        96 d~~~~~~~~~~~~------~~-----~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~p  161 (162)
                      |.+....+..+..      +.     ..|+++ |+.+|-.+++|..+|.+.|||+++.+++..-. ....+|..+.|.+
T Consensus       203 DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~  281 (703)
T KOG2321|consen  203 DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQD  281 (703)
T ss_pred             cchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccc
Confidence            9998766655532      21     248899 99999999999999999999999988765432 2334677777743

>KOG2695|consensus

Probab=99.05  E-value=1e-09  Score=73.08  Aligned_cols=134  Identities=16%  Similarity=0.122  Sum_probs=94.3

Q ss_pred             EEEEEeeCCCeEEEEcCCCcEEEEEecCCc-ccceeeeeeeeeeeccCcccceeceEEEEecC-CCCEEEEecCCCeEEE
Q psy1859          17 RCIKCFPNKQGYVLSSIEGRAAVEYLDTGP-EMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ-EYNTFATGGSDGYVNI   94 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~~v~~   94 (162)
                      .++.|...++.+..|..+|.|..+|+.... +....... -.         |...|+++..-. +++.|++.+.+|.|.+
T Consensus       256 fAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-ly---------h~Ssvtslq~Lq~s~q~LmaS~M~gkikL  325 (425)
T KOG2695|consen  256 FALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LY---------HDSSVTSLQILQFSQQKLMASDMTGKIKL  325 (425)
T ss_pred             HHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE-EE---------cCcchhhhhhhccccceEeeccCcCceeE
Confidence            344566667888899999999996655431 00111111 11         445788887766 5688899999999999


Q ss_pred             EeCCCccc---eeeeeecccceeEE---EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC----CceeEEEec
Q psy1859          95 WDGFNKKR---LCQFHRYDTGITSL---FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD----TGITSLCFS  160 (162)
Q Consensus        95 wd~~~~~~---~~~~~~~~~~v~~~---~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~v~~v~~~  160 (162)
                      ||++.-++   +....+|-....-+   .++....++++++|...+||.++.+..+.++....    ..+.+++|.
T Consensus       326 yD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  326 YDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             eeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            99997666   77777776554444   67777888999999999999999999888775322    234555553

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.05  E-value=5.1e-08  Score=67.86  Aligned_cols=134  Identities=15%  Similarity=0.017  Sum_probs=94.2

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCC-cEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEG-RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV   92 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v   92 (162)
                      +.++-..+..+++-++.|..|| .+-|++.+...  .+..   ...-         +.|.++..+|+|+.++.+.....+
T Consensus       360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~---e~~l---------g~I~av~vs~dGK~~vvaNdr~el  425 (668)
T COG4946         360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRI---EKDL---------GNIEAVKVSPDGKKVVVANDRFEL  425 (668)
T ss_pred             CceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEe---eCCc---------cceEEEEEcCCCcEEEEEcCceEE
Confidence            4455555666667788899998 67785544322  2222   1111         148999999999999999999999


Q ss_pred             EEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCC----eEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          93 NIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDG----YVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .+.|+.+++....-+...+-|+.+ |||++++++.+-.+|    .|+++|+.+++...... ..+.-.+-+|.||
T Consensus       426 ~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d  499 (668)
T COG4946         426 WVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPD  499 (668)
T ss_pred             EEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCC
Confidence            999999987654444455678888 999999999997765    69999998887655432 2333344555554

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=2.9e-08  Score=70.80  Aligned_cols=137  Identities=10%  Similarity=-0.021  Sum_probs=80.9

Q ss_pred             cccccEEEEEEeeCCCeEEE-EcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec-C
Q psy1859          11 SLKFQTRCIKCFPNKQGYVL-SSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-S   88 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~-~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~   88 (162)
                      ..++.....+|+|+|+.++. .+.+|...||.++..++..+.   +..+.         ......+|+|+++.++..+ .
T Consensus       259 ~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~---lt~~~---------~~~~~p~wSpDG~~I~f~s~~  326 (448)
T PRK04792        259 SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR---ITRHR---------AIDTEPSWHPDGKSLIFTSER  326 (448)
T ss_pred             CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE---CccCC---------CCccceEECCCCCEEEEEECC
Confidence            34455557889999998775 466777777777765522221   11121         1356789999998776544 3


Q ss_pred             C--CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecC-CC--eEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          89 D--GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS-DG--YVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        89 d--~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +  ..|+++|+.+++.. .+.......... |+|||++++..+. ++  .|.++|+.+++.. .+.... ......|+||
T Consensus       327 ~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~d~~ps~spd  403 (448)
T PRK04792        327 GGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-LDESPSVAPN  403 (448)
T ss_pred             CCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-CCCCceECCC
Confidence            3  35667787766543 232222233446 9999998877654 33  4666788777543 232221 2234467775

>KOG1334|consensus

Probab=99.03  E-value=8.5e-10  Score=76.26  Aligned_cols=123  Identities=16%  Similarity=0.205  Sum_probs=94.9

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcc------c--ceeee-eeeeeeeccCcccceeceEEEEe-cCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPE------M--QKMKY-AFKCHRIKEDGIEKIYPVNAISF-HQEY   80 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~------~--~~~~~-~~~~~~~~~~~~~~~~~v~~~~~-~p~~   80 (162)
                      .-..+|++++++.++.-++++..|-.|+++.-+...+      .  ...+. .+++|+..+       .|.++-| -|..
T Consensus       334 d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~-------TVKgVNFfGPrs  406 (559)
T KOG1334|consen  334 DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSR-------TVKGVNFFGPRS  406 (559)
T ss_pred             cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccc-------ccceeeeccCcc
Confidence            3456789999998888788888888888843222221      0  01122 267777654       5777776 6777


Q ss_pred             CEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCC
Q psy1859          81 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFN  140 (162)
Q Consensus        81 ~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~  140 (162)
                      .++++|+..|.|.+|+-.+++.++.+.+....|.|+ =+|--..|++++-|..|+||-..+
T Consensus       407 EyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  407 EYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             ceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence            899999999999999999999999888877788888 888888999999999999998743

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.03  E-value=1.5e-07  Score=65.10  Aligned_cols=143  Identities=8%  Similarity=0.017  Sum_probs=87.1

Q ss_pred             ccccEEEEEEeeCCCeEEEEcC-CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEE-EEecCC
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF-ATGGSD   89 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~d   89 (162)
                      ...|..++.++|+++++++... ...|.+++++...........+.....        ...+.++|+|+++++ ++...+
T Consensus       142 ~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G--------~GPRh~~f~pdg~~~Yv~~e~s  213 (345)
T PF10282_consen  142 EGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG--------SGPRHLAFSPDGKYAYVVNELS  213 (345)
T ss_dssp             SSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT--------SSEEEEEE-TTSSEEEEEETTT
T ss_pred             ccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC--------CCCcEEEEcCCcCEEEEecCCC
Confidence            3466788999999998877643 356777777765422222222222221        257899999999655 555678


Q ss_pred             CeEEEEeCC--Ccc--ceeeeeec------ccceeEE-EcCCCCEEEEec-CCCeEEEEeCC--Cce--eeeeeccCCCc
Q psy1859          90 GYVNIWDGF--NKK--RLCQFHRY------DTGITSL-FHQEYNTFATGG-SDGYVNIWDGF--NKK--RLCQFHRYDTG  153 (162)
Q Consensus        90 ~~v~~wd~~--~~~--~~~~~~~~------~~~v~~~-~~~~~~~l~~~~-~d~~i~iwd~~--~~~--~~~~~~~~~~~  153 (162)
                      +.|.++++.  +++  .+..+...      ......+ ++|||++|+++. .++.|.+|++.  +++  .+..+......
T Consensus       214 ~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~  293 (345)
T PF10282_consen  214 NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF  293 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS
T ss_pred             CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC
Confidence            999999988  332  22222211      1246677 999999988876 56789999983  233  34444433445


Q ss_pred             eeEEEecCC
Q psy1859         154 ITSLCFSYD  162 (162)
Q Consensus       154 v~~v~~~pd  162 (162)
                      .+.++++||
T Consensus       294 Pr~~~~s~~  302 (345)
T PF10282_consen  294 PRHFAFSPD  302 (345)
T ss_dssp             EEEEEE-TT
T ss_pred             ccEEEEeCC
Confidence            788888875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.03  E-value=1.3e-07  Score=65.85  Aligned_cols=130  Identities=14%  Similarity=0.121  Sum_probs=80.8

Q ss_pred             EEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec-CCCeEEEEe
Q psy1859          18 CIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-SDGYVNIWD   96 (162)
Q Consensus        18 ~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~v~~wd   96 (162)
                      .+.++||++++++++.||.+.+  +|..+  .+.+.+++...          ...+++++++|++++++. ..+.+.++|
T Consensus        41 ~~~~s~Dgr~~yv~~rdg~vsv--iD~~~--~~~v~~i~~G~----------~~~~i~~s~DG~~~~v~n~~~~~v~v~D  106 (369)
T PF02239_consen   41 GLKFSPDGRYLYVANRDGTVSV--IDLAT--GKVVATIKVGG----------NPRGIAVSPDGKYVYVANYEPGTVSVID  106 (369)
T ss_dssp             EEE-TT-SSEEEEEETTSEEEE--EETTS--SSEEEEEE-SS----------EEEEEEE--TTTEEEEEEEETTEEEEEE
T ss_pred             EEEecCCCCEEEEEcCCCeEEE--EECCc--ccEEEEEecCC----------CcceEEEcCCCCEEEEEecCCCceeEec
Confidence            4678999999999999999999  55554  44444444333          367899999998888765 689999999


Q ss_pred             CCCccceeeeeec-------ccceeEE-EcCCCCEE-EEecCCCeEEEEeCCCceee--eeeccCCCceeEEEecCC
Q psy1859          97 GFNKKRLCQFHRY-------DTGITSL-FHQEYNTF-ATGGSDGYVNIWDGFNKKRL--CQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        97 ~~~~~~~~~~~~~-------~~~v~~~-~~~~~~~l-~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~v~~v~~~pd  162 (162)
                      .++.++++.+...       ...+..+ .+|....+ +..-+.+.|.+-|....+.+  ..+. .........|+||
T Consensus       107 ~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~dpd  182 (369)
T PF02239_consen  107 AETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFDPD  182 (369)
T ss_dssp             TTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-TT
T ss_pred             cccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-ccccccccccCcc
Confidence            9999888877643       2345667 77877744 45555688988897665432  2222 2334556666654

...

>KOG1517|consensus

Probab=99.02  E-value=1e-08  Score=77.13  Aligned_cols=145  Identities=15%  Similarity=0.184  Sum_probs=92.3

Q ss_pred             cEEEEEEee--CCCeEEEEcCCCcEEEEEecCCc-ccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          15 QTRCIKCFP--NKQGYVLSSIEGRAAVEYLDTGP-EMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        15 ~~~~i~~~~--~~~~l~~~~~~g~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      .|+.+.+-.  |...+++|+.||.|+||+=-... .+.+.+....+-..-..+..-  .-.-++|......|++++.-..
T Consensus      1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~--~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARG--TGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred             ccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCC--CCeeeehhhhCCeEEecCCeeE
Confidence            345555443  45678999999999997522211 112332222211110001111  1246788776666666666899


Q ss_pred             EEEEeCCCccceeeeee-cccceeEE--EcCCCCEEEEecCCCeEEEEeCCCce---eeeeeccCCCc--eeEEEecC
Q psy1859          92 VNIWDGFNKKRLCQFHR-YDTGITSL--FHQEYNTFATGGSDGYVNIWDGFNKK---RLCQFHRYDTG--ITSLCFSY  161 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~-~~~~v~~~--~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~--v~~v~~~p  161 (162)
                      |+|||......+..+.. ....++.+  -.+.|..+++|..||.|++||.|...   .+..+..|...  |..+.+.+
T Consensus      1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~ 1266 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQR 1266 (1387)
T ss_pred             EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeec
Confidence            99999998877776653 34456666  33468999999999999999998653   46677778776  77777754

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.98  E-value=2.9e-09  Score=49.58  Aligned_cols=30  Identities=33%  Similarity=0.709  Sum_probs=27.6

Q ss_pred             ceeceEEEEecCCCCEEEEecCCCeEEEEe
Q psy1859          67 KIYPVNAISFHQEYNTFATGGSDGYVNIWD   96 (162)
Q Consensus        67 ~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd   96 (162)
                      |...|.+++|+|++.+|++++.|+.|++||
T Consensus        10 h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   10 HSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            334899999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1334|consensus

Probab=98.94  E-value=4.2e-09  Score=72.93  Aligned_cols=152  Identities=19%  Similarity=0.194  Sum_probs=104.3

Q ss_pred             eeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeecc------------------------
Q psy1859           7 RRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE------------------------   62 (162)
Q Consensus         7 ~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~------------------------   62 (162)
                      .....++|-+..+.|+..|..+++|+.|..+.+|+|....  .+..+. .+|..+.                        
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~--~~l~f~-SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS--PKLSFE-SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccC--cccccc-cccccchhhhhccCCCCCcCceeccccCcee
Confidence            3456677778889999999999999999999999996543  111110 1111111                        


Q ss_pred             --------------CcccceeceEEEEecCCC-CEEEEecCCCeEEEEeCCCccceeeeee---ccc---ceeEE-EcC-
Q psy1859          63 --------------DGIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWDGFNKKRLCQFHR---YDT---GITSL-FHQ-  119 (162)
Q Consensus        63 --------------~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v~~wd~~~~~~~~~~~~---~~~---~v~~~-~~~-  119 (162)
                                    ....|.++|.-++.-|+. ..|.+++.|+.+.-+|++.+.+...+.+   ...   ....+ .+| 
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence                          123477788899999987 7889999999999999998765444332   222   34566 778 


Q ss_pred             CCCEEEEecCCCeEEEEeCCCce------eeeeecc------CCCceeEEEecC
Q psy1859         120 EYNTFATGGSDGYVNIWDGFNKK------RLCQFHR------YDTGITSLCFSY  161 (162)
Q Consensus       120 ~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~------~~~~v~~v~~~p  161 (162)
                      +...+++++.|..+++||.+.-.      .+..+..      ..-.|++++|+.
T Consensus       293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh  346 (559)
T KOG1334|consen  293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH  346 (559)
T ss_pred             CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC
Confidence            44589999999999999987432      1222222      233688888874

>KOG1064|consensus

Probab=98.93  E-value=2.2e-09  Score=84.29  Aligned_cols=121  Identities=15%  Similarity=0.201  Sum_probs=90.9

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeecc-------------------------------
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE-------------------------------   62 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~-------------------------------   62 (162)
                      ..++.+.|+.+|+.+..+..||.+.+|...+.     .....++|....                               
T Consensus      2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk-----~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK-----PYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPP 2326 (2439)
T ss_pred             chhhhhhhcccCCceeeeccCCceeecccCCc-----ceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCc
Confidence            44556778899999999999999999765532     122222222111                               


Q ss_pred             ----CcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEEEcCCCCEEEEecCCCeEEEEeC
Q psy1859          63 ----DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDG  138 (162)
Q Consensus        63 ----~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~  138 (162)
                          -...|...++++++.|..++|++|+.+|.|++||++..+....++.        ++ ...++++|+..|.++||++
T Consensus      2327 ~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2327 MNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred             ccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEc
Confidence                1256888999999999999999999999999999998887776654        23 4568999999999999999


Q ss_pred             CCceeeeeec
Q psy1859         139 FNKKRLCQFH  148 (162)
Q Consensus       139 ~~~~~~~~~~  148 (162)
                      .....+.++.
T Consensus      2398 s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2398 SEFGLLHTFP 2407 (2439)
T ss_pred             cccchhhcCc
Confidence            8776666553

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.92  E-value=1.3e-06  Score=60.53  Aligned_cols=146  Identities=8%  Similarity=-0.035  Sum_probs=89.6

Q ss_pred             cccccEEEEEEeeCCCeEEEE-cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec-C
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-S   88 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~   88 (162)
                      +....-+.++|+|+++++++. -.++.|.++.++...+..+..........   +.........|+++|++++|.++. .
T Consensus       189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~i~ispdg~~lyvsnr~  265 (345)
T PF10282_consen  189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE---GFTGENAPAEIAISPDGRFLYVSNRG  265 (345)
T ss_dssp             STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET---TSCSSSSEEEEEE-TTSSEEEEEECT
T ss_pred             ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc---cccccCCceeEEEecCCCEEEEEecc
Confidence            334455789999999887555 55688999888854432333322222111   011112477899999998766654 6


Q ss_pred             CCeEEEEeCCC--cc--ceeeeeecccceeEE-EcCCCCEEEEec-CCCeEEEEeC--CCceeeeeec-cCCCceeEEEe
Q psy1859          89 DGYVNIWDGFN--KK--RLCQFHRYDTGITSL-FHQEYNTFATGG-SDGYVNIWDG--FNKKRLCQFH-RYDTGITSLCF  159 (162)
Q Consensus        89 d~~v~~wd~~~--~~--~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~iwd~--~~~~~~~~~~-~~~~~v~~v~~  159 (162)
                      .+.|.+|++..  ++  .+..+.........+ ++|+|++|+++. .++.|.+|++  ++|.....-. ..-....||.|
T Consensus       266 ~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  266 SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            78899999943  32  333444445557888 999999999887 5578999866  5666433321 22335677776

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1064|consensus

Probab=98.92  E-value=4e-09  Score=82.85  Aligned_cols=122  Identities=20%  Similarity=0.306  Sum_probs=90.9

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEE
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI   94 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~   94 (162)
                      .+.++.-+|...+.++|+.||.+++|.|....  ....+...+. .         .|+.+.|+.+|+.+..+..||.+.+
T Consensus      2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~--~v~~~rt~g~-s---------~vtr~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ--QVVCFRTAGN-S---------RVTRSRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred             ceeeecCCCCCceEEecCCCceEEEEeccCCC--eEEEeeccCc-c---------hhhhhhhcccCCceeeeccCCceee
Confidence            34667778888999999999999999887654  3333332232 1         5888888888888888888888888


Q ss_pred             EeCCCc-------------------------------------------cceeeeeecccceeEE-EcCCCCEEEEecCC
Q psy1859          95 WDGFNK-------------------------------------------KRLCQFHRYDTGITSL-FHQEYNTFATGGSD  130 (162)
Q Consensus        95 wd~~~~-------------------------------------------~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d  130 (162)
                      |.....                                           ..-....+|.+.++++ +-|..+++++|+.+
T Consensus      2278 ~q~~pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2278 WQASPKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred             cccCCcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCc
Confidence            865411                                           0001115788889999 99999999999999


Q ss_pred             CeEEEEeCCCceeeeeec
Q psy1859         131 GYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus       131 ~~i~iwd~~~~~~~~~~~  148 (162)
                      |.|++||++..+.+++++
T Consensus      2358 G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred             CcEEEeehHHHHHHHHhh
Confidence            999999999877665553

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.92  E-value=2.7e-07  Score=65.69  Aligned_cols=71  Identities=15%  Similarity=0.190  Sum_probs=58.8

Q ss_pred             eceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc
Q psy1859          69 YPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK  141 (162)
Q Consensus        69 ~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~  141 (162)
                      ..|.+++++|+...++.|+.||.|.+||...+..  ......-..+.+ |||+|..+++|+.-|.+.+||+.-.
T Consensus       260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             CcceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            3799999999999999999999999999876532  222334456677 9999999999999999999998643

>KOG2315|consensus

Probab=98.91  E-value=1.3e-07  Score=66.64  Aligned_cols=88  Identities=24%  Similarity=0.328  Sum_probs=69.4

Q ss_pred             ceEEEEecCCCCEEEEe--cCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCC---CeEEEEeCCCcee
Q psy1859          70 PVNAISFHQEYNTFATG--GSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSD---GYVNIWDGFNKKR  143 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~--~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d---~~i~iwd~~~~~~  143 (162)
                      +|.++.|+|+++.|+++  -.=-.+.++|++ ++++..+  ..++-.++ |+|.|++++.++.+   |.+-|||+.+.++
T Consensus       272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~  348 (566)
T KOG2315|consen  272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL  348 (566)
T ss_pred             CceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh
Confidence            89999999999877654  355788999987 5566655  35667778 99999999998865   7899999999888


Q ss_pred             eeeeccCCCceeEEEecCC
Q psy1859         144 LCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       144 ~~~~~~~~~~v~~v~~~pd  162 (162)
                      +..+..-..  +-+.|+||
T Consensus       349 i~~~~a~~t--t~~eW~Pd  365 (566)
T KOG2315|consen  349 IAKFKAANT--TVFEWSPD  365 (566)
T ss_pred             ccccccCCc--eEEEEcCC
Confidence            887765433  34788887

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.87  E-value=3.9e-07  Score=64.53  Aligned_cols=132  Identities=8%  Similarity=-0.049  Sum_probs=78.9

Q ss_pred             cEEEEEEeeCCCe-EEEEcCC-CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEE-EecC--C
Q psy1859          15 QTRCIKCFPNKQG-YVLSSIE-GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA-TGGS--D   89 (162)
Q Consensus        15 ~~~~i~~~~~~~~-l~~~~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~--d   89 (162)
                      ....-.|+|+|+. ++..+.+ +.-.||.+|..++..+.+....+            .....+|+|+|+.++ +.+.  +
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g------------~~~~~~~SPDG~~la~~~~~~g~  256 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG------------MLVVSDVSKDGSKLLLTMAPKGQ  256 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC------------cEEeeEECCCCCEEEEEEccCCC
Confidence            4556789999985 6655555 34566667776533444333221            355678999996655 4433  4


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecC-CC--eEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS-DG--YVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ..|.++|+..++. ..+.......... |+|||+.++..+. .+  .|.+.|+.+++..+.... ..  ....|+||
T Consensus       257 ~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPD  329 (419)
T PRK04043        257 PDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTY  329 (419)
T ss_pred             cEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCC
Confidence            5788888877653 3343333323344 9999987766653 33  688889887765333221 11  22478886

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.86  E-value=3e-07  Score=60.06  Aligned_cols=85  Identities=12%  Similarity=0.239  Sum_probs=58.5

Q ss_pred             ceeceEEEEecCCCCEEEEecCC-C----------eEEEEeCCCcccee--------------------ee---------
Q psy1859          67 KIYPVNAISFHQEYNTFATGGSD-G----------YVNIWDGFNKKRLC--------------------QF---------  106 (162)
Q Consensus        67 ~~~~v~~~~~~p~~~~l~~~~~d-~----------~v~~wd~~~~~~~~--------------------~~---------  106 (162)
                      +...|.++.++|..++|+.|+.. .          -+..|.+-++.+..                    ++         
T Consensus       146 yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~  225 (282)
T PF15492_consen  146 YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ  225 (282)
T ss_pred             CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc
Confidence            34589999999998888877542 1          24556544322110                    00         


Q ss_pred             eecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC
Q psy1859         107 HRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD  151 (162)
Q Consensus       107 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  151 (162)
                      ......|..+ .||||..|++...+|.|.+|++.+-+....+..++
T Consensus       226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e  271 (282)
T PF15492_consen  226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE  271 (282)
T ss_pred             ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence            0124567788 99999999999999999999998877766665443

>KOG4714|consensus

Probab=98.84  E-value=5.4e-09  Score=67.25  Aligned_cols=71  Identities=25%  Similarity=0.416  Sum_probs=61.9

Q ss_pred             ceEEEEecCCC-CEEEEecCCCeEEEEeCCCcc-ceeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCC
Q psy1859          70 PVNAISFHQEY-NTFATGGSDGYVNIWDGFNKK-RLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFN  140 (162)
Q Consensus        70 ~v~~~~~~p~~-~~l~~~~~d~~v~~wd~~~~~-~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~  140 (162)
                      .|.+++-+|.. +++++|+.||.+-+||.++.. +...+..|+.++..+ |+| ++..|+++++||.+..||..+
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            58999999977 677888999999999999864 345667899999999 999 888999999999999999864

>KOG2314|consensus

Probab=98.84  E-value=7.5e-08  Score=68.07  Aligned_cols=131  Identities=16%  Similarity=0.111  Sum_probs=91.6

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC-----
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-----   88 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-----   88 (162)
                      ...+-+.|||-|.+|++-...| |.+  |...+  ......+ .|+          .|.-+.|||..++|++=+.     
T Consensus       211 WTetyv~wSP~GTYL~t~Hk~G-I~l--WGG~~--f~r~~RF-~Hp----------~Vq~idfSP~EkYLVT~s~~p~~~  274 (698)
T KOG2314|consen  211 WTETYVRWSPKGTYLVTFHKQG-IAL--WGGES--FDRIQRF-YHP----------GVQFIDFSPNEKYLVTYSPEPIIV  274 (698)
T ss_pred             ceeeeEEecCCceEEEEEeccc-eee--ecCcc--HHHHHhc-cCC----------CceeeecCCccceEEEecCCcccc
Confidence            3445688999999999866555 566  54433  2222221 143          4899999999999998543     


Q ss_pred             ------CCeEEEEeCCCccceeeeee--cccceeEE--EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEE
Q psy1859          89 ------DGYVNIWDGFNKKRLCQFHR--YDTGITSL--FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLC  158 (162)
Q Consensus        89 ------d~~v~~wd~~~~~~~~~~~~--~~~~v~~~--~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~  158 (162)
                            ...++|||+++|...+.+..  ....+.-+  ||.|++|+|-... ..|.||+..+..++..-...-++|....
T Consensus       275 ~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~Fs  353 (698)
T KOG2314|consen  275 EEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFS  353 (698)
T ss_pred             CcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcc
Confidence                  25789999999998888876  33445555  9999999998876 4789999866444333233345678888


Q ss_pred             ecC
Q psy1859         159 FSY  161 (162)
Q Consensus       159 ~~p  161 (162)
                      |+|
T Consensus       354 wsP  356 (698)
T KOG2314|consen  354 WSP  356 (698)
T ss_pred             cCC
Confidence            887

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.83  E-value=5.1e-07  Score=63.92  Aligned_cols=135  Identities=8%  Similarity=-0.101  Sum_probs=81.0

Q ss_pred             cccccEEEEEEeeCCCeEEEE-cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec-C
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-S   88 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~   88 (162)
                      ..++......|+|||+.++.. +.++.-.||.++...+..+.+..   ...         ......|+|+|+.|+-.+ .
T Consensus       230 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~---~~~---------~d~~p~~SPDG~~I~F~Sdr  297 (419)
T PRK04043        230 SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITN---YPG---------IDVNGNFVEDDKRIVFVSDR  297 (419)
T ss_pred             cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEccc---CCC---------ccCccEECCCCCEEEEEECC
Confidence            355556677899999877654 44555566667765432222211   111         123457999997666554 3


Q ss_pred             CC--eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCC---------CeEEEEeCCCceeeeeeccCCCceeE
Q psy1859          89 DG--YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSD---------GYVNIWDGFNKKRLCQFHRYDTGITS  156 (162)
Q Consensus        89 d~--~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~v~~  156 (162)
                      .+  .|.+.|+.+++..+.... ..  ... |+|||++++.....         ..|.+.|+.++.. ..+.... ....
T Consensus       298 ~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~-~~~~  372 (419)
T PRK04043        298 LGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANG-VNQF  372 (419)
T ss_pred             CCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCC-CcCC
Confidence            33  677888877655332221 11  235 99999988777643         3688889877754 3343322 3345


Q ss_pred             EEecCC
Q psy1859         157 LCFSYD  162 (162)
Q Consensus       157 v~~~pd  162 (162)
                      ..|+||
T Consensus       373 p~~SPD  378 (419)
T PRK04043        373 PRFSSD  378 (419)
T ss_pred             eEECCC
Confidence            788887

>KOG4532|consensus

Probab=98.79  E-value=4e-07  Score=59.22  Aligned_cols=91  Identities=14%  Similarity=0.048  Sum_probs=68.5

Q ss_pred             eEEEEecCCCCEEEEecCCCeEEEEeCCCcc-ceeeee-e-cccceeEE-EcCCCCEEEEecCCCeEEEEeCCCcee-ee
Q psy1859          71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKK-RLCQFH-R-YDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKR-LC  145 (162)
Q Consensus        71 v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~-~~~~~~-~-~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~  145 (162)
                      +.+++++++++++++.+....|..|.+.... .+..+. . ....-.+. |+.....+|++.+||++.|||+|.... ..
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~  240 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA  240 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence            7889999999999999999999999988643 222222 1 22223344 898889999999999999999986542 22


Q ss_pred             ----eeccCCCceeEEEecC
Q psy1859         146 ----QFHRYDTGITSLCFSY  161 (162)
Q Consensus       146 ----~~~~~~~~v~~v~~~p  161 (162)
                          +-..|.+.+..+.|+|
T Consensus       241 ~~sstrp~hnGa~R~c~Fsl  260 (344)
T KOG4532|consen  241 EISSTRPHHNGAFRVCRFSL  260 (344)
T ss_pred             hhcccCCCCCCceEEEEecC
Confidence                2235888999999985

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.79  E-value=1.6e-08  Score=66.95  Aligned_cols=133  Identities=16%  Similarity=0.151  Sum_probs=90.2

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGS   88 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~   88 (162)
                      ..+..|+.+|+++.+...+++ ++|-.|.+|..+...... .+..++.+...+    ...-|++..|+|.. +.+.-.+.
T Consensus       169 NaH~yhiNSiS~NsD~et~lS-aDdLrINLWnl~i~D~sF-nIVDiKP~nmee----LteVItSaeFhp~~cn~fmYSsS  242 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLS-ADDLRINLWNLEIIDGSF-NIVDIKPHNMEE----LTEVITSAEFHPEMCNVFMYSSS  242 (460)
T ss_pred             ccceeEeeeeeecCchheeee-ccceeeeeccccccCCce-EEEeccCccHHH----HHHHHhhcccCHhHcceEEEecC
Confidence            557789999999999887777 567888997776544211 222334343221    33468899999976 77888889


Q ss_pred             CCeEEEEeCCCccce------eee----------eecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc-eeeeeecc
Q psy1859          89 DGYVNIWDGFNKKRL------CQF----------HRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK-KRLCQFHR  149 (162)
Q Consensus        89 d~~v~~wd~~~~~~~------~~~----------~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~  149 (162)
                      .|.|++-|+++....      ...          ..-...|..+ |+++|+++++-+. .++++||++.. .++.++..
T Consensus       243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~  320 (460)
T COG5170         243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPM  320 (460)
T ss_pred             CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeech
Confidence            999999999954221      111          1123456677 9999999887743 58999999754 45665543

>KOG3914|consensus

Probab=98.78  E-value=5.8e-08  Score=65.76  Aligned_cols=78  Identities=17%  Similarity=0.172  Sum_probs=58.7

Q ss_pred             EEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEE
Q psy1859          16 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW   95 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~w   95 (162)
                      +..++++||+++++++..|..|++-.+...    -.+..+        ..+|...|..++.-++ +.|++++.|+++++|
T Consensus       154 l~dVavS~D~~~IitaDRDEkIRvs~ypa~----f~Iesf--------clGH~eFVS~isl~~~-~~LlS~sGD~tlr~W  220 (390)
T KOG3914|consen  154 LLDVAVSPDDQFIITADRDEKIRVSRYPAT----FVIESF--------CLGHKEFVSTISLTDN-YLLLSGSGDKTLRLW  220 (390)
T ss_pred             hheeeecCCCCEEEEecCCceEEEEecCcc----cchhhh--------ccccHhheeeeeeccC-ceeeecCCCCcEEEE
Confidence            467899999999999999999998434321    112111        2234558999999875 458999999999999


Q ss_pred             eCCCccceeee
Q psy1859          96 DGFNKKRLCQF  106 (162)
Q Consensus        96 d~~~~~~~~~~  106 (162)
                      |+.+++.+..+
T Consensus       221 d~~sgk~L~t~  231 (390)
T KOG3914|consen  221 DITSGKLLDTC  231 (390)
T ss_pred             ecccCCccccc
Confidence            99999877554

>KOG1354|consensus

Probab=98.78  E-value=8.6e-08  Score=64.17  Aligned_cols=127  Identities=17%  Similarity=0.216  Sum_probs=86.3

Q ss_pred             ccEEEEEEeeCC--CeEEEEcCCCcEEEEEecCCcccc-----------ee-----e-------eeeeeeeeccCcccce
Q psy1859          14 FQTRCIKCFPNK--QGYVLSSIEGRAAVEYLDTGPEMQ-----------KM-----K-------YAFKCHRIKEDGIEKI   68 (162)
Q Consensus        14 ~~~~~i~~~~~~--~~l~~~~~~g~i~i~~~~~~~~~~-----------~~-----~-------~~~~~~~~~~~~~~~~   68 (162)
                      ..+..|.|.+++  ..+++.+.|.++++|.......+.           ..     +       ..+..........+|+
T Consensus        85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt  164 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT  164 (433)
T ss_pred             hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence            345678898864  467888999999998875443111           00     0       0011111122567899


Q ss_pred             eceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeee---eec-----ccceeEE-EcCC-CCEEEEecCCCeEEEEeC
Q psy1859          69 YPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF---HRY-----DTGITSL-FHQE-YNTFATGGSDGYVNIWDG  138 (162)
Q Consensus        69 ~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~---~~~-----~~~v~~~-~~~~-~~~l~~~~~d~~i~iwd~  138 (162)
                      ..+.++.++.++..++++ .|-.|.+|++.-......+   +.+     ..-|++. |+|. -..++.++..|+|++.|+
T Consensus       165 yhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm  243 (433)
T KOG1354|consen  165 YHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM  243 (433)
T ss_pred             eEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence            999999999999888877 5888999998754332222   222     2356777 9994 457888889999999999


Q ss_pred             CCc
Q psy1859         139 FNK  141 (162)
Q Consensus       139 ~~~  141 (162)
                      |..
T Consensus       244 R~~  246 (433)
T KOG1354|consen  244 RQS  246 (433)
T ss_pred             hhh
Confidence            853

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.78  E-value=2.1e-06  Score=57.85  Aligned_cols=139  Identities=11%  Similarity=0.048  Sum_probs=91.8

Q ss_pred             cEEEEEEeeCCCeEEEEc---CCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC-CC
Q psy1859          15 QTRCIKCFPNKQGYVLSS---IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-DG   90 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~---~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~   90 (162)
                      ..+-|+++|+++.|.++.   .+|.|.-+.+|...+....+-.......         +-..+++++++++++++.. .|
T Consensus        41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~---------~p~yvsvd~~g~~vf~AnY~~g  111 (346)
T COG2706          41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS---------PPCYVSVDEDGRFVFVANYHSG  111 (346)
T ss_pred             CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC---------CCeEEEECCCCCEEEEEEccCc
Confidence            345689999999888873   3578888888876422222211111111         3478999999998888874 58


Q ss_pred             eEEEEeCCC-ccceee--eeecccc----------eeEE-EcCCCCEEEEecC-CCeEEEEeCCCceeeeee---ccCCC
Q psy1859          91 YVNIWDGFN-KKRLCQ--FHRYDTG----------ITSL-FHQEYNTFATGGS-DGYVNIWDGFNKKRLCQF---HRYDT  152 (162)
Q Consensus        91 ~v~~wd~~~-~~~~~~--~~~~~~~----------v~~~-~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~---~~~~~  152 (162)
                      .|.++-++. |.+...  ...|.+.          +... +.|++++|++.+- --.|.+|++..++....-   .....
T Consensus       112 ~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~  191 (346)
T COG2706         112 SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGA  191 (346)
T ss_pred             eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCC
Confidence            999999976 432221  1123332          6666 9999999999863 347999999877642211   13455


Q ss_pred             ceeEEEecCC
Q psy1859         153 GITSLCFSYD  162 (162)
Q Consensus       153 ~v~~v~~~pd  162 (162)
                      ..+.|.|+|+
T Consensus       192 GPRHi~FHpn  201 (346)
T COG2706         192 GPRHIVFHPN  201 (346)
T ss_pred             CcceEEEcCC
Confidence            6788999986

>KOG1409|consensus

Probab=98.75  E-value=1.2e-07  Score=63.36  Aligned_cols=78  Identities=17%  Similarity=0.251  Sum_probs=60.8

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      ...+.+.+.+++|.|....+.+|..|..+.+|++-...   ...+.+.+|..         .|..+...+--+.+++++.
T Consensus       193 ~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~---g~~~el~gh~~---------kV~~l~~~~~t~~l~S~~e  260 (404)
T KOG1409|consen  193 FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK---GTAYELQGHND---------KVQALSYAQHTRQLISCGE  260 (404)
T ss_pred             EcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc---ceeeeeccchh---------hhhhhhhhhhheeeeeccC
Confidence            34455667888999999999999999999997776543   23344445544         5888877777789999999


Q ss_pred             CCeEEEEeCC
Q psy1859          89 DGYVNIWDGF   98 (162)
Q Consensus        89 d~~v~~wd~~   98 (162)
                      ||.|.+||.+
T Consensus       261 dg~i~~w~mn  270 (404)
T KOG1409|consen  261 DGGIVVWNMN  270 (404)
T ss_pred             CCeEEEEecc
Confidence            9999999987

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.73  E-value=1.3e-07  Score=67.18  Aligned_cols=78  Identities=18%  Similarity=0.219  Sum_probs=60.9

Q ss_pred             eeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859           8 RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      ..-+++.++.|.+++|+.+.++.|..||.|.+|+.....  ..    +.....         .++.++|||+|..+++|+
T Consensus       254 tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~--t~----~~ka~~---------~P~~iaWHp~gai~~V~s  318 (545)
T PF11768_consen  254 TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV--TL----LAKAEF---------IPTLIAWHPDGAIFVVGS  318 (545)
T ss_pred             EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe--ee----eeeecc---------cceEEEEcCCCcEEEEEc
Confidence            345678889999999999999999999999995443221  11    111222         578999999999999999


Q ss_pred             CCCeEEEEeCCCc
Q psy1859          88 SDGYVNIWDGFNK  100 (162)
Q Consensus        88 ~d~~v~~wd~~~~  100 (162)
                      ..|.+.+||+.-.
T Consensus       319 ~qGelQ~FD~ALs  331 (545)
T PF11768_consen  319 EQGELQCFDMALS  331 (545)
T ss_pred             CCceEEEEEeecC
Confidence            9999999998743

>KOG4497|consensus

Probab=98.72  E-value=6.1e-07  Score=59.98  Aligned_cols=89  Identities=12%  Similarity=0.130  Sum_probs=65.1

Q ss_pred             ceEEEEecCCCCEEEEecCC--CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeee
Q psy1859          70 PVNAISFHQEYNTFATGGSD--GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQ  146 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d--~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  146 (162)
                      .+.-++|++|..++++-...  +.+.+||++.-+....+ ....+|... |+|....|+.+.....+++|.......+..
T Consensus       320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v  398 (447)
T KOG4497|consen  320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV  398 (447)
T ss_pred             ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec
Confidence            56689999999888887654  78999999876554444 467788889 999888888888888899999865444433


Q ss_pred             eccCCCceeEEEec
Q psy1859         147 FHRYDTGITSLCFS  160 (162)
Q Consensus       147 ~~~~~~~v~~v~~~  160 (162)
                      - ...-.|..++|.
T Consensus       399 P-~~GF~i~~l~W~  411 (447)
T KOG4497|consen  399 P-KKGFNIQKLQWL  411 (447)
T ss_pred             C-CCCceeeeEEec
Confidence            2 222356666664

>KOG4640|consensus

Probab=98.71  E-value=1.2e-07  Score=67.93  Aligned_cols=91  Identities=22%  Similarity=0.255  Sum_probs=76.5

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeeccccee-EE-EcCCCCEEEEecCCCeEEEEeCCCceeeeee
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGIT-SL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQF  147 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~-~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  147 (162)
                      .+.-+.|+|.-.++|.+..+|.+.+..+. .+.+.+++.++..++ ++ |.|||+.++.|-.||+|++.|+.++..+...
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~  100 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF  100 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence            47889999999999999999999999988 788888886777777 78 9999999999999999999999998876652


Q ss_pred             -ccCCCceeEEEecC
Q psy1859         148 -HRYDTGITSLCFSY  161 (162)
Q Consensus       148 -~~~~~~v~~v~~~p  161 (162)
                       ......|.++-|+|
T Consensus       101 ~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  101 LFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccchheeeccc
Confidence             23445677777753

>KOG4547|consensus

Probab=98.67  E-value=1.7e-06  Score=61.49  Aligned_cols=130  Identities=15%  Similarity=0.126  Sum_probs=95.8

Q ss_pred             eCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEe------cC--------------CCCE
Q psy1859          23 PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF------HQ--------------EYNT   82 (162)
Q Consensus        23 ~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~p--------------~~~~   82 (162)
                      |...+++..+.||.+++|+....+  ....+.-..+..        +..++..|      +|              +...
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~--~~~e~~p~~~~s--------~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~   72 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQ--LQQEFAPIASLS--------GTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSM   72 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCce--eeeeeccchhcc--------CcceeEEEEEEeccchHHHHhHHHHhhccCCceE
Confidence            446789999999999996544332  322222111110        12222222      22              2236


Q ss_pred             EEEecCCCeEEEEeCCCccceeeee--ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEe
Q psy1859          83 FATGGSDGYVNIWDGFNKKRLCQFH--RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF  159 (162)
Q Consensus        83 l~~~~~d~~v~~wd~~~~~~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~  159 (162)
                      ++-|...|.|.+|++..++....+.  +|.+.+.++ ++.+-.-+.+++.|..+..|+...++.++.+..-...+.+++.
T Consensus        73 lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~i  152 (541)
T KOG4547|consen   73 LVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCI  152 (541)
T ss_pred             EEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEE
Confidence            7778899999999999998777765  678889999 9998899999999999999999999999988888888999999


Q ss_pred             cCC
Q psy1859         160 SYD  162 (162)
Q Consensus       160 ~pd  162 (162)
                      +||
T Consensus       153 s~D  155 (541)
T KOG4547|consen  153 SPD  155 (541)
T ss_pred             cCC
Confidence            987

>KOG1912|consensus

Probab=98.63  E-value=5.9e-07  Score=66.14  Aligned_cols=130  Identities=8%  Similarity=0.130  Sum_probs=92.5

Q ss_pred             EEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC------------CEEE
Q psy1859          17 RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY------------NTFA   84 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~------------~~l~   84 (162)
                      .++.|+|.| .++.|+. ..|.+  .|..+  .+.+..+..|..         .|+.+.|.|..            -+|+
T Consensus        19 ~A~Dw~~~G-LiAygsh-slV~V--VDs~s--~q~iqsie~h~s---------~V~~VrWap~~~p~~llS~~~~~lliA   83 (1062)
T KOG1912|consen   19 NAADWSPSG-LIAYGSH-SLVSV--VDSRS--LQLIQSIELHQS---------AVTSVRWAPAPSPRDLLSPSSSQLLIA   83 (1062)
T ss_pred             cccccCccc-eEEEecC-ceEEE--Eehhh--hhhhhccccCcc---------ceeEEEeccCCCchhccCccccceeEE
Confidence            457788876 3455443 45566  66554  455555555543         79999998842            2567


Q ss_pred             EecCCCeEEEEeCCCccceeeeeecccceeEE-EcC---CC-CEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEe
Q psy1859          85 TGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ---EY-NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF  159 (162)
Q Consensus        85 ~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~---~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~  159 (162)
                      ++...|.|.+||...+..+..+..+..++..+ |-+   +. .+|++-.....+.+|+..+|+....+..-.....|+.+
T Consensus        84 saD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~  163 (1062)
T KOG1912|consen   84 SADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRV  163 (1062)
T ss_pred             eccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeee
Confidence            77788999999999998888888888888888 554   55 46667777889999999999988877644444555666


Q ss_pred             cC
Q psy1859         160 SY  161 (162)
Q Consensus       160 ~p  161 (162)
                      .|
T Consensus       164 DP  165 (1062)
T KOG1912|consen  164 DP  165 (1062)
T ss_pred             CC
Confidence            54

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.63  E-value=6.3e-06  Score=57.86  Aligned_cols=97  Identities=12%  Similarity=-0.004  Sum_probs=76.5

Q ss_pred             ccceeceEEEEecCCCCEEEEecCCC-eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCce
Q psy1859          65 IEKIYPVNAISFHQEYNTFATGGSDG-YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKK  142 (162)
Q Consensus        65 ~~~~~~v~~~~~~p~~~~l~~~~~d~-~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~  142 (162)
                      .++...|.-..+.-+++-++.|..|| .+-++|.+.++ ++.+...-+.|.++ .+|+|++++++.....|.+.|+.+++
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            34555677777777777888999998 88999988764 44555556778888 99999999999999999999999987


Q ss_pred             eeeeeccCCCceeEEEecCC
Q psy1859         143 RLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       143 ~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ....=+...+-|+.+.|+|+
T Consensus       435 v~~idkS~~~lItdf~~~~n  454 (668)
T COG4946         435 VRLIDKSEYGLITDFDWHPN  454 (668)
T ss_pred             eeEecccccceeEEEEEcCC
Confidence            54433445667899999986

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.58  E-value=4.5e-05  Score=50.36  Aligned_cols=133  Identities=17%  Similarity=0.095  Sum_probs=85.6

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCc------EEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEE-EEe
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGR------AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF-ATG   86 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~------i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~   86 (162)
                      .....+++.|+|+..++......      =.||.++... ......  ..-.          ....|+|+|+++.| ++-
T Consensus        86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~-~~~~~~--~~~~----------~pNGi~~s~dg~~lyv~d  152 (246)
T PF08450_consen   86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG-KVTVVA--DGLG----------FPNGIAFSPDGKTLYVAD  152 (246)
T ss_dssp             EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS-EEEEEE--EEES----------SEEEEEEETTSSEEEEEE
T ss_pred             CCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC-eEEEEe--cCcc----------cccceEECCcchheeecc
Confidence            34467899999997776544321      3455576652 122221  1111          47899999999755 567


Q ss_pred             cCCCeEEEEeCCCccc-e---eee---eecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEE
Q psy1859          87 GSDGYVNIWDGFNKKR-L---CQF---HRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLC  158 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~~-~---~~~---~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~  158 (162)
                      +..+.|..+++..... +   ..+   ....+..-.+ +..+|++.++....+.|.++|.+ |+.+..+......+++++
T Consensus       153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~  231 (246)
T PF08450_consen  153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCA  231 (246)
T ss_dssp             TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred             cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE
Confidence            7889999999864221 1   122   1112235567 99999988888888999999987 888877776656899999


Q ss_pred             ec
Q psy1859         159 FS  160 (162)
Q Consensus       159 ~~  160 (162)
                      |.
T Consensus       232 fg  233 (246)
T PF08450_consen  232 FG  233 (246)
T ss_dssp             EE
T ss_pred             EE
Confidence            94

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.58  E-value=5.1e-06  Score=64.19  Aligned_cols=155  Identities=15%  Similarity=0.083  Sum_probs=95.4

Q ss_pred             eeeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEe--cCCcc-----------------cceeeeeeeeeeecc----
Q psy1859           6 QRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYL--DTGPE-----------------MQKMKYAFKCHRIKE----   62 (162)
Q Consensus         6 ~~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~--~~~~~-----------------~~~~~~~~~~~~~~~----   62 (162)
                      .+..-.....|.+++||||+..++.++.++++.+..-  ++-..                 .++....|.|.....    
T Consensus       113 ~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~  192 (928)
T PF04762_consen  113 IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQ  192 (928)
T ss_pred             eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhh
Confidence            3444567788999999999999999999998887332  11100                 001111111111110    


Q ss_pred             -----------CcccceeceEEEEecCCCCEEEEecC------CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEE
Q psy1859          63 -----------DGIEKIYPVNAISFHQEYNTFATGGS------DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTF  124 (162)
Q Consensus        63 -----------~~~~~~~~v~~~~~~p~~~~l~~~~~------d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l  124 (162)
                                 ........-..++|-.||.+|++.+.      -..+++|+-+ |.....-....+--..+ |.|.|.++
T Consensus       193 ~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lI  271 (928)
T PF04762_consen  193 LRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLI  271 (928)
T ss_pred             ccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEE
Confidence                       00002335678999999999998764      2578999965 65544443333444456 99999999


Q ss_pred             EEecC---CCeEEEEeCCCceeeeeec----cCCCceeEEEecCC
Q psy1859         125 ATGGS---DGYVNIWDGFNKKRLCQFH----RYDTGITSLCFSYD  162 (162)
Q Consensus       125 ~~~~~---d~~i~iwd~~~~~~~~~~~----~~~~~v~~v~~~pd  162 (162)
                      ++...   ...|.+|.- +|-....+.    .....|..+.|++|
T Consensus       272 A~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~d  315 (928)
T PF04762_consen  272 ASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSD  315 (928)
T ss_pred             EEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCC
Confidence            98864   345667763 554433332    33457899999986

>KOG1240|consensus

Probab=98.57  E-value=5.5e-06  Score=63.90  Aligned_cols=136  Identities=14%  Similarity=0.145  Sum_probs=90.4

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCccccee--------------eeeeee---eeec---------c---
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKM--------------KYAFKC---HRIK---------E---   62 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~--------------~~~~~~---~~~~---------~---   62 (162)
                      ....+.++...+.+..+++++.||.|.+..+|........              +..+..   +...         .   
T Consensus      1097 ~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1097 EGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred             cCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence            3455678888899999999999999999777652100000              000000   0000         0   


Q ss_pred             -------------CcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeee-ecccceeEE-EcC---CCCEE
Q psy1859          63 -------------DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH-RYDTGITSL-FHQ---EYNTF  124 (162)
Q Consensus        63 -------------~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~-~~~~~v~~~-~~~---~~~~l  124 (162)
                                   ....-.+.|++++.+|.++.++.|+..|.+.+||++=+.++..+. .+..++..+ .+|   .....
T Consensus      1177 ~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~ 1256 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVS 1256 (1431)
T ss_pred             EecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceE
Confidence                         111223469999999999999999999999999999887777664 234566666 444   33455


Q ss_pred             EEec--CCCeEEEEeCCCceeeeee
Q psy1859         125 ATGG--SDGYVNIWDGFNKKRLCQF  147 (162)
Q Consensus       125 ~~~~--~d~~i~iwd~~~~~~~~~~  147 (162)
                      ++++  ..+.|.+|++.+|.+..++
T Consensus      1257 vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1257 VSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred             EEecccCCCceeeeecccCcceEEE
Confidence            5444  5788999999988665554

>KOG0280|consensus

Probab=98.56  E-value=1.1e-05  Score=53.17  Aligned_cols=91  Identities=18%  Similarity=0.165  Sum_probs=69.4

Q ss_pred             eEEEEecCCCCEEEEecCCCeEEEEeCCCcc--ceeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCC-ceeee
Q psy1859          71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKK--RLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFN-KKRLC  145 (162)
Q Consensus        71 v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~--~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~-~~~~~  145 (162)
                      ..++.|++.+..++++..+|.+.+-+.....  .++.++.|.-+.... |+. +.+++++|++|+.+.-||+|. ++.+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            5688999999889999999999865555443  344778888888877 765 557899999999999999993 33343


Q ss_pred             e-eccCCCceeEEEecC
Q psy1859         146 Q-FHRYDTGITSLCFSY  161 (162)
Q Consensus       146 ~-~~~~~~~v~~v~~~p  161 (162)
                      . .+.|...|.+|.=+|
T Consensus       204 ~n~kvH~~GV~SI~ss~  220 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSP  220 (339)
T ss_pred             ecceeeecceEEEecCC
Confidence            3 456888888887655

>KOG2066|consensus

Probab=98.56  E-value=2.8e-06  Score=62.69  Aligned_cols=107  Identities=23%  Similarity=0.386  Sum_probs=74.8

Q ss_pred             CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC-----CCEEEEecCCCeEEEEeCC
Q psy1859          24 NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE-----YNTFATGGSDGYVNIWDGF   98 (162)
Q Consensus        24 ~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~l~~~~~d~~v~~wd~~   98 (162)
                      +|.++++|+.||++.|-......  ....+.+.  +          ++.+++++|+     .+.+++|+.-| +.++.-+
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~--~~~~~df~--r----------piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~  146 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDD--EITQYDFK--R----------PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN  146 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCc--cceeEecC--C----------cceeEEeccchhhhhhhheeecCcce-EEEehhh
Confidence            58999999999999884333222  22333322  2          6899999998     36899999888 7676533


Q ss_pred             C-ccc-eeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859          99 N-KKR-LCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        99 ~-~~~-~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      = +.. ...+....++|.++ |.  |.+++.++.+| |++||+.+++.+..++
T Consensus       147 wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~  196 (846)
T KOG2066|consen  147 WLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIP  196 (846)
T ss_pred             hhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccC
Confidence            1 111 12345567899999 96  77899987776 8999998887666554

>KOG1409|consensus

Probab=98.56  E-value=1.2e-06  Score=58.82  Aligned_cols=77  Identities=19%  Similarity=0.344  Sum_probs=63.4

Q ss_pred             cceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccc-eeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCce
Q psy1859          66 EKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR-LCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKK  142 (162)
Q Consensus        66 ~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~-~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~  142 (162)
                      +|.+.+.++.|.|...++.+|..|..+.+||+-..+- ...+.+|...+..+ .-+--+.+++++.||.|.+||.+...
T Consensus       195 ~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  195 GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence            3556899999999999999999999999999976543 34566777778777 66667789999999999999997543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.55  E-value=1.5e-05  Score=53.56  Aligned_cols=140  Identities=14%  Similarity=0.129  Sum_probs=92.1

Q ss_pred             cccEEEEEEeeC-CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC---
Q psy1859          13 KFQTRCIKCFPN-KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS---   88 (162)
Q Consensus        13 ~~~~~~i~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---   88 (162)
                      ......++.+|. ...++.+-.-|+-. +.+|..+  ......+......     |  .----.||++|++|.+.-.   
T Consensus         4 P~RgH~~a~~p~~~~avafaRRPG~~~-~v~D~~~--g~~~~~~~a~~gR-----H--FyGHg~fs~dG~~LytTEnd~~   73 (305)
T PF07433_consen    4 PARGHGVAAHPTRPEAVAFARRPGTFA-LVFDCRT--GQLLQRLWAPPGR-----H--FYGHGVFSPDGRLLYTTENDYE   73 (305)
T ss_pred             CccccceeeCCCCCeEEEEEeCCCcEE-EEEEcCC--CceeeEEcCCCCC-----E--EecCEEEcCCCCEEEEeccccC
Confidence            344456788884 55566666666633 2366655  2222222221111     0  1224568999998887644   


Q ss_pred             --CCeEEEEeCC-CccceeeeeecccceeEE-EcCCCCEEEEecC------------------CCeEEEEeCCCceeeee
Q psy1859          89 --DGYVNIWDGF-NKKRLCQFHRYDTGITSL-FHQEYNTFATGGS------------------DGYVNIWDGFNKKRLCQ  146 (162)
Q Consensus        89 --d~~v~~wd~~-~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~------------------d~~i~iwd~~~~~~~~~  146 (162)
                        .|.|-+||.. ..+.+.++..+.-....+ +.|||+.|+++..                  +..+.+.|..+|+.+.+
T Consensus        74 ~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q  153 (305)
T PF07433_consen   74 TGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ  153 (305)
T ss_pred             CCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee
Confidence              4899999999 557777888777777888 9999988888742                  23567778888887666


Q ss_pred             ec----cCCCceeEEEecCC
Q psy1859         147 FH----RYDTGITSLCFSYD  162 (162)
Q Consensus       147 ~~----~~~~~v~~v~~~pd  162 (162)
                      ..    .|...|..+++.+|
T Consensus       154 ~~Lp~~~~~lSiRHLa~~~~  173 (305)
T PF07433_consen  154 VELPPDLHQLSIRHLAVDGD  173 (305)
T ss_pred             eecCccccccceeeEEecCC
Confidence            33    37778888888765

>KOG4714|consensus

Probab=98.55  E-value=3.9e-07  Score=58.96  Aligned_cols=72  Identities=15%  Similarity=0.172  Sum_probs=54.6

Q ss_pred             EEEEEEeeC-CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCeEE
Q psy1859          16 TRCIKCFPN-KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVN   93 (162)
Q Consensus        16 ~~~i~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v~   93 (162)
                      +.+++-+|. ...+++|+.||.+.+|+++.-.   -+...++.|         ..++..+-|+|.. ..|++++.||.+.
T Consensus       182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~---~p~S~l~ah---------k~~i~eV~FHpk~p~~Lft~sedGslw  249 (319)
T KOG4714|consen  182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVA---MPVSLLKAH---------KAEIWEVHFHPKNPEHLFTCSEDGSLW  249 (319)
T ss_pred             chhhhCCcccccEEEEecCCCeEEEEEccccc---chHHHHHHh---------hhhhhheeccCCCchheeEecCCCcEE
Confidence            677888885 5567788999999998876532   122223344         4479999999986 7899999999999


Q ss_pred             EEeCCC
Q psy1859          94 IWDGFN   99 (162)
Q Consensus        94 ~wd~~~   99 (162)
                      .||..+
T Consensus       250 ~wdas~  255 (319)
T KOG4714|consen  250 HWDAST  255 (319)
T ss_pred             EEcCCC
Confidence            999763

>KOG4190|consensus

Probab=98.54  E-value=4.5e-07  Score=64.65  Aligned_cols=136  Identities=16%  Similarity=0.373  Sum_probs=87.7

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCccc---ceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEM---QKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      .++.++.-.+.+.+++++.|+++++|.+..+...   ....+++..|.         .+|.++.|-.+-+.++++  ||.
T Consensus       737 ~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk---------k~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  737 KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK---------KPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             HhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhcc---------Ccccceeeeeccceeeec--cCc
Confidence            3444555556777999999999999887654311   12444444444         489999998877777665  899


Q ss_pred             EEEEeCCCccceeeee--eccc---ceeEEEcCCCCEEEEe-cCCCeEEEEeCCCceeeeeec-----cCCCceeEEEec
Q psy1859          92 VNIWDGFNKKRLCQFH--RYDT---GITSLFHQEYNTFATG-GSDGYVNIWDGFNKKRLCQFH-----RYDTGITSLCFS  160 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~--~~~~---~v~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~v~~~  160 (162)
                      +.+||..-++++..+.  ...+   .+.++-+-+...++++ +...+++++|.+.+.-...++     +...-+.+++..
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            9999998887665332  1122   3333311144555555 678899999999886554443     333446666654


Q ss_pred             C
Q psy1859         161 Y  161 (162)
Q Consensus       161 p  161 (162)
                      |
T Consensus       886 ~  886 (1034)
T KOG4190|consen  886 D  886 (1034)
T ss_pred             c
Confidence            3

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.53  E-value=4.3e-05  Score=52.81  Aligned_cols=78  Identities=17%  Similarity=0.237  Sum_probs=62.3

Q ss_pred             ceEEEEecCCCCEEEE-ec---------CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCC-EEEEec-CCCeEEEE
Q psy1859          70 PVNAISFHQEYNTFAT-GG---------SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYN-TFATGG-SDGYVNIW  136 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~-~~---------~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~-~d~~i~iw  136 (162)
                      ...-++++|+++.+.. ..         ..+.|.++|..+++.+..+.. ...+..+ ++||++ +|++.. .++.|.+.
T Consensus       249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsVi  327 (352)
T TIGR02658       249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIF  327 (352)
T ss_pred             cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEE
Confidence            4455999999876665 31         225899999999998888864 4678888 999999 888776 57889999


Q ss_pred             eCCCceeeeeec
Q psy1859         137 DGFNKKRLCQFH  148 (162)
Q Consensus       137 d~~~~~~~~~~~  148 (162)
                      |..+++.+..+.
T Consensus       328 D~~t~k~i~~i~  339 (352)
T TIGR02658       328 DAETGKELSSVN  339 (352)
T ss_pred             ECcCCeEEeeec
Confidence            999999888873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.53  E-value=3.1e-05  Score=52.40  Aligned_cols=120  Identities=10%  Similarity=0.008  Sum_probs=79.6

Q ss_pred             EEEEEeeCCCeEEEEcCC-CcEEEEEecCCcccceeeeeeeeeeec----cCcccceeceEEEEecCCCCEEEEec-CCC
Q psy1859          17 RCIKCFPNKQGYVLSSIE-GRAAVEYLDTGPEMQKMKYAFKCHRIK----EDGIEKIYPVNAISFHQEYNTFATGG-SDG   90 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~   90 (162)
                      .-+++++++++++++... |.|.++..+... ..........|...    +....   -+....+.|+++++++.. ..-
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG-~l~~~v~~~~h~g~~p~~rQ~~~---h~H~a~~tP~~~~l~v~DLG~D  167 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADG-SLQPVVQVVKHTGSGPHERQESP---HVHSANFTPDGRYLVVPDLGTD  167 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCC-ccccceeeeecCCCCCCccccCC---ccceeeeCCCCCEEEEeecCCc
Confidence            558899999999888554 788886664432 12222222222211    10111   277889999998888875 346


Q ss_pred             eEEEEeCCCccceeee---eecccceeEE-EcCCCCEEEEec-CCCeEEEEeCCC
Q psy1859          91 YVNIWDGFNKKRLCQF---HRYDTGITSL-FHQEYNTFATGG-SDGYVNIWDGFN  140 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~---~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~iwd~~~  140 (162)
                      .|.+|++..++....-   ...+.....+ |+|++++....+ -+++|.+|....
T Consensus       168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~  222 (346)
T COG2706         168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP  222 (346)
T ss_pred             eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence            7999999987543321   1345567788 999999887776 578999999876

>KOG3617|consensus

Probab=98.52  E-value=3.5e-07  Score=68.05  Aligned_cols=107  Identities=16%  Similarity=0.238  Sum_probs=82.9

Q ss_pred             EEEEeeCCCeEEEEcC----CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          18 CIKCFPNKQGYVLSSI----EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        18 ~i~~~~~~~~l~~~~~----~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      -++|+|...+|++++.    .|.|.|+ .|...  +..-.+.+-            .++++.|+|..-.|+.|-.-|.+.
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIf-adtGE--Pqr~Vt~P~------------hatSLCWHpe~~vLa~gwe~g~~~   84 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIF-ADTGE--PQRDVTYPV------------HATSLCWHPEEFVLAQGWEMGVSD   84 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEE-ecCCC--CCcccccce------------ehhhhccChHHHHHhhccccceeE
Confidence            3669999999988843    4778874 34333  222222222            367899999988899999999999


Q ss_pred             EEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCC
Q psy1859          94 IWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGF  139 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~  139 (162)
                      +|...+.+.......|..++..+ ||++|..++++..-|.+.+|...
T Consensus        85 v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   85 VQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             EEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            99988766555556788899999 99999999999999999999875

>KOG2695|consensus

Probab=98.52  E-value=2.3e-07  Score=62.24  Aligned_cols=82  Identities=18%  Similarity=0.182  Sum_probs=66.8

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCc-----cceeeeeecccceeEE--EcCCCCEEEEecCCCeEEEEeCCCce
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNK-----KRLCQFHRYDTGITSL--FHQEYNTFATGGSDGYVNIWDGFNKK  142 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~-----~~~~~~~~~~~~v~~~--~~~~~~~l~~~~~d~~i~iwd~~~~~  142 (162)
                      .|.++.|+..++++..|..+|.|..+|++.+     .+...+ -|.+.++++  ..-++++|++.+-+|+|++||+|--+
T Consensus       254 DVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K  332 (425)
T KOG2695|consen  254 DVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK  332 (425)
T ss_pred             hHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhh
Confidence            5889999988999999999999999999865     223333 478889988  44378899999999999999998766


Q ss_pred             e---eeeeccCCC
Q psy1859         143 R---LCQFHRYDT  152 (162)
Q Consensus       143 ~---~~~~~~~~~  152 (162)
                      +   +.++.+|-.
T Consensus       333 ~~~~V~qYeGHvN  345 (425)
T KOG2695|consen  333 CKKSVMQYEGHVN  345 (425)
T ss_pred             cccceeeeecccc
Confidence            5   888877743

>KOG0309|consensus

Probab=98.49  E-value=8.2e-07  Score=65.15  Aligned_cols=137  Identities=15%  Similarity=0.325  Sum_probs=96.2

Q ss_pred             ccEEEEEEeeC--CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCC
Q psy1859          14 FQTRCIKCFPN--KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDG   90 (162)
Q Consensus        14 ~~~~~i~~~~~--~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~   90 (162)
                      ..+..+.|+|.  ..+-++........+|.+...+ .....+.+-+         |..+++.+-|+|+. ..+++++.|.
T Consensus        68 w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss-~~aIef~lhg---------hsraitd~n~~~q~pdVlatcsvdt  137 (1081)
T KOG0309|consen   68 WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS-SNAIEFVLHG---------HSRAITDINFNPQHPDVLATCSVDT  137 (1081)
T ss_pred             chhcceecccCCCCceeEEecCcchhhhhhhhcCC-ccceEEEEec---------CccceeccccCCCCCcceeeccccc
Confidence            34455677764  3445555556666677665443 1223333333         34489999999987 6889999999


Q ss_pred             eEEEEeCCCc-cceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc-eeeeeeccCCCceeEEEec
Q psy1859          91 YVNIWDGFNK-KRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK-KRLCQFHRYDTGITSLCFS  160 (162)
Q Consensus        91 ~v~~wd~~~~-~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~  160 (162)
                      .+..||+++. .++..+.........+ |+.....+.+.+....|.+||++.| .++..+++|...|+.++|.
T Consensus       138 ~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fn  210 (1081)
T KOG0309|consen  138 YVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFN  210 (1081)
T ss_pred             cceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHh
Confidence            9999999985 5566666667777788 8885555666667788999999866 4677778887778777664

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.46  E-value=1.8e-05  Score=62.21  Aligned_cols=123  Identities=10%  Similarity=0.017  Sum_probs=78.9

Q ss_pred             EEEEEeeCCCeEE-EEcCCCcEEEEEecCCcccceeeeeeeeee-----eccC----c---ccceeceEEEEecCCCCEE
Q psy1859          17 RCIKCFPNKQGYV-LSSIEGRAAVEYLDTGPEMQKMKYAFKCHR-----IKED----G---IEKIYPVNAISFHQEYNTF   83 (162)
Q Consensus        17 ~~i~~~~~~~~l~-~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~-----~~~~----~---~~~~~~v~~~~~~p~~~~l   83 (162)
                      ..|+++|+++.++ +-+.++.|++|+.+...  .....  .+..     ....    +   ........+++++++|.++
T Consensus       743 ~GIavspdG~~LYVADs~n~~Irv~D~~tg~--~~~~~--gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LY  818 (1057)
T PLN02919        743 SGISLSPDLKELYIADSESSSIRALDLKTGG--SRLLA--GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIY  818 (1057)
T ss_pred             cEEEEeCCCCEEEEEECCCCeEEEEECCCCc--EEEEE--ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEE
Confidence            4589999988554 44666888885544321  11110  0000     0000    0   0011134689999999999


Q ss_pred             EEecCCCeEEEEeCCCccceeeee-------------ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCcee
Q psy1859          84 ATGGSDGYVNIWDGFNKKRLCQFH-------------RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKR  143 (162)
Q Consensus        84 ~~~~~d~~v~~wd~~~~~~~~~~~-------------~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~  143 (162)
                      ++-..++.|++||..++.......             ..-.....+ ++++|+++++-+.++.|++||+.+++.
T Consensus       819 VADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        819 VADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            999999999999998765432211             011245677 999999888888999999999988764

>KOG4640|consensus

Probab=98.45  E-value=1.5e-06  Score=62.48  Aligned_cols=93  Identities=17%  Similarity=0.229  Sum_probs=71.3

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceE-EEEecCCCCEEEEecCCC
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN-AISFHQEYNTFATGGSDG   90 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~~~~~d~   90 (162)
                      +...+.-+.|+|.-..+|+++.+|.+.++.++     ...+.++..+..         .++ +++|.|+|++++.|-.||
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-----~qRlwtip~p~~---------~v~~sL~W~~DGkllaVg~kdG   84 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-----WQRLWTIPIPGE---------NVTASLCWRPDGKLLAVGFKDG   84 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec-----cceeEeccCCCC---------ccceeeeecCCCCEEEEEecCC
Confidence            44566778999999999999999999987666     345666665544         244 999999999999999999


Q ss_pred             eEEEEeCCCccceeeee-ecccceeEE-Ec
Q psy1859          91 YVNIWDGFNKKRLCQFH-RYDTGITSL-FH  118 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~-~~~~~v~~~-~~  118 (162)
                      +|++-|+.++..+.... .....+..+ |+
T Consensus        85 ~I~L~Dve~~~~l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   85 TIRLHDVEKGGRLVSFLFSVETDISKGIWD  114 (665)
T ss_pred             eEEEEEccCCCceeccccccccchheeecc
Confidence            99999999987665521 234556666 65

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.43  E-value=2.4e-05  Score=60.57  Aligned_cols=73  Identities=10%  Similarity=0.087  Sum_probs=52.2

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      ..+..+.+.++...++.+..+|.|.+...+...  .......-+.-.        ..|.+++||||+.+++..+.++.+.
T Consensus        76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~--~~~~~E~VG~vd--------~GI~a~~WSPD~Ella~vT~~~~l~  145 (928)
T PF04762_consen   76 DKIVSFQYLADSESLCIALASGDIILVREDPDP--DEDEIEIVGSVD--------SGILAASWSPDEELLALVTGEGNLL  145 (928)
T ss_pred             CcEEEEEeccCCCcEEEEECCceEEEEEccCCC--CCceeEEEEEEc--------CcEEEEEECCCcCEEEEEeCCCEEE
Confidence            467778888999999999999999996444322  112222222221        2699999999999999998888887


Q ss_pred             EEe
Q psy1859          94 IWD   96 (162)
Q Consensus        94 ~wd   96 (162)
                      +-+
T Consensus       146 ~mt  148 (928)
T PF04762_consen  146 LMT  148 (928)
T ss_pred             EEe
Confidence            653

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.41  E-value=3.6e-05  Score=53.19  Aligned_cols=99  Identities=12%  Similarity=0.026  Sum_probs=69.7

Q ss_pred             CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe-c---------CCCeEEEEeCCCcccee
Q psy1859          35 GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG-G---------SDGYVNIWDGFNKKRLC  104 (162)
Q Consensus        35 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~---------~d~~v~~wd~~~~~~~~  104 (162)
                      +++.+  +|..+  .+.+-.+..-..          -..+ ++|+++.+.++ +         .+..|.+||..+.+.+.
T Consensus        27 ~~v~V--iD~~~--~~v~g~i~~G~~----------P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~   91 (352)
T TIGR02658        27 TQVYT--IDGEA--GRVLGMTDGGFL----------PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA   91 (352)
T ss_pred             ceEEE--EECCC--CEEEEEEEccCC----------Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe
Confidence            77888  66655  444433332221          2334 89999766655 4         57999999999999888


Q ss_pred             eeeeccc-------ceeEE-EcCCCCEEEEec-C-CCeEEEEeCCCceeeeeec
Q psy1859         105 QFHRYDT-------GITSL-FHQEYNTFATGG-S-DGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus       105 ~~~~~~~-------~v~~~-~~~~~~~l~~~~-~-d~~i~iwd~~~~~~~~~~~  148 (162)
                      ++.....       ....+ ++|||+++++.. . +..+.+.|+.+++.+..+.
T Consensus        92 ~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~  145 (352)
T TIGR02658        92 DIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD  145 (352)
T ss_pred             EEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEe
Confidence            7764222       22245 999999999887 3 6899999999998777664

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2314|consensus

Probab=98.39  E-value=7.7e-06  Score=58.32  Aligned_cols=118  Identities=11%  Similarity=0.027  Sum_probs=78.9

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCC---CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe-
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIE---GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG-   86 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-   86 (162)
                      .++..+-..+|-|.|+.+++-+..   .++.+|.++........+..+..  .         ..+.+.|+|.|+.++.+ 
T Consensus       443 elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~---------~~N~vfwsPkG~fvvva~  511 (698)
T KOG2314|consen  443 ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--K---------FANTVFWSPKGRFVVVAA  511 (698)
T ss_pred             ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--c---------ccceEEEcCCCcEEEEEE
Confidence            456677778899999888765433   56778766644322334433333  1         47899999999988765 


Q ss_pred             --cCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecC------CCeEEEEeCC
Q psy1859          87 --GSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS------DGYVNIWDGF  139 (162)
Q Consensus        87 --~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~------d~~i~iwd~~  139 (162)
                        +..|.+..+|+.-......-.......+.+ |.|.|+|++|++.      |.--++|+++
T Consensus       512 l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  512 LVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             ecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence              457899999987533322222223445677 9999999999974      4456677764

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.36  E-value=0.00011  Score=57.99  Aligned_cols=123  Identities=8%  Similarity=0.016  Sum_probs=74.5

Q ss_pred             EEEEEee-CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeee--eccCc----ccceeceEEEEecCCCC-EEEEecC
Q psy1859          17 RCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR--IKEDG----IEKIYPVNAISFHQEYN-TFATGGS   88 (162)
Q Consensus        17 ~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~v~~~~~~p~~~-~l~~~~~   88 (162)
                      ..++++| ++..+++.+.++.|.+|  +...+..   ..+.+..  ....+    ...-.....|+++|++. ++++-+.
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~--d~~~g~v---~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~  760 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEY--NISDGVT---RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE  760 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEE--ECCCCeE---EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC
Confidence            4689999 45556666667777774  4433111   1111110  00000    00112466899999986 6666677


Q ss_pred             CCeEEEEeCCCccceeee-------------eec--------ccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceee
Q psy1859          89 DGYVNIWDGFNKKRLCQF-------------HRY--------DTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRL  144 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~-------------~~~--------~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~  144 (162)
                      ++.|++||+.++......             ...        -.....+ ++++|.++++-..++.|++||..++...
T Consensus       761 n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~  838 (1057)
T PLN02919        761 SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT  838 (1057)
T ss_pred             CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence            899999999875421100             000        0123467 8999998888889999999999877644

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.24  E-value=8e-06  Score=54.52  Aligned_cols=126  Identities=19%  Similarity=0.202  Sum_probs=80.9

Q ss_pred             ccEEEEEEeeCC--CeEEEEcCCCcEEEEEecCCccc---------------ceeee---eee------------eeeec
Q psy1859          14 FQTRCIKCFPNK--QGYVLSSIEGRAAVEYLDTGPEM---------------QKMKY---AFK------------CHRIK   61 (162)
Q Consensus        14 ~~~~~i~~~~~~--~~l~~~~~~g~i~i~~~~~~~~~---------------~~~~~---~~~------------~~~~~   61 (162)
                      ..+..|.|..++  ..++..+.|.++++|.+-...-+               ...+.   .+.            ..+..
T Consensus        86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r  165 (460)
T COG5170          86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR  165 (460)
T ss_pred             HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence            345668887653  45778899999999886433100               00000   000            00000


Q ss_pred             cCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCcccee---eeeec-----ccceeEE-EcCC-CCEEEEecCCC
Q psy1859          62 EDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC---QFHRY-----DTGITSL-FHQE-YNTFATGGSDG  131 (162)
Q Consensus        62 ~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~---~~~~~-----~~~v~~~-~~~~-~~~l~~~~~d~  131 (162)
                      -....|+..+.++.|+.+...++++ .|-.|.+|++.......   .++.+     ...|++. |+|. -..+..++..|
T Consensus       166 vyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG  244 (460)
T COG5170         166 VYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKG  244 (460)
T ss_pred             eccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCC
Confidence            1345688899999999988877766 57889999987543222   22233     2356777 9994 45677888999


Q ss_pred             eEEEEeCCC
Q psy1859         132 YVNIWDGFN  140 (162)
Q Consensus       132 ~i~iwd~~~  140 (162)
                      .|++.|+|.
T Consensus       245 ~Ikl~DlRq  253 (460)
T COG5170         245 EIKLNDLRQ  253 (460)
T ss_pred             cEEehhhhh
Confidence            999999984

>smart00320 WD40 WD40 repeats

Probab=98.18  E-value=8.4e-06  Score=36.62  Aligned_cols=37  Identities=24%  Similarity=0.478  Sum_probs=31.4

Q ss_pred             cceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEe
Q psy1859         101 KRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWD  137 (162)
Q Consensus       101 ~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd  137 (162)
                      +++..+..+...+.++ |++++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3455566778889999 999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1645|consensus

Probab=98.17  E-value=8.3e-06  Score=55.96  Aligned_cols=76  Identities=13%  Similarity=0.127  Sum_probs=62.8

Q ss_pred             cceeceEEEEecCCCC-EEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCC-EEEEecCCCeEEEEeCCCce
Q psy1859          66 EKIYPVNAISFHQEYN-TFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYN-TFATGGSDGYVNIWDGFNKK  142 (162)
Q Consensus        66 ~~~~~v~~~~~~p~~~-~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~iwd~~~~~  142 (162)
                      .+...|.+++|+|..+ ++..++.+..|.+.|+++...+..+..+ ..+.++ |..|.. ++..|...|.|.|||++..+
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            3555899999999986 7888999999999999998888777766 667777 887554 67777789999999998653

>KOG1275|consensus

Probab=98.16  E-value=4e-05  Score=57.82  Aligned_cols=125  Identities=18%  Similarity=0.173  Sum_probs=83.4

Q ss_pred             EeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC---------CCe
Q psy1859          21 CFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS---------DGY   91 (162)
Q Consensus        21 ~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---------d~~   91 (162)
                      ...+++++.+|...|+|.+  .|+.+  .+.+.++.+|..         .+.+++  -.|++|++|+.         |..
T Consensus       183 mR~Nnr~lf~G~t~G~V~L--rD~~s--~~~iht~~aHs~---------siSDfD--v~GNlLitCG~S~R~~~l~~D~F  247 (1118)
T KOG1275|consen  183 MRYNNRNLFCGDTRGTVFL--RDPNS--FETIHTFDAHSG---------SISDFD--VQGNLLITCGYSMRRYNLAMDPF  247 (1118)
T ss_pred             EEecCcEEEeecccceEEe--ecCCc--Cceeeeeecccc---------ceeeee--ccCCeEEEeecccccccccccch
Confidence            4456789999999999999  67766  677778787765         566654  46889999875         567


Q ss_pred             EEEEeCCCccceeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeC---CCce-eeeeeccCCCceeEEEecC
Q psy1859          92 VNIWDGFNKKRLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDG---FNKK-RLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~---~~~~-~~~~~~~~~~~v~~v~~~p  161 (162)
                      |++||++..+.+.-+.-+.++ .-+ |+| -...+++++..|...+.|.   .+.. .+..+....+.+..+++++
T Consensus       248 vkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSs  322 (1118)
T KOG1275|consen  248 VKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISS  322 (1118)
T ss_pred             hhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecC
Confidence            899999987665544433332 223 777 3456788888888888883   2221 1222233344566666665

>KOG3621|consensus

Probab=98.14  E-value=5.1e-05  Score=55.61  Aligned_cols=109  Identities=15%  Similarity=0.044  Sum_probs=78.1

Q ss_pred             EEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCC
Q psy1859          20 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN   99 (162)
Q Consensus        20 ~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~   99 (162)
                      ++...+++++.|+..|.++++.-....  . .++...+..         ..+..+..|++..++++|+..|.|.++.+..
T Consensus        40 c~dst~~~l~~GsS~G~lyl~~R~~~~--~-~~~~~~~~~---------~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~  107 (726)
T KOG3621|consen   40 CVDATEEYLAMGSSAGSVYLYNRHTGE--M-RKLKNEGAT---------GITCVRSVSSVEYLVAAGTASGRVSVFQLNK  107 (726)
T ss_pred             EeecCCceEEEecccceEEEEecCchh--h-hcccccCcc---------ceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence            455678999999999999994433221  1 111211111         1466677799889999999999999998887


Q ss_pred             cccee---e--e-eecccceeEE-EcCCCCEEEEecCCCeEEEEeCCC
Q psy1859         100 KKRLC---Q--F-HRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFN  140 (162)
Q Consensus       100 ~~~~~---~--~-~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~  140 (162)
                      +.+-.   .  . +.|...|+++ |++++..+++|...|+|..-.+..
T Consensus       108 ~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  108 ELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            43211   1  1 1356789999 999999999999999998887765

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.12  E-value=0.00027  Score=50.61  Aligned_cols=123  Identities=14%  Similarity=0.156  Sum_probs=66.7

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      .....++++|+++++++ ..+|...|+.  ...  .+....  +            ......|.+ ...+++-..+..|.
T Consensus        33 ~~p~~ls~npngr~v~V-~g~geY~iyt--~~~--~r~k~~--G------------~g~~~vw~~-~n~yAv~~~~~~I~   92 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLV-CGDGEYEIYT--ALA--WRNKAF--G------------SGLSFVWSS-RNRYAVLESSSTIK   92 (443)
T ss_dssp             S--SEEEE-TTSSEEEE-EETTEEEEEE--TTT--TEEEEE--E------------E-SEEEE-T-SSEEEEE-TTS-EE
T ss_pred             cCCeeEEECCCCCEEEE-EcCCEEEEEE--ccC--Cccccc--C------------ceeEEEEec-CccEEEEECCCeEE
Confidence            34567999999998888 5667777754  211  111111  1            355788888 44577777788898


Q ss_pred             EEeCCCccceeeeeecccceeEEEcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          94 IWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ++.--+.+....+... ..+..+|.  |.+|...+.+ .|.+||..+++.++++...  +|..|.|++|
T Consensus        93 I~kn~~~~~~k~i~~~-~~~~~If~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~  155 (443)
T PF04053_consen   93 IYKNFKNEVVKSIKLP-FSVEKIFG--GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDD  155 (443)
T ss_dssp             EEETTEE-TT-----S-S-EEEEE---SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TT
T ss_pred             EEEcCccccceEEcCC-cccceEEc--CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECC
Confidence            8633334343344321 22444444  7777777555 8999999999988888633  3888899875

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.12  E-value=3.2e-05  Score=54.94  Aligned_cols=118  Identities=10%  Similarity=0.052  Sum_probs=71.2

Q ss_pred             ccccEEEEEEeeCCCeEEEE-cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe-cCC
Q psy1859          12 LKFQTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG-GSD   89 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d   89 (162)
                      ..++...-+|+|||+.++.+ ..+|...||.+|........   +.....         .-..-.|+|+|+.++-. +..
T Consensus       236 ~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt~~~g---------i~~~Ps~spdG~~ivf~Sdr~  303 (425)
T COG0823         236 FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR---LTNGFG---------INTSPSWSPDGSKIVFTSDRG  303 (425)
T ss_pred             cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee---cccCCc---------cccCccCCCCCCEEEEEeCCC
Confidence            45555667899999887755 66788888888876533222   111111         12367799999776654 445


Q ss_pred             Ce--EEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecC-CCe--EEEEeCCCce
Q psy1859          90 GY--VNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS-DGY--VNIWDGFNKK  142 (162)
Q Consensus        90 ~~--v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~--i~iwd~~~~~  142 (162)
                      |.  |.+.+...+.. ..+......-..- |+|||++++..+. +|.  |.+.|+.++.
T Consensus       304 G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         304 GRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            54  55556554443 3333322222244 9999999888764 343  6666665554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.10  E-value=9.3e-05  Score=52.42  Aligned_cols=112  Identities=18%  Similarity=0.297  Sum_probs=76.5

Q ss_pred             cccccEEEEEEeeCCCeEEEEcC--CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSI--EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~--~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      .++++|...+|.|.++.|++.+.  ...+.+  ++...   ...+.+...           .-..+.|+|.+++++.++.
T Consensus       272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~--~~lr~---Nl~~~~Pe~-----------~rNT~~fsp~~r~il~agF  335 (561)
T COG5354         272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSV--FDLRG---NLRFYFPEQ-----------KRNTIFFSPHERYILFAGF  335 (561)
T ss_pred             cccccceeeeecccCCceeEEecccccceee--ccccc---ceEEecCCc-----------ccccccccCcccEEEEecC
Confidence            56889999999999888877654  445555  55433   233332222           2346789999988888765


Q ss_pred             C---CeEEEEeCCCcccee-eeeecccceeEE-EcCCCCEEEEec------CCCeEEEEeCCC
Q psy1859          89 D---GYVNIWDGFNKKRLC-QFHRYDTGITSL-FHQEYNTFATGG------SDGYVNIWDGFN  140 (162)
Q Consensus        89 d---~~v~~wd~~~~~~~~-~~~~~~~~v~~~-~~~~~~~l~~~~------~d~~i~iwd~~~  140 (162)
                      |   |.+-+||......+. .+.+  ....-+ |+|+++++.+..      .|..++|||+..
T Consensus       336 ~nl~gni~i~~~~~rf~~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g  396 (561)
T COG5354         336 DNLQGNIEIFDPAGRFKVAGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG  396 (561)
T ss_pred             CccccceEEeccCCceEEEEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence            5   789999987654433 4432  223344 999999988874      478899999853

>KOG2066|consensus

Probab=98.09  E-value=0.0001  Score=54.91  Aligned_cols=113  Identities=20%  Similarity=0.265  Sum_probs=80.0

Q ss_pred             CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCcccee
Q psy1859          25 KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC  104 (162)
Q Consensus        25 ~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~  104 (162)
                      +++|+.|+.+|.+++.+.+...      .+...|..          .     .-+|.++++|+.||.|.+-.+.+.+...
T Consensus        49 ~~~~~~GtH~g~v~~~~~~~~~------~~~~~~s~----------~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQGNP------KTNFDHSS----------S-----ILEGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             cceeeeccccceEEEEecCCcc------cccccccc----------c-----ccCCceEEEecCCCcEEEeeccCCccce
Confidence            6789999999999995544321      11122221          1     5678999999999999999998887776


Q ss_pred             eeeecccceeEE-EcCC-----CCEEEEecCCCeEEEEeCC---CceeeeeeccCCCceeEEEecC
Q psy1859         105 QFHRYDTGITSL-FHQE-----YNTFATGGSDGYVNIWDGF---NKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus       105 ~~~~~~~~v~~~-~~~~-----~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      .+. ...++.++ ++|+     .+.+++|+..| +.++.-+   ....+ .+....++|.++.|..
T Consensus       108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g  170 (846)
T KOG2066|consen  108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRG  170 (846)
T ss_pred             eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecC
Confidence            664 45678888 8886     56889998888 7666532   12222 3555677899998864

>KOG2079|consensus

Probab=98.08  E-value=2.6e-05  Score=59.65  Aligned_cols=97  Identities=19%  Similarity=0.255  Sum_probs=69.8

Q ss_pred             CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccce
Q psy1859          24 NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRL  103 (162)
Q Consensus        24 ~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~  103 (162)
                      .+..++.|++.|.+-..++..+   ....     |...    .-.++|++++|+.+|.+++.|-.+|.|.+||...++.+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n---L~~~-----~~ne----~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l  165 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN---LGPL-----HQNE----RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKIL  165 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc---cchh-----hcCC----ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcce
Confidence            3556778888888777333221   1111     1111    12348999999999999999999999999999999999


Q ss_pred             eeeeecccceeEE----EcCCCCEEEEecCCCe
Q psy1859         104 CQFHRYDTGITSL----FHQEYNTFATGGSDGY  132 (162)
Q Consensus       104 ~~~~~~~~~v~~~----~~~~~~~l~~~~~d~~  132 (162)
                      +.+..+..+.+.+    +..++..+.++...|.
T Consensus       166 ~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  166 KVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             eeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence            9888877776665    4445667888887775

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.08  E-value=6.5e-05  Score=53.40  Aligned_cols=132  Identities=17%  Similarity=0.164  Sum_probs=72.8

Q ss_pred             EEEEEeeCCCeEEEEcCC--CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEE-EecCCCe--
Q psy1859          17 RCIKCFPNKQGYVLSSIE--GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA-TGGSDGY--   91 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~~--g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~~--   91 (162)
                      ..-+|+|++..++..+..  +.-++|.++...+....+..+.++            -...+|+|+|+.++ +...|+.  
T Consensus       196 ~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~------------~~~P~fspDG~~l~f~~~rdg~~~  263 (425)
T COG0823         196 LTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN------------NGAPAFSPDGSKLAFSSSRDGSPD  263 (425)
T ss_pred             eccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc------------cCCccCCCCCCEEEEEECCCCCcc
Confidence            445688888776554222  212344455555445555554444            34678999996665 4456665  


Q ss_pred             EEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEec-CCC--eEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          92 VNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGG-SDG--YVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |++.|+..+. ...+....+.-..- |+|||++++..+ ..|  .|.++|...+.. ..+......-....|+||
T Consensus       264 iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~Spd  336 (425)
T COG0823         264 IYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPD  336 (425)
T ss_pred             EEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCC
Confidence            5556776655 33344333333344 999999877765 334  566777765543 333222222224555554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.03  E-value=4.9e-05  Score=53.76  Aligned_cols=132  Identities=14%  Similarity=0.082  Sum_probs=86.0

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC-
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG-   90 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~-   90 (162)
                      -..++..+++||.|.+|++.... .|.+|  ....  ......+. |.          .|..+.|+|.+++|.+=+..+ 
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~--~g~~--~~~l~~~~-~~----------~V~~~~fSP~~kYL~tw~~~pi   94 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAA-GVECW--GGPS--KAKLVRFR-HP----------DVKYLDFSPNEKYLVTWSREPI   94 (561)
T ss_pred             cCcchhheeecCcchheehhhcc-ceEEc--cccc--hhheeeee-cC----------CceecccCcccceeeeeccCCc
Confidence            34566778999999998886554 46664  3322  11222222 32          499999999999998865433 


Q ss_pred             --------------eEEEEeCCCccceeeeeecccc--ee-EE-EcCCCCEEEEecCCCeEEEEeCCCceee-eeec-cC
Q psy1859          91 --------------YVNIWDGFNKKRLCQFHRYDTG--IT-SL-FHQEYNTFATGGSDGYVNIWDGFNKKRL-CQFH-RY  150 (162)
Q Consensus        91 --------------~v~~wd~~~~~~~~~~~~~~~~--v~-~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~-~~  150 (162)
                                    .+.+||..++..+..+.....+  .. -+ |+-+..|++-. -...++|+++ ++... ..+. ..
T Consensus        95 ~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr  172 (561)
T COG5354          95 IEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR  172 (561)
T ss_pred             cChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc
Confidence                          4999999999888888765544  44 34 88887777666 4457999997 44321 1111 11


Q ss_pred             CCceeEEEecC
Q psy1859         151 DTGITSLCFSY  161 (162)
Q Consensus       151 ~~~v~~v~~~p  161 (162)
                      ...|....|+|
T Consensus       173 ~~gi~dFsisP  183 (561)
T COG5354         173 PVGILDFSISP  183 (561)
T ss_pred             ccceeeEEecC
Confidence            34677777776

>KOG0309|consensus

Probab=98.02  E-value=2.7e-05  Score=57.63  Aligned_cols=115  Identities=15%  Similarity=0.282  Sum_probs=82.7

Q ss_pred             cEEEEEEeeCC-CeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          15 QTRCIKCFPNK-QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        15 ~~~~i~~~~~~-~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      .++.+.|+|+. ..+++++.|-.+..|+.....   ...+....-..         +...++|+-...-+++.+....++
T Consensus       116 aitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~---~p~ys~~~w~s---------~asqVkwnyk~p~vlasshg~~i~  183 (1081)
T KOG0309|consen  116 AITDINFNPQHPDVLATCSVDTYVHAWDMRSPH---RPFYSTSSWRS---------AASQVKWNYKDPNVLASSHGNDIF  183 (1081)
T ss_pred             ceeccccCCCCCcceeeccccccceeeeccCCC---cceeeeecccc---------cCceeeecccCcchhhhccCCceE
Confidence            34556688864 467888999999996654322   23333222222         477899988776666777788899


Q ss_pred             EEeCCCc-cceeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCc
Q psy1859          94 IWDGFNK-KRLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNK  141 (162)
Q Consensus        94 ~wd~~~~-~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~  141 (162)
                      +||++.+ .++..++.|...+..+ |.. ....+.+.+.|++|+.||....
T Consensus       184 vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  184 VWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             EEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            9999986 5677888877778777 665 4456888999999999998644

>KOG4649|consensus

Probab=98.01  E-value=0.00078  Score=44.34  Aligned_cols=113  Identities=12%  Similarity=0.042  Sum_probs=77.6

Q ss_pred             EEeeC-CCeEEEEcCCCcEEEEEecCCcccceeeeee-eeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeC
Q psy1859          20 KCFPN-KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAF-KCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDG   97 (162)
Q Consensus        20 ~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~   97 (162)
                      ...++ ..+++.|+..+.+.-  .|..+  ....+.. -+.+           +.+-+.- -|.+++.|...|.+++.+.
T Consensus        17 VV~~dskT~v~igSHs~~~~a--vd~~s--G~~~We~ilg~R-----------iE~sa~v-vgdfVV~GCy~g~lYfl~~   80 (354)
T KOG4649|consen   17 VVCNDSKTLVVIGSHSGIVIA--VDPQS--GNLIWEAILGVR-----------IECSAIV-VGDFVVLGCYSGGLYFLCV   80 (354)
T ss_pred             EEecCCceEEEEecCCceEEE--ecCCC--CcEEeehhhCce-----------eeeeeEE-ECCEEEEEEccCcEEEEEe
Confidence            34444 456677788887776  67666  3333321 1122           2221111 2677999999999999999


Q ss_pred             CCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859          98 FNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        98 ~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      ++|..+..+...+..-... ..+++.++..++.|+..+..|.++..++...+
T Consensus        81 ~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   81 KTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             cchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence            9998888776543322233 78899999999999999999999988877654

>smart00320 WD40 WD40 repeats

Probab=97.99  E-value=1.9e-05  Score=35.36  Aligned_cols=28  Identities=29%  Similarity=0.706  Sum_probs=25.8

Q ss_pred             eceEEEEecCCCCEEEEecCCCeEEEEe
Q psy1859          69 YPVNAISFHQEYNTFATGGSDGYVNIWD   96 (162)
Q Consensus        69 ~~v~~~~~~p~~~~l~~~~~d~~v~~wd   96 (162)
                      ..|.++.|++.+..+++++.|+.+++|+
T Consensus        13 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       13 GPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             CceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3799999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.95  E-value=5.3e-05  Score=36.43  Aligned_cols=33  Identities=27%  Similarity=0.404  Sum_probs=29.4

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCccce
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRL  103 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~  103 (162)
                      .|..++|+|...+++.++.+|.|.++.+ +++.+
T Consensus        13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            6999999999999999999999999998 55543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.94  E-value=0.0019  Score=42.80  Aligned_cols=132  Identities=11%  Similarity=0.086  Sum_probs=76.0

Q ss_pred             EEEeeCCCeEEEEcCCCcEEEEEecCCcccceeee--eeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEe
Q psy1859          19 IKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKY--AFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWD   96 (162)
Q Consensus        19 i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd   96 (162)
                      ++.+++|+.||. ..|..|.|..-...-  ...+.  .....+.        ..-+-++||||+.+||.+...|.|+++|
T Consensus         3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf--~si~~kcqVpkD~~--------PQWRkl~WSpD~tlLa~a~S~G~i~vfd   71 (282)
T PF15492_consen    3 LALSSDGKLLAI-LQDQCIEIRSAKDDF--SSIIGKCQVPKDPN--------PQWRKLAWSPDCTLLAYAESTGTIRVFD   71 (282)
T ss_pred             eeecCCCcEEEE-EeccEEEEEeccCCc--hheeEEEecCCCCC--------chheEEEECCCCcEEEEEcCCCeEEEEe
Confidence            456677876666 566777763322111  11111  1111111        1467899999999999999999999999


Q ss_pred             CCCccceeeeee-------cccceeEE-EcCC------CCEEEEecCCCeEEEEeCCC-----ceeeeeec---cCCCce
Q psy1859          97 GFNKKRLCQFHR-------YDTGITSL-FHQE------YNTFATGGSDGYVNIWDGFN-----KKRLCQFH---RYDTGI  154 (162)
Q Consensus        97 ~~~~~~~~~~~~-------~~~~v~~~-~~~~------~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~---~~~~~v  154 (162)
                      +.. ..+..+..       ....|..+ |-+.      ...|++-..+|.++=|-+-.     .+..+.+.   .+...|
T Consensus        72 l~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi  150 (282)
T PF15492_consen   72 LMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGI  150 (282)
T ss_pred             ccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCce
Confidence            975 33333322       12344555 4331      12456666777777665422     12333332   246688


Q ss_pred             eEEEecCC
Q psy1859         155 TSLCFSYD  162 (162)
Q Consensus       155 ~~v~~~pd  162 (162)
                      .++.++|.
T Consensus       151 ~~~vy~p~  158 (282)
T PF15492_consen  151 NSAVYHPK  158 (282)
T ss_pred             eEEEEcCC
Confidence            99988874

>KOG1832|consensus

Probab=97.93  E-value=6.4e-06  Score=62.03  Aligned_cols=130  Identities=16%  Similarity=0.183  Sum_probs=86.6

Q ss_pred             EEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC--CeEE
Q psy1859          16 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD--GYVN   93 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d--~~v~   93 (162)
                      -+|++|+-+.+.|++|+..|.|++  ++..+  ........+|..         +|+.+.-+.+|..+++.+.-  ....
T Consensus      1104 fTc~afs~~~~hL~vG~~~Geik~--~nv~s--G~~e~s~ncH~S---------avT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1104 FTCIAFSGGTNHLAVGSHAGEIKI--FNVSS--GSMEESVNCHQS---------AVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             eeeEEeecCCceEEeeeccceEEE--EEccC--cccccccccccc---------ccccccccCCcceeeeeccccCchHH
Confidence            478999999999999999999999  55444  333444566665         79999989899766655433  3567


Q ss_pred             EEeCCC-ccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec-c---CCCceeEEEecCC
Q psy1859          94 IWDGFN-KKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH-R---YDTGITSLCFSYD  162 (162)
Q Consensus        94 ~wd~~~-~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~---~~~~v~~v~~~pd  162 (162)
                      +|++.. +.+...+.    .-.++ |+.....-+.|+......+||+.++..+.++- +   -.-.-+...|+|+
T Consensus      1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred             HhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC
Confidence            999875 33443443    23345 77655555566666678999999987766632 1   1112245667764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.93  E-value=0.0016  Score=43.01  Aligned_cols=104  Identities=15%  Similarity=0.063  Sum_probs=65.7

Q ss_pred             EEEEEeeCCCeEEEE-cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEE
Q psy1859          17 RCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW   95 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~w   95 (162)
                      ..|+|+|+++.|+.+ +..+.|..++++...........+.....      .....-.+++..+|++.++....+.|.++
T Consensus       137 NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~~g~pDG~~vD~~G~l~va~~~~~~I~~~  210 (246)
T PF08450_consen  137 NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG------GPGYPDGLAVDSDGNLWVADWGGGRIVVF  210 (246)
T ss_dssp             EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS------SSCEEEEEEEBTTS-EEEEEETTTEEEEE
T ss_pred             cceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC------CCcCCCcceEcCCCCEEEEEcCCCEEEEE
Confidence            569999999877654 66677666666543311111111110110      00136789999999999988889999999


Q ss_pred             eCCCccceeeeeecccceeEE-Ec-CCCCEEEEe
Q psy1859          96 DGFNKKRLCQFHRYDTGITSL-FH-QEYNTFATG  127 (162)
Q Consensus        96 d~~~~~~~~~~~~~~~~v~~~-~~-~~~~~l~~~  127 (162)
                      |.+ ++.+..+......++++ |. ++.+.|+..
T Consensus       211 ~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  211 DPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             ETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred             CCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence            987 88888777665678888 84 565554443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2041|consensus

Probab=97.91  E-value=6.3e-05  Score=55.67  Aligned_cols=93  Identities=13%  Similarity=0.300  Sum_probs=73.4

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCcc---------------ceeeeeecccceeEE-EcCCCCEEEEecCCCeE
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKK---------------RLCQFHRYDTGITSL-FHQEYNTFATGGSDGYV  133 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~---------------~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i  133 (162)
                      ...+++|+.+..+++.|+.||.+++..+.+..               .-+++.+|...|..+ |+.+.+.|-++..+|.|
T Consensus        16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI   95 (1189)
T KOG2041|consen   16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI   95 (1189)
T ss_pred             eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence            48899999999999999999999998776421               123567899999999 99999999999999999


Q ss_pred             EEEeCCCceeeeeec--cCCCceeEEEecCC
Q psy1859         134 NIWDGFNKKRLCQFH--RYDTGITSLCFSYD  162 (162)
Q Consensus       134 ~iwd~~~~~~~~~~~--~~~~~v~~v~~~pd  162 (162)
                      .+|-+-.+.-...+.  ...+-|.+++|+-|
T Consensus        96 iVWmlykgsW~EEMiNnRnKSvV~SmsWn~d  126 (1189)
T KOG2041|consen   96 IVWMLYKGSWCEEMINNRNKSVVVSMSWNLD  126 (1189)
T ss_pred             EEEeeecccHHHHHhhCcCccEEEEEEEcCC
Confidence            999998775433332  23456778888754

>KOG3621|consensus

Probab=97.87  E-value=8.3e-05  Score=54.57  Aligned_cols=93  Identities=14%  Similarity=0.092  Sum_probs=65.4

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeee-ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCcee----
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH-RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKR----  143 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~-~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~----  143 (162)
                      .|.--+++..+.+++.|+.-|.+++|+...++....-. +..+.+..+ .+++..+++.|+..|.|.++-+....+    
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~  114 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD  114 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence            34444556667899999999999999977654332222 223333344 899999999999999999998865422    


Q ss_pred             -eeee-ccCCCceeEEEecCC
Q psy1859         144 -LCQF-HRYDTGITSLCFSYD  162 (162)
Q Consensus       144 -~~~~-~~~~~~v~~v~~~pd  162 (162)
                       +... +.|...|++++|++|
T Consensus       115 ~~t~~d~~~~~rVTal~Ws~~  135 (726)
T KOG3621|consen  115 YVTPCDKSHKCRVTALEWSKN  135 (726)
T ss_pred             eeccccccCCceEEEEEeccc
Confidence             1111 247789999999986

>KOG1920|consensus

Probab=97.84  E-value=0.001  Score=51.97  Aligned_cols=152  Identities=13%  Similarity=0.095  Sum_probs=88.3

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEe--cCCcccc-----------------eeeeeeeeeeecc-------
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYL--DTGPEMQ-----------------KMKYAFKCHRIKE-------   62 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~--~~~~~~~-----------------~~~~~~~~~~~~~-------   62 (162)
                      .......|.+++|+||.+.++..+..+++.+-+.  ++-....                 +....+.+.....       
T Consensus       105 vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~  184 (1265)
T KOG1920|consen  105 VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIE  184 (1265)
T ss_pred             eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccc
Confidence            3445677899999999999999999888887443  2211000                 0111122111100       


Q ss_pred             -----CcccceeceEEEEecCCCCEEEE-----ecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEec---
Q psy1859          63 -----DGIEKIYPVNAISFHQEYNTFAT-----GGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGG---  128 (162)
Q Consensus        63 -----~~~~~~~~v~~~~~~p~~~~l~~-----~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~---  128 (162)
                           .+......=+.|.|--+|.++++     ......+++||.+ |..-..-....+.-.++ |-|.|.++++-.   
T Consensus       185 ~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~  263 (1265)
T KOG1920|consen  185 KEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKT  263 (1265)
T ss_pred             ccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecC
Confidence                 00011122346999999999887     3333799999987 43322222233344566 999999888864   


Q ss_pred             CCCeEEEEeCCCceeee----eeccCCCceeEEEecCC
Q psy1859         129 SDGYVNIWDGFNKKRLC----QFHRYDTGITSLCFSYD  162 (162)
Q Consensus       129 ~d~~i~iwd~~~~~~~~----~~~~~~~~v~~v~~~pd  162 (162)
                      .|+.|.++.- +|-...    .+......|..++|+.+
T Consensus       264 sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~  300 (1265)
T KOG1920|consen  264 SDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSN  300 (1265)
T ss_pred             CCCcEEEEec-CCccccccccCCcccccchheeeecCC
Confidence            4567888874 343222    22223334788888753

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.81  E-value=0.0007  Score=45.76  Aligned_cols=93  Identities=15%  Similarity=0.183  Sum_probs=65.4

Q ss_pred             ceEEEEecCCC-CEEEEecCCC-eEEEEeCCCccceeeeeeccccee--EE-EcCCCCEEEEecC-----CCeEEEEeCC
Q psy1859          70 PVNAISFHQEY-NTFATGGSDG-YVNIWDGFNKKRLCQFHRYDTGIT--SL-FHQEYNTFATGGS-----DGYVNIWDGF  139 (162)
Q Consensus        70 ~v~~~~~~p~~-~~l~~~~~d~-~v~~wd~~~~~~~~~~~~~~~~v~--~~-~~~~~~~l~~~~~-----d~~i~iwd~~  139 (162)
                      ....++.+|.. ..++.+-.-| ...+||.++++....+....+.-.  .- ||+||++|++.-.     .|.|-|||..
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            46678889955 5555565554 566899999988877754333221  22 9999999999854     4789999998


Q ss_pred             -CceeeeeeccCCCceeEEEecCC
Q psy1859         140 -NKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       140 -~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                       +.+.+..+..|.-....+.+.||
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pD  109 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPD  109 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCC
Confidence             55667777766655566666665

>KOG4190|consensus

Probab=97.80  E-value=8.9e-05  Score=53.41  Aligned_cols=123  Identities=14%  Similarity=0.163  Sum_probs=80.5

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC--CCEEEEe-cC
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE--YNTFATG-GS   88 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~-~~   88 (162)
                      ++.++..+.|-.+-+++++  .||.+.+  ||+-.  .+........+..       +.+..+..-|+  ..+++++ +.
T Consensus       783 Hkk~i~~igfL~~lr~i~S--cD~giHl--WDPFi--gr~Laq~~dapk~-------~a~~~ikcl~nv~~~iliAgcsa  849 (1034)
T KOG4190|consen  783 HKKPIHDIGFLADLRSIAS--CDGGIHL--WDPFI--GRLLAQMEDAPKE-------GAGGNIKCLENVDRHILIAGCSA  849 (1034)
T ss_pred             ccCcccceeeeeccceeee--ccCccee--ecccc--cchhHhhhcCccc-------CCCceeEecccCcchheeeeccc
Confidence            4556666777777666554  4788999  55433  2222211111111       12333433333  3444444 78


Q ss_pred             CCeEEEEeCCCccceeeeeec-----ccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeee
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRY-----DTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQF  147 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~-----~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  147 (162)
                      ..+|+++|.+.+.....++..     ...+.++ ..+.|++++++-..|.|.+.|.++|+.+..+
T Consensus       850 eSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINsw  914 (1034)
T KOG4190|consen  850 ESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSW  914 (1034)
T ss_pred             hhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccC
Confidence            899999999998777666532     3456677 9999999999999999999999999876654

>KOG1912|consensus

Probab=97.79  E-value=8.1e-05  Score=55.47  Aligned_cols=89  Identities=15%  Similarity=0.176  Sum_probs=73.6

Q ss_pred             eEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCC------------CCEEEEecCCCeEEEEe
Q psy1859          71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQE------------YNTFATGGSDGYVNIWD  137 (162)
Q Consensus        71 v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~------------~~~l~~~~~d~~i~iwd  137 (162)
                      -.+++|+|.| +|+-|+ ...|.+-|.++.+.++.+..|...|+.+ |.|.            .-.+++++..|.|.+||
T Consensus        18 ~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d   95 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD   95 (1062)
T ss_pred             ccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence            5688999976 555554 5578899999999999999999999999 8872            12567778889999999


Q ss_pred             CCCceeeeeeccCCCceeEEEecC
Q psy1859         138 GFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus       138 ~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      +..+..+..+..|..++.+++|-|
T Consensus        96 ~~~~s~~~~l~~~~~~~qdl~W~~  119 (1062)
T KOG1912|consen   96 FVLASVINWLSHSNDSVQDLCWVP  119 (1062)
T ss_pred             ehhhhhhhhhcCCCcchhheeeee
Confidence            999888888888889999999865

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.79  E-value=0.0017  Score=37.18  Aligned_cols=99  Identities=17%  Similarity=0.238  Sum_probs=63.9

Q ss_pred             EEEEEEee---C-CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          16 TRCIKCFP---N-KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        16 ~~~i~~~~---~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      ++++++..   + .+.|++|+.|..|++  |+...    .+..+....          .|+++.-... ..|+.+..+|+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRv--f~~~e----~~~Ei~e~~----------~v~~L~~~~~-~~F~Y~l~NGT   64 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRV--FKGDE----IVAEITETD----------KVTSLCSLGG-GRFAYALANGT   64 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEE--EeCCc----EEEEEeccc----------ceEEEEEcCC-CEEEEEecCCE
Confidence            56777654   2 257999999999999  54422    333333222          5777766654 67999999999


Q ss_pred             EEEEeCCCccceeeeeecccceeEE--EcCCC--C-EEEEecCCCeEE
Q psy1859          92 VNIWDGFNKKRLCQFHRYDTGITSL--FHQEY--N-TFATGGSDGYVN  134 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~v~~~--~~~~~--~-~l~~~~~d~~i~  134 (162)
                      |-+|+-.  ..+.+.+. +..+.++  +..++  . -|++|-.+|.|-
T Consensus        65 VGvY~~~--~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   65 VGVYDRS--QRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEEeCc--ceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            9999863  33444443 3335555  44443  2 688888888764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.77  E-value=0.00074  Score=47.48  Aligned_cols=109  Identities=15%  Similarity=0.141  Sum_probs=68.5

Q ss_pred             CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCcccee
Q psy1859          25 KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC  104 (162)
Q Consensus        25 ~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~  104 (162)
                      +..+++++.+|.+..  +|..+  .+........           ......  ..+..++.++.+|.+..+|..+++.+.
T Consensus       241 ~~~vy~~~~~g~l~a--~d~~t--G~~~W~~~~~-----------~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W  303 (377)
T TIGR03300       241 GGQVYAVSYQGRVAA--LDLRS--GRVLWKRDAS-----------SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELW  303 (377)
T ss_pred             CCEEEEEEcCCEEEE--EECCC--CcEEEeeccC-----------CccCce--EeCCEEEEECCCCeEEEEECCCCcEEE
Confidence            345666677787777  55544  3333332211           111111  235677778889999999999987765


Q ss_pred             eeeecccc-eeEEEcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC
Q psy1859         105 QFHRYDTG-ITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD  151 (162)
Q Consensus       105 ~~~~~~~~-v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  151 (162)
                      ........ .... ...+..+++++.+|.|.++|..+++.+.++..+.
T Consensus       304 ~~~~~~~~~~ssp-~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~  350 (377)
T TIGR03300       304 KNDELKYRQLTAP-AVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDG  350 (377)
T ss_pred             ccccccCCccccC-EEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence            54321111 1111 1146789999999999999999999888776544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0882|consensus

Probab=97.76  E-value=0.00027  Score=49.61  Aligned_cols=106  Identities=21%  Similarity=0.195  Sum_probs=76.7

Q ss_pred             cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCC------ccc---
Q psy1859          32 SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN------KKR---  102 (162)
Q Consensus        32 ~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~------~~~---  102 (162)
                      -.++.+.+  +|......+..+.-+.         |..+|..+.++|-+..+++....|.|.-|....      .+.   
T Consensus       119 ~~sg~i~V--vD~~~d~~q~~~fkkl---------H~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~  187 (558)
T KOG0882|consen  119 FKSGKIFV--VDGFGDFCQDGYFKKL---------HFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFE  187 (558)
T ss_pred             ccCCCcEE--ECCcCCcCccceeccc---------ccCceEEEEeeccccceeeccccceeEeecCCCcccCcccccccc
Confidence            34467777  6654322333333233         444899999999999999999999999998873      111   


Q ss_pred             ------eeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859         103 ------LCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus       103 ------~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                            +..+........++ |+|+|..+.+-+.|..|+++++++++.++.+.
T Consensus       188 ~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  188 LKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID  240 (558)
T ss_pred             ccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence                  11223345667788 99999999999999999999999998777663

>KOG4499|consensus

Probab=97.76  E-value=0.0022  Score=41.69  Aligned_cols=90  Identities=18%  Similarity=0.231  Sum_probs=63.5

Q ss_pred             eEEEEecCCCCEEE-EecCCCeEEEEe--CCCcc-----ceeeeeec---cc-ceeEE-EcCCCCEEEEecCCCeEEEEe
Q psy1859          71 VNAISFHQEYNTFA-TGGSDGYVNIWD--GFNKK-----RLCQFHRY---DT-GITSL-FHQEYNTFATGGSDGYVNIWD  137 (162)
Q Consensus        71 v~~~~~~p~~~~l~-~~~~d~~v~~wd--~~~~~-----~~~~~~~~---~~-~v~~~-~~~~~~~l~~~~~d~~i~iwd  137 (162)
                      -..++|+.+.+.+. +-+.+-.|.-||  ..+|.     .+..++..   .. ..-.+ +..+|.+.++.-..++|...|
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence            45799998875544 556778887777  44442     23333321   11 11122 556788888888889999999


Q ss_pred             CCCceeeeeeccCCCceeEEEec
Q psy1859         138 GFNKKRLCQFHRYDTGITSLCFS  160 (162)
Q Consensus       138 ~~~~~~~~~~~~~~~~v~~v~~~  160 (162)
                      ..+|+.+..+......|++++|-
T Consensus       240 p~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  240 PTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             CCCCcEEEEEEcCCCceEEEEec
Confidence            99999999998888899999984

>KOG2444|consensus

Probab=97.73  E-value=0.00019  Score=46.01  Aligned_cols=104  Identities=10%  Similarity=0.052  Sum_probs=63.2

Q ss_pred             CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEE-EecCCCCEEEEecCCCeEEEEeCCCccce
Q psy1859          25 KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI-SFHQEYNTFATGGSDGYVNIWDGFNKKRL  103 (162)
Q Consensus        25 ~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~l~~~~~d~~v~~wd~~~~~~~  103 (162)
                      +..+++|+.+|.+.+|.|+...........  +..          .+.++ .--.++.+.+++..+|.|+.|++...+.+
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s--~~e----------~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~  137 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCS--GEE----------SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVL  137 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhc--ccc----------cceeccccccccceeEEeccCCceeeeccccCcee
Confidence            466899999999999888754321111111  111          22222 22223458889999999999999877766


Q ss_pred             eeeeecc-cceeEE-EcCCCCEEEEe--cCCCeEEEEeCCC
Q psy1859         104 CQFHRYD-TGITSL-FHQEYNTFATG--GSDGYVNIWDGFN  140 (162)
Q Consensus       104 ~~~~~~~-~~v~~~-~~~~~~~l~~~--~~d~~i~iwd~~~  140 (162)
                      .....|. .+.... .+..++++..+  +.|..++.|++..
T Consensus       138 g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  138 GYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            5555554 333333 44455566665  6666777777653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.73  E-value=0.00094  Score=47.90  Aligned_cols=79  Identities=16%  Similarity=0.168  Sum_probs=46.4

Q ss_pred             CCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc-----------eeeeee
Q psy1859          80 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK-----------KRLCQF  147 (162)
Q Consensus        80 ~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~-----------~~~~~~  147 (162)
                      |.+|+..+.+ .|.+||..+++.++++...  .+..+ |+++|.+++..+.+ .+.|++....           .....+
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~  192 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI  192 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred             CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE
Confidence            7777766554 8999999999999888643  37888 99999999999766 6777765322           023333


Q ss_pred             ccCCCceeEEEecCC
Q psy1859         148 HRYDTGITSLCFSYD  162 (162)
Q Consensus       148 ~~~~~~v~~v~~~pd  162 (162)
                      ..-...|.+.+|..|
T Consensus       193 ~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  193 HEISERIKSGCWVED  207 (443)
T ss_dssp             EEE-S--SEEEEETT
T ss_pred             EEecceeEEEEEEcC
Confidence            222446777777543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.72  E-value=0.0012  Score=43.16  Aligned_cols=112  Identities=19%  Similarity=0.174  Sum_probs=70.7

Q ss_pred             eCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccc
Q psy1859          23 PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR  102 (162)
Q Consensus        23 ~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~  102 (162)
                      +++..+++++.++.+..  +|..+  .+....+.....          +.... ...+..++.++.++.+..+|..+|+.
T Consensus        34 ~~~~~v~~~~~~~~l~~--~d~~t--G~~~W~~~~~~~----------~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~   98 (238)
T PF13360_consen   34 PDGGRVYVASGDGNLYA--LDAKT--GKVLWRFDLPGP----------ISGAP-VVDGGRVYVGTSDGSLYALDAKTGKV   98 (238)
T ss_dssp             EETTEEEEEETTSEEEE--EETTT--SEEEEEEECSSC----------GGSGE-EEETTEEEEEETTSEEEEEETTTSCE
T ss_pred             EeCCEEEEEcCCCEEEE--EECCC--CCEEEEeecccc----------cccee-eecccccccccceeeeEecccCCcce
Confidence            35666777788888888  66655  444444333211          00101 12245566666788999999999988


Q ss_pred             eeee-eecccc--e-eEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeecc
Q psy1859         103 LCQF-HRYDTG--I-TSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR  149 (162)
Q Consensus       103 ~~~~-~~~~~~--v-~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  149 (162)
                      +... ......  . ... ...++..++.+..++.|..+|+++|+.+.....
T Consensus        99 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~  150 (238)
T PF13360_consen   99 LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV  150 (238)
T ss_dssp             EEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred             eeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence            8774 322111  1 111 333478888888899999999999998877754

...

>KOG1275|consensus

Probab=97.69  E-value=0.00023  Score=54.03  Aligned_cols=74  Identities=19%  Similarity=0.251  Sum_probs=59.2

Q ss_pred             eEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEEEcCCCCEEEEecC---------CCeEEEEeCCCc
Q psy1859          71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGS---------DGYVNIWDGFNK  141 (162)
Q Consensus        71 v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~  141 (162)
                      |.-|.  .+++.+.+|...|.|.+-|.++-+.+.++.+|.+.+.++ +-.|++|++++.         |.-|+|||+|..
T Consensus       180 v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf-Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm  256 (1118)
T KOG1275|consen  180 VTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF-DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM  256 (1118)
T ss_pred             eEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee-eccCCeEEEeecccccccccccchhhhhhhhhh
Confidence            44444  346889999999999999999999999999999988775 556889999874         557899999976


Q ss_pred             eeeeee
Q psy1859         142 KRLCQF  147 (162)
Q Consensus       142 ~~~~~~  147 (162)
                      +.+..+
T Consensus       257 ral~PI  262 (1118)
T KOG1275|consen  257 RALSPI  262 (1118)
T ss_pred             hccCCc
Confidence            654433

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.66  E-value=0.0022  Score=45.17  Aligned_cols=108  Identities=15%  Similarity=0.141  Sum_probs=68.4

Q ss_pred             CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccce
Q psy1859          24 NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRL  103 (162)
Q Consensus        24 ~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~  103 (162)
                      .+..+++++.+|.+..  +|..+  .+.+........         .......  ++..++.++.++.+..+|..+|+.+
T Consensus        64 ~~~~v~v~~~~g~v~a--~d~~t--G~~~W~~~~~~~---------~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~  128 (377)
T TIGR03300        64 AGGKVYAADADGTVVA--LDAET--GKRLWRVDLDER---------LSGGVGA--DGGLVFVGTEKGEVIALDAEDGKEL  128 (377)
T ss_pred             ECCEEEEECCCCeEEE--EEccC--CcEeeeecCCCC---------cccceEE--cCCEEEEEcCCCEEEEEECCCCcEe
Confidence            3567778888887766  66555  344443222211         0111222  3567778888999999999999887


Q ss_pred             eeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859         104 CQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus       104 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      ...... ..+.+. .- .+..++.+..++.|..+|.++|+.+..+.
T Consensus       129 W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  172 (377)
T TIGR03300       129 WRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYS  172 (377)
T ss_pred             eeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEc
Confidence            665432 222222 11 34567778889999999999998766654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1920|consensus

Probab=97.66  E-value=0.0039  Score=49.00  Aligned_cols=68  Identities=7%  Similarity=0.051  Sum_probs=50.0

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      +.|.++.|.-+.+.++.+...|.|.+  .|+.+  ...  ..-+...        ..|.+++|+|++..++..+...++.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iil--vd~et--~~~--eivg~vd--------~GI~aaswS~Dee~l~liT~~~tll  134 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIIL--VDPET--LEL--EIVGNVD--------NGISAASWSPDEELLALITGRQTLL  134 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEE--Ecccc--cce--eeeeecc--------CceEEEeecCCCcEEEEEeCCcEEE
Confidence            56777888888888999999999998  56654  222  2222222        2699999999999999888877776


Q ss_pred             EE
Q psy1859          94 IW   95 (162)
Q Consensus        94 ~w   95 (162)
                      +-
T Consensus       135 ~m  136 (1265)
T KOG1920|consen  135 FM  136 (1265)
T ss_pred             EE
Confidence            54

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.66  E-value=0.00028  Score=33.91  Aligned_cols=35  Identities=23%  Similarity=0.366  Sum_probs=29.9

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEec
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLD   43 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~   43 (162)
                      +..+...+.+++|+|....++.++.+|.|.++.++
T Consensus         7 ~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen    7 EKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            34556678999999999999999999999997664

>KOG1008|consensus

Probab=97.65  E-value=9.4e-06  Score=58.86  Aligned_cols=139  Identities=13%  Similarity=0.158  Sum_probs=82.8

Q ss_pred             ccccEEEEEEee-CCCeEEEE----cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe
Q psy1859          12 LKFQTRCIKCFP-NKQGYVLS----SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG   86 (162)
Q Consensus        12 ~~~~~~~i~~~~-~~~~l~~~----~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~   86 (162)
                      +..+.++++|++ |.+.|++|    -.|..+.||+....-..++....+....        .....++.|-.+.+++++|
T Consensus       101 ~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~--------l~gqns~cwlrd~klvlaG  172 (783)
T KOG1008|consen  101 YARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSST--------LDGQNSVCWLRDTKLVLAG  172 (783)
T ss_pred             ccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccccccc--------ccCccccccccCcchhhcc
Confidence            344557789998 56667776    3345788977654310122222222211        1145688888778999999


Q ss_pred             cCCCeEEEEeCCCcc-ceeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEe-CCCce-eeeeeccCC----CceeEE
Q psy1859          87 GSDGYVNIWDGFNKK-RLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWD-GFNKK-RLCQFHRYD----TGITSL  157 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~-~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd-~~~~~-~~~~~~~~~----~~v~~v  157 (162)
                      .....+.++|++... ....+  ....+..+ .+| .+.|++.-. |+.|-+|| .++-+ ++..+...+    ..+..+
T Consensus       173 m~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~  249 (783)
T KOG1008|consen  173 MTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFAL  249 (783)
T ss_pred             cccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeE
Confidence            999999999998431 12222  23344445 566 566777765 99999999 43322 233332112    247888


Q ss_pred             EecC
Q psy1859         158 CFSY  161 (162)
Q Consensus       158 ~~~p  161 (162)
                      +|+|
T Consensus       250 aycP  253 (783)
T KOG1008|consen  250 AYCP  253 (783)
T ss_pred             Eecc
Confidence            8887

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.64  E-value=0.0097  Score=42.25  Aligned_cols=124  Identities=14%  Similarity=0.113  Sum_probs=74.7

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccc-ee---eeeee---------------e-eeecc----------Cc
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQ-KM---KYAFK---------------C-HRIKE----------DG   64 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~-~~---~~~~~---------------~-~~~~~----------~~   64 (162)
                      .|..+++.++...|+++...|.|.||.|..++... +.   ...++               . ++...          --
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            47889999998999999999999999997653221 00   00000               0 00000          00


Q ss_pred             ccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeee--e------cccceeEE-EcC-----CC---CEEEEe
Q psy1859          65 IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH--R------YDTGITSL-FHQ-----EY---NTFATG  127 (162)
Q Consensus        65 ~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~--~------~~~~v~~~-~~~-----~~---~~l~~~  127 (162)
                      ....++|++++.|. =-+++.|..+|.+.+.|+|....+..-.  .      ....++++ |.-     |+   -.+++|
T Consensus        83 ~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            11245889999874 4588999999999999998776555421  1      22356666 552     33   378888


Q ss_pred             cCCCeEEEEeCC
Q psy1859         128 GSDGYVNIWDGF  139 (162)
Q Consensus       128 ~~d~~i~iwd~~  139 (162)
                      ...|.+.+|.+.
T Consensus       162 Tn~G~v~~fkIl  173 (395)
T PF08596_consen  162 TNSGNVLTFKIL  173 (395)
T ss_dssp             ETTSEEEEEEEE
T ss_pred             eCCCCEEEEEEe
Confidence            999999999874

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2114|consensus

Probab=97.63  E-value=0.0071  Score=46.04  Aligned_cols=129  Identities=10%  Similarity=0.078  Sum_probs=81.5

Q ss_pred             cccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeE
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV   92 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v   92 (162)
                      ..++.+++.+.+-+.+++|-.+|.|..+.=|...  .+....--.|+..       ++|+++++..++..++-......|
T Consensus       125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R--Drgsr~~~~~~~~-------~pITgL~~~~d~~s~lFv~Tt~~V  195 (933)
T KOG2114|consen  125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR--DRGSRQDYSHRGK-------EPITGLALRSDGKSVLFVATTEQV  195 (933)
T ss_pred             CCcceEEEEEccccEEEEEecCcEEEEEcCcchh--ccccceeeeccCC-------CCceeeEEecCCceeEEEEeccee
Confidence            4556789999988889999999999986545432  1111111113322       389999998888653333345678


Q ss_pred             EEEeCCCccc-eeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec-cCC
Q psy1859          93 NIWDGFNKKR-LCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH-RYD  151 (162)
Q Consensus        93 ~~wd~~~~~~-~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~  151 (162)
                      .+|.+....+ ...+..++....|- +++....++.+ .+..+.+|+....+.-..+. +|.
T Consensus       196 ~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~~e~l~fY~sd~~~~cfaf~~g~k  256 (933)
T KOG2114|consen  196 MLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA-GSEFLYFYDSDGRGPCFAFEVGEK  256 (933)
T ss_pred             EEEEecCCCcceeeeccCCccceeeecCCCCccEEEe-cCceEEEEcCCCcceeeeecCCCe
Confidence            8998884442 44567777777777 77644434444 34478999886544444444 443

>KOG1645|consensus

Probab=97.63  E-value=0.00021  Score=49.38  Aligned_cols=74  Identities=12%  Similarity=0.135  Sum_probs=57.0

Q ss_pred             cccEEEEEEeeCCC-eEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCC
Q psy1859          13 KFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDG   90 (162)
Q Consensus        13 ~~~~~~i~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~   90 (162)
                      ...|+.++++|..+ .+..++.+..|+|  +|..+  ...+..+..+.          ++.+++|.-+. +.+..|..+|
T Consensus       193 g~~IrdlafSp~~~GLl~~asl~nkiki--~dlet--~~~vssy~a~~----------~~wSC~wDlde~h~IYaGl~nG  258 (463)
T KOG1645|consen  193 GSFIRDLAFSPFNEGLLGLASLGNKIKI--MDLET--SCVVSSYIAYN----------QIWSCCWDLDERHVIYAGLQNG  258 (463)
T ss_pred             chhhhhhccCccccceeeeeccCceEEE--Eeccc--ceeeeheeccC----------CceeeeeccCCcceeEEeccCc
Confidence            34567799999876 6778899999999  55544  44444444443          69999998887 7788889999


Q ss_pred             eEEEEeCCCc
Q psy1859          91 YVNIWDGFNK  100 (162)
Q Consensus        91 ~v~~wd~~~~  100 (162)
                      .|.+||++..
T Consensus       259 ~VlvyD~R~~  268 (463)
T KOG1645|consen  259 MVLVYDMRQP  268 (463)
T ss_pred             eEEEEEccCC
Confidence            9999999964

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.56  E-value=0.0054  Score=45.79  Aligned_cols=130  Identities=10%  Similarity=-0.065  Sum_probs=73.2

Q ss_pred             cEEEEEEeeCCCeEEEEc------CCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859          15 QTRCIKCFPNKQGYVLSS------IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~------~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      .+...+++|+|+.++...      .+..-.||..+.... .... . .+.           ....-.|+|+|..+.+...
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~~~l-t-~g~-----------~~t~PsWspDG~~lw~v~d  416 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-AVQV-L-EGH-----------SLTRPSWSLDADAVWVVVD  416 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-ceee-e-cCC-----------CCCCceECCCCCceEEEec
Confidence            346778999999887664      345557776664321 1111 1 111           2677889999876665542


Q ss_pred             C------------CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEE---EeCCCcee-e---eeec
Q psy1859          89 D------------GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNI---WDGFNKKR-L---CQFH  148 (162)
Q Consensus        89 d------------~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~i---wd~~~~~~-~---~~~~  148 (162)
                      .            +.+.+.++..+....   .....|..+ |||||..++... ++.|.+   -....|.. +   ..+.
T Consensus       417 g~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~  492 (591)
T PRK13616        417 GNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVG  492 (591)
T ss_pred             CcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEee
Confidence            2            334333444333222   234569999 999999887765 467776   33333431 1   1121


Q ss_pred             -cCCCceeEEEecCC
Q psy1859         149 -RYDTGITSLCFSYD  162 (162)
Q Consensus       149 -~~~~~v~~v~~~pd  162 (162)
                       .-...+.++.|.+|
T Consensus       493 ~~l~~~~~~l~W~~~  507 (591)
T PRK13616        493 PGLGDTAVSLDWRTG  507 (591)
T ss_pred             cccCCccccceEecC
Confidence             22233577777654

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.56  E-value=0.0063  Score=45.23  Aligned_cols=53  Identities=13%  Similarity=0.032  Sum_probs=37.4

Q ss_pred             CCeEEEEeCCC----c-cceeeeeecccceeEE-EcCCCCEEEEec-CCCeEEEEeCCCce
Q psy1859          89 DGYVNIWDGFN----K-KRLCQFHRYDTGITSL-FHQEYNTFATGG-SDGYVNIWDGFNKK  142 (162)
Q Consensus        89 d~~v~~wd~~~----~-~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~iwd~~~~~  142 (162)
                      ++.|.+.|.++    + +.+..+. -......+ ++|||+++++++ .++++.|.|+.+.+
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            35577788776    2 3333333 34566778 999999887776 58899999998644

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.53  E-value=0.0034  Score=46.52  Aligned_cols=70  Identities=13%  Similarity=0.066  Sum_probs=51.1

Q ss_pred             ceEEEEecCCCCEEEEe-cCCCeEEEEeCCCccc------------eeeeeecccceeEE-EcCCCCEEEEecCCCeEEE
Q psy1859          70 PVNAISFHQEYNTFATG-GSDGYVNIWDGFNKKR------------LCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNI  135 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~-~~d~~v~~wd~~~~~~------------~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~i  135 (162)
                      ....++++|+|++++++ ..+..+.+.|+.+.+.            ..+..- ....... |+++|....+.--|.+|-.
T Consensus       322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~k  400 (635)
T PRK02888        322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVK  400 (635)
T ss_pred             CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEE
Confidence            46789999999766654 5689999999987543            222222 2233344 9999987777788999999


Q ss_pred             EeCCC
Q psy1859         136 WDGFN  140 (162)
Q Consensus       136 wd~~~  140 (162)
                      ||+.+
T Consensus       401 wn~~~  405 (635)
T PRK02888        401 WNIEA  405 (635)
T ss_pred             EehHH
Confidence            99875

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.53  E-value=0.01  Score=40.62  Aligned_cols=90  Identities=14%  Similarity=0.084  Sum_probs=59.1

Q ss_pred             ceEEEEecCCCCEEEEe-cCCCeEEEEeCCC--cc---c--eeeeeecccceeEE-EcCCCCEEEEecCCC-eEEEEeCC
Q psy1859          70 PVNAISFHQEYNTFATG-GSDGYVNIWDGFN--KK---R--LCQFHRYDTGITSL-FHQEYNTFATGGSDG-YVNIWDGF  139 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~-~~d~~v~~wd~~~--~~---~--~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~-~i~iwd~~  139 (162)
                      .-++|+|||+++.|... +..+.|.-|++..  +.   .  ...+....+..-.+ ...+|.+.+.+..+| .|..|+..
T Consensus       164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence            46789999999666555 5568888887762  21   1  11111122333344 667888775554544 89999997


Q ss_pred             CceeeeeeccCCCceeEEEec
Q psy1859         140 NKKRLCQFHRYDTGITSLCFS  160 (162)
Q Consensus       140 ~~~~~~~~~~~~~~v~~v~~~  160 (162)
                       ++.+..+..+...+++++|-
T Consensus       244 -G~l~~~i~lP~~~~t~~~Fg  263 (307)
T COG3386         244 -GKLLGEIKLPVKRPTNPAFG  263 (307)
T ss_pred             -CcEEEEEECCCCCCccceEe
Confidence             88888887766678888874

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.52  E-value=0.0039  Score=47.71  Aligned_cols=67  Identities=12%  Similarity=0.213  Sum_probs=50.8

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeC
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDG  138 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~  138 (162)
                      ...|++-+.+| .||+|+.+|.|++||--..+....+++-+.+|..+ .+.||+++++.+.. .|.+++.
T Consensus       579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t  646 (794)
T PF08553_consen  579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT  646 (794)
T ss_pred             CceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence            47788777666 78899999999999954333344566778999999 99999998887655 5555554

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2079|consensus

Probab=97.51  E-value=0.00029  Score=54.26  Aligned_cols=78  Identities=27%  Similarity=0.313  Sum_probs=60.6

Q ss_pred             CCEEEEecCCCeEEEEeCCCc-cceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEE
Q psy1859          80 YNTFATGGSDGYVNIWDGFNK-KRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL  157 (162)
Q Consensus        80 ~~~l~~~~~d~~v~~wd~~~~-~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v  157 (162)
                      +-.++.|+..|.+...|.... .+...-....++|+++ |+.+|..++.|-.+|.|.+||+..++.++.+..|..+.+++
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            456888999999998887753 2222223346789999 99999999999999999999999988888877666555544

>KOG3617|consensus

Probab=97.48  E-value=0.00096  Score=50.72  Aligned_cols=73  Identities=12%  Similarity=0.143  Sum_probs=54.3

Q ss_pred             cccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeE
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV   92 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v   92 (162)
                      +.|+.+++|+|..-.|+.|-.-|.+.+|.-+..+     ..+...        .|..++..+.|||+|..++++..-|.+
T Consensus        59 P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-----~htv~~--------th~a~i~~l~wS~~G~~l~t~d~~g~v  125 (1416)
T KOG3617|consen   59 PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-----THTVVE--------THPAPIQGLDWSHDGTVLMTLDNPGSV  125 (1416)
T ss_pred             ceehhhhccChHHHHHhhccccceeEEEecCCce-----eeeecc--------CCCCCceeEEecCCCCeEEEcCCCcee
Confidence            4566779999987777887777889985433211     111111        155689999999999999999999999


Q ss_pred             EEEeCC
Q psy1859          93 NIWDGF   98 (162)
Q Consensus        93 ~~wd~~   98 (162)
                      .+|...
T Consensus       126 ~lwr~d  131 (1416)
T KOG3617|consen  126 HLWRYD  131 (1416)
T ss_pred             EEEEee
Confidence            999776

>KOG0882|consensus

Probab=97.43  E-value=0.0041  Score=43.99  Aligned_cols=134  Identities=11%  Similarity=-0.021  Sum_probs=87.4

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCC--cccceeeeeeeeeeeccC-cccceeceEEEEecCCCCEEEEecC
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTG--PEMQKMKYAFKCHRIKED-GIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      +-.++.++.+++.+..+++....|-|.-|.-+..  .......+.++. ..... -.+......++.|+|++..+.+-+.
T Consensus       143 H~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~-eTdLy~f~K~Kt~pts~Efsp~g~qistl~~  221 (558)
T KOG0882|consen  143 HFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKH-ETDLYGFPKAKTEPTSFEFSPDGAQISTLNP  221 (558)
T ss_pred             ccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccc-cchhhcccccccCccceEEccccCcccccCc
Confidence            3356778889998888888888899998654420  000111111111 10000 0112224679999999999999999


Q ss_pred             CCeEEEEeCCCccceeeeee--------------------------------ccc-ceeEE-EcCCCCEEEEecCCCeEE
Q psy1859          89 DGYVNIWDGFNKKRLCQFHR--------------------------------YDT-GITSL-FHQEYNTFATGGSDGYVN  134 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~--------------------------------~~~-~v~~~-~~~~~~~l~~~~~d~~i~  134 (162)
                      |..|+++++++++.++.+..                                +.. .-+.+ |...|++|+.++--| |+
T Consensus       222 DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ik  300 (558)
T KOG0882|consen  222 DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IK  300 (558)
T ss_pred             ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EE
Confidence            99999999998876554421                                111 12334 888899999987654 88


Q ss_pred             EEeCCCceeeeee
Q psy1859         135 IWDGFNKKRLCQF  147 (162)
Q Consensus       135 iwd~~~~~~~~~~  147 (162)
                      +.++.++..++.+
T Consensus       301 vin~~tn~v~ri~  313 (558)
T KOG0882|consen  301 VINLDTNTVVRIL  313 (558)
T ss_pred             EEEeecCeEEEEe
Confidence            9999988877665

>KOG2114|consensus

Probab=97.42  E-value=0.019  Score=43.85  Aligned_cols=133  Identities=16%  Similarity=0.124  Sum_probs=80.3

Q ss_pred             CeEEEEcCCC-----cEEEEEecCCccc--ceeeeeeeeeeeccCcc-cceeceEEEEecCCCCEEEEecCCCeEEEEeC
Q psy1859          26 QGYVLSSIEG-----RAAVEYLDTGPEM--QKMKYAFKCHRIKEDGI-EKIYPVNAISFHQEYNTFATGGSDGYVNIWDG   97 (162)
Q Consensus        26 ~~l~~~~~~g-----~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~   97 (162)
                      .+|++.+.|+     .++||+++...+.  +.....   |+...... ..+.++.+++.+.+-+.++.|-.+|.|..+.-
T Consensus        78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~---~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~G  154 (933)
T KOG2114|consen   78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYE---HRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKG  154 (933)
T ss_pred             eEEEEEeecCCCCceEEEEecccccCCCCCcceeee---eeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcC
Confidence            4555554443     5788877654321  222211   21111001 13457899999998899999999999998854


Q ss_pred             CC----ccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCcee-eeeeccCCCceeEEEecC
Q psy1859          98 FN----KKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKR-LCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        98 ~~----~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~v~~~p  161 (162)
                      .-    +....-....+.+|+.+ +..+++.++....-..|.+|.+....+ ..++..|...+.|.+|++
T Consensus       155 Di~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~  224 (933)
T KOG2114|consen  155 DILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSD  224 (933)
T ss_pred             cchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCC
Confidence            31    22222223456789999 777777633333344789999864332 444667777788877765

>KOG3630|consensus

Probab=97.38  E-value=0.002  Score=50.34  Aligned_cols=143  Identities=13%  Similarity=0.062  Sum_probs=82.6

Q ss_pred             cccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCccccee---eeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecC
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKM---KYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGS   88 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~   88 (162)
                      +..+..+.+++|+...++........|+.||..+-....   ...+..+..   .........++.|+|.- ...+.+..
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~t---s~ek~vf~~~~~wnP~vp~n~av~l~  176 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSAT---SFEKPVFQLKNVWNPLVPLNSAVDLS  176 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccc---hhccccccccccccCCccchhhhhcc
Confidence            344555667788766555433323333335543211111   111122211   11122256788999976 45677788


Q ss_pred             CCeEEEEeCCCccc-eeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeecc----CCCceeEEEec
Q psy1859          89 DGYVNIWDGFNKKR-LCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR----YDTGITSLCFS  160 (162)
Q Consensus        89 d~~v~~wd~~~~~~-~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~v~~~  160 (162)
                      |+.|++..+..-.. +..+ ......+++ |+|.|+.++.|...|++.-|... ++....+..    ....|.+|+|-
T Consensus       177 dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl  252 (1405)
T KOG3630|consen  177 DLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWL  252 (1405)
T ss_pred             ccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEe
Confidence            99998887764322 2232 245667788 99999999999999999988763 333333321    13578888884

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.22  E-value=0.0078  Score=46.14  Aligned_cols=112  Identities=16%  Similarity=0.157  Sum_probs=66.2

Q ss_pred             EEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC-------CCEEEEecCCCeEEEEeCCCcc--ceee-ee
Q psy1859          38 AVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE-------YNTFATGGSDGYVNIWDGFNKK--RLCQ-FH  107 (162)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-------~~~l~~~~~d~~v~~wd~~~~~--~~~~-~~  107 (162)
                      .|+.+|...  .+.+-..+.+...        +|..+  .|+       ...-..|-.+..+..||.|-..  .+.. ..
T Consensus       505 ~ly~mDLe~--GKVV~eW~~~~~~--------~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  505 KLYKMDLER--GKVVEEWKVHDDI--------PVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             ceEEEecCC--CcEEEEeecCCCc--------ceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            456677766  4455444444321        24443  342       2345567778889999998632  2211 11


Q ss_pred             --ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         108 --RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       108 --~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                        .......|+ -+.+ .++|+|+.+|.||+||-...+.-..+.+-..+|.+|..+.|
T Consensus       573 ~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~D  629 (794)
T PF08553_consen  573 QYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTAD  629 (794)
T ss_pred             ccccCCCceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCC
Confidence              123334454 4444 48999999999999995332323334566789999888765

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.18  E-value=0.028  Score=36.76  Aligned_cols=114  Identities=18%  Similarity=0.188  Sum_probs=64.3

Q ss_pred             CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeecc-Ccccceece-EEEEecCCCCEEEEecCCCe-EEEEeCCCc
Q psy1859          24 NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE-DGIEKIYPV-NAISFHQEYNTFATGGSDGY-VNIWDGFNK  100 (162)
Q Consensus        24 ~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v-~~~~~~p~~~~l~~~~~d~~-v~~wd~~~~  100 (162)
                      .+..++++..++.+..  +|..+  .+.+.......... ........+ ..+.+. ++ .+..++.++. +.+ |+.++
T Consensus       121 ~~~~~~~~~~~g~l~~--~d~~t--G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg  193 (238)
T PF13360_consen  121 DGDRLYVGTSSGKLVA--LDPKT--GKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATG  193 (238)
T ss_dssp             ETTEEEEEETCSEEEE--EETTT--TEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTT
T ss_pred             ecCEEEEEeccCcEEE--EecCC--CcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCC
Confidence            3677778777888877  66655  34444333311100 000000011 223333 34 6666666664 555 99998


Q ss_pred             cceeeeeecccceeEEEcCCCCEEEEecCCCeEEEEeCCCceeeee
Q psy1859         101 KRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQ  146 (162)
Q Consensus       101 ~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  146 (162)
                      +.+....  ......+...++..++.++.++.|..||+++++.+.+
T Consensus       194 ~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  194 EKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             CEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            8554222  2222221345777888887999999999999987654

...

>KOG1832|consensus

Probab=97.18  E-value=0.00068  Score=51.76  Aligned_cols=74  Identities=18%  Similarity=0.214  Sum_probs=63.7

Q ss_pred             ceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCC--eEEEEeCCC
Q psy1859          67 KIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDG--YVNIWDGFN  140 (162)
Q Consensus        67 ~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~--~i~iwd~~~  140 (162)
                      |....++++|+-+.+.|+.|+..|.|+++++.+|.......+|...++.+ =+.+|..+.+.+.-.  ...+|++..
T Consensus      1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred             cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence            44579999999999999999999999999999999999999999999999 777898887776443  467898853

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.16  E-value=0.045  Score=38.84  Aligned_cols=113  Identities=12%  Similarity=0.097  Sum_probs=74.9

Q ss_pred             EEEEEeeCCCeE-EEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC---CCeE
Q psy1859          17 RCIKCFPNKQGY-VLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS---DGYV   92 (162)
Q Consensus        17 ~~i~~~~~~~~l-~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---d~~v   92 (162)
                      ..++.++.++.+ +....+..+.+  +|...  .+.......-.          ....++++|+++.+..+..   ++.+
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~v--id~~~--~~~~~~~~vG~----------~P~~~~~~~~~~~vYV~n~~~~~~~v  142 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSV--IDTAT--NTVLGSIPVGL----------GPVGLAVDPDGKYVYVANAGNGNNTV  142 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEE--EcCcc--cceeeEeeecc----------CCceEEECCCCCEEEEEecccCCceE
Confidence            456777777644 44455577888  55433  22222222111          3678999999965555443   7899


Q ss_pred             EEEeCCCccceeeeeecccceeEE-EcCCCCEEEEec-CCCeEEEEeCCCceee
Q psy1859          93 NIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGG-SDGYVNIWDGFNKKRL  144 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~iwd~~~~~~~  144 (162)
                      .+.|..+.+.+........+ ..+ ++|+|..++... .++.|.+.|.......
T Consensus       143 svid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~  195 (381)
T COG3391         143 SVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV  195 (381)
T ss_pred             EEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence            99999888887775543334 667 999999776665 7889999997665444

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.14  E-value=0.0045  Score=43.30  Aligned_cols=55  Identities=11%  Similarity=-0.038  Sum_probs=39.2

Q ss_pred             CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeee
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLC  145 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  145 (162)
                      .+.+.++|+.+++....... ...+... |+|+|+.++... ++.|.+++..++...+
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~   77 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ   77 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred             ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence            46788999998654433322 5567777 999999999884 5789999987775443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.13  E-value=0.014  Score=41.68  Aligned_cols=80  Identities=14%  Similarity=0.108  Sum_probs=58.5

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeE-E--EcCCC----------------C-EEEEecC
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITS-L--FHQEY----------------N-TFATGGS  129 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~-~--~~~~~----------------~-~l~~~~~  129 (162)
                      .+.++..+|.+++.++...-|.|.++|+..+..++.+++....-.. +  ..+..                . +++.+-.
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            5778999999998888877899999999999888877765432211 1  11111                1 3455667


Q ss_pred             CCeEEEEeCCCceeeeeecc
Q psy1859         130 DGYVNIWDGFNKKRLCQFHR  149 (162)
Q Consensus       130 d~~i~iwd~~~~~~~~~~~~  149 (162)
                      -|.|-||.+++|..+..+..
T Consensus       389 Rg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  389 RGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             CCeEEEEecCCCCEEEEEEe
Confidence            89999999999988777653

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.11  E-value=0.062  Score=39.74  Aligned_cols=123  Identities=10%  Similarity=0.046  Sum_probs=74.0

Q ss_pred             ccEEEEEEeeC----CCeEEEEcCCCcEEEEEecCCccc-ceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859          14 FQTRCIKCFPN----KQGYVLSSIEGRAAVEYLDTGPEM-QKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus        14 ~~~~~i~~~~~----~~~l~~~~~~g~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      .|+..++|.|-    ...+++......|.||.+-..... .+......+.-.+.    ..---.++.|||....|+.-..
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~----~pvLpQGCVWHPk~~iL~VLT~  132 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREP----FPVLPQGCVWHPKKAILTVLTA  132 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCC----cccCCCcccccCCCceEEEEec
Confidence            46788999984    335666678889999887654311 22222222221110    0012347889999988877665


Q ss_pred             CCeEEEEeCCCc-ccee-eeeecccceeEE-EcCCCCEEEEecCC-CeEEEEeCCCc
Q psy1859          89 DGYVNIWDGFNK-KRLC-QFHRYDTGITSL-FHQEYNTFATGGSD-GYVNIWDGFNK  141 (162)
Q Consensus        89 d~~v~~wd~~~~-~~~~-~~~~~~~~v~~~-~~~~~~~l~~~~~d-~~i~iwd~~~~  141 (162)
                      ...-.+++++.. ..++ .+ ...+-|.|. |.+||+.|+++-.. =.-++||-..+
T Consensus       133 ~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  133 RDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             CceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            555456666543 2332 33 345678888 99999987776443 34678986544

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.09  E-value=0.028  Score=40.00  Aligned_cols=90  Identities=21%  Similarity=0.190  Sum_probs=58.3

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCcc-------------------------------------------ceeee
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKK-------------------------------------------RLCQF  106 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~-------------------------------------------~~~~~  106 (162)
                      .|+.+.|+++...|+++...|.|.+|.....+                                           +...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            48899999998899999999999888543211                                           01111


Q ss_pred             eecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec--c------CCCceeEEEec
Q psy1859         107 HRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH--R------YDTGITSLCFS  160 (162)
Q Consensus       107 ~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~------~~~~v~~v~~~  160 (162)
                      ....++|+++ .| |=.+++.|..+|.+.|.|+|....+..-.  .      ....|+++.|+
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~  144 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFS  144 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEE
Confidence            2234677787 76 55699999999999999999887665421  1      23467888885

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.00  E-value=0.048  Score=36.26  Aligned_cols=140  Identities=8%  Similarity=0.037  Sum_probs=68.4

Q ss_pred             EEEEEEeeCCCeEEEEcCCCcEEEEEecCCccccee----eeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          16 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKM----KYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      ...|++.-++.++++--.++.+.+...+..+.....    .+.+...      ..+...+..++|+|.++.|+.+-...-
T Consensus        67 ~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~------~~~N~G~EGla~D~~~~~L~v~kE~~P  140 (248)
T PF06977_consen   67 YEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFP------NKGNKGFEGLAYDPKTNRLFVAKERKP  140 (248)
T ss_dssp             EEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---------SS--EEEEEETTTTEEEEEEESSS
T ss_pred             ceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccc------cCCCcceEEEEEcCCCCEEEEEeCCCC
Confidence            456777766666665555788887666433211111    1111111      012226899999998866666655544


Q ss_pred             EEEEeCCC---ccceeee--------eecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCceeeeeeccCC-------
Q psy1859          92 VNIWDGFN---KKRLCQF--------HRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD-------  151 (162)
Q Consensus        92 v~~wd~~~---~~~~~~~--------~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------  151 (162)
                      ..+|.++.   ...+...        ......+..+ ++| .+.+++.+..+..|..+| .+|+.+..+....       
T Consensus       141 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~  219 (248)
T PF06977_consen  141 KRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSK  219 (248)
T ss_dssp             EEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS
T ss_pred             hhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCccc
Confidence            55555543   1111111        1122346677 888 556777788888999999 5777666554222       


Q ss_pred             --CceeEEEecCC
Q psy1859         152 --TGITSLCFSYD  162 (162)
Q Consensus       152 --~~v~~v~~~pd  162 (162)
                        ...-.|+|.+|
T Consensus       220 ~~~QpEGIa~d~~  232 (248)
T PF06977_consen  220 DIPQPEGIAFDPD  232 (248)
T ss_dssp             ---SEEEEEE-TT
T ss_pred             ccCCccEEEECCC
Confidence              24567787764

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.95  E-value=0.026  Score=32.39  Aligned_cols=62  Identities=21%  Similarity=0.316  Sum_probs=43.3

Q ss_pred             EEEecCCC-CEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeC
Q psy1859          73 AISFHQEY-NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDG  138 (162)
Q Consensus        73 ~~~~~p~~-~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~  138 (162)
                      -+.|..+| +.|++|+.|..|++|+-.  ..+.++.. ...++.+ -. .+..++.+-.+|+|-+|+-
T Consensus         7 ~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~-~~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    7 LFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSL-GGGRFAYALANGTVGVYDR   70 (111)
T ss_pred             EEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEc-CCCEEEEEecCCEEEEEeC
Confidence            34445555 789999999999999854  45566653 3455555 22 2367888889998888875

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.90  E-value=0.062  Score=37.22  Aligned_cols=64  Identities=16%  Similarity=0.221  Sum_probs=42.7

Q ss_pred             CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEe-cCCCeEEEEeCCCccceeeeeec
Q psy1859          34 EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATG-GSDGYVNIWDGFNKKRLCQFHRY  109 (162)
Q Consensus        34 ~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~-~~d~~v~~wd~~~~~~~~~~~~~  109 (162)
                      ++.-.||.+|..+  .+.+..+....          ++.+|+.+.+. .+|++. ..++.+.+||..+++.+.++..-
T Consensus       266 dpgteVWv~D~~t--~krv~Ri~l~~----------~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  266 DPGTEVWVYDLKT--HKRVARIPLEH----------PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             S-EEEEEEEETTT--TEEEEEEEEEE----------EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred             CCceEEEEEECCC--CeEEEEEeCCC----------ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence            3456789999887  55555544332          47799999887 466554 46899999999999998888654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.90  E-value=0.065  Score=36.18  Aligned_cols=56  Identities=14%  Similarity=0.261  Sum_probs=44.0

Q ss_pred             EEecCCCCEEEEecCC-----CeEEEEeCCCc-cceeeeeecccceeEE-EcCCCCEEEEecC
Q psy1859          74 ISFHQEYNTFATGGSD-----GYVNIWDGFNK-KRLCQFHRYDTGITSL-FHQEYNTFATGGS  129 (162)
Q Consensus        74 ~~~~p~~~~l~~~~~d-----~~v~~wd~~~~-~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~  129 (162)
                      =.|||+|.+|.+.-.|     |.|=+||.+.+ +.+-++..|.-....+ +.+||+.++.+..
T Consensus       119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence            4589999888776443     88999999864 4566777787778888 9999999988754

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.88  E-value=0.0067  Score=28.38  Aligned_cols=30  Identities=27%  Similarity=0.278  Sum_probs=25.5

Q ss_pred             ceEEEEecCCC---CEEEEecCCCeEEEEeCCC
Q psy1859          70 PVNAISFHQEY---NTFATGGSDGYVNIWDGFN   99 (162)
Q Consensus        70 ~v~~~~~~p~~---~~l~~~~~d~~v~~wd~~~   99 (162)
                      ++.++.|+|+.   .+|+..-..+.+.++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            68999999854   4888888889999999995

It contains a characteristic DLL sequence motif.

>KOG4649|consensus

Probab=96.85  E-value=0.067  Score=35.67  Aligned_cols=82  Identities=13%  Similarity=0.009  Sum_probs=53.3

Q ss_pred             CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceE-EEEecCCCCEEEEecCCCeEEEEeCCCccc
Q psy1859          24 NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN-AISFHQEYNTFATGGSDGYVNIWDGFNKKR  102 (162)
Q Consensus        24 ~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~  102 (162)
                      -|++++.|...|.+++  ++.++  ......+..-.          .|. .....+++.++..++.|+..+..|.++...
T Consensus        62 vgdfVV~GCy~g~lYf--l~~~t--Gs~~w~f~~~~----------~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c  127 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYF--LCVKT--GSQIWNFVILE----------TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC  127 (354)
T ss_pred             ECCEEEEEEccCcEEE--EEecc--hhheeeeeehh----------hhccceEEcCCCceEEEecCCCcEEEecccccce
Confidence            4677889999998888  55444  22333322221          122 223467789999999999999999999888


Q ss_pred             eeeeeecccceeEE-EcC
Q psy1859         103 LCQFHRYDTGITSL-FHQ  119 (162)
Q Consensus       103 ~~~~~~~~~~v~~~-~~~  119 (162)
                      +.+.+...+....- ..|
T Consensus       128 VykskcgG~~f~sP~i~~  145 (354)
T KOG4649|consen  128 VYKSKCGGGTFVSPVIAP  145 (354)
T ss_pred             EEecccCCceeccceecC
Confidence            87766544433333 555

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.79  E-value=0.035  Score=37.43  Aligned_cols=93  Identities=15%  Similarity=0.249  Sum_probs=61.0

Q ss_pred             ceEEEEecCCC-CEEEEecCCC-eEEEEeCCCccceeeeeecccc-eeEE--EcCCCCEEEEecCC-----CeEEEEeCC
Q psy1859          70 PVNAISFHQEY-NTFATGGSDG-YVNIWDGFNKKRLCQFHRYDTG-ITSL--FHQEYNTFATGGSD-----GYVNIWDGF  139 (162)
Q Consensus        70 ~v~~~~~~p~~-~~l~~~~~d~-~v~~wd~~~~~~~~~~~~~~~~-v~~~--~~~~~~~l~~~~~d-----~~i~iwd~~  139 (162)
                      ....|+++|.- .-++.+-.-| ...++|....+....+...++. ...-  |||||++|...-.|     |.|-|||.+
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence            35678888876 4444454444 4568999888776666543332 2222  99999999887544     689999998


Q ss_pred             Cce-eeeeeccCCCceeEEEecCC
Q psy1859         140 NKK-RLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       140 ~~~-~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .+- .+..+..|.-....+.|.+|
T Consensus       149 ~~fqrvgE~~t~GiGpHev~lm~D  172 (366)
T COG3490         149 EGFQRVGEFSTHGIGPHEVTLMAD  172 (366)
T ss_pred             cccceecccccCCcCcceeEEecC
Confidence            552 35556666656666666654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.79  E-value=0.092  Score=36.40  Aligned_cols=79  Identities=18%  Similarity=0.243  Sum_probs=51.1

Q ss_pred             eEEEEecCCCCEEEE-ec--C-----C--CeEEEEeCCCccceeeeeecccceeEE-EcCCCC-EEEEe-cCCCeEEEEe
Q psy1859          71 VNAISFHQEYNTFAT-GG--S-----D--GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYN-TFATG-GSDGYVNIWD  137 (162)
Q Consensus        71 v~~~~~~p~~~~l~~-~~--~-----d--~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~-~~d~~i~iwd  137 (162)
                      -.-+++++..+.|.+ -.  .     |  ..|+++|+.+++.+.++.. ..++.++ .+.+.+ +|++. ..++.|.+||
T Consensus       240 ~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D  318 (342)
T PF06433_consen  240 WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD  318 (342)
T ss_dssp             SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred             eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence            445777765533332 11  1     1  3588889999999998874 3457788 888655 55544 5689999999


Q ss_pred             CCCceeeeeeccC
Q psy1859         138 GFNKKRLCQFHRY  150 (162)
Q Consensus       138 ~~~~~~~~~~~~~  150 (162)
                      ..+|+.++++..-
T Consensus       319 ~~tGk~~~~~~~l  331 (342)
T PF06433_consen  319 AATGKLVRSIEQL  331 (342)
T ss_dssp             TTT--EEEEE---
T ss_pred             CcCCcEEeehhcc
Confidence            9999999888643

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.79  E-value=0.053  Score=38.60  Aligned_cols=68  Identities=13%  Similarity=0.060  Sum_probs=47.1

Q ss_pred             CCEEEEecCCCeEEEEeCCCccceeeeeecccc-eeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeecc
Q psy1859          80 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG-ITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR  149 (162)
Q Consensus        80 ~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~-v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  149 (162)
                      +..+..++.++.+..+|..+++.+......... .... .  .+.+++.++.+|.|...|..+|+.+.+...
T Consensus       294 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~  363 (394)
T PRK11138        294 GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV  363 (394)
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence            556777788999999999988765443221111 1111 2  356788889999999999999988776643

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.78  E-value=0.011  Score=44.20  Aligned_cols=87  Identities=11%  Similarity=-0.042  Sum_probs=50.9

Q ss_pred             ceEEEEecCCCCEEEEec------CCC--eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCC----------
Q psy1859          70 PVNAISFHQEYNTFATGG------SDG--YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSD----------  130 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~------~d~--~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d----------  130 (162)
                      .+.+.+++|+|+.++...      .|.  .|++++.. +.. ..+.. ....+.- |+|+|+.+++....          
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            478899999998776554      233  55555642 222 33322 2235556 99998877777433          


Q ss_pred             --CeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         131 --GYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       131 --~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                        +.+.+.++..+....   .....|.++.||||
T Consensus       428 ~~gql~~~~vd~ge~~~---~~~g~Issl~wSpD  458 (591)
T PRK13616        428 ATGQLARTPVDASAVAS---RVPGPISELQLSRD  458 (591)
T ss_pred             CCceEEEEeccCchhhh---ccCCCcCeEEECCC
Confidence              233333443332221   23457999999997

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.77  E-value=0.11  Score=36.95  Aligned_cols=117  Identities=12%  Similarity=0.134  Sum_probs=73.9

Q ss_pred             EEEEEEeeCCCeEEEEcC---CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEE-ecCCCe
Q psy1859          16 TRCIKCFPNKQGYVLSSI---EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFAT-GGSDGY   91 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~-~~~d~~   91 (162)
                      ...++++|+++.+.++..   ++++.+  +|..+  .+.......-..         + ..++++|++..+.. -..++.
T Consensus       118 P~~~~~~~~~~~vYV~n~~~~~~~vsv--id~~t--~~~~~~~~vG~~---------P-~~~a~~p~g~~vyv~~~~~~~  183 (381)
T COG3391         118 PVGLAVDPDGKYVYVANAGNGNNTVSV--IDAAT--NKVTATIPVGNT---------P-TGVAVDPDGNKVYVTNSDDNT  183 (381)
T ss_pred             CceEEECCCCCEEEEEecccCCceEEE--EeCCC--CeEEEEEecCCC---------c-ceEEECCCCCeEEEEecCCCe
Confidence            356889999887777655   455555  77765  333332111111         3 78999999975554 457899


Q ss_pred             EEEEeCCCcccee-e---eeecccceeEE-EcCCCCEEEEecCC---CeEEEEeCCCceeeee
Q psy1859          92 VNIWDGFNKKRLC-Q---FHRYDTGITSL-FHQEYNTFATGGSD---GYVNIWDGFNKKRLCQ  146 (162)
Q Consensus        92 v~~wd~~~~~~~~-~---~~~~~~~v~~~-~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~  146 (162)
                      +.+.|.......+ .   ..........+ ++|+|.++......   +.+...|..++.....
T Consensus       184 v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~  246 (381)
T COG3391         184 VSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT  246 (381)
T ss_pred             EEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence            9999976654442 1   01122333455 89999977776544   5899999888765543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.69  E-value=0.059  Score=37.06  Aligned_cols=101  Identities=14%  Similarity=0.057  Sum_probs=61.5

Q ss_pred             EEEEEeeCCCeEEEEcC-CCcEEEEEecCCcc---cceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC-e
Q psy1859          17 RCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPE---MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG-Y   91 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~-~g~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~-~   91 (162)
                      ..|+||||++.++.+.. .+.+.-+.++....   .......+..         ..+..-.++...+|.+.+++..+| .
T Consensus       166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~---------~~G~PDG~~vDadG~lw~~a~~~g~~  236 (307)
T COG3386         166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE---------EPGLPDGMAVDADGNLWVAAVWGGGR  236 (307)
T ss_pred             CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccC---------CCCCCCceEEeCCCCEEEecccCCce
Confidence            45999999988877744 46666666663210   0111111111         112456777888888876555554 9


Q ss_pred             EEEEeCCCccceeeeeecccceeEE-E-cCCCCEEEEe
Q psy1859          92 VNIWDGFNKKRLCQFHRYDTGITSL-F-HQEYNTFATG  127 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~v~~~-~-~~~~~~l~~~  127 (162)
                      |..|+.. ++++..+.-....++++ | -|+.+.|+..
T Consensus       237 v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iT  273 (307)
T COG3386         237 VVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYIT  273 (307)
T ss_pred             EEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEE
Confidence            9999988 88888877665666666 4 3455544443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.69  E-value=0.013  Score=27.39  Aligned_cols=30  Identities=23%  Similarity=0.261  Sum_probs=24.9

Q ss_pred             ceeEE-EcCC-C--CEEEEecCCCeEEEEeCCCc
Q psy1859         112 GITSL-FHQE-Y--NTFATGGSDGYVNIWDGFNK  141 (162)
Q Consensus       112 ~v~~~-~~~~-~--~~l~~~~~d~~i~iwd~~~~  141 (162)
                      .+.++ |+|+ +  .+|+.+-.-+.+.|+|++++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            57788 9984 4  58999988999999999953

It contains a characteristic DLL sequence motif.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.69  E-value=0.096  Score=35.20  Aligned_cols=121  Identities=13%  Similarity=0.088  Sum_probs=66.3

Q ss_pred             eCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccc
Q psy1859          23 PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR  102 (162)
Q Consensus        23 ~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~  102 (162)
                      ..++.++.|+.+| +.+++.+... ......    ..         ..|..+..-|+-+.+++-+ |+.+.++++..-..
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~-~~~~i~----~~---------~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~   68 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPS-KPTRIL----KL---------SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEP   68 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCc-cceeEe----ec---------ceEEEEEEecccCEEEEEc-CCccEEEEchhhcc
Confidence            4578899999888 6665551111 011111    11         1488888888877766664 59999999886433


Q ss_pred             eeeee-----------ecccceeEE--Ec----CCC-CEEEEecCCCeEEEEeCCCc-----eeeeeeccCCCceeEEEe
Q psy1859         103 LCQFH-----------RYDTGITSL--FH----QEY-NTFATGGSDGYVNIWDGFNK-----KRLCQFHRYDTGITSLCF  159 (162)
Q Consensus       103 ~~~~~-----------~~~~~v~~~--~~----~~~-~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~v~~  159 (162)
                      .....           ..-.....+  |.    ..+ ..|+.+ ....|.+|.....     +....+. -...+.+++|
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~  146 (275)
T PF00780_consen   69 VSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAF  146 (275)
T ss_pred             ccccccccccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEE
Confidence            32110           001111112  44    233 344444 4448888877542     3444444 3456777877


Q ss_pred             cC
Q psy1859         160 SY  161 (162)
Q Consensus       160 ~p  161 (162)
                      .+
T Consensus       147 ~~  148 (275)
T PF00780_consen  147 LG  148 (275)
T ss_pred             eC
Confidence            64

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.67  E-value=0.094  Score=39.51  Aligned_cols=106  Identities=11%  Similarity=0.109  Sum_probs=62.4

Q ss_pred             EEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEe--cCCCCEEEEecCCCeEEEEe
Q psy1859          19 IKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF--HQEYNTFATGGSDGYVNIWD   96 (162)
Q Consensus        19 i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~~~~~d~~v~~wd   96 (162)
                      +..+.-++..++-+....+.||+.....  .+....+.          ..+.|.+++|  .|+++.+++.+....|.++.
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~--lE~~~~f~----------~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGV--LEYEESFS----------EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT  102 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcE--EEEeeeec----------CCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence            3444444444444445567785543322  22222221          2236999999  56788888888999999885


Q ss_pred             CC-----C----ccceeeee--ecc-cceeEE-EcCCCCEEEEecCCCeEEEEeC
Q psy1859          97 GF-----N----KKRLCQFH--RYD-TGITSL-FHQEYNTFATGGSDGYVNIWDG  138 (162)
Q Consensus        97 ~~-----~----~~~~~~~~--~~~-~~v~~~-~~~~~~~l~~~~~d~~i~iwd~  138 (162)
                      -.     +    ..+++.+.  .+. .+|.+. |-++|.+++.+  ++.+.|+|-
T Consensus       103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence            42     1    13344443  232 567777 99999766655  346777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.64  E-value=0.071  Score=37.95  Aligned_cols=67  Identities=10%  Similarity=-0.016  Sum_probs=47.9

Q ss_pred             CCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859          80 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        80 ~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      +..++.++.++.+..+|.++|+.+.+..... .+.+- .- .+..++.+..++.+.-+|.++|+.+..+.
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~  187 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVN  187 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence            4566778889999999999998877665332 22221 11 24467777888999999999998877664

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.60  E-value=0.11  Score=40.05  Aligned_cols=91  Identities=14%  Similarity=0.130  Sum_probs=56.2

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEE---ecCCc--ccceeeeeeeeeeecc--CcccceeceEEEEecCCC--
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEY---LDTGP--EMQKMKYAFKCHRIKE--DGIEKIYPVNAISFHQEY--   80 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~---~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~p~~--   80 (162)
                      .+....|..|..+|+|..++..+..|-..+.-   |-...  ...+.....+......  ........|..+.|||.+  
T Consensus        81 ~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~  160 (717)
T PF10168_consen   81 NPPLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES  160 (717)
T ss_pred             CCCceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence            45667889999999999999988876555421   10000  0001111111111000  111234479999999974  


Q ss_pred             -CEEEEecCCCeEEEEeCCCc
Q psy1859          81 -NTFATGGSDGYVNIWDGFNK  100 (162)
Q Consensus        81 -~~l~~~~~d~~v~~wd~~~~  100 (162)
                       ..|+.-+.|+.+++||+...
T Consensus       161 ~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  161 DSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CCeEEEEecCCEEEEEecCCC
Confidence             78889999999999999864

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4499|consensus

Probab=96.50  E-value=0.12  Score=33.98  Aligned_cols=105  Identities=14%  Similarity=0.118  Sum_probs=69.2

Q ss_pred             EEEEeeCCCeEEE-EcCCCcEEEEEecCCccc---ceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          18 CIKCFPNKQGYVL-SSIEGRAAVEYLDTGPEM---QKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        18 ~i~~~~~~~~l~~-~~~~g~i~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      .++|+.+.+.+.. -+.+-+|.-|++|..++.   .+.++.++..+..+    +. ..-.++..-+|++++++-..+.|.
T Consensus       162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e----~~-~PDGm~ID~eG~L~Va~~ng~~V~  236 (310)
T KOG4499|consen  162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFE----SL-EPDGMTIDTEGNLYVATFNGGTVQ  236 (310)
T ss_pred             cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcC----CC-CCCcceEccCCcEEEEEecCcEEE
Confidence            4678877665554 466667777888876532   33444444322111    11 123455566889999999999999


Q ss_pred             EEeCCCccceeeeeecccceeEE-EcC-CCCEEEEe
Q psy1859          94 IWDGFNKKRLCQFHRYDTGITSL-FHQ-EYNTFATG  127 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~  127 (162)
                      ..|..+|+.+.++.-....++++ |-- +-..+++.
T Consensus       237 ~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT  272 (310)
T KOG4499|consen  237 KVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT  272 (310)
T ss_pred             EECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence            99999999999988878888888 653 33344433

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.46  E-value=0.11  Score=35.28  Aligned_cols=119  Identities=8%  Similarity=0.058  Sum_probs=76.7

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      .......+.++.|+|+.+.|.+..+...-.|+ ++... ..-....+.+-.          ....+.+..++++.++--.
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVE-lt~~G-dlirtiPL~g~~----------DpE~Ieyig~n~fvi~dER  148 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVE-LTKEG-DLIRTIPLTGFS----------DPETIEYIGGNQFVIVDER  148 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEE-EecCC-ceEEEecccccC----------ChhHeEEecCCEEEEEehh
Confidence            34555668899999999988888777766654 34321 122223333322          2456777777777778888


Q ss_pred             CCeEEEEeCCCcccee-----eee-----ecccceeEE-EcCCCCEEEEecCCCeEEEEeCC
Q psy1859          89 DGYVNIWDGFNKKRLC-----QFH-----RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGF  139 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~-----~~~-----~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~  139 (162)
                      +..+.++.+.....+.     .+.     ..+.....+ |+|....|+.+-+-.-+.|+.+.
T Consensus       149 ~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         149 DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            8999988777542221     111     113455667 99988888888777777777665

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.41  E-value=0.17  Score=34.74  Aligned_cols=137  Identities=15%  Similarity=0.112  Sum_probs=61.9

Q ss_pred             eeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859           8 RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      ......+.+..+.-+++|++++++. .|.+.+ .++...........   ...        ..|.+|.|.|++.+.+.+ 
T Consensus       139 ~~~~~~gs~~~~~r~~dG~~vavs~-~G~~~~-s~~~G~~~w~~~~r---~~~--------~riq~~gf~~~~~lw~~~-  204 (302)
T PF14870_consen  139 VVSETSGSINDITRSSDGRYVAVSS-RGNFYS-SWDPGQTTWQPHNR---NSS--------RRIQSMGFSPDGNLWMLA-  204 (302)
T ss_dssp             EE-S----EEEEEE-TTS-EEEEET-TSSEEE-EE-TT-SS-EEEE-----SS--------S-EEEEEE-TTS-EEEEE-
T ss_pred             cccCCcceeEeEEECCCCcEEEEEC-cccEEE-EecCCCccceEEcc---Ccc--------ceehhceecCCCCEEEEe-
Confidence            3444556677788889999877764 455443 25543211111111   111        169999999998776655 


Q ss_pred             CCCeEEEEeC-CCcccee----eeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCcee---eeeeccCCCceeEEE
Q psy1859          88 SDGYVNIWDG-FNKKRLC----QFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKR---LCQFHRYDTGITSLC  158 (162)
Q Consensus        88 ~d~~v~~wd~-~~~~~~~----~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~v~  158 (162)
                      ..|.|+.=+. ...+...    .+....-.+..+ |.+++...++|+.. .+. .....|+.   ......-...++.|.
T Consensus       205 ~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l~-~S~DgGktW~~~~~~~~~~~n~~~i~  282 (302)
T PF14870_consen  205 RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TLL-VSTDGGKTWQKDRVGENVPSNLYRIV  282 (302)
T ss_dssp             TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--EE-EESSTTSS-EE-GGGTTSSS---EEE
T ss_pred             CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cEE-EeCCCCccceECccccCCCCceEEEE
Confidence            8888888772 2222111    111222346778 99888777766544 332 34444432   111122344566666


Q ss_pred             ec
Q psy1859         159 FS  160 (162)
Q Consensus       159 ~~  160 (162)
                      |.
T Consensus       283 f~  284 (302)
T PF14870_consen  283 FV  284 (302)
T ss_dssp             EE
T ss_pred             Ec
Confidence            64

>KOG1008|consensus

Probab=96.38  E-value=0.0017  Score=47.78  Aligned_cols=108  Identities=15%  Similarity=0.177  Sum_probs=65.3

Q ss_pred             EEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC-CCEEEEecCCCeEEEE
Q psy1859          17 RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE-YNTFATGGSDGYVNIW   95 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~~v~~w   95 (162)
                      .+++|-.+.+.+++|.....+.+.++....  .... .+  .+         ..+..+...|. ..++++-. |+.+.+|
T Consensus       158 ns~cwlrd~klvlaGm~sr~~~ifdlRqs~--~~~~-sv--nT---------k~vqG~tVdp~~~nY~cs~~-dg~iAiw  222 (783)
T KOG1008|consen  158 NSVCWLRDTKLVLAGMTSRSVHIFDLRQSL--DSVS-SV--NT---------KYVQGITVDPFSPNYFCSNS-DGDIAIW  222 (783)
T ss_pred             cccccccCcchhhcccccchhhhhhhhhhh--hhhh-hh--hh---------hhcccceecCCCCCceeccc-cCceeec
Confidence            477888788888888888888884433111  1111 11  11         14667777883 46666655 9999999


Q ss_pred             e-CCC-ccceeeeeeccc----ceeEE-EcCC-CCEEEEec-CCCeEEEEeCC
Q psy1859          96 D-GFN-KKRLCQFHRYDT----GITSL-FHQE-YNTFATGG-SDGYVNIWDGF  139 (162)
Q Consensus        96 d-~~~-~~~~~~~~~~~~----~v~~~-~~~~-~~~l~~~~-~d~~i~iwd~~  139 (162)
                      | .++ ..++..+.....    .+..+ |.|. ...+++.. +.++|+.+|+.
T Consensus       223 D~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  223 DTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            9 443 234443332222    37777 8882 22444444 55789999986

>KOG2395|consensus

Probab=96.34  E-value=0.06  Score=39.29  Aligned_cols=66  Identities=9%  Similarity=0.180  Sum_probs=48.6

Q ss_pred             eEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeC
Q psy1859          71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDG  138 (162)
Q Consensus        71 v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~  138 (162)
                      ..|.+-..+| .+++|+.+|.|++||--.......+++-+.+|..+ .+.+|++++..+.. .+.+-++
T Consensus       433 Fsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t-yLlLi~t  499 (644)
T KOG2395|consen  433 FSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT-YLLLIDT  499 (644)
T ss_pred             cceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc-EEEEEEE
Confidence            4555555444 78899999999999974444455677888999999 99999988777544 5555554

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=96.30  E-value=0.034  Score=25.58  Aligned_cols=41  Identities=10%  Similarity=0.030  Sum_probs=29.6

Q ss_pred             CCCCEEEEec-CCCeEEEEeCCCceeeeeeccCCCceeEEEec
Q psy1859         119 QEYNTFATGG-SDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS  160 (162)
Q Consensus       119 ~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  160 (162)
                      |++++++++. .++.|.++|..+++.+..+.. ......++|+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence            5677777665 578999999999888887765 3345566653

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2395|consensus

Probab=96.30  E-value=0.072  Score=38.93  Aligned_cols=112  Identities=15%  Similarity=0.165  Sum_probs=61.6

Q ss_pred             EEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCC-------EEEEecCCCeEEEEeCCCc-cceeeeee
Q psy1859          37 AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN-------TFATGGSDGYVNIWDGFNK-KRLCQFHR  108 (162)
Q Consensus        37 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-------~l~~~~~d~~v~~wd~~~~-~~~~~~~~  108 (162)
                      -.|+.+|...  .+.+-.-+-+.          .|.-+.+.|+.+       .-+.|-.+..|.-||.+-. +.......
T Consensus       356 ~~l~klDIE~--GKIVeEWk~~~----------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q  423 (644)
T KOG2395|consen  356 DKLYKLDIER--GKIVEEWKFED----------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ  423 (644)
T ss_pred             Ccceeeeccc--ceeeeEeeccC----------CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence            3455566665  33333333332          266677777642       2335667888999999842 21111111


Q ss_pred             ccc-----ceeEEEcCCCCEEEEecCCCeEEEEeCCCcee-eeeeccCCCceeEEEecC
Q psy1859         109 YDT-----GITSLFHQEYNTFATGGSDGYVNIWDGFNKKR-LCQFHRYDTGITSLCFSY  161 (162)
Q Consensus       109 ~~~-----~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~v~~~p  161 (162)
                      ...     ...|.-.-...++++|+.+|.|++||- .+.. -.-+++...+|..|..+.
T Consensus       424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvta  481 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTA  481 (644)
T ss_pred             ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeec
Confidence            111     222221124458999999999999996 4432 223455666777665543

>KOG2377|consensus

Probab=96.25  E-value=0.26  Score=35.67  Aligned_cols=90  Identities=10%  Similarity=0.181  Sum_probs=51.9

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCccce--e--eeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCC-cee
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRL--C--QFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFN-KKR  143 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~--~--~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~-~~~  143 (162)
                      +|.++.||+|.+.+++--.+..|.+++....+..  .  +.+.....|... |+.. .-++.....| +-+|.+.. ++.
T Consensus        68 ~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrs  145 (657)
T KOG2377|consen   68 EIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRS  145 (657)
T ss_pred             ceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhh
Confidence            7999999999999999999999999998543222  1  222223345566 7655 3444443333 34443321 222


Q ss_pred             eeeeccCCCceeEEEecC
Q psy1859         144 LCQFHRYDTGITSLCFSY  161 (162)
Q Consensus       144 ~~~~~~~~~~v~~v~~~p  161 (162)
                      ++..+.|.-.|.-..|+|
T Consensus       146 lRlVks~~~nvnWy~yc~  163 (657)
T KOG2377|consen  146 LRLVKSHNLNVNWYMYCP  163 (657)
T ss_pred             hhhhhhcccCccEEEEcc
Confidence            333344444555555544

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.17  E-value=0.084  Score=37.25  Aligned_cols=90  Identities=6%  Similarity=-0.138  Sum_probs=45.9

Q ss_pred             eEEEEecCCCCEEE-EecCC--CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeee
Q psy1859          71 VNAISFHQEYNTFA-TGGSD--GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQ  146 (162)
Q Consensus        71 v~~~~~~p~~~~l~-~~~~d--~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  146 (162)
                      .+.=+|.++|+.|+ .+..|  ..+.+.|+.+++..+.-.......... ++|+.+.++.......|+-.|+.+++....
T Consensus        38 F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~v  117 (386)
T PF14583_consen   38 FYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVV  117 (386)
T ss_dssp             TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred             ecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEE
Confidence            44456788885555 44445  456677888776544333221222233 788888887766667889999999876555


Q ss_pred             eccCCCceeEEEec
Q psy1859         147 FHRYDTGITSLCFS  160 (162)
Q Consensus       147 ~~~~~~~v~~v~~~  160 (162)
                      +......+....|.
T Consensus       118 y~~p~~~~g~gt~v  131 (386)
T PF14583_consen  118 YEVPDDWKGYGTWV  131 (386)
T ss_dssp             EE--TTEEEEEEEE
T ss_pred             EECCccccccccee
Confidence            65555555445553

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.16  E-value=0.21  Score=33.38  Aligned_cols=134  Identities=12%  Similarity=0.042  Sum_probs=78.0

Q ss_pred             cEEEEEEeeCCCeEEEEc-CCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          15 QTRCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      .+...+++++++.++... .++.-.||....... .....  .+.           .+....|++++...+....+...+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~--~g~-----------~l~~PS~d~~g~~W~v~~~~~~~~   90 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVL--TGG-----------SLTRPSWDPDGWVWTVDDGSGGVR   90 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeec--cCC-----------ccccccccCCCCEEEEEcCCCceE
Confidence            567889999998776655 333344444543321 11111  221           477889999988777777666666


Q ss_pred             EEe-CCCcccee-eeee--cccceeEE-EcCCCCEEEEec---CCCeEEEEeCC---Cc--e----eeeeeccCCCceeE
Q psy1859          94 IWD-GFNKKRLC-QFHR--YDTGITSL-FHQEYNTFATGG---SDGYVNIWDGF---NK--K----RLCQFHRYDTGITS  156 (162)
Q Consensus        94 ~wd-~~~~~~~~-~~~~--~~~~v~~~-~~~~~~~l~~~~---~d~~i~iwd~~---~~--~----~~~~~~~~~~~v~~  156 (162)
                      ++. ...+.... ....  ....|..+ +||||..++...   .++.|.+--+.   .+  .    .+.........+.+
T Consensus        91 ~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~  170 (253)
T PF10647_consen   91 VVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTD  170 (253)
T ss_pred             EEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCccee
Confidence            663 33332211 1111  11278999 999999877765   35677776543   22  1    11212233457889


Q ss_pred             EEecCC
Q psy1859         157 LCFSYD  162 (162)
Q Consensus       157 v~~~pd  162 (162)
                      +.|.++
T Consensus       171 v~W~~~  176 (253)
T PF10647_consen  171 VAWSDD  176 (253)
T ss_pred             eeecCC
Confidence            999875

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2377|consensus

Probab=96.15  E-value=0.11  Score=37.51  Aligned_cols=121  Identities=9%  Similarity=0.092  Sum_probs=72.9

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ..-+|.|.+|.|++|.+.+++--.+.+|.++.+...+  .+.....++....       ..|.+..|+.. .-++..+..
T Consensus        63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~--~~l~~~~~ck~k~-------~~IlGF~W~~s-~e~A~i~~~  132 (657)
T KOG2377|consen   63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN--SQLEYTQECKTKN-------ANILGFCWTSS-TEIAFITDQ  132 (657)
T ss_pred             ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCc--hhhHHHHHhccCc-------ceeEEEEEecC-eeEEEEecC
Confidence            3456899999999999999999999999997775544  2223332332221       14889999876 344444433


Q ss_pred             CeEEEEeCCCc-cceeeeeecccceeEE-EcCCCCEEE--EecCCCeEEEEeCCCc
Q psy1859          90 GYVNIWDGFNK-KRLCQFHRYDTGITSL-FHQEYNTFA--TGGSDGYVNIWDGFNK  141 (162)
Q Consensus        90 ~~v~~wd~~~~-~~~~~~~~~~~~v~~~-~~~~~~~l~--~~~~d~~i~iwd~~~~  141 (162)
                      | +-+|..... +.++..+.+.-.|.-. |.++.+.+.  ++-..+.+.-+.++++
T Consensus       133 G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  133 G-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             C-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            3 455555443 2334444555666666 788776433  3324455554544443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.10  E-value=0.3  Score=34.56  Aligned_cols=102  Identities=14%  Similarity=0.105  Sum_probs=51.0

Q ss_pred             ccEEEEEEeeCCCeEEEEc-----------CCC-cEEEEEecCCcccce--eeeeeeeeeeccCcccceeceEEEEecCC
Q psy1859          14 FQTRCIKCFPNKQGYVLSS-----------IEG-RAAVEYLDTGPEMQK--MKYAFKCHRIKEDGIEKIYPVNAISFHQE   79 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~-----------~~g-~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~   79 (162)
                      .....|+|.++|+.+++-.           ..+ .|.+  ++......+  ....+...-         .....+++.++
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~--l~d~dgdG~~d~~~vfa~~l---------~~p~Gi~~~~~   82 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILI--LEDADGDGKYDKSNVFAEEL---------SMVTGLAVAVG   82 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEE--EEcCCCCCCcceeEEeecCC---------CCccceeEecC
Confidence            3446899999999877743           122 4544  443221111  111111111         13678999998


Q ss_pred             CCEEEEecCCCeEEEEeCCCc-----cc---eeeeeec----ccceeEE-EcCCCCEEEEec
Q psy1859          80 YNTFATGGSDGYVNIWDGFNK-----KR---LCQFHRY----DTGITSL-FHQEYNTFATGG  128 (162)
Q Consensus        80 ~~~l~~~~~d~~v~~wd~~~~-----~~---~~~~~~~----~~~v~~~-~~~~~~~l~~~~  128 (162)
                      + ++++ ......++.|....     +.   +..+...    ......+ |.|||.+.++-+
T Consensus        83 G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        83 G-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             C-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            8 5554 33433334454321     11   1112211    2335567 999998766554

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.99  E-value=0.097  Score=34.18  Aligned_cols=65  Identities=14%  Similarity=0.062  Sum_probs=47.2

Q ss_pred             ecCCCCEEEEecCCCeEEEEeCCCccceeee-------e-------ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCC
Q psy1859          76 FHQEYNTFATGGSDGYVNIWDGFNKKRLCQF-------H-------RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFN  140 (162)
Q Consensus        76 ~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~-------~-------~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~  140 (162)
                      +...+.++++.+.+|.+++||+.+.+.+..-       .       .....|..+ ++.+|.-+++-+ +|....|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4456788999999999999999987654321       1       234567777 888888877765 46788888754


Q ss_pred             c
Q psy1859         141 K  141 (162)
Q Consensus       141 ~  141 (162)
                      +
T Consensus        97 ~   97 (219)
T PF07569_consen   97 G   97 (219)
T ss_pred             c
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.94  E-value=0.23  Score=35.72  Aligned_cols=92  Identities=15%  Similarity=0.179  Sum_probs=52.0

Q ss_pred             cccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeecc--------CcccceeceEEEEecCCCC--E
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE--------DGIEKIYPVNAISFHQEYN--T   82 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~p~~~--~   82 (162)
                      +.++.+|+.+|.+++.++...-|.|.|  +|...  ...+...++.+...        ....+...-....-.+...  +
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~L--iD~~~--~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L  382 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLL--IDVAR--GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL  382 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEE--EECCC--ChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence            345677999999988888766789998  66555  44444445544321        0000000000000000011  3


Q ss_pred             EEEecCCCeEEEEeCCCccceeeeee
Q psy1859          83 FATGGSDGYVNIWDGFNKKRLCQFHR  108 (162)
Q Consensus        83 l~~~~~d~~v~~wd~~~~~~~~~~~~  108 (162)
                      ++-.-..|.|.+|.++.+..+..+..
T Consensus       383 vIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  383 VIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEEeccCCeEEEEecCCCCEEEEEEe
Confidence            34466789999999999888776654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.81  E-value=0.33  Score=34.83  Aligned_cols=92  Identities=15%  Similarity=0.048  Sum_probs=53.6

Q ss_pred             ceEEEEecCCCCEEEEe-cCC----CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCC-----------Ce
Q psy1859          70 PVNAISFHQEYNTFATG-GSD----GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSD-----------GY  132 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~-~~d----~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d-----------~~  132 (162)
                      .+....++|++++++.+ +..    ..++++|+.+++.+...-. ......+ |.++++.|+....+           ..
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            45678899999887754 232    4699999999876543211 1222237 99998876665422           24


Q ss_pred             EEEEeCCCcee--eeeeccCCCc--eeEEEecCC
Q psy1859         133 VNIWDGFNKKR--LCQFHRYDTG--ITSLCFSYD  162 (162)
Q Consensus       133 i~iwd~~~~~~--~~~~~~~~~~--v~~v~~~pd  162 (162)
                      |+.|++.++..  ...+......  ...+..++|
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d  237 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKD  237 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TT
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCc
Confidence            78888876542  2333332222  345555554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.79  E-value=0.33  Score=32.42  Aligned_cols=119  Identities=8%  Similarity=0.061  Sum_probs=66.5

Q ss_pred             eeccccccEEEEEEeeCCCeE-EEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe
Q psy1859           8 RESSLKFQTRCIKCFPNKQGY-VLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG   86 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~~~~~l-~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~   86 (162)
                      ....+...++.|+|+|+.+.| ++....+.|..  ++... .....+.+.+..          -..+|++..++.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~e--ls~~G-~vlr~i~l~g~~----------D~EgI~y~g~~~~vl~~   82 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYE--LSLDG-KVLRRIPLDGFG----------DYEGITYLGNGRYVLSE   82 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEE--EETT---EEEEEE-SS-S----------SEEEEEE-STTEEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEE--EcCCC-CEEEEEeCCCCC----------CceeEEEECCCEEEEEE
Confidence            344555668999999986654 45555555544  66432 222333333322          37788888777777777


Q ss_pred             cCCCeEEEEeCCCcc------ceeeee-----ecccceeEE-EcCCCCEEEEecCCCeEEEEeCC
Q psy1859          87 GSDGYVNIWDGFNKK------RLCQFH-----RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGF  139 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~------~~~~~~-----~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~  139 (162)
                      -.++.+.++++....      ....+.     ..+..+-.+ |+|.++.|+.+.+.....++.++
T Consensus        83 Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~  147 (248)
T PF06977_consen   83 ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVN  147 (248)
T ss_dssp             TTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             cCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEc
Confidence            778999999884421      111221     234457788 99987777777766666666654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=95.73  E-value=0.12  Score=38.46  Aligned_cols=70  Identities=13%  Similarity=0.067  Sum_probs=42.0

Q ss_pred             CCCCEEEEecCCCeEEEEeCCC----ccceee-----------eee-----------cccceeEE-EcC----CCCEEEE
Q psy1859          78 QEYNTFATGGSDGYVNIWDGFN----KKRLCQ-----------FHR-----------YDTGITSL-FHQ----EYNTFAT  126 (162)
Q Consensus        78 p~~~~l~~~~~d~~v~~wd~~~----~~~~~~-----------~~~-----------~~~~v~~~-~~~----~~~~l~~  126 (162)
                      ++...++.+..||.+.......    +.....           +.+           ....+..+ ++.    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4556777788888888776654    111110           000           01223334 555    6789999


Q ss_pred             ecCCCeEEEEeCCCceeeeee
Q psy1859         127 GGSDGYVNIWDGFNKKRLCQF  147 (162)
Q Consensus       127 ~~~d~~i~iwd~~~~~~~~~~  147 (162)
                      .+.|+.+|+||+.+++++.+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999986654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.66  E-value=0.44  Score=32.98  Aligned_cols=115  Identities=17%  Similarity=0.165  Sum_probs=66.7

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      ....++.+.+++-. ++ +++++ .++.+.+|+++..+   +.... .....       ...+.++...  +++++.|..
T Consensus        84 ~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~---~l~~~-~~~~~-------~~~i~sl~~~--~~~I~vgD~  147 (321)
T PF03178_consen   84 STEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSK---TLLKK-AFYDS-------PFYITSLSVF--KNYILVGDA  147 (321)
T ss_dssp             EEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTS---SEEEE-EEE-B-------SSSEEEEEEE--TTEEEEEES
T ss_pred             EEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcc---cchhh-heecc-------eEEEEEEecc--ccEEEEEEc
Confidence            45567888887766 33 44443 34889998887654   11111 11111       0135555544  568999988


Q ss_pred             CCeEEEEeCCC-ccceeeeee--cccceeEE-EcCCCCEEEEecCCCeEEEEeCC
Q psy1859          89 DGYVNIWDGFN-KKRLCQFHR--YDTGITSL-FHQEYNTFATGGSDGYVNIWDGF  139 (162)
Q Consensus        89 d~~v~~wd~~~-~~~~~~~~~--~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~  139 (162)
                      ...+.++..+. ...+..+..  ....++++ |-++++.++.++.+|.+.++...
T Consensus       148 ~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  148 MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            88888775443 222333322  24457777 66555799999999999998765

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2247|consensus

Probab=95.65  E-value=0.0013  Score=46.98  Aligned_cols=128  Identities=12%  Similarity=0.163  Sum_probs=84.2

Q ss_pred             EEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCeEEEEe
Q psy1859          18 CIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWD   96 (162)
Q Consensus        18 ~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v~~wd   96 (162)
                      ...|-|.+..++.+..+-.+..  +|...   +.........          ....++|..++ ..++.+...+.+.+||
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~--YD~ag---q~~le~n~tg----------~aldm~wDkegdvlavlAek~~piylwd  103 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIY--YDKAG---QVILELNPTG----------KALDMAWDKEGDVLAVLAEKTGPIYLWD  103 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHh--hhhhc---ceecccCCch----------hHhhhhhccccchhhhhhhcCCCeeech
Confidence            3557787777888777776666  55432   2222211111          46788898887 4555667889999999


Q ss_pred             CCCccceeeeeecccceeE-E-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          97 GFNKKRLCQFHRYDTGITS-L-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        97 ~~~~~~~~~~~~~~~~v~~-~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      +.+.... .+........+ + |++-+..++.+...+.+.||+-.+.+.+-+.-.|...+++++|.+
T Consensus       104 ~n~eytq-qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l  169 (615)
T KOG2247|consen  104 VNSEYTQ-QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL  169 (615)
T ss_pred             hhhhhHH-HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence            9865322 22222222223 3 999888999999999999999887765554434777888888765

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.59  E-value=0.43  Score=35.17  Aligned_cols=62  Identities=19%  Similarity=0.180  Sum_probs=42.4

Q ss_pred             CCCeEEEEeCCCccceeeeeecc--------cceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeecc
Q psy1859          88 SDGYVNIWDGFNKKRLCQFHRYD--------TGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR  149 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~~~~~~--------~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  149 (162)
                      .+|.+.-.|+.+++.+.+.....        .....- ..-.+..+++++.||.|+.+|.++|+.+.+++.
T Consensus       364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            46788888888887766554320        111111 112567899999999999999999998877653

The alignment model contains an 8-bladed beta-propeller.

>KOG1916|consensus

Probab=95.41  E-value=0.03  Score=43.38  Aligned_cols=134  Identities=14%  Similarity=0.092  Sum_probs=74.0

Q ss_pred             ccccccEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecC---CCCEEEE
Q psy1859          10 SSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ---EYNTFAT   85 (162)
Q Consensus        10 ~~~~~~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~l~~   85 (162)
                      ..+.|.+..+.|-. +...+.  -.-|.+.||+.|.-.++..+.+.+......  +    ..+.-+.|.|   +.-++..
T Consensus       129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~--g----s~~~~V~wcp~~~~~~~ic~  200 (1283)
T KOG1916|consen  129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPY--G----SDPQLVSWCPIAVNKVYICY  200 (1283)
T ss_pred             hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcC--C----CCcceeeecccccccceeee
Confidence            34555666666543 222222  333778888888755333322222211110  1    1234555555   4566777


Q ss_pred             ecCCCeEEEEeCCCccceeeeeeccc----------ceeEE--EcCCCCEEEEecCCCeEEEEeCC-Cc----eeeeeec
Q psy1859          86 GGSDGYVNIWDGFNKKRLCQFHRYDT----------GITSL--FHQEYNTFATGGSDGYVNIWDGF-NK----KRLCQFH  148 (162)
Q Consensus        86 ~~~d~~v~~wd~~~~~~~~~~~~~~~----------~v~~~--~~~~~~~l~~~~~d~~i~iwd~~-~~----~~~~~~~  148 (162)
                      +..++.+++........ ..+..|..          .+..+  .+|||..+++++.||.++.|.+. +|    .+++.++
T Consensus       201 ~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk  279 (1283)
T KOG1916|consen  201 GLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK  279 (1283)
T ss_pred             ccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccC
Confidence            77888888766654321 22223433          23333  78999999999999988888653 23    3555566


Q ss_pred             cCCC
Q psy1859         149 RYDT  152 (162)
Q Consensus       149 ~~~~  152 (162)
                      .|..
T Consensus       280 phd~  283 (1283)
T KOG1916|consen  280 PHDK  283 (1283)
T ss_pred             CCCC
Confidence            6653

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.27  E-value=0.73  Score=33.08  Aligned_cols=113  Identities=12%  Similarity=0.023  Sum_probs=63.6

Q ss_pred             EEEEEeeCCCeEEEE-cCCCc--EEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC-----
Q psy1859          17 RCIKCFPNKQGYVLS-SIEGR--AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-----   88 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~-~~~g~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-----   88 (162)
                      ...+++|++++++.+ +..|.  ..++.+|..+  .+.+.. .....         ....+.|.+++..|+....     
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t--g~~l~d-~i~~~---------~~~~~~W~~d~~~~~y~~~~~~~~  194 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET--GKFLPD-GIENP---------KFSSVSWSDDGKGFFYTRFDEDQR  194 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTT--TEEEEE-EEEEE---------ESEEEEECTTSSEEEEEECSTTTS
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCC--CcCcCC-ccccc---------ccceEEEeCCCCEEEEEEeCcccc
Confidence            356789999998876 33332  3444477665  222211 11111         1234999999876654432     


Q ss_pred             ------CCeEEEEeCCCccce--eeeeecccc--eeEE-EcCCCCEEEEec---CC-CeEEEEeCCCc
Q psy1859          89 ------DGYVNIWDGFNKKRL--CQFHRYDTG--ITSL-FHQEYNTFATGG---SD-GYVNIWDGFNK  141 (162)
Q Consensus        89 ------d~~v~~wd~~~~~~~--~~~~~~~~~--v~~~-~~~~~~~l~~~~---~d-~~i~iwd~~~~  141 (162)
                            ...|+.|.+.+...-  ..+......  ...+ .++++++++...   .+ ..+.+.|+..+
T Consensus       195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence                  334788888765332  333333333  4456 899999877643   23 46888888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.22  E-value=0.69  Score=32.54  Aligned_cols=141  Identities=15%  Similarity=0.095  Sum_probs=70.7

Q ss_pred             cccEEEEEEeeCCCeEEEE--cCC-CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEec-CCC-CEEEEec
Q psy1859          13 KFQTRCIKCFPNKQGYVLS--SIE-GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH-QEY-NTFATGG   87 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~--~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~-~~l~~~~   87 (162)
                      ...+..+.|.++++.++..  ..+ ....+..+|...+..+.+..-....       -...-....|. +++ .++....
T Consensus       183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~-------Wv~~~~~~~~~~~~~~~~l~~s~  255 (353)
T PF00930_consen  183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDG-------WVDVYDPPHFLGPDGNEFLWISE  255 (353)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSS-------SSSSSSEEEE-TTTSSEEEEEEE
T ss_pred             ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCc-------ceeeecccccccCCCCEEEEEEE
Confidence            4556788999998844433  333 3344555666543333333211111       00122244443 666 4444555


Q ss_pred             CCCeEEE--EeCCCccceeeeeecccceeEE--EcCCCCEE-EEecCCC----eEEEEeCC-CceeeeeeccCCCceeEE
Q psy1859          88 SDGYVNI--WDGFNKKRLCQFHRYDTGITSL--FHQEYNTF-ATGGSDG----YVNIWDGF-NKKRLCQFHRYDTGITSL  157 (162)
Q Consensus        88 ~d~~v~~--wd~~~~~~~~~~~~~~~~v~~~--~~~~~~~l-~~~~~d~----~i~iwd~~-~~~~~~~~~~~~~~v~~v  157 (162)
                      .+|.-+|  ++...+. ...+....-.|..+  ++++++.+ +++..++    .|..-++. .+. +..+......-..+
T Consensus       256 ~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~-~~~LT~~~~~~~~~  333 (353)
T PF00930_consen  256 RDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE-PKCLTCEDGDHYSA  333 (353)
T ss_dssp             TTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE-EEESSTTSSTTEEE
T ss_pred             cCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC-eEeccCCCCCceEE
Confidence            7765554  4554443 44555555667666  88877654 4555432    45555666 444 44444333322588


Q ss_pred             EecCC
Q psy1859         158 CFSYD  162 (162)
Q Consensus       158 ~~~pd  162 (162)
                      .||||
T Consensus       334 ~~Spd  338 (353)
T PF00930_consen  334 SFSPD  338 (353)
T ss_dssp             EE-TT
T ss_pred             EECCC
Confidence            99986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.12  E-value=0.84  Score=32.95  Aligned_cols=32  Identities=22%  Similarity=-0.027  Sum_probs=26.6

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCC
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTG   45 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~   45 (162)
                      +++..++.||++++++.-+.+|.+.+..-|..
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~  248 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS  248 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence            57889999999999999999999888655543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.10  E-value=0.8  Score=32.59  Aligned_cols=130  Identities=8%  Similarity=-0.066  Sum_probs=63.0

Q ss_pred             EEeeCCCeEEEE-cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCC
Q psy1859          20 KCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF   98 (162)
Q Consensus        20 ~~~~~~~~l~~~-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~   98 (162)
                      +|.++|+.|+.+ ..+|.-.+|.+|..+....   .+......        ......++|+.+.++-...+..|+-.|++
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~---QLTdg~g~--------~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~  110 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEIT---QLTDGPGD--------NTFGGFLSPDDRALYYVKNGRSLRRVDLD  110 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE---E---SS-B---------TTT-EE-TTSSEEEEEETTTEEEEEETT
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEE---ECccCCCC--------CccceEEecCCCeEEEEECCCeEEEEECC
Confidence            466788766554 5578878888888763222   22222110        12245567888777666566788888998


Q ss_pred             CccceeeeeecccceeEE-E--cCCCCEEEEec---C-------------------CCeEEEEeCCCceeeeeeccCCCc
Q psy1859          99 NKKRLCQFHRYDTGITSL-F--HQEYNTFATGG---S-------------------DGYVNIWDGFNKKRLCQFHRYDTG  153 (162)
Q Consensus        99 ~~~~~~~~~~~~~~v~~~-~--~~~~~~l~~~~---~-------------------d~~i~iwd~~~~~~~~~~~~~~~~  153 (162)
                      +.+....+......+... |  +.|+..++-.-   .                   ...|.--|+++|+.-..+. -...
T Consensus       111 T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~w  189 (386)
T PF14583_consen  111 TLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDW  189 (386)
T ss_dssp             T--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-
T ss_pred             cCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCcc
Confidence            876544444344444333 3  34565544331   1                   2245666777776543333 3445


Q ss_pred             eeEEEecC
Q psy1859         154 ITSLCFSY  161 (162)
Q Consensus       154 v~~v~~~p  161 (162)
                      +..+.|+|
T Consensus       190 lgH~~fsP  197 (386)
T PF14583_consen  190 LGHVQFSP  197 (386)
T ss_dssp             EEEEEEET
T ss_pred             ccCcccCC
Confidence            66677766

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.09  E-value=0.87  Score=32.96  Aligned_cols=89  Identities=10%  Similarity=0.064  Sum_probs=46.4

Q ss_pred             EEEecCCCCEEEEec--C----CCeEEEEeCCCccceeeeeecc---cceeEE-EcCCCCEEEEecC-------------
Q psy1859          73 AISFHQEYNTFATGG--S----DGYVNIWDGFNKKRLCQFHRYD---TGITSL-FHQEYNTFATGGS-------------  129 (162)
Q Consensus        73 ~~~~~p~~~~l~~~~--~----d~~v~~wd~~~~~~~~~~~~~~---~~v~~~-~~~~~~~l~~~~~-------------  129 (162)
                      .+..-|+|+.++++-  .    -|-+.+.|-++.+.........   ..-+.+ |.|..+.++++..             
T Consensus       134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~  213 (461)
T PF05694_consen  134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPE  213 (461)
T ss_dssp             EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TT
T ss_pred             eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChh
Confidence            344457888888752  2    2567788877655555544322   234456 8888888888743             


Q ss_pred             -------CCeEEEEeCCCceeeeeeccCCC--ceeEEEecC
Q psy1859         130 -------DGYVNIWDGFNKKRLCQFHRYDT--GITSLCFSY  161 (162)
Q Consensus       130 -------d~~i~iwd~~~~~~~~~~~~~~~--~v~~v~~~p  161 (162)
                             ...+.+||+.+.+.++++.....  -+..|.|..
T Consensus       214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH  254 (461)
T PF05694_consen  214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLH  254 (461)
T ss_dssp             THHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-S
T ss_pred             HhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecC
Confidence                   34899999999999888864332  244566543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=95.05  E-value=0.71  Score=34.54  Aligned_cols=37  Identities=14%  Similarity=0.159  Sum_probs=27.6

Q ss_pred             ceEEEEecC----CCCEEEEecCCCeEEEEeCCCccceeee
Q psy1859          70 PVNAISFHQ----EYNTFATGGSDGYVNIWDGFNKKRLCQF  106 (162)
Q Consensus        70 ~v~~~~~~p----~~~~l~~~~~d~~v~~wd~~~~~~~~~~  106 (162)
                      .+.++++++    +..++++.+.|+.+++||+.+++++...
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            455666666    5688999999999999999998885543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.52  E-value=1.2  Score=32.95  Aligned_cols=68  Identities=19%  Similarity=0.142  Sum_probs=45.4

Q ss_pred             CEEEEecCCCeEEEEeCCCccceeeeeecccc--eeEE-EcC--CCCEEEEec---------CCCeEEEEeCCCceeeee
Q psy1859          81 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG--ITSL-FHQ--EYNTFATGG---------SDGYVNIWDGFNKKRLCQ  146 (162)
Q Consensus        81 ~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~--v~~~-~~~--~~~~l~~~~---------~d~~i~iwd~~~~~~~~~  146 (162)
                      ..++.++.++.|.-+|.++++.+.++......  -..+ -+|  .+..++.++         .++.+.-+|..+|+.+.+
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            57777888999999999999888766533221  0111 122  224455553         367899999999988777


Q ss_pred             ec
Q psy1859         147 FH  148 (162)
Q Consensus       147 ~~  148 (162)
                      +.
T Consensus       191 ~~  192 (488)
T cd00216         191 FY  192 (488)
T ss_pred             ee
Confidence            64

The alignment model contains an 8-bladed beta-propeller.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.52  E-value=1.8  Score=33.77  Aligned_cols=72  Identities=18%  Similarity=0.139  Sum_probs=49.2

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCC---------Cccc---eeeee--------ecccceeEE-EcCC---CCEEE
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGF---------NKKR---LCQFH--------RYDTGITSL-FHQE---YNTFA  125 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~---------~~~~---~~~~~--------~~~~~v~~~-~~~~---~~~l~  125 (162)
                      .|..+.++|+|.+++..+..|...+.=.+         .++.   ++.+.        .....+..+ |+|.   +..|+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~  165 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV  165 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence            68899999999988888776654443222         1111   11111        223466777 9995   57899


Q ss_pred             EecCCCeEEEEeCCCc
Q psy1859         126 TGGSDGYVNIWDGFNK  141 (162)
Q Consensus       126 ~~~~d~~i~iwd~~~~  141 (162)
                      +-..|+.+++||+...
T Consensus       166 vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  166 VLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEecCCEEEEEecCCC
Confidence            9999999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA02713 hypothetical protein; Provisional

Probab=94.52  E-value=0.34  Score=36.39  Aligned_cols=73  Identities=1%  Similarity=0.025  Sum_probs=43.4

Q ss_pred             CCCEEEEecCC------CeEEEEeCCC-ccc--eeeeeecccceeEEEcCCCCEEEEecCCC--eEEEEeCCCceeeeee
Q psy1859          79 EYNTFATGGSD------GYVNIWDGFN-KKR--LCQFHRYDTGITSLFHQEYNTFATGGSDG--YVNIWDGFNKKRLCQF  147 (162)
Q Consensus        79 ~~~~l~~~~~d------~~v~~wd~~~-~~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~  147 (162)
                      ++++.+.|+.+      ..+..||..+ .+.  +..+.........+ .-++++.++|+.++  .+-.||..+.+-....
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~-~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~  541 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI-LHDNTIMMLHCYESYMLQDTFNVYTYEWNHIC  541 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE-EECCEEEEEeeecceeehhhcCcccccccchh
Confidence            36677777654      2467899886 333  33333222222222 22688889998887  7888898887654444


Q ss_pred             ccCCC
Q psy1859         148 HRYDT  152 (162)
Q Consensus       148 ~~~~~  152 (162)
                      ..|..
T Consensus       542 ~~~~~  546 (557)
T PHA02713        542 HQHSN  546 (557)
T ss_pred             hhcCC
Confidence            44543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.48  E-value=1.9  Score=33.91  Aligned_cols=68  Identities=15%  Similarity=0.068  Sum_probs=46.3

Q ss_pred             CCEEEEecCCCeEEEEeCCCccceeeeeecccce-------------eEE-EcC--CCCEEEEecC----------CCeE
Q psy1859          80 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGI-------------TSL-FHQ--EYNTFATGGS----------DGYV  133 (162)
Q Consensus        80 ~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v-------------~~~-~~~--~~~~l~~~~~----------d~~i  133 (162)
                      +..++.++.|+.+.-.|.++|+.+..+... +.+             ..+ -.|  .+..+++|+.          +|.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            347788889999999999999888765321 111             011 122  2345666642          6889


Q ss_pred             EEEeCCCceeeeeec
Q psy1859         134 NIWDGFNKKRLCQFH  148 (162)
Q Consensus       134 ~iwd~~~~~~~~~~~  148 (162)
                      +-+|.++|+.+..+.
T Consensus       339 ~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       339 RAFDVNTGALVWAWD  353 (764)
T ss_pred             EEEECCCCcEeeEEe
Confidence            999999999888764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.42  E-value=0.96  Score=30.31  Aligned_cols=90  Identities=11%  Similarity=0.029  Sum_probs=53.8

Q ss_pred             ceEEEEecCCCCEEEEec---CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEe-CCCceee
Q psy1859          70 PVNAISFHQEYNTFATGG---SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWD-GFNKKRL  144 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~---~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd-~~~~~~~  144 (162)
                      .+.+.++++++..++...   ....++++..  +....... ....+... |++++...+....+...+++. ..++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            488999999998776655   3344555543  33333222 22355566 999987777766666666663 3333321


Q ss_pred             -eeeccC--CCceeEEEecCC
Q psy1859         145 -CQFHRY--DTGITSLCFSYD  162 (162)
Q Consensus       145 -~~~~~~--~~~v~~v~~~pd  162 (162)
                       ......  ...|.++.+|||
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpD  122 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPD  122 (253)
T ss_pred             eEEecccccCCceEEEEECCC
Confidence             112211  127999999997

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.34  E-value=0.88  Score=29.79  Aligned_cols=85  Identities=9%  Similarity=-0.126  Sum_probs=50.1

Q ss_pred             EEEEeeCCCeEEEEcCCCcEEEEEecCCccccee--eeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEE
Q psy1859          18 CIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKM--KYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW   95 (162)
Q Consensus        18 ~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~w   95 (162)
                      .+....+++++++.+.+|.+++|++...+.....  +..+-.... .........|..+.++.+|.-+++-+ +|..+.|
T Consensus        15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~-~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y   92 (219)
T PF07569_consen   15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP-VSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY   92 (219)
T ss_pred             eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc-cccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence            3445667889999999999999776554311111  000000000 00002333688999998887666654 5778899


Q ss_pred             eCCCcccee
Q psy1859          96 DGFNKKRLC  104 (162)
Q Consensus        96 d~~~~~~~~  104 (162)
                      +..-+..+.
T Consensus        93 ~~~L~~W~~  101 (219)
T PF07569_consen   93 SPDLGCWIR  101 (219)
T ss_pred             ccccceeEE
Confidence            877655444

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.25  E-value=1.6  Score=32.47  Aligned_cols=98  Identities=15%  Similarity=0.126  Sum_probs=53.5

Q ss_pred             EEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-------CEEEEecCCCeEEEEeCCC-
Q psy1859          28 YVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-------NTFATGGSDGYVNIWDGFN-   99 (162)
Q Consensus        28 l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-------~~l~~~~~d~~v~~wd~~~-   99 (162)
                      |+.......-++|..|...  .+.+-....+..          | .+.|.|..       ..-+.|-.+..|.-.|.+- 
T Consensus       481 li~~dg~~~~kLykmDIEr--GkvveeW~~~dd----------v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~  547 (776)
T COG5167         481 LIYLDGGERDKLYKMDIER--GKVVEEWDLKDD----------V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRAR  547 (776)
T ss_pred             eEEecCCCcccceeeeccc--ceeeeEeecCCc----------c-eeecCCchhHHhcCccceEEeecccceEEeccccc
Confidence            3333344444566677766  444443333332          4 67777752       1234555566666666664 


Q ss_pred             ccceeeeeecccceeEE-EcC----CCCEEEEecCCCeEEEEeCC
Q psy1859         100 KKRLCQFHRYDTGITSL-FHQ----EYNTFATGGSDGYVNIWDGF  139 (162)
Q Consensus       100 ~~~~~~~~~~~~~v~~~-~~~----~~~~l~~~~~d~~i~iwd~~  139 (162)
                      |..+... ......+.- |+.    ...++++++..|-|++||--
T Consensus       548 gNKi~v~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi  591 (776)
T COG5167         548 GNKIKVV-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI  591 (776)
T ss_pred             CCceeee-eehhccccccccccccccCceEEEecCCCceeeehhh
Confidence            3222222 122233322 333    56699999999999999954

>KOG1916|consensus

Probab=94.25  E-value=0.13  Score=40.21  Aligned_cols=131  Identities=15%  Similarity=0.155  Sum_probs=70.9

Q ss_pred             eccccccEEEEEEee---CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCccc--ceeceEEEEecCCCCEE
Q psy1859           9 ESSLKFQTRCIKCFP---NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIE--KIYPVNAISFHQEYNTF   83 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~---~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l   83 (162)
                      ..+......-+.|.|   +.-++.++..++++++..|+...  ..   .+..|.......+  ..+.+.--..+|||..|
T Consensus       176 ~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~--~~---l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~  250 (1283)
T KOG1916|consen  176 ITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL--RS---LFRSHSQRVTDMAFFAEGVLKLASLSPDGTVF  250 (1283)
T ss_pred             cCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH--HH---HHHhcCCCcccHHHHhhchhhheeeCCCCcEE
Confidence            333334445566665   45667777888999997776543  21   1222332100000  00011112269999999


Q ss_pred             EEecCCCeEEEEeCCC-----ccceeeeeeccccee-EE-EcCC---------CCEEEEec-CCCeEEEEeCCCceee
Q psy1859          84 ATGGSDGYVNIWDGFN-----KKRLCQFHRYDTGIT-SL-FHQE---------YNTFATGG-SDGYVNIWDGFNKKRL  144 (162)
Q Consensus        84 ~~~~~d~~v~~wd~~~-----~~~~~~~~~~~~~v~-~~-~~~~---------~~~l~~~~-~d~~i~iwd~~~~~~~  144 (162)
                      +....||.+..|.+.-     ..++...+.|.+... |. ++.+         -.++++++ .+..+++|....-+|+
T Consensus       251 a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  251 AWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             EEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            9999999888886642     234455555553222 22 3321         12455554 3456899987655554

>KOG2444|consensus

Probab=94.00  E-value=0.56  Score=30.72  Aligned_cols=72  Identities=15%  Similarity=0.066  Sum_probs=45.9

Q ss_pred             CCEEEEecCCCeEEEEeCCCccceeeeeec-ccceeEE--EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC
Q psy1859          80 YNTFATGGSDGYVNIWDGFNKKRLCQFHRY-DTGITSL--FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD  151 (162)
Q Consensus        80 ~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~-~~~v~~~--~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  151 (162)
                      +..++.|+.+|.|.+|+...........+. ...+.++  --.++.+..+++.|+.|+.|++.-.+.+...-.|.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~  144 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN  144 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence            467889999999999987742222222221 1222222  22355688999999999999998766555444444

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=93.88  E-value=1.5  Score=30.43  Aligned_cols=88  Identities=23%  Similarity=0.139  Sum_probs=47.8

Q ss_pred             eceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeeccc--ceeEEEcCCCCEEEEecCCCeEEEEeCCC-ceeee
Q psy1859          69 YPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT--GITSLFHQEYNTFATGGSDGYVNIWDGFN-KKRLC  145 (162)
Q Consensus        69 ~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~--~v~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~  145 (162)
                      ++|+++.-- ++. ++++ .++.|.+|++...+.+.....+..  .+.++ ...+.+++.|+....+.++..+. +..+.
T Consensus        89 g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl-~~~~~~I~vgD~~~sv~~~~~~~~~~~l~  164 (321)
T PF03178_consen   89 GPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSL-SVFKNYILVGDAMKSVSLLRYDEENNKLI  164 (321)
T ss_dssp             S-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEE-EEETTEEEEEESSSSEEEEEEETTTE-EE
T ss_pred             CcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEE-eccccEEEEEEcccCEEEEEEEccCCEEE
Confidence            378888766 334 4333 358899999987762222222223  44444 33466999998888787774432 22222


Q ss_pred             eec--cCCCceeEEEec
Q psy1859         146 QFH--RYDTGITSLCFS  160 (162)
Q Consensus       146 ~~~--~~~~~v~~v~~~  160 (162)
                      .+.  .....++++.|-
T Consensus       165 ~va~d~~~~~v~~~~~l  181 (321)
T PF03178_consen  165 LVARDYQPRWVTAAEFL  181 (321)
T ss_dssp             EEEEESS-BEEEEEEEE
T ss_pred             EEEecCCCccEEEEEEe
Confidence            221  223456666664

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.72  E-value=1.5  Score=30.05  Aligned_cols=72  Identities=4%  Similarity=-0.043  Sum_probs=52.7

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeec-ccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY-DTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK  141 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~-~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~  141 (162)
                      -+.++.|+|+.+.|.+......-.++=...|+.+.++.-. -.....+ +..+++++++--.++.+.++.+...
T Consensus        87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            4899999999988888877777777766678888877532 2223345 6667778888778888888877644

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.70  E-value=1.7  Score=30.46  Aligned_cols=106  Identities=13%  Similarity=0.081  Sum_probs=51.0

Q ss_pred             EEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC----CCEEEEecCC--
Q psy1859          16 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE----YNTFATGGSD--   89 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~l~~~~~d--   89 (162)
                      -..|+|.|+++.|++ ...|.|.++.  ........+..+.  .   ...........++++|+    +.+.++.+..  
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~--~~g~~~~~v~~~~--~---v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~   75 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD--KDGSLKTPVADLP--E---VFADGERGLLGIAFHPDFASNGYLYVYYTNADE   75 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE--TTTEECEEEEE-T--T---TBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-T
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe--CCCcCcceecccc--c---ccccccCCcccceeccccCCCCEEEEEEEcccC
Confidence            468999999877665 5689988844  2221111221111  0   01112236899999995    4444444321  


Q ss_pred             ------CeEEEEeCCCc-------cce-eeeee---cccceeEE-EcCCCCEEEEecC
Q psy1859          90 ------GYVNIWDGFNK-------KRL-CQFHR---YDTGITSL-FHQEYNTFATGGS  129 (162)
Q Consensus        90 ------~~v~~wd~~~~-------~~~-~~~~~---~~~~v~~~-~~~~~~~l~~~~~  129 (162)
                            ..|.-|.....       +.+ ..+..   .......+ |.|||.+.++.+.
T Consensus        76 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   76 DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence                  23444444322       111 11122   12334457 9999976666554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.64  E-value=1.5  Score=29.63  Aligned_cols=118  Identities=9%  Similarity=0.042  Sum_probs=70.1

Q ss_pred             EEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEe
Q psy1859          17 RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWD   96 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd   96 (162)
                      ..+.+..++.++-+++.-|.=.|..++..++.......+...-          .-..+.... +++..-.-.++...+||
T Consensus        48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~----------FgEGit~~~-d~l~qLTWk~~~~f~yd  116 (264)
T PF05096_consen   48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY----------FGEGITILG-DKLYQLTWKEGTGFVYD  116 (264)
T ss_dssp             EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT------------EEEEEEET-TEEEEEESSSSEEEEEE
T ss_pred             ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc----------cceeEEEEC-CEEEEEEecCCeEEEEc
Confidence            3466767777777888778666666777663222222222111          223444432 34555566889999999


Q ss_pred             CCCccceeeeeecccceeEEEcCCCCEEEEecCCCeEEEEeCCCceeeeee
Q psy1859          97 GFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF  147 (162)
Q Consensus        97 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  147 (162)
                      ..+-+.+.++.-. +.-..+ ..+++.|+.++....|+++|..+.+...++
T Consensus       117 ~~tl~~~~~~~y~-~EGWGL-t~dg~~Li~SDGS~~L~~~dP~~f~~~~~i  165 (264)
T PF05096_consen  117 PNTLKKIGTFPYP-GEGWGL-TSDGKRLIMSDGSSRLYFLDPETFKEVRTI  165 (264)
T ss_dssp             TTTTEEEEEEE-S-SS--EE-EECSSCEEEE-SSSEEEEE-TTT-SEEEEE
T ss_pred             cccceEEEEEecC-CcceEE-EcCCCEEEEECCccceEEECCcccceEEEE
Confidence            9988777776532 222222 347888888888889999998876554444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.58  E-value=1.2  Score=33.37  Aligned_cols=60  Identities=17%  Similarity=0.254  Sum_probs=39.5

Q ss_pred             CeEEEEeCCCccceeeeeecccceeEEEcCCCCEEEEecCCCeEEEEeCCCceeeeeecc
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR  149 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  149 (162)
                      +.|.-+|+.+++...+.............-.+.+++.++.+|.++.+|.++|+.+..++.
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence            457777777776665544221111111122456778888899999999999998887754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.49  E-value=1.7  Score=30.00  Aligned_cols=67  Identities=16%  Similarity=0.231  Sum_probs=42.5

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEe
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWD  137 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd  137 (162)
                      .+..+.-+++|.+++++.....+.-||.-.......-......+..+ |.|++.+.+++ ..|.|+.=+
T Consensus       146 s~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~  213 (302)
T PF14870_consen  146 SINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD  213 (302)
T ss_dssp             -EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred             eeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence            57888889999999888877777788865432222222345778899 99998877765 888888877

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.36  E-value=2.6  Score=31.64  Aligned_cols=67  Identities=21%  Similarity=0.128  Sum_probs=44.1

Q ss_pred             CEEEEecCCCeEEEEeCCCccceeeeeecc----cceeEE-EcCCCCEEEEec------CCCeEEEEeCCCceeeeeec
Q psy1859          81 NTFATGGSDGYVNIWDGFNKKRLCQFHRYD----TGITSL-FHQEYNTFATGG------SDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        81 ~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~----~~v~~~-~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~  148 (162)
                      ..++.++.|+.+.-.|.++|+.+.......    ..+++. .--++ .++++.      .+|.|.-+|.++|+.+.++.
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            456778889999999999998876654211    112221 11134 444443      26899999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.36  E-value=1  Score=34.70  Aligned_cols=123  Identities=11%  Similarity=0.019  Sum_probs=67.5

Q ss_pred             EEEEEEee--CCCeEEEEcCCCcEEEEEecCC-----cccceeee-eeeeeeeccCcccceeceEEEEec--CCCCEEEE
Q psy1859          16 TRCIKCFP--NKQGYVLSSIEGRAAVEYLDTG-----PEMQKMKY-AFKCHRIKEDGIEKIYPVNAISFH--QEYNTFAT   85 (162)
Q Consensus        16 ~~~i~~~~--~~~~l~~~~~~g~i~i~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~l~~   85 (162)
                      |..|....  ....|++|.+||.|.+|..+.-     ........ .................+.+++++  ...+++|+
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV  182 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV  182 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence            44444333  3567888999999999754210     00000000 000000000111123368899998  77789999


Q ss_pred             ecCCCeEEEEeCCCc--ccee-eeeecccceeEE-EcC-----CCC-EEEEecCCCeEEEEeC
Q psy1859          86 GGSDGYVNIWDGFNK--KRLC-QFHRYDTGITSL-FHQ-----EYN-TFATGGSDGYVNIWDG  138 (162)
Q Consensus        86 ~~~d~~v~~wd~~~~--~~~~-~~~~~~~~v~~~-~~~-----~~~-~l~~~~~d~~i~iwd~  138 (162)
                      ++....|.||-....  +... .-..+...|-++ |-+     +|. ++++++-.|.+.+|++
T Consensus       183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            998888888755432  1111 011234456666 554     232 7888888999888877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.31  E-value=2.1  Score=31.12  Aligned_cols=31  Identities=16%  Similarity=0.113  Sum_probs=19.6

Q ss_pred             cceeEE-EcCCCCEEEEec-CCCeEEEEeCCCc
Q psy1859         111 TGITSL-FHQEYNTFATGG-SDGYVNIWDGFNK  141 (162)
Q Consensus       111 ~~v~~~-~~~~~~~l~~~~-~d~~i~iwd~~~~  141 (162)
                      .-++.+ +|.|.++|..++ .+|.|+.||+...
T Consensus       312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             -----EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             CceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence            446888 999999988877 6899999999753

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1897|consensus

Probab=93.17  E-value=3.7  Score=32.92  Aligned_cols=84  Identities=13%  Similarity=0.185  Sum_probs=52.1

Q ss_pred             ceEEEEecCC-CCEEEEecC----------CCeEEEEeCCCccceeeeee--cccceeEE--EcCCCCEEEEecCCCeEE
Q psy1859          70 PVNAISFHQE-YNTFATGGS----------DGYVNIWDGFNKKRLCQFHR--YDTGITSL--FHQEYNTFATGGSDGYVN  134 (162)
Q Consensus        70 ~v~~~~~~p~-~~~l~~~~~----------d~~v~~wd~~~~~~~~~~~~--~~~~v~~~--~~~~~~~l~~~~~d~~i~  134 (162)
                      .+.++.|..+ +.++++|+.          .|.|.++.+...+.++....  -.+.+.++  |  +|+++|.-  ...|+
T Consensus       776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~I--n~~vr  851 (1096)
T KOG1897|consen  776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAGI--NQSVR  851 (1096)
T ss_pred             eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEec--CcEEE
Confidence            4666678777 567776643          47888888776444443322  24555555  5  57666554  55899


Q ss_pred             EEeCCCceeeeeeccCCCceeEE
Q psy1859         135 IWDGFNKKRLCQFHRYDTGITSL  157 (162)
Q Consensus       135 iwd~~~~~~~~~~~~~~~~v~~v  157 (162)
                      +|+..+.+.++.-..+..++..+
T Consensus       852 Lye~t~~~eLr~e~~~~~~~~aL  874 (1096)
T KOG1897|consen  852 LYEWTTERELRIECNISNPIIAL  874 (1096)
T ss_pred             EEEccccceehhhhcccCCeEEE
Confidence            99998876665554555554443

>smart00564 PQQ beta-propeller repeat

Probab=92.93  E-value=0.37  Score=20.68  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=20.9

Q ss_pred             EEEEecCCCeEEEEeCCCceeeeee
Q psy1859         123 TFATGGSDGYVNIWDGFNKKRLCQF  147 (162)
Q Consensus       123 ~l~~~~~d~~i~iwd~~~~~~~~~~  147 (162)
                      .+++++.++.+..+|.++|+.+.++
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            6788889999999999999877653

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=92.72  E-value=2.8  Score=30.34  Aligned_cols=82  Identities=12%  Similarity=0.083  Sum_probs=50.4

Q ss_pred             ecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccC-CCc
Q psy1859          76 FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY-DTG  153 (162)
Q Consensus        76 ~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~  153 (162)
                      ++.+....+....++.+.+.+-...+.   +. ..+++..+ .||+|++++.-..+|.+.+....-.+.+..+... ...
T Consensus       186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~  261 (410)
T PF04841_consen  186 LSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSP  261 (410)
T ss_pred             eecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCC
Confidence            334444444444455555443322111   21 24578888 9999999999999999999887655555555433 345


Q ss_pred             eeEEEecC
Q psy1859         154 ITSLCFSY  161 (162)
Q Consensus       154 v~~v~~~p  161 (162)
                      ...+.|+.
T Consensus       262 p~~~~WCG  269 (410)
T PF04841_consen  262 PKQMAWCG  269 (410)
T ss_pred             CcEEEEEC
Confidence            67777764

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.68  E-value=1.6  Score=27.38  Aligned_cols=30  Identities=13%  Similarity=0.130  Sum_probs=25.0

Q ss_pred             ceEEEEecCCC------CEEEEecCCCeEEEEeCCC
Q psy1859          70 PVNAISFHQEY------NTFATGGSDGYVNIWDGFN   99 (162)
Q Consensus        70 ~v~~~~~~p~~------~~l~~~~~d~~v~~wd~~~   99 (162)
                      .+.+++|||.|      .+|++.+.++.|.+|....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            78999999954      3788889999999998663

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=92.64  E-value=1.3  Score=26.47  Aligned_cols=83  Identities=16%  Similarity=0.237  Sum_probs=50.1

Q ss_pred             EEecCCCCEEEEecCCCeEEEEeCCCcc--------ceeeeeecccceeEE----EcC--CCCEEEEecCCCeEEEEeCC
Q psy1859          74 ISFHQEYNTFATGGSDGYVNIWDGFNKK--------RLCQFHRYDTGITSL----FHQ--EYNTFATGGSDGYVNIWDGF  139 (162)
Q Consensus        74 ~~~~p~~~~l~~~~~d~~v~~wd~~~~~--------~~~~~~~~~~~v~~~----~~~--~~~~l~~~~~d~~i~iwd~~  139 (162)
                      -.|......|+.++.-++|.+.+.....        .+..+ .-...++++    |.|  +...|+.|+ ...|..||+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence            3455556678888888999999876432        22333 345566666    654  344666665 4578999997


Q ss_pred             CceeeeeeccCCCceeEEEe
Q psy1859         140 NKKRLCQFHRYDTGITSLCF  159 (162)
Q Consensus       140 ~~~~~~~~~~~~~~v~~v~~  159 (162)
                      ...-+- ++.-++.|.++.+
T Consensus        82 ~N~d~F-yke~~DGvn~i~~  100 (136)
T PF14781_consen   82 NNSDLF-YKEVPDGVNAIVI  100 (136)
T ss_pred             cCchhh-hhhCccceeEEEE
Confidence            654332 2223345665554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.61  E-value=0.8  Score=34.31  Aligned_cols=69  Identities=13%  Similarity=0.190  Sum_probs=39.7

Q ss_pred             EEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEE-ecCCCeEEEEeC
Q psy1859          19 IKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFAT-GGSDGYVNIWDG   97 (162)
Q Consensus        19 i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~-~~~d~~v~~wd~   97 (162)
                      ..|+|....|++-+....-.+......+  .+....++...          .|.|..|.+||+.|+. .+..-.-++||-
T Consensus       118 CVWHPk~~iL~VLT~~dvSV~~sV~~d~--srVkaDi~~~G----------~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  118 CVWHPKKAILTVLTARDVSVLPSVHCDS--SRVKADIKTSG----------LIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             ccccCCCceEEEEecCceeEeeeeeeCC--ceEEEeccCCc----------eEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            5688877776654443332232222222  33333333333          5999999999965554 455556678986


Q ss_pred             CC
Q psy1859          98 FN   99 (162)
Q Consensus        98 ~~   99 (162)
                      ..
T Consensus       186 ~q  187 (671)
T PF15390_consen  186 AQ  187 (671)
T ss_pred             ch
Confidence            54

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.49  E-value=0.51  Score=21.23  Aligned_cols=27  Identities=11%  Similarity=0.090  Sum_probs=16.2

Q ss_pred             ccceeEE-EcCCCCEEEEec-CC--CeEEEE
Q psy1859         110 DTGITSL-FHQEYNTFATGG-SD--GYVNIW  136 (162)
Q Consensus       110 ~~~v~~~-~~~~~~~l~~~~-~d--~~i~iw  136 (162)
                      ....... |+|||++|+..+ .+  |.-.||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3344555 999999877665 44  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.49  E-value=3.9  Score=31.38  Aligned_cols=90  Identities=17%  Similarity=0.090  Sum_probs=57.0

Q ss_pred             EEEecCCCCEEEEecCCCeEEEEeCCCccceeeee-ecccceeEE---EcCCCCEEEEecCCCeEEEEeCC-----Cc--
Q psy1859          73 AISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH-RYDTGITSL---FHQEYNTFATGGSDGYVNIWDGF-----NK--  141 (162)
Q Consensus        73 ~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~-~~~~~v~~~---~~~~~~~l~~~~~d~~i~iwd~~-----~~--  141 (162)
                      -+.-+.-++..++-+....+.|||.+.+.....-. .....|.++   ..|+|+.+.+.+....|.++...     +.  
T Consensus        34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p  113 (631)
T PF12234_consen   34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP  113 (631)
T ss_pred             eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence            34344445555555566789999999876433222 346788888   45699999999999999998642     11  


Q ss_pred             --eeeeee--ccCC-CceeEEEecCC
Q psy1859         142 --KRLCQF--HRYD-TGITSLCFSYD  162 (162)
Q Consensus       142 --~~~~~~--~~~~-~~v~~v~~~pd  162 (162)
                        ..+..+  ..++ .+|.+..|-+|
T Consensus       114 ~w~~i~~i~i~~~T~h~Igds~Wl~~  139 (631)
T PF12234_consen  114 SWAPIRKIDISSHTPHPIGDSIWLKD  139 (631)
T ss_pred             ccceeEEEEeecCCCCCccceeEecC
Confidence              123222  2333 46777887654

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK10115 protease 2; Provisional

Probab=92.09  E-value=3.6  Score=32.02  Aligned_cols=69  Identities=7%  Similarity=-0.086  Sum_probs=46.0

Q ss_pred             ceEEEEecCCCCEEEEec-----CCCeEEEEeCCCccceee-eeecccceeEE-EcCCCCEEEEecCC------CeEEEE
Q psy1859          70 PVNAISFHQEYNTFATGG-----SDGYVNIWDGFNKKRLCQ-FHRYDTGITSL-FHQEYNTFATGGSD------GYVNIW  136 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~-----~d~~v~~wd~~~~~~~~~-~~~~~~~v~~~-~~~~~~~l~~~~~d------~~i~iw  136 (162)
                      .+..+.|+|++++|+.+.     ....+++.|+.++..+.. +..   .-..+ |.+|++.|+....+      ..|+.+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            577899999998777543     235688889987764322 221   11347 99998866665432      368888


Q ss_pred             eCCCc
Q psy1859         137 DGFNK  141 (162)
Q Consensus       137 d~~~~  141 (162)
                      ++.++
T Consensus       205 ~lgt~  209 (686)
T PRK10115        205 TIGTP  209 (686)
T ss_pred             ECCCC
Confidence            88877

>KOG4460|consensus

Probab=91.95  E-value=4.1  Score=30.49  Aligned_cols=92  Identities=13%  Similarity=0.127  Sum_probs=55.0

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEE---ecCCc--ccceeeeeeeeeeec-c-CcccceeceEEEEecCCC--
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEY---LDTGP--EMQKMKYAFKCHRIK-E-DGIEKIYPVNAISFHQEY--   80 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~---~~~~~--~~~~~~~~~~~~~~~-~-~~~~~~~~v~~~~~~p~~--   80 (162)
                      ......+..+..++.|..++.++.+|.+..+-   |....  ...+.....+..... + +-....-.+...+|+|+.  
T Consensus       100 ~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~  179 (741)
T KOG4460|consen  100 NPVLFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSIL  179 (741)
T ss_pred             CcceEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccC
Confidence            44556778888999999999999999876643   32211  001111111100000 0 000011147789999985  


Q ss_pred             -CEEEEecCCCeEEEEeCCCcc
Q psy1859          81 -NTFATGGSDGYVNIWDGFNKK  101 (162)
Q Consensus        81 -~~l~~~~~d~~v~~wd~~~~~  101 (162)
                       ..+..-+.|..+++||+....
T Consensus       180 D~hL~iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  180 DPHLVLLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             CceEEEEecCcEEEEEecCCcc
Confidence             577788889999999997644

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.80  E-value=0.66  Score=21.05  Aligned_cols=31  Identities=13%  Similarity=0.176  Sum_probs=22.0

Q ss_pred             CCCC-EEEEecCCCeEEEEeCCCccceeeeee
Q psy1859          78 QEYN-TFATGGSDGYVNIWDGFNKKRLCQFHR  108 (162)
Q Consensus        78 p~~~-~l~~~~~d~~v~~wd~~~~~~~~~~~~  108 (162)
                      |+++ ++++...++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            4565 444555689999999988877766654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF01011 PQQ: PQQ enzyme repeat family

Probab=91.53  E-value=0.7  Score=20.80  Aligned_cols=27  Identities=30%  Similarity=0.453  Sum_probs=22.8

Q ss_pred             EEEEecCCCeEEEEeCCCceeeeeecc
Q psy1859         123 TFATGGSDGYVNIWDGFNKKRLCQFHR  149 (162)
Q Consensus       123 ~l~~~~~d~~i~iwd~~~~~~~~~~~~  149 (162)
                      .++.++.+|.|.-.|.++|+.+..++.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            456668999999999999999888763

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PHA02713 hypothetical protein; Provisional

Probab=91.48  E-value=3.3  Score=31.34  Aligned_cols=106  Identities=11%  Similarity=0.113  Sum_probs=51.1

Q ss_pred             eCCCeEEEEcCCCcE---EEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC---------
Q psy1859          23 PNKQGYVLSSIEGRA---AVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG---------   90 (162)
Q Consensus        23 ~~~~~l~~~~~~g~i---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~---------   90 (162)
                      -+++.++.|+.++..   .+..+|+.+..+.....+.....         ....+.+  ++.+.+.|+.++         
T Consensus       350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~---------~~~~~~~--~g~IYviGG~~~~~~~~~~~~  418 (557)
T PHA02713        350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALS---------SYGMCVL--DQYIYIIGGRTEHIDYTSVHH  418 (557)
T ss_pred             ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccc---------cccEEEE--CCEEEEEeCCCcccccccccc
Confidence            356777777765421   13335655433443333222211         1112222  567777777542         


Q ss_pred             --------------eEEEEeCCCccce--eeeeecccceeEEEcCCCCEEEEecCC------CeEEEEeCCC
Q psy1859          91 --------------YVNIWDGFNKKRL--CQFHRYDTGITSLFHQEYNTFATGGSD------GYVNIWDGFN  140 (162)
Q Consensus        91 --------------~v~~wd~~~~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~d------~~i~iwd~~~  140 (162)
                                    .+..||..+.+..  ..+....... ++..-+++..+.|+.+      ..+..||..+
T Consensus       419 ~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~  489 (557)
T PHA02713        419 MNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT  489 (557)
T ss_pred             cccccccccccccceEEEECCCCCeEeecCCCCcccccC-cEEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence                          4677887765432  2221111111 1112256667777654      2466788876

>PHA03098 kelch-like protein; Provisional

Probab=91.10  E-value=5.2  Score=29.97  Aligned_cols=63  Identities=14%  Similarity=0.124  Sum_probs=33.9

Q ss_pred             CCCEEEEecCC-----CeEEEEeCCCcccee--eeeecccceeEEEcCCCCEEEEecCC------CeEEEEeCCCce
Q psy1859          79 EYNTFATGGSD-----GYVNIWDGFNKKRLC--QFHRYDTGITSLFHQEYNTFATGGSD------GYVNIWDGFNKK  142 (162)
Q Consensus        79 ~~~~l~~~~~d-----~~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~  142 (162)
                      ++.+++.|+.+     ..+..||..+.+...  .+....... ++..-+++..+.|+.+      ..+..||..+++
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEEECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            46777888765     346778877654322  111111111 1112256666777632      357888887654

>PRK10115 protease 2; Provisional

Probab=90.94  E-value=6.3  Score=30.73  Aligned_cols=110  Identities=10%  Similarity=-0.064  Sum_probs=58.9

Q ss_pred             EEEEEEeeCCCeEEEEcCC-Cc--EEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC---
Q psy1859          16 TRCIKCFPNKQGYVLSSIE-GR--AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD---   89 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~-g~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d---   89 (162)
                      +..+.++|++++++.+.+. |.  -.|+..+..++  ..+..  ....         .-..++|.++++.|+....+   
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg--~~l~~--~i~~---------~~~~~~w~~D~~~~~y~~~~~~~  195 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG--NWYPE--LLDN---------VEPSFVWANDSWTFYYVRKHPVT  195 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC--CCCCc--cccC---------cceEEEEeeCCCEEEEEEecCCC
Confidence            4557789999988876332 22  22333555431  11111  0000         12459999998765544322   


Q ss_pred             ---CeEEEEeCCCc--cceeeeeeccccee-EE-EcCCCCEEEEec---CCCeEEEEeC
Q psy1859          90 ---GYVNIWDGFNK--KRLCQFHRYDTGIT-SL-FHQEYNTFATGG---SDGYVNIWDG  138 (162)
Q Consensus        90 ---~~v~~wd~~~~--~~~~~~~~~~~~v~-~~-~~~~~~~l~~~~---~d~~i~iwd~  138 (162)
                         ..|+.+++.++  +....+........ .. .+.++++++..+   .++.+.+++.
T Consensus       196 ~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        196 LLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence               46788888876  33333333223233 22 444888766554   3457888884

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=90.92  E-value=2.7  Score=26.37  Aligned_cols=28  Identities=14%  Similarity=0.143  Sum_probs=22.6

Q ss_pred             ceeEE-EcCCC------CEEEEecCCCeEEEEeCC
Q psy1859         112 GITSL-FHQEY------NTFATGGSDGYVNIWDGF  139 (162)
Q Consensus       112 ~v~~~-~~~~~------~~l~~~~~d~~i~iwd~~  139 (162)
                      .+..+ |||.|      -+|++.+.++.|.||...
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            56677 99943      388999999999999865

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.61  E-value=1.4  Score=32.76  Aligned_cols=59  Identities=12%  Similarity=0.176  Sum_probs=45.9

Q ss_pred             CCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCC
Q psy1859          80 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGF  139 (162)
Q Consensus        80 ~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~  139 (162)
                      ..++++++..|-|++||.-.-+....+++.+..|..+ .+.+|+++++.+.. .+.+-|++
T Consensus       573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence            3589999999999999976555555667778888888 89999987776544 66777765

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=90.56  E-value=4.7  Score=28.65  Aligned_cols=67  Identities=15%  Similarity=0.090  Sum_probs=38.6

Q ss_pred             ceEEEEecCCCCEEEEec-----------CCC-eEEEEeCCC--ccc--eeeeeecccceeEE-EcCCCCEEEEecCCCe
Q psy1859          70 PVNAISFHQEYNTFATGG-----------SDG-YVNIWDGFN--KKR--LCQFHRYDTGITSL-FHQEYNTFATGGSDGY  132 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~-----------~d~-~v~~wd~~~--~~~--~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~  132 (162)
                      ....|+|.++|+++++..           ..+ .|.+++-.+  ++.  ...+...-.....+ +.++|  |+++.....
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence            467899999999888763           223 677776543  332  23333333345667 88888  444444443


Q ss_pred             EEEEeC
Q psy1859         133 VNIWDG  138 (162)
Q Consensus       133 i~iwd~  138 (162)
                      +++.|.
T Consensus        93 ~~~~d~   98 (367)
T TIGR02604        93 LFLRDK   98 (367)
T ss_pred             EEEeCC
Confidence            344454

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.44  E-value=2.5  Score=25.34  Aligned_cols=113  Identities=8%  Similarity=0.059  Sum_probs=61.6

Q ss_pred             EeeCCCeEEEEcCCCcEEEEEecCCccc------ceeeeeeeeeeeccCcccceeceEEEEecC---C--CCEEEEecCC
Q psy1859          21 CFPNKQGYVLSSIEGRAAVEYLDTGPEM------QKMKYAFKCHRIKEDGIEKIYPVNAISFHQ---E--YNTFATGGSD   89 (162)
Q Consensus        21 ~~~~~~~l~~~~~~g~i~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~--~~~l~~~~~d   89 (162)
                      |......|++++..|.|.|  .++....      ...+..+...+          .|++++-.+   +  ...|+.|+ .
T Consensus         6 fDG~~pcL~~aT~~gKV~I--H~ph~~~~~~~~~~~~i~~LNin~----------~italaaG~l~~~~~~D~LliGt-~   72 (136)
T PF14781_consen    6 FDGVHPCLACATTGGKVFI--HNPHERGQRTGRQDSDISFLNINQ----------EITALAAGRLKPDDGRDCLLIGT-Q   72 (136)
T ss_pred             eCCCceeEEEEecCCEEEE--ECCCccccccccccCceeEEECCC----------ceEEEEEEecCCCCCcCEEEEec-c
Confidence            4444556888888888888  4433211      11222222222          366665433   2  25666665 5


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE----EcCCCCEEEEecCCCeEEEEeCCCceeeeee
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL----FHQEYNTFATGGSDGYVNIWDGFNKKRLCQF  147 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~----~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  147 (162)
                      ..+..||+.....+..-.. ...+.++    +.....-++..+.+..|.-+|....+..++.
T Consensus        73 t~llaYDV~~N~d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   73 TSLLAYDVENNSDLFYKEV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             ceEEEEEcccCchhhhhhC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            5688999987655433222 2445544    4333334555556678888887655555443

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=89.76  E-value=8.7  Score=30.44  Aligned_cols=73  Identities=14%  Similarity=0.162  Sum_probs=47.7

Q ss_pred             ceEEEEecCCC-CEEEEecCCCeEEEEeCCCcc-----ceeeeeeccc----------ceeEE-EcCCCCEEEEecCCCe
Q psy1859          70 PVNAISFHQEY-NTFATGGSDGYVNIWDGFNKK-----RLCQFHRYDT----------GITSL-FHQEYNTFATGGSDGY  132 (162)
Q Consensus        70 ~v~~~~~~p~~-~~l~~~~~d~~v~~wd~~~~~-----~~~~~~~~~~----------~v~~~-~~~~~~~l~~~~~d~~  132 (162)
                      +...++|+|.. ..||.....|...+|++....     .+.......+          .-..+ |.++...|+.++.. .
T Consensus       147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~  225 (765)
T PF10214_consen  147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-K  225 (765)
T ss_pred             ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-c
Confidence            56789999976 799999999999999992211     1111111111          22355 87777777777544 5


Q ss_pred             EEEEeCCCcee
Q psy1859         133 VNIWDGFNKKR  143 (162)
Q Consensus       133 i~iwd~~~~~~  143 (162)
                      +.++|+++...
T Consensus       226 l~~~d~~~~~~  236 (765)
T PF10214_consen  226 LMLIDFESNWQ  236 (765)
T ss_pred             eEEEECCCCCc
Confidence            78888876654

These proteins are found in fungi.

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=89.71  E-value=5.3  Score=27.87  Aligned_cols=80  Identities=13%  Similarity=-0.087  Sum_probs=52.2

Q ss_pred             CCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecC--------------------CCeEEEEe
Q psy1859          79 EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS--------------------DGYVNIWD  137 (162)
Q Consensus        79 ~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~--------------------d~~i~iwd  137 (162)
                      ++++.++-+..|.+..+|..+|+...... -.+....+ |.  |+++++|-.                    ..-|.+-|
T Consensus       212 dgrLwvldsgtGev~~vD~~~G~~e~Va~-vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vid  288 (335)
T TIGR03032       212 QGKLWLLNSGRGELGYVDPQAGKFQPVAF-LPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVID  288 (335)
T ss_pred             CCeEEEEECCCCEEEEEcCCCCcEEEEEE-CCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEE
Confidence            36777788888999999987765433221 23455666 65  777766632                    13478889


Q ss_pred             CCCceeeeeec--cCCCceeEEEecC
Q psy1859         138 GFNKKRLCQFH--RYDTGITSLCFSY  161 (162)
Q Consensus       138 ~~~~~~~~~~~--~~~~~v~~v~~~p  161 (162)
                      +++|..+..+.  +--..+.+|++-|
T Consensus       289 l~tG~vv~~l~feg~v~EifdV~vLP  314 (335)
T TIGR03032       289 LNSGDVVHWLRFEGVIEEIYDVAVLP  314 (335)
T ss_pred             CCCCCEEEEEEeCCceeEEEEEEEec
Confidence            99998877664  3334667777655

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG4460|consensus

Probab=89.64  E-value=5.4  Score=29.92  Aligned_cols=75  Identities=15%  Similarity=0.073  Sum_probs=49.1

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeC---------CCcccee---eee------eccc--ceeEE-EcCCC---CEEE
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDG---------FNKKRLC---QFH------RYDT--GITSL-FHQEY---NTFA  125 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~---------~~~~~~~---~~~------~~~~--~v~~~-~~~~~---~~l~  125 (162)
                      .|..+..++.|..++-.+.+|.+.++=.         ++++...   ++.      ....  .+... |+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            5778888999988888888887766532         2333221   111      1112  23344 99965   5777


Q ss_pred             EecCCCeEEEEeCCCceee
Q psy1859         126 TGGSDGYVNIWDGFNKKRL  144 (162)
Q Consensus       126 ~~~~d~~i~iwd~~~~~~~  144 (162)
                      .-..|+.|++||+...+.+
T Consensus       185 iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEecCcEEEEEecCCcchh
Confidence            8889999999999765544

>KOG3630|consensus

Probab=89.59  E-value=0.98  Score=36.54  Aligned_cols=97  Identities=7%  Similarity=-0.042  Sum_probs=56.8

Q ss_pred             EEEEEeeCC-CeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEE
Q psy1859          17 RCIKCFPNK-QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW   95 (162)
Q Consensus        17 ~~i~~~~~~-~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~w   95 (162)
                      .++.|+|.- ...++...|+.|++.......   ..+..+.          ....+++++|+|.|++++.|...|.+.-|
T Consensus       159 ~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~---~~v~s~p----------~t~~~Tav~WSprGKQl~iG~nnGt~vQy  225 (1405)
T KOG3630|consen  159 LKNVWNPLVPLNSAVDLSDLSLRVKSTKQLA---QNVTSFP----------VTNSQTAVLWSPRGKQLFIGRNNGTEVQY  225 (1405)
T ss_pred             ccccccCCccchhhhhccccchhhhhhhhhh---hhhcccC----------cccceeeEEeccccceeeEecCCCeEEEe
Confidence            456788753 345666778888873332211   1111111          11258999999999999999999999887


Q ss_pred             eCCCc--cceeeeeec-ccceeEE-EcCCCCEEEE
Q psy1859          96 DGFNK--KRLCQFHRY-DTGITSL-FHQEYNTFAT  126 (162)
Q Consensus        96 d~~~~--~~~~~~~~~-~~~v~~~-~~~~~~~l~~  126 (162)
                      ...-.  +.+...... ...|.++ |-....++++
T Consensus       226 ~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  226 EPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             ecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            65422  112111111 2457777 6655554444

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.53  E-value=2.7  Score=27.44  Aligned_cols=50  Identities=10%  Similarity=0.081  Sum_probs=35.1

Q ss_pred             CeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859          26 QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus        26 ~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      +.|..+.....|.+|++..+.  .+....+..-.          .|..+.++..|.++++--
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~--~~~~~~F~Tv~----------~V~~l~y~~~GDYlvTlE   78 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEE--CPLLCTFSTVG----------RVLQLVYSEAGDYLVTLE   78 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCC--CceeEEEcchh----------heeEEEeccccceEEEEE
Confidence            445555667789997766433  55555555443          599999999999999853

>KOG4441|consensus

Probab=89.04  E-value=8.5  Score=29.35  Aligned_cols=107  Identities=22%  Similarity=0.307  Sum_probs=59.2

Q ss_pred             CCCeEEEEcCC-Cc---EEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe-----EEE
Q psy1859          24 NKQGYVLSSIE-GR---AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY-----VNI   94 (162)
Q Consensus        24 ~~~~l~~~~~~-g~---i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~-----v~~   94 (162)
                      ++..+++|+.+ |.   -.+|.+|+..+.+.....+...+..       ..+..+    +|.+.++|+.||.     +-.
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~-------~~v~~l----~g~iYavGG~dg~~~l~svE~  400 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD-------FGVAVL----DGKLYAVGGFDGEKSLNSVEC  400 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc-------ceeEEE----CCEEEEEeccccccccccEEE
Confidence            45777888888 33   3367788776555554443333321       122222    4788889988854     667


Q ss_pred             EeCCCcccee--eeeecccceeEEEcCCCCEEEEecCCC------eEEEEeCCCce
Q psy1859          95 WDGFNKKRLC--QFHRYDTGITSLFHQEYNTFATGGSDG------YVNIWDGFNKK  142 (162)
Q Consensus        95 wd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~  142 (162)
                      ||..+.+.-.  .+......... -.-+|+..++|+.++      .+..||..+++
T Consensus       401 YDp~~~~W~~va~m~~~r~~~gv-~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~  455 (571)
T KOG4441|consen  401 YDPVTNKWTPVAPMLTRRSGHGV-AVLGGKLYIIGGGDGSSNCLNSVECYDPETNT  455 (571)
T ss_pred             ecCCCCcccccCCCCcceeeeEE-EEECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence            7777644322  11111111111 223678888887554      56788877654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=89.01  E-value=5.2  Score=26.88  Aligned_cols=63  Identities=14%  Similarity=0.143  Sum_probs=34.2

Q ss_pred             CCCeEEEEcCCCcEEEEEecCCcccc-eeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCC
Q psy1859          24 NKQGYVLSSIEGRAAVEYLDTGPEMQ-KMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN   99 (162)
Q Consensus        24 ~~~~l~~~~~~g~i~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~   99 (162)
                      .+...++......+.+|.|....... .....+....          .+..++|.  ++.++.+..++ ..+.|+.+
T Consensus       103 ~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~----------~~~~i~~~--~~~i~v~~~~~-f~~idl~~  166 (275)
T PF00780_consen  103 EGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPD----------PPSSIAFL--GNKICVGTSKG-FYLIDLNT  166 (275)
T ss_pred             ccceEEEEEECCEEEEEEEECCcccccceeEEEEcCC----------CcEEEEEe--CCEEEEEeCCc-eEEEecCC
Confidence            34444444555689998887643222 2333333222          58888887  45555555433 45556554

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=88.92  E-value=1  Score=18.71  Aligned_cols=25  Identities=8%  Similarity=0.311  Sum_probs=18.6

Q ss_pred             eEEEEecCCCCEEEEecCCCeEEEE
Q psy1859          71 VNAISFHQEYNTFATGGSDGYVNIW   95 (162)
Q Consensus        71 v~~~~~~p~~~~l~~~~~d~~v~~w   95 (162)
                      ..+++.+++|+++++-+.+..|+++
T Consensus         4 P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCEEEEC
Confidence            5677788888888877777777654

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PHA03098 kelch-like protein; Provisional

Probab=88.52  E-value=8.7  Score=28.81  Aligned_cols=64  Identities=11%  Similarity=0.197  Sum_probs=35.9

Q ss_pred             CCCEEEEecCC--------CeEEEEeCCCccceee--eeecccceeEEEcCCCCEEEEecCC-----CeEEEEeCCCcee
Q psy1859          79 EYNTFATGGSD--------GYVNIWDGFNKKRLCQ--FHRYDTGITSLFHQEYNTFATGGSD-----GYVNIWDGFNKKR  143 (162)
Q Consensus        79 ~~~~l~~~~~d--------~~v~~wd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~  143 (162)
                      ++.+++.|+.+        ..+.+||..+.+....  +.........+ .-+++.++.|+.+     +.+.+||..+.+-
T Consensus       437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE-EECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence            45677777643        2378899887544321  21111111122 2267777777654     4788999887653

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=88.46  E-value=1.7  Score=31.81  Aligned_cols=119  Identities=13%  Similarity=0.079  Sum_probs=59.9

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeee-eeeeeccCcccceeceE-EEEecCCCCEEEEecCCCe
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAF-KCHRIKEDGIEKIYPVN-AISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~~~~~d~~   91 (162)
                      ..+..+-..|+|+.+..-+. .++.+++.+...-..+..... .+..        ...|+ .+..-..|..+++++.||.
T Consensus       221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~--------~~~Vte~l~lL~Gg~SLLv~~~dG~  291 (733)
T COG4590         221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDS--------RHQVTEQLYLLSGGFSLLVVHEDGL  291 (733)
T ss_pred             cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCch--------HHHHHHHHHHHhCceeEEEEcCCCc
Confidence            34455678899998877655 667776666543212211111 1100        00122 2222234567788888888


Q ss_pred             EEEE-eCCCc-cc----eeeeeecccceeEEEcC--CCCEEEEecCCCeEEEEeCCCce
Q psy1859          92 VNIW-DGFNK-KR----LCQFHRYDTGITSLFHQ--EYNTFATGGSDGYVNIWDGFNKK  142 (162)
Q Consensus        92 v~~w-d~~~~-~~----~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~  142 (162)
                      |.-| |.+.+ .+    ++.++-....+..+ .|  +.+-++.-+..|++.++.....+
T Consensus       292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l-~pe~~rkgF~~l~~~G~L~~f~st~~~  349 (733)
T COG4590         292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFL-LPETNRKGFYSLYRNGTLQSFYSTSEK  349 (733)
T ss_pred             eeeeeeeecCCCCcceeeeccccCcccceee-ccccccceEEEEcCCCceeeeecccCc
Confidence            8755 66543 21    11111111222222 23  33456666777877777654443

>KOG4441|consensus

Probab=87.97  E-value=10  Score=28.95  Aligned_cols=109  Identities=17%  Similarity=0.250  Sum_probs=60.7

Q ss_pred             eeCCCeEEEEcCCCcE----EEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC-----eE
Q psy1859          22 FPNKQGYVLSSIEGRA----AVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG-----YV   92 (162)
Q Consensus        22 ~~~~~~l~~~~~~g~i----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~-----~v   92 (162)
                      .-+|+.+++|+.++.-    .+-.+|+.++.++.+..+...+.         ... ++. -++.+++.|+.|+     .+
T Consensus       425 ~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~---------~~g-~a~-~~~~iYvvGG~~~~~~~~~V  493 (571)
T KOG4441|consen  425 VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS---------GFG-VAV-LNGKIYVVGGFDGTSALSSV  493 (571)
T ss_pred             EECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc---------cce-EEE-ECCEEEEECCccCCCccceE
Confidence            3467788888766544    13336776655555544443332         111 222 2467888888776     36


Q ss_pred             EEEeCCCccceee--eeecccceeEEEcCCCCEEEEecCCC-----eEEEEeCCCce
Q psy1859          93 NIWDGFNKKRLCQ--FHRYDTGITSLFHQEYNTFATGGSDG-----YVNIWDGFNKK  142 (162)
Q Consensus        93 ~~wd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~  142 (162)
                      ..||..+.+....  +......+.. ..-++...++|+.|+     +|-.||..+.+
T Consensus       494 E~ydp~~~~W~~v~~m~~~rs~~g~-~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  494 ERYDPETNQWTMVAPMTSPRSAVGV-VVLGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             EEEcCCCCceeEcccCccccccccE-EEECCEEEEEecccCccccceeEEcCCCCCc
Confidence            6788877554332  2211221111 122677788888775     67788877665

>PRK13684 Ycf48-like protein; Provisional

Probab=87.72  E-value=7.7  Score=27.27  Aligned_cols=115  Identities=11%  Similarity=0.083  Sum_probs=56.2

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      +.....+..+.+.++++.++++ ..|.+.+-.-|... ..+.... ....       -...+.++.+.|++..++++ .+
T Consensus       211 ~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~-sW~~~~~-~~~~-------~~~~l~~v~~~~~~~~~~~G-~~  279 (334)
T PRK13684        211 RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE-SWSKPII-PEIT-------NGYGYLDLAYRTPGEIWAGG-GN  279 (334)
T ss_pred             CCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC-ccccccC-Cccc-------cccceeeEEEcCCCCEEEEc-CC
Confidence            3334455677788887766654 45665431112111 1111110 0000       00147888999977766555 56


Q ss_pred             CeEEEEeCCCccceeeee---ecccceeEE-EcCCCCEEEEecCCCeEEEEe
Q psy1859          90 GYVNIWDGFNKKRLCQFH---RYDTGITSL-FHQEYNTFATGGSDGYVNIWD  137 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~---~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd  137 (162)
                      |.+.. ....++.-....   .-....+.+ |..+++.++ .+..|.|.-++
T Consensus       280 G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~  329 (334)
T PRK13684        280 GTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV  329 (334)
T ss_pred             CeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence            65543 333333322221   122346666 665655555 44677776665

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=87.44  E-value=7.3  Score=26.73  Aligned_cols=71  Identities=14%  Similarity=0.134  Sum_probs=46.0

Q ss_pred             CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEec------CCCeEEEEeCCCceeeeeecc-----CCCcee
Q psy1859          88 SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGG------SDGYVNIWDGFNKKRLCQFHR-----YDTGIT  155 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~-----~~~~v~  155 (162)
                      ....|++||..+.+...--..-.+.|+.+ |..+.++++.|.      ....+..||+.+..-. .+..     -.++|.
T Consensus        14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~   92 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVT   92 (281)
T ss_pred             CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEE
Confidence            34678999988776655444567789999 886666676664      3457888998765421 2222     235666


Q ss_pred             EEEe
Q psy1859         156 SLCF  159 (162)
Q Consensus       156 ~v~~  159 (162)
                      .+.+
T Consensus        93 a~~~   96 (281)
T PF12768_consen   93 ALTF   96 (281)
T ss_pred             EEEe
Confidence            6655

>PHA02790 Kelch-like protein; Provisional

Probab=87.26  E-value=10  Score=28.18  Aligned_cols=105  Identities=11%  Similarity=0.008  Sum_probs=48.6

Q ss_pred             eCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC---eEEEEeCCC
Q psy1859          23 PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG---YVNIWDGFN   99 (162)
Q Consensus        23 ~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~---~v~~wd~~~   99 (162)
                      -++..+++|+.++.-.+..+++..+.......+...+.         ....+.  -++++.+.|+.++   .+..||.++
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~---------~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~  385 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRC---------NPAVAS--INNVIYVIGGHSETDTTTEYLLPNH  385 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCc---------ccEEEE--ECCEEEEecCcCCCCccEEEEeCCC
Confidence            45666677765443234446654432333222221111         111222  2467778877553   466788776


Q ss_pred             ccceee--eeecccceeEEEcCCCCEEEEecCCCeEEEEeCCCce
Q psy1859         100 KKRLCQ--FHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKK  142 (162)
Q Consensus       100 ~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  142 (162)
                      .+....  +....... ++..-+++..+.|+   ..-+||.++.+
T Consensus       386 ~~W~~~~~m~~~r~~~-~~~~~~~~IYv~GG---~~e~ydp~~~~  426 (480)
T PHA02790        386 DQWQFGPSTYYPHYKS-CALVFGRRLFLVGR---NAEFYCESSNT  426 (480)
T ss_pred             CEEEeCCCCCCccccc-eEEEECCEEEEECC---ceEEecCCCCc
Confidence            543221  11111111 11122455556653   45677876654

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=87.25  E-value=9  Score=30.74  Aligned_cols=30  Identities=17%  Similarity=0.102  Sum_probs=23.4

Q ss_pred             ceEEEEecCCCCEEEE-ecCCC-----eEEEEeCCC
Q psy1859          70 PVNAISFHQEYNTFAT-GGSDG-----YVNIWDGFN   99 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~-~~~d~-----~v~~wd~~~   99 (162)
                      ++.+-+|||+|+.++- .+.++     .|.+-|+++
T Consensus       351 ~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t  386 (912)
T TIGR02171       351 SVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNA  386 (912)
T ss_pred             ceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhc
Confidence            6889999999998887 34333     588888876

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=87.22  E-value=4.4  Score=26.47  Aligned_cols=48  Identities=19%  Similarity=0.227  Sum_probs=34.2

Q ss_pred             CCEEEEecCCCeEEEEeCCC--ccceeeeeecccceeEE-EcCCCCEEEEecC
Q psy1859          80 YNTFATGGSDGYVNIWDGFN--KKRLCQFHRYDTGITSL-FHQEYNTFATGGS  129 (162)
Q Consensus        80 ~~~l~~~~~d~~v~~wd~~~--~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~  129 (162)
                      +.+|++ .....|.+|++..  .++..++..- +.+..+ ++..|+|++|--.
T Consensus        29 d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~   79 (215)
T PF14761_consen   29 DALFVA-ASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE   79 (215)
T ss_pred             ceEEEE-cCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence            344444 5667799999983  3445566543 678888 9999999999753

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=87.06  E-value=1.6  Score=34.25  Aligned_cols=102  Identities=12%  Similarity=0.187  Sum_probs=59.0

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCC---cEEEEEecCCccccee-eeeeeeeeeccCcccceeceEEEEecCCCCEEEE
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEG---RAAVEYLDTGPEMQKM-KYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFAT   85 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g---~i~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~   85 (162)
                      .+..|....++|-|+|..+++-..||   ...+..++.+.  .++ .+.++-.        ....+..++|+-....++ 
T Consensus       243 ep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNG--LrHGef~lr~~--------~dEk~~~~~wn~~s~vla-  311 (1243)
T COG5290         243 EPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNG--LRHGEFDLRVG--------CDEKAFLENWNLLSTVLA-  311 (1243)
T ss_pred             CCcccchhccccccCCceeeeeccCCCCCcceEEEEccCC--cccCCccccCC--------chhhhhhhhhhHHHHHHH-
Confidence            34455566799999999999876443   23333355432  111 1111111        112466777866544333 


Q ss_pred             ecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCC
Q psy1859          86 GGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYN  122 (162)
Q Consensus        86 ~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~  122 (162)
                      ....+.+.+|...+..........-..+.-+ |+|..+
T Consensus       312 v~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~  349 (1243)
T COG5290         312 VAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEK  349 (1243)
T ss_pred             HhhcceEEEEEccceEEEEEEeecCCCcceeeeccccC
Confidence            3456789999988766655554555666677 998543

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=86.96  E-value=10  Score=28.02  Aligned_cols=110  Identities=10%  Similarity=0.051  Sum_probs=59.0

Q ss_pred             CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccce
Q psy1859          24 NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRL  103 (162)
Q Consensus        24 ~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~  103 (162)
                      .|..+++++.||.|.=| +|..+.......-.+....      ....+..+.-....+-+++-..+|.+.++.....+.+
T Consensus       279 Gg~SLLv~~~dG~vsQW-Fdvr~~~~p~l~h~R~f~l------~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l  351 (733)
T COG4590         279 GGFSLLVVHEDGLVSQW-FDVRRDGQPHLNHIRNFKL------APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL  351 (733)
T ss_pred             CceeEEEEcCCCceeee-eeeecCCCCcceeeecccc------CcccceeeccccccceEEEEcCCCceeeeecccCcce
Confidence            34557788889998887 5654321211110010000      0012222221122356777777888877765554433


Q ss_pred             eeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCce
Q psy1859         104 CQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKK  142 (162)
Q Consensus       104 ~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~  142 (162)
                      -.-... ..+..+ +||.+.++++- +.|.++++.+.+..
T Consensus       352 L~~~~~-~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~  389 (733)
T COG4590         352 LFERAY-QAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRN  389 (733)
T ss_pred             ehhhhh-cCcceeeeCcccchheee-cCCceEEEEecCCC
Confidence            222222 244455 99999888776 55689999887654

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=86.89  E-value=11  Score=27.96  Aligned_cols=60  Identities=10%  Similarity=0.165  Sum_probs=33.5

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY   80 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~   80 (162)
                      +-..|+|.|+++.|++--..|.|++  ++...........+......    .-......|+++|+-
T Consensus        31 ~Pw~maflPDG~llVtER~~G~I~~--v~~~~~~~~~~~~l~~v~~~----~ge~GLlglal~PdF   90 (454)
T TIGR03606        31 KPWALLWGPDNQLWVTERATGKILR--VNPETGEVKVVFTLPEIVND----AQHNGLLGLALHPDF   90 (454)
T ss_pred             CceEEEEcCCCeEEEEEecCCEEEE--EeCCCCceeeeecCCceecc----CCCCceeeEEECCCc
Confidence            3468999999987766544688887  44432112222222111000    012368999999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG3616|consensus

Probab=86.48  E-value=3  Score=32.70  Aligned_cols=65  Identities=18%  Similarity=0.237  Sum_probs=40.8

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEe
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWD  137 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd  137 (162)
                      .++++.-+|.+..++.++.||.|.+|+....+..+.... ..+-..+ |...|  |++...|..+.-|.
T Consensus        16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~-~~p~~nlv~tnhg--l~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE-AKPKENLVFTNHG--LVTATSDRRALAWK   81 (1636)
T ss_pred             eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh-cCCccceeeeccc--eEEEeccchhheee
Confidence            578888899999999999999999999865443222111 1222333 54444  44444455555554

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=86.47  E-value=8.7  Score=26.61  Aligned_cols=76  Identities=13%  Similarity=0.227  Sum_probs=43.3

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      .|+.+|...++|.+|+++-.-..|.+  ++..+  .+.+..+.+.....+.  .  .-...+|-.+-+.+-.+..++.|.
T Consensus       144 ~HiNsV~~~~~G~yLiS~R~~~~i~~--I~~~t--G~I~W~lgG~~~~df~--~--~~~~f~~QHdar~~~~~~~~~~Is  215 (299)
T PF14269_consen  144 FHINSVDKDDDGDYLISSRNTSTIYK--IDPST--GKIIWRLGGKRNSDFT--L--PATNFSWQHDARFLNESNDDGTIS  215 (299)
T ss_pred             cEeeeeeecCCccEEEEecccCEEEE--EECCC--CcEEEEeCCCCCCccc--c--cCCcEeeccCCEEeccCCCCCEEE
Confidence            58888988889999888766566655  77666  5666665554211100  0  112233333333333445667777


Q ss_pred             EEeC
Q psy1859          94 IWDG   97 (162)
Q Consensus        94 ~wd~   97 (162)
                      ++|-
T Consensus       216 lFDN  219 (299)
T PF14269_consen  216 LFDN  219 (299)
T ss_pred             EEcC
Confidence            7765

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=85.97  E-value=7.8  Score=26.84  Aligned_cols=69  Identities=10%  Similarity=0.230  Sum_probs=45.3

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeeccc-ce----eEE-EcCCCCEEEEecCCCeEEEEeC
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT-GI----TSL-FHQEYNTFATGGSDGYVNIWDG  138 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~-~v----~~~-~~~~~~~l~~~~~d~~i~iwd~  138 (162)
                      -+.+|...++|.+|++.-.-..|.+.|.++++.+..+.+... ..    ... +-.+-+++-.+..++.|.++|=
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN  219 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN  219 (299)
T ss_pred             EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence            466778888899999998889999999998888877754411 10    111 2223444444455666666664

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=85.75  E-value=10  Score=28.32  Aligned_cols=73  Identities=10%  Similarity=0.125  Sum_probs=41.5

Q ss_pred             eEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCC
Q psy1859          27 GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN   99 (162)
Q Consensus        27 ~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~   99 (162)
                      .|+.++.+|.+.+..|+.........+..........+......-..++.+|.++.++.+..++.+.++.++.
T Consensus         2 ~L~v~tdsg~l~~l~~~~~~~~~~~~~v~~~~~~~~~~~r~~~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~   74 (504)
T PF10433_consen    2 SLVVTTDSGKLSILEYDPSTHGFFKEFVHQWEPLSKSGSRLSQPGQYLAVDPSGRCIAVSAYEGNFLVYPLNR   74 (504)
T ss_dssp             EEEEEETTTEEEEEEEEEETTEE-E-EEEEEEE---SSSEB-TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS
T ss_pred             EEEEEECCCCEEEEEEECCCCccceeeEEEeEecCCCCCChhcCCcEEEECCcCCEEEEEecCCeEEEEEecc
Confidence            5777888898888777753311111000000111111222233556788999999999999999999999887

...

>PRK13684 Ycf48-like protein; Provisional

Probab=85.62  E-value=10  Score=26.66  Aligned_cols=112  Identities=13%  Similarity=0.108  Sum_probs=57.6

Q ss_pred             eeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859           8 RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      ......+.+..+.+.|++.++++ +..|.+.. ..+..........   ....        ..+.++.+.++++.++++ 
T Consensus       167 ~~~~~~g~~~~i~~~~~g~~v~~-g~~G~i~~-s~~~gg~tW~~~~---~~~~--------~~l~~i~~~~~g~~~~vg-  232 (334)
T PRK13684        167 LVEDAAGVVRNLRRSPDGKYVAV-SSRGNFYS-TWEPGQTAWTPHQ---RNSS--------RRLQSMGFQPDGNLWMLA-  232 (334)
T ss_pred             CcCCCcceEEEEEECCCCeEEEE-eCCceEEE-EcCCCCCeEEEee---CCCc--------ccceeeeEcCCCCEEEEe-
Confidence            33444556777888887765554 44454432 1222211122111   1111        158899999998877765 


Q ss_pred             CCCeEEEEeCCCccceeeeee----cccceeEE-EcCCCCEEEEecCCCeEE
Q psy1859          88 SDGYVNIWDGFNKKRLCQFHR----YDTGITSL-FHQEYNTFATGGSDGYVN  134 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~~~~----~~~~v~~~-~~~~~~~l~~~~~d~~i~  134 (162)
                      ..|.+.+=....+..-.....    ....+..+ +.|++..++++ .+|.+.
T Consensus       233 ~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~  283 (334)
T PRK13684        233 RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL  283 (334)
T ss_pred             cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE
Confidence            456654322333322111111    12346677 88887765555 566554

>PHA02790 Kelch-like protein; Provisional

Probab=83.83  E-value=16  Score=27.24  Aligned_cols=60  Identities=7%  Similarity=0.021  Sum_probs=32.0

Q ss_pred             CCCEEEEecCCCeEEEEeCCCcccee--eeeecccceeEEEcCCCCEEEEecCC-----CeEEEEeCCCce
Q psy1859          79 EYNTFATGGSDGYVNIWDGFNKKRLC--QFHRYDTGITSLFHQEYNTFATGGSD-----GYVNIWDGFNKK  142 (162)
Q Consensus        79 ~~~~l~~~~~d~~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~  142 (162)
                      ++++.+.|+   .+..||..+.+...  .+.........+ .-+++..+.|+.+     ..+..||..+++
T Consensus       407 ~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        407 GRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             CCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            456666664   46778887654332  221111111111 2267777887754     356677776654

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=83.39  E-value=13  Score=25.97  Aligned_cols=68  Identities=13%  Similarity=0.176  Sum_probs=45.5

Q ss_pred             eEEEEecCCCCEEEEecCCCeEEEEeCCC------c-cceeeeee-----cccceeEE-EcCCC------------CEEE
Q psy1859          71 VNAISFHQEYNTFATGGSDGYVNIWDGFN------K-KRLCQFHR-----YDTGITSL-FHQEY------------NTFA  125 (162)
Q Consensus        71 v~~~~~~p~~~~l~~~~~d~~v~~wd~~~------~-~~~~~~~~-----~~~~v~~~-~~~~~------------~~l~  125 (162)
                      -..|+++|.+.+-++....+...+||...      . ..+..+..     .....+.+ |+...            ..++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            45899999998888888889999999871      1 12223321     12244555 55322            2367


Q ss_pred             EecCCCeEEEEeC
Q psy1859         126 TGGSDGYVNIWDG  138 (162)
Q Consensus       126 ~~~~d~~i~iwd~  138 (162)
                      .+++||+|.-|..
T Consensus       105 f~tEdGTisaW~p  117 (336)
T TIGR03118       105 FVTEDGTLSGWAP  117 (336)
T ss_pred             EEeCCceEEeecC
Confidence            7789999999985

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=83.09  E-value=12  Score=29.42  Aligned_cols=73  Identities=14%  Similarity=0.035  Sum_probs=47.5

Q ss_pred             cEEEEEEe--eCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC---C---EEEEe
Q psy1859          15 QTRCIKCF--PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY---N---TFATG   86 (162)
Q Consensus        15 ~~~~i~~~--~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~---~l~~~   86 (162)
                      ....++++  ...+++|++++...|.|+-+............   +.       +..-|.+|.|-++.   .   .++++
T Consensus       165 SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s---~~-------~~hNIP~VSFl~~~~d~~G~v~v~a~  234 (717)
T PF08728_consen  165 SAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS---HQ-------HSHNIPNVSFLDDDLDPNGHVKVVAT  234 (717)
T ss_pred             ceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc---cc-------cccCCCeeEeecCCCCCccceEEEEE
Confidence            44557777  66788888888899999877763211111111   11       22248888886643   2   77788


Q ss_pred             cCCCeEEEEeC
Q psy1859          87 GSDGYVNIWDG   97 (162)
Q Consensus        87 ~~d~~v~~wd~   97 (162)
                      +-.|.+.+|++
T Consensus       235 dI~G~v~~~~I  245 (717)
T PF08728_consen  235 DISGEVWTFKI  245 (717)
T ss_pred             eccCcEEEEEE
Confidence            88999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=82.97  E-value=14  Score=25.94  Aligned_cols=114  Identities=11%  Similarity=0.066  Sum_probs=62.7

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCc------EEEEEecCCcccceeeeeeeeeeecc-Ccc---cceeceEEEEecCCCCEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGR------AAVEYLDTGPEMQKMKYAFKCHRIKE-DGI---EKIYPVNAISFHQEYNTF   83 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~------i~i~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~v~~~~~~p~~~~l   83 (162)
                      +..+.|.+.+++..+++.+++|.      .....++........+.......... .+.   .-..-..+|++.+++.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            45678999976556666677776      44433333111011111111111000 000   000135578887788888


Q ss_pred             EEecCC------CeEEEEeCCCccceeeee---------------ecccceeEE-EcCCCCEEEEec
Q psy1859          84 ATGGSD------GYVNIWDGFNKKRLCQFH---------------RYDTGITSL-FHQEYNTFATGG  128 (162)
Q Consensus        84 ~~~~~d------~~v~~wd~~~~~~~~~~~---------------~~~~~v~~~-~~~~~~~l~~~~  128 (162)
                      ++.-.+      ..|..++.. |+....+.               ..+...-.+ ++|+|+.|+++.
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            888777      889999876 55544331               123456678 999999766664

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=82.96  E-value=16  Score=26.60  Aligned_cols=88  Identities=10%  Similarity=0.070  Sum_probs=47.4

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCcc-----ceeeeee--cccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKK-----RLCQFHR--YDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK  141 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~-----~~~~~~~--~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~  141 (162)
                      .+.++.|.+++.+++++ ..|.+. +....++     .......  ....+..+ |.+++..+++| ..|.+.... ..+
T Consensus       282 ~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G  357 (398)
T PLN00033        282 RIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGG  357 (398)
T ss_pred             ceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCC
Confidence            58899999998888766 445543 3333332     1222221  12347778 88777766555 666655543 233


Q ss_pred             eeeeee---ccCCCceeEEEecC
Q psy1859         142 KRLCQF---HRYDTGITSLCFSY  161 (162)
Q Consensus       142 ~~~~~~---~~~~~~v~~v~~~p  161 (162)
                      +.=...   ..-....+.+.|.+
T Consensus       358 ~tW~~~~~~~~~~~~ly~v~f~~  380 (398)
T PLN00033        358 KSWKRDKGADNIAANLYSVKFFD  380 (398)
T ss_pred             cceeEccccCCCCcceeEEEEcC
Confidence            321111   12234566777644

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=82.58  E-value=3.4  Score=18.65  Aligned_cols=21  Identities=19%  Similarity=0.196  Sum_probs=15.9

Q ss_pred             CCCEEEEecCCCeEEEEeCCC
Q psy1859         120 EYNTFATGGSDGYVNIWDGFN  140 (162)
Q Consensus       120 ~~~~l~~~~~d~~i~iwd~~~  140 (162)
                      .+..++.++.|+.+..+|.++
T Consensus        20 ~~g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen   20 AGGRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             CTSEEEEE-TTSEEEEEETT-
T ss_pred             ECCEEEEEcCCCEEEEEeCCC
Confidence            466888899999999998764

>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E

Probab=82.17  E-value=5.1  Score=20.45  Aligned_cols=28  Identities=7%  Similarity=0.192  Sum_probs=20.2

Q ss_pred             CCCeEEEEcCCCcEEEEEecCCccccee
Q psy1859          24 NKQGYVLSSIEGRAAVEYLDTGPEMQKM   51 (162)
Q Consensus        24 ~~~~l~~~~~~g~i~i~~~~~~~~~~~~   51 (162)
                      ..+.|+.-+.++.|+|+.+|..++..+.
T Consensus        28 ~~N~Fav~~e~~~iKIfkyd~~tNei~L   55 (63)
T PF14157_consen   28 EHNHFAVVDEDGQIKIFKYDEDTNEITL   55 (63)
T ss_dssp             STTEEEEE-ETTEEEEEEEETTTTEEEE
T ss_pred             cCCEEEEEecCCeEEEEEeCCCCCeEEE
Confidence            3456777789999999999988744433

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=81.87  E-value=8  Score=27.15  Aligned_cols=24  Identities=13%  Similarity=0.202  Sum_probs=19.0

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEE
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      .+..+++.|+|.++++...+|.|+
T Consensus       307 r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  307 RPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             -EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             CceEEEEcCCCeEEEEECCCCeEe
Confidence            588999999999888888888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=81.77  E-value=23  Score=28.23  Aligned_cols=68  Identities=15%  Similarity=0.022  Sum_probs=46.9

Q ss_pred             CCEEEEecCCCeEEEEeCCCccceeeeeecccc--------eeEE--Ec---------------CCCCEEEEecCCCeEE
Q psy1859          80 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG--------ITSL--FH---------------QEYNTFATGGSDGYVN  134 (162)
Q Consensus        80 ~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~--------v~~~--~~---------------~~~~~l~~~~~d~~i~  134 (162)
                      +..+..++.++.|.-.|.++|+.+.++......        ...+  +.               .++..++.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            456667777888988999888877665432110        1112  22               1345788888999999


Q ss_pred             EEeCCCceeeeee
Q psy1859         135 IWDGFNKKRLCQF  147 (162)
Q Consensus       135 iwd~~~~~~~~~~  147 (162)
                      -.|.++|+....+
T Consensus       274 ALDA~TGk~~W~f  286 (764)
T TIGR03074       274 ALDADTGKLCEDF  286 (764)
T ss_pred             EEECCCCCEEEEe
Confidence            9999999887655

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG3616|consensus

Probab=80.42  E-value=5.4  Score=31.41  Aligned_cols=32  Identities=22%  Similarity=0.289  Sum_probs=26.9

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCc
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGP   46 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~   46 (162)
                      -+.++.-+|.+..++.++.||.+.++.|.+..
T Consensus        16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~   47 (1636)
T KOG3616|consen   16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR   47 (1636)
T ss_pred             eeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence            34667788999999999999999998887654

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=80.15  E-value=7.8  Score=21.31  Aligned_cols=29  Identities=0%  Similarity=0.062  Sum_probs=21.8

Q ss_pred             cceeEE-EcCCCCEEEEec-CCCeEEEEeCC
Q psy1859         111 TGITSL-FHQEYNTFATGG-SDGYVNIWDGF  139 (162)
Q Consensus       111 ~~v~~~-~~~~~~~l~~~~-~d~~i~iwd~~  139 (162)
                      .....+ ++|+++++.+++ ..+.|++|...
T Consensus        54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            445567 899999887776 56789988764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	162
3mmy_A	368	Structural And Functional Analysis Of The Interacti		3e-17
2i3t_A	341	Bub3 Complex With Mad3 (Bubr1) Glebs Motif Length =		1e-14
2i3s_A	349	Bub3 Complex With Bub1 Glebs Motif Length = 349		1e-14
1yfq_A	342	High Resolution S. Cerevisiae Bub3 Mitotic Checkpoi		1e-14
1u4c_A	349	Structure Of Spindle Checkpoint Protein Bub3 Length		1e-14
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-04
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		4e-04

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query: 6   QRRESSLKFQTRCIKCFPNKQ----GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR-- 59
           +R ES LK Q RC+  F +KQ    G+ L SIEGR A+ Y++  P   K  + FKCHR  
Sbjct: 205 RRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPAKDNFTFKCHRSN 263
Query: 60  -IKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITS-LF 117
                  + IY VN I+FH  + T AT GSDG  + WD   + +L    + D  I++  F
Sbjct: 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF 323
Query: 118 HQEYNTFATGGS 129
           +   N FA   S
Sbjct: 324 NHNGNIFAYASS 335

>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif Length = 341

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 8   RESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDT-GPEMQKMK-YAFKCHRIKEDG 64
            ES LK+Q R +   P +Q GY  SSI+GR AVE+ D  G +    K +AF+CHR+    
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247
Query: 65  IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD 110
               YPVN+I F   +    T GSDG ++ W+   +K++  F +++
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293

>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif Length = 349

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 8   RESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDT-GPEMQKMK-YAFKCHRIKEDG 64
            ES LK+Q R +   P +Q GY  SSI+GR AVE+ D  G +    K +AF+CHR+    
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247
Query: 65  IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD 110
               YPVN+I F   +    T GSDG ++ W+   +K++  F +++
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293

>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint Protein Length = 342

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 8   RESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDT-GPEMQKMK-YAFKCHRIKEDG 64
            ES LK+Q R +   P +Q GY  SSI+GR AVE+ D  G +    K +AF+CHR+    
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247
Query: 65  IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD 110
               YPVN+I F   +    T GSDG ++ W+   +K++  F +++
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293

>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3 Length = 349

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 8   RESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDT-GPEMQKMK-YAFKCHRIKEDG 64
            ES LK+Q R +   P +Q GY  SSI+GR AVE+ D  G +    K +AF+CHR+    
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247
Query: 65  IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD 110
               YPVN+I F   +    T GSDG ++ W+   +K++  F +++
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 79  EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWD 137
           E N   TG  D  + ++D  NKK L Q   +D G+ +L +       +G +D  V +WD
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD 189

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 79  EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWD 137
           E N   TG  D  + ++D  NKK L Q   +D G+ +L +       +G +D  V +WD
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD 189

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.97
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.97
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.96
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.96
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.96
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.96
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.96
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.96
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.96
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.96
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.96
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.95
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.95
2pm7_B	297	Protein transport protein SEC13, protein transport	99.95
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.95
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.95
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.95
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.95
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.95
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.95
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.95
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.95
2pm7_B	297	Protein transport protein SEC13, protein transport	99.94
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.94
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.94
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.94
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.94
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.94
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.94
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.94
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.94
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.94
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.94
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.94
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.93
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.93
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.93
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.93
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.93
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.93
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.93
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.93
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.93
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.93
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.93
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.93
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.93
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.93
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.93
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.93
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.93
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.93
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.93
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.93
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.93
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.92
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.92
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.92
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.92
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.92
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.92
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.92
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.92
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.92
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.92
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.92
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.92
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.92
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.92
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.92
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.92
3jro_A	753	Fusion protein of protein transport protein SEC13	99.92
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.92
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.92
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.91
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.91
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.91
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.91
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.91
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.91
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.91
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.91
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.91
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.91
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.91
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.91
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.91
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.91
3jro_A	753	Fusion protein of protein transport protein SEC13	99.91
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.9
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.9
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.9
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.9
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.9
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.9
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.9
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.9
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.89
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.89
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.89
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.89
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.89
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.89
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.88
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.88
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.88
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.87
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.87
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.86
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.86
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.86
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.84
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.84
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.84
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.83
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.83
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.81
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.81
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.81
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.81
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.8
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.8
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.78
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.76
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.74
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.72
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.71
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.7
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.68
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.68
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.68
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.67
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.67
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.65
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.65
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.65
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.64
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.64
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.63
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.62
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.62
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.61
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.61
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.61
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.61
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.6
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.59
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.58
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.57
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.57
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.54
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.53
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.53
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.53
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.53
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.52
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.51
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.48
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.48
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.46
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.44
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.42
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.4
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.4
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.36
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.36
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.35
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.35
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.33
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.3
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.3
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.3
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.28
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.27
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.25
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.23
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.23
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.23
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.23
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.2
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.2
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.19
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.19
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.17
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.15
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.14
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.11
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.11
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.1
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.09
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.09
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.08
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.08
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.02
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.99
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.98
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.94
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.88
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.85
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.85
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.84
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.81
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.8
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.8
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.79
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.78
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.73
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.72
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.7
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.7
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.68
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.67
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.65
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.64
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.59
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.53
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.49
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.48
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.41
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.41
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.41
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.38
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.36
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.36
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.35
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.35
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.33
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.31
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.3
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.29
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.24
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.21
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.19
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.15
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.08
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.05
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.94
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.93
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.89
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.79
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.78
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.75
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.68
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.67
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.66
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.65
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.6
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.55
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.53
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.53
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.52
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.43
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.42
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.36
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.35
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.35
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.34
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.34
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.33
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.33
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.29
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.26
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.25
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.18
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.14
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.11
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.06
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.03
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.02
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.01
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.96
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.94
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.92
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.91
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.83
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.79
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.74
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.69
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.6
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.52
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.39
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.39
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.38
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.34
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.28
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.24
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.2
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.18
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.15
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.06
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.04
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.91
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.8
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.72
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.69
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.69
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	95.59
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.47
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.44
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.41
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.39
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.3
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.14
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.12
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.09
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.0
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.0
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	94.69
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	94.59
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	94.51
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.25
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.1
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.82
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	93.82
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	93.51
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.49
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.22
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	93.13
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.11
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	92.74
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	92.7
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	92.7
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.65
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	92.64
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.85
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	91.31
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	91.03
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.95
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	90.38
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	89.64
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	89.63
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	89.33
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	89.23
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	89.21
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.94
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	88.9
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	88.77
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	87.72
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	86.91
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	86.06
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	84.77
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	84.06
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	83.47
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	80.83

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.97  E-value=1.2e-29  Score=170.01  Aligned_cols=148  Identities=18%  Similarity=0.199  Sum_probs=127.7

Q ss_pred             CcccceeeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC
Q psy1859           1 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY   80 (162)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~   80 (162)
                      |....++....+...|.+++|+|+++++++++.||.|++|+++.    ......+..|..         +|.+++|+|++
T Consensus         1 ~~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~----~~~~~~~~~~~~---------~v~~~~~~~~~   67 (304)
T 2ynn_A            1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET----QVEVRSIQVTET---------PVRAGKFIARK   67 (304)
T ss_dssp             -CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT----TEEEEEEECCSS---------CEEEEEEEGGG
T ss_pred             CcceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC----CceeEEeeccCC---------cEEEEEEeCCC
Confidence            34445555666778899999999999999999999999976653    334444454443         79999999999


Q ss_pred             CEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc-eeeeeeccCCCceeEEE
Q psy1859          81 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK-KRLCQFHRYDTGITSLC  158 (162)
Q Consensus        81 ~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~v~  158 (162)
                      ++|++++.|+.|++||+.+++.+..+..|...+.++ |+|+++++++++.|++|++||++++ .....+.+|...|.+++
T Consensus        68 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~  147 (304)
T 2ynn_A           68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA  147 (304)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEE
T ss_pred             CEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEE
Confidence            999999999999999999999999999999999999 9999999999999999999999877 55677889999999999


Q ss_pred             ecC
Q psy1859         159 FSY  161 (162)
Q Consensus       159 ~~p  161 (162)
                      |+|
T Consensus       148 ~~p  150 (304)
T 2ynn_A          148 FNP  150 (304)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            998

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.97  E-value=5.5e-29  Score=168.05  Aligned_cols=137  Identities=16%  Similarity=0.286  Sum_probs=123.1

Q ss_pred             cccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeE
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV   92 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v   92 (162)
                      ...+.+++|+|++++|++++.||.|++|+..  +  .+....+.+|..         +|.+++|+|++++|++++.|+.|
T Consensus       164 ~~~v~~~~~spdg~~lasg~~dg~i~iwd~~--~--~~~~~~~~~h~~---------~v~~l~~spd~~~l~s~s~dg~i  230 (321)
T 3ow8_A          164 GKFILSIAYSPDGKYLASGAIDGIINIFDIA--T--GKLLHTLEGHAM---------PIRSLTFSPDSQLLVTASDDGYI  230 (321)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETT--T--TEEEEEECCCSS---------CCCEEEECTTSCEEEEECTTSCE
T ss_pred             CceEEEEEECCCCCEEEEEcCCCeEEEEECC--C--CcEEEEEcccCC---------ceeEEEEcCCCCEEEEEcCCCeE
Confidence            4567899999999999999999999996554  3  344555555543         79999999999999999999999


Q ss_pred             EEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          93 NIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ++||++.++....+..|...+.++ |+|++++|++++.|+.|++||+++++++.++..|...|.+++|+||
T Consensus       231 ~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~  301 (321)
T 3ow8_A          231 KIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGN  301 (321)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             EEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            999999998888999999999999 9999999999999999999999999999999999999999999986

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.96  E-value=2.9e-28  Score=169.37  Aligned_cols=140  Identities=17%  Similarity=0.199  Sum_probs=125.7

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ..+...+.+++|+|+++++++|+.||.|+||+++..    .....+.+|..         .|.+++|+|++++|++|+.|
T Consensus       105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~----~~~~~l~~h~~---------~V~~v~~~~~~~~l~sgs~D  171 (410)
T 1vyh_C          105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG----DFERTLKGHTD---------SVQDISFDHSGKLLASCSAD  171 (410)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC----CCCEEECCCSS---------CEEEEEECTTSSEEEEEETT
T ss_pred             cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----cEEEEEeccCC---------cEEEEEEcCCCCEEEEEeCC
Confidence            446678999999999999999999999999776543    33445555544         79999999999999999999


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +.|++||+.+++.+..+..|...|.++ |+|+++++++++.|+.|++||++++.++..+.+|...|.++.|+||
T Consensus       172 ~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~  245 (410)
T 1vyh_C          172 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD  245 (410)
T ss_dssp             SCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred             CeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCC
Confidence            999999999999999999999999999 9999999999999999999999999999999999999999999986

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.96  E-value=2e-27  Score=159.44  Aligned_cols=140  Identities=19%  Similarity=0.241  Sum_probs=123.9

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ..+...+.+++|+|++++|++++.||.+++|+...    .+....+.+|.         ..|.+++|+|++++|++++.|
T Consensus        20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~----~~~~~~~~~h~---------~~v~~~~~~~~~~~l~s~~~d   86 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD----GKFEKTISGHK---------LGISDVAWSSDSNLLVSASDD   86 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----CCEEEEECCCS---------SCEEEEEECTTSSEEEEEETT
T ss_pred             cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC----cccchhhccCC---------CceEEEEEcCCCCEEEEECCC
Confidence            34566789999999999999999999999976543    23333444444         379999999999999999999


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +.|++||+++++.+..+..|...+.++ |+|+++++++++.|+.|++||+++++.+..+..|..+|.+++|+|+
T Consensus        87 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (312)
T 4ery_A           87 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD  160 (312)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCC
Confidence            999999999999999999999999999 9999999999999999999999999999999999999999999986

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.96  E-value=1.1e-27  Score=163.04  Aligned_cols=139  Identities=19%  Similarity=0.175  Sum_probs=116.7

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSD   89 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d   89 (162)
                      .+...|.+++|+|++++|++|+.|+.|++|++.  +  .+.+..+.+|..         .|.+++|+|++ .+|++++.|
T Consensus       125 ~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~--~--~~~~~~~~~h~~---------~V~~~~~~~~~~~~l~s~s~D  191 (344)
T 4gqb_B          125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA--Q--QVVLSSYRAHAA---------QVTCVAASPHKDSVFLSCSED  191 (344)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT--T--TEEEEEECCCSS---------CEEEEEECSSCTTEEEEEETT
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC--C--CcEEEEEcCcCC---------ceEEEEecCCCCCceeeeccc
Confidence            456779999999999999999999999996654  3  445556666554         79999999998 688999999


Q ss_pred             CeEEEEeCCCccceeeee--ecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          90 GYVNIWDGFNKKRLCQFH--RYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~--~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +.|++||+++++....+.  .+...+.++ |+| +++++++|+.|+.|++||+++++++..+.+|...|++++|+||
T Consensus       192 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~  268 (344)
T 4gqb_B          192 NRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPH  268 (344)
T ss_dssp             SCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSS
T ss_pred             cccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence            999999999998877664  345568888 998 5678899999999999999999999999999999999999986

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.96  E-value=1.5e-27  Score=162.46  Aligned_cols=138  Identities=12%  Similarity=0.108  Sum_probs=116.5

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeee-eeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYA-FKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV   92 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v   92 (162)
                      ..+.+++|+|++++|++|+.|+.|+||+.+...  ...... ..+         |...|.+++|+|++++|++++.|+.+
T Consensus        17 ~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~--~~~~~~~~~~---------h~~~v~~~~~sp~g~~l~s~s~D~~v   85 (345)
T 3fm0_A           17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDS--WICKSVLSEG---------HQRTVRKVAWSPCGNYLASASFDATT   85 (345)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSCEEEEEEETTE--EEEEEEECSS---------CSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCc--ceeeeeeccc---------cCCcEEEEEECCCCCEEEEEECCCcE
Confidence            378899999999999999999999998776532  111111 122         44589999999999999999999999


Q ss_pred             EEEeCCCc--cceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc---eeeeeeccCCCceeEEEecCC
Q psy1859          93 NIWDGFNK--KRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK---KRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        93 ~~wd~~~~--~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ++||+..+  +.+..+.+|...|.++ |+|++++|++++.|+.|++||++++   .++..+..|...|.+++|+|+
T Consensus        86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~  161 (345)
T 3fm0_A           86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS  161 (345)
T ss_dssp             EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred             EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC
Confidence            99998875  4567788899999999 9999999999999999999999865   346677889999999999986

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.96  E-value=1.4e-27  Score=162.56  Aligned_cols=142  Identities=13%  Similarity=0.168  Sum_probs=121.1

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ..+...+.+++|+|++++|++++.|+.++||+.+...  ......+.+|..         .|.+++|+|++++|++++.|
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~--~~~~~~~~~h~~---------~v~~v~~sp~~~~l~s~s~D  126 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD--FECVTTLEGHEN---------EVKSVAWAPSGNLLATCSRD  126 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC---EEEEEEECCCSS---------CEEEEEECTTSSEEEEEETT
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC--eEEEEEccCCCC---------CceEEEEeCCCCEEEEEECC
Confidence            3466779999999999999999999999998776543  344555555544         79999999999999999999


Q ss_pred             CeEEEEeCCCcc---ceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCce--eeeeeccCCCceeEEEecCC
Q psy1859          90 GYVNIWDGFNKK---RLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKK--RLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        90 ~~v~~wd~~~~~---~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +.|++||++.+.   .+..+..|...+.++ |+|++++|++++.|+.|++||+++++  +...+.+|...|++++|+||
T Consensus       127 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~  205 (345)
T 3fm0_A          127 KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS  205 (345)
T ss_dssp             SCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTT
T ss_pred             CeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCC
Confidence            999999998753   355667888999999 99999999999999999999998775  45678899999999999996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.6e-27  Score=161.39  Aligned_cols=142  Identities=14%  Similarity=0.220  Sum_probs=115.7

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcc---cceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPE---MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      +...+.+++|+|++++|++++.|+.|+||+.+....   .......+.+|         ...|.+++|+|++++|++++.
T Consensus        57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h---------~~~V~~v~~sp~g~~las~s~  127 (330)
T 2hes_X           57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH---------ENEVKGVAWSNDGYYLATCSR  127 (330)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-------------CEEEEEECTTSCEEEEEET
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCC---------CCcEEEEEECCCCCEEEEEeC
Confidence            567799999999999999999999999987643210   11233334444         448999999999999999999


Q ss_pred             CCeEEEEeCCCc----cceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc--eeeeeeccCCCceeEEEecC
Q psy1859          89 DGYVNIWDGFNK----KRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK--KRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        89 d~~v~~wd~~~~----~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~v~~~p  161 (162)
                      |+.|++||++..    +.+..+..|...+.++ |+|++.+|++++.|++|++||.+++  +++..+.+|...|.+++|+|
T Consensus       128 D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~  207 (330)
T 2hes_X          128 DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK  207 (330)
T ss_dssp             TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC
T ss_pred             CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC
Confidence            999999999532    4566778899999999 9999999999999999999998776  57888899999999999998


Q ss_pred             C
Q psy1859         162 D  162 (162)
Q Consensus       162 d  162 (162)
                      +
T Consensus       208 ~  208 (330)
T 2hes_X          208 T  208 (330)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.96  E-value=1.3e-27  Score=161.33  Aligned_cols=137  Identities=20%  Similarity=0.314  Sum_probs=121.2

Q ss_pred             cccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeE
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV   92 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v   92 (162)
                      ...+.+++|+|++++|++++.+|.+++|+.+..    +....+..+..         .+.+++|+|++++|++++.|+.|
T Consensus       122 ~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~----~~~~~~~~~~~---------~v~~~~~spdg~~lasg~~dg~i  188 (321)
T 3ow8_A          122 PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG----KKEYSLDTRGK---------FILSIAYSPDGKYLASGAIDGII  188 (321)
T ss_dssp             TTCCCCEEECTTSSEEEEECTTSEEEEEETTTC----SEEEEEECSSS---------CEEEEEECTTSSEEEEEETTSCE
T ss_pred             CccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC----ceeEEecCCCc---------eEEEEEECCCCCEEEEEcCCCeE
Confidence            345677999999999999999999999766543    33334444332         69999999999999999999999


Q ss_pred             EEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          93 NIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ++||+++++.+..+..|...+.++ |+|++++|++++.|+.|++||+++++.+..+.+|...|.+++|+||
T Consensus       189 ~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  259 (321)
T 3ow8_A          189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD  259 (321)
T ss_dssp             EEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             EEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCC
Confidence            999999999999999999999999 9999999999999999999999999999999999999999999986

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.96  E-value=4.7e-27  Score=159.99  Aligned_cols=141  Identities=15%  Similarity=0.158  Sum_probs=113.6

Q ss_pred             ccccccEEEEEEeeCCC-eEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEec
Q psy1859          10 SSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGG   87 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~   87 (162)
                      ..+...+.+++|+|++. .|++++.|+.|++|+....+    ....+..+.       +...+.+++|+|++ ++|++|+
T Consensus       166 ~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~-------~~~~~~~~~~~p~~~~~l~sg~  234 (344)
T 4gqb_B          166 RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK----PASQIGCSA-------PGYLPTSLAWHPQQSEVFVFGD  234 (344)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS----CEEECC-----------CCCEEEEEECSSCTTEEEEEE
T ss_pred             cCcCCceEEEEecCCCCCceeeeccccccccccccccc----eeeeeecce-------eeccceeeeecCCCCcceEEec
Confidence            34567889999999875 67899999999997655432    222222211       22268999999965 7899999


Q ss_pred             CCCeEEEEeCCCccceeeeeecccceeEE-EcCCC-CEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          88 SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEY-NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .|+.|++||+++++++..+..|...|+++ |+|++ ++|++++.|++|++||+++++++ .+.+|.+.|++++|+||
T Consensus       235 ~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~  310 (344)
T 4gqb_B          235 ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPL  310 (344)
T ss_dssp             TTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSS
T ss_pred             cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCC
Confidence            99999999999999999999999999999 99998 57999999999999999988765 46789999999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.96  E-value=6.4e-27  Score=158.97  Aligned_cols=139  Identities=22%  Similarity=0.319  Sum_probs=119.3

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .+.+.+.+++|+|+++++++|+.|+.|++|+...    ......+.+|..         .|.+++|+|++++|++++.|+
T Consensus       182 ~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~----~~~~~~~~~h~~---------~v~~v~~~p~~~~l~s~s~d~  248 (340)
T 1got_B          182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE----GMCRQTFTGHES---------DINAICFFPNGNAFATGSDDA  248 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----CSEEEEECCCSS---------CEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC----CeeEEEEcCCcC---------CEEEEEEcCCCCEEEEEcCCC
Confidence            4567789999999999999999999999966543    334444555543         799999999999999999999


Q ss_pred             eEEEEeCCCccceeeeee--cccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          91 YVNIWDGFNKKRLCQFHR--YDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~--~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .|++||++.++.+..+..  +...+.++ |+|+++++++|+.|+.|++||+.+++.+..+.+|...|.+++|+||
T Consensus       249 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~d  323 (340)
T 1got_B          249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD  323 (340)
T ss_dssp             CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred             cEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCC
Confidence            999999998877666542  23468899 9999999999999999999999999999999999999999999986

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.96  E-value=5.4e-27  Score=163.01  Aligned_cols=140  Identities=10%  Similarity=0.080  Sum_probs=124.9

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ..+...+.+++|+|++++|++|+.|+.|++|+++.    ......+.+|.         ..|.+++|+|++.+|++++.|
T Consensus       147 ~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~----~~~~~~~~~h~---------~~V~~v~~~p~~~~l~s~s~D  213 (410)
T 1vyh_C          147 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG----FECIRTMHGHD---------HNVSSVSIMPNGDHIVSASRD  213 (410)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS----SCEEECCCCCS---------SCEEEEEECSSSSEEEEEETT
T ss_pred             eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----CceeEEEcCCC---------CCEEEEEEeCCCCEEEEEeCC
Confidence            34567789999999999999999999999976643    33444555554         379999999999999999999


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +.|++||++++.++..+..|...+..+ ++|++.++++++.|+.|++||++++++...+..|...|.+++|+|+
T Consensus       214 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~  287 (410)
T 1vyh_C          214 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE  287 (410)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCS
T ss_pred             CeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCc
Confidence            999999999999999999999999999 9999999999999999999999999999999999999999999984

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.95  E-value=1.6e-26  Score=155.79  Aligned_cols=144  Identities=10%  Similarity=0.095  Sum_probs=122.0

Q ss_pred             eccccccEEEEEEeeCC-CeEEEEcCCCcEEEEEecCCcc-cceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe
Q psy1859           9 ESSLKFQTRCIKCFPNK-QGYVLSSIEGRAAVEYLDTGPE-MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG   86 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~-~~l~~~~~~g~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~   86 (162)
                      ...+.+.|.+++|+|++ ++|++|+.|++|++|++..... .......+.+|.         ..|.+++|+|++++|+++
T Consensus        13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~s~dg~~l~s~   83 (319)
T 3frx_A           13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS---------HIVQDCTLTADGAYALSA   83 (319)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCS---------SCEEEEEECTTSSEEEEE
T ss_pred             EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCc---------ccEEEEEECCCCCEEEEE
Confidence            34566778999999965 8999999999999988764221 112334445544         489999999999999999


Q ss_pred             cCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          87 GSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +.|+.|++||+.+++.+..+.+|...|.++ |+|++.++++++.|+.|++||++ ++++..+.+|...|.+++|+|+
T Consensus        84 s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~  159 (319)
T 3frx_A           84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPN  159 (319)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC
T ss_pred             eCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccC
Confidence            999999999999999999999999999999 99999999999999999999996 5667788899999999999873

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.95  E-value=1.7e-26  Score=157.76  Aligned_cols=150  Identities=21%  Similarity=0.251  Sum_probs=123.5

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeee-----------------------------
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR-----------------------------   59 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~-----------------------------   59 (162)
                      ...+...|.+++|+|++++|++|+.||.|+||+.....  ...  .+..+.                             
T Consensus        60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~--~~~--~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~  135 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN--KEH--AVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL  135 (354)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEE--EEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC--cce--EEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence            34566778999999999999999999999997654322  111  111000                             


Q ss_pred             ----------eccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcC--CCCEEEE
Q psy1859          60 ----------IKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ--EYNTFAT  126 (162)
Q Consensus        60 ----------~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~--~~~~l~~  126 (162)
                                .......|...|.+++|+|++..|++++.|+.|++||+++++.+..+..|...+.++ |+|  ++.++++
T Consensus       136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~s  215 (354)
T 2pbi_B          136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS  215 (354)
T ss_dssp             CCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEE
T ss_pred             eccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEE
Confidence                      000112367789999999999999999999999999999999999999999999999 877  5789999


Q ss_pred             ecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         127 GGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       127 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ++.|+.|++||+++++++..+..|...|++++|+|+
T Consensus       216 gs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~  251 (354)
T 2pbi_B          216 GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPS  251 (354)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             EeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCC
Confidence            999999999999999999999999999999999986

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.95  E-value=1.6e-26  Score=154.38  Aligned_cols=143  Identities=13%  Similarity=0.113  Sum_probs=118.5

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC--CCEEEEe
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE--YNTFATG   86 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~   86 (162)
                      ...+...|.+++|+|++++|++|+.|++|+||+.+...  .+....+.+|..         +|.+++|+|.  +++|+++
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~--~~~~~~l~gH~~---------~V~~v~~s~~~~g~~l~s~   73 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET--HKLIDTLTGHEG---------PVWRVDWAHPKFGTILASC   73 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC--BCCCEEECCCSS---------CEEEEEECCGGGCSEEEEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC--cEEEEEEccccC---------CeEEEEecCCCcCCEEEEE
Confidence            34567789999999999999999999999997775433  344455555544         7999999864  7999999


Q ss_pred             cCCCeEEEEeCCCcc--ceeeeeecccceeEE-EcCC--CCEEEEecCCCeEEEEeCCCce--eeeeeccCCCceeEEEe
Q psy1859          87 GSDGYVNIWDGFNKK--RLCQFHRYDTGITSL-FHQE--YNTFATGGSDGYVNIWDGFNKK--RLCQFHRYDTGITSLCF  159 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~--~~~~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~v~~  159 (162)
                      +.|+.|++||+++++  .+..+..|...+.++ |+|+  +.+|++++.|+.|++||++++.  ....+.+|...|.+++|
T Consensus        74 s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~  153 (297)
T 2pm7_B           74 SYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW  153 (297)
T ss_dssp             ETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEE
T ss_pred             cCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEee
Confidence            999999999998864  455667788999999 9997  8999999999999999998763  24556789999999999


Q ss_pred             cCC
Q psy1859         160 SYD  162 (162)
Q Consensus       160 ~pd  162 (162)
                      +|+
T Consensus       154 ~p~  156 (297)
T 2pm7_B          154 APA  156 (297)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            984

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.95  E-value=2.9e-26  Score=156.76  Aligned_cols=146  Identities=16%  Similarity=0.120  Sum_probs=118.5

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeecc----------------------------
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE----------------------------   62 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~----------------------------   62 (162)
                      .+...+.+++|+|++++|++++.|+.|++|+.....    ....+.+|...-                            
T Consensus       137 ~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~----~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~  212 (357)
T 4g56_B          137 EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA----VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR  212 (357)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTT
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc----EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECC
Confidence            456779999999999999999999999997764322    111111111000                            


Q ss_pred             --------CcccceeceEEEEecCCC-CEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCC-CEEEEecCCC
Q psy1859          63 --------DGIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEY-NTFATGGSDG  131 (162)
Q Consensus        63 --------~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~  131 (162)
                              ....|...+.+++|+|++ .+|++++.|+.|++||+++++.+..+..|...++++ |+|++ ++|++++.|+
T Consensus       213 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~  292 (357)
T 4g56_B          213 KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDC  292 (357)
T ss_dssp             SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred             CCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCC
Confidence                    123355679999999985 789999999999999999999999999999999999 99987 5799999999


Q ss_pred             eEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859         132 YVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus       132 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      +|+|||+++++.+..+ +|.+.|++++|+|
T Consensus       293 ~i~iwd~~~~~~~~~~-~H~~~V~~vafsP  321 (357)
T 4g56_B          293 TVAVLDADFSEVFRDL-SHRDFVTGVAWSP  321 (357)
T ss_dssp             CEEEECTTSCEEEEEC-CCSSCEEEEEECS
T ss_pred             EEEEEECCCCcEeEEC-CCCCCEEEEEEeC
Confidence            9999999999887655 7999999999998

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.95  E-value=2.4e-26  Score=156.15  Aligned_cols=141  Identities=15%  Similarity=0.223  Sum_probs=121.9

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      ....+.+++|+|+++++++++.|+.+++|++............+.+|         ...|.++.|++++. +++++.|+.
T Consensus        96 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h---------~~~v~~~~~~~~~~-l~s~s~d~~  165 (340)
T 1got_B           96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH---------TGYLSCCRFLDDNQ-IVTSSGDTT  165 (340)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECC---------SSCEEEEEEEETTE-EEEEETTSC
T ss_pred             CCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCC---------CccEEEEEECCCCc-EEEEECCCc
Confidence            45568899999999999999999999998776543222333334444         34799999998764 889999999


Q ss_pred             EEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          92 VNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |++||+++++.+..+..|...+.++ |+|+++++++++.|+.|++||+++++++..+.+|...|++++|+||
T Consensus       166 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~  237 (340)
T 1got_B          166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN  237 (340)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTT
T ss_pred             EEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCC
Confidence            9999999999999999999999999 9999999999999999999999999999999999999999999986

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.95  E-value=2.7e-26  Score=166.47  Aligned_cols=152  Identities=17%  Similarity=0.239  Sum_probs=124.2

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeee-----------------------------
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR-----------------------------   59 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~-----------------------------   59 (162)
                      ...+...+.+++|+|+|++|++|+.|++|+||+.....  ......+.+|.                             
T Consensus        55 ~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~--~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~  132 (611)
T 1nr0_A           55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT--HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF  132 (611)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT--CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEE
T ss_pred             ecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc--ceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEE
Confidence            34566778999999999999999999999998764322  11111111110                             


Q ss_pred             ------eccCcccceeceEEEEecCCCC-EEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCC
Q psy1859          60 ------IKEDGIEKIYPVNAISFHQEYN-TFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDG  131 (162)
Q Consensus        60 ------~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~  131 (162)
                            ......+|...|.+++|+|++. .|++++.|+.|++||...++....+.+|...|.++ |+|+|++|++++.|+
T Consensus       133 ~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~  212 (611)
T 1nr0_A          133 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG  212 (611)
T ss_dssp             ETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCC
Confidence                  0001246888999999999985 69999999999999999888888999999999999 999999999999999


Q ss_pred             eEEEEeCCCceeeeeec-------cCCCceeEEEecCC
Q psy1859         132 YVNIWDGFNKKRLCQFH-------RYDTGITSLCFSYD  162 (162)
Q Consensus       132 ~i~iwd~~~~~~~~~~~-------~~~~~v~~v~~~pd  162 (162)
                      +|++||+.+++.+..+.       +|.+.|.+++|+||
T Consensus       213 ~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd  250 (611)
T 1nr0_A          213 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD  250 (611)
T ss_dssp             CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred             cEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC
Confidence            99999999998887774       79999999999996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.6e-26  Score=156.47  Aligned_cols=144  Identities=12%  Similarity=0.187  Sum_probs=114.8

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ..+...+.+++|+|++++|++|+.|+.|++|+.+......+....+.+|.         ..|.+++|+|++.+|++++.|
T Consensus       104 ~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~---------~~v~~v~~~p~~~~l~s~s~D  174 (330)
T 2hes_X          104 EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHS---------QDVKHVIWHPSEALLASSSYD  174 (330)
T ss_dssp             C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCS---------SCEEEEEECSSSSEEEEEETT
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCC---------CceEEEEECCCCCEEEEEcCC
Confidence            34566789999999999999999999999987743221123334444444         479999999999999999999


Q ss_pred             CeEEEEeCCCc--cceeeeeecccceeEE-EcCC--CCEEEEecCCCeEEEEeCCCc--------eeeeeecc-CCCcee
Q psy1859          90 GYVNIWDGFNK--KRLCQFHRYDTGITSL-FHQE--YNTFATGGSDGYVNIWDGFNK--------KRLCQFHR-YDTGIT  155 (162)
Q Consensus        90 ~~v~~wd~~~~--~~~~~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~i~iwd~~~~--------~~~~~~~~-~~~~v~  155 (162)
                      +.|++||...+  +++..+.+|...|.++ |+|+  +.++++++.|++|++||++++        .+...+.. |...|+
T Consensus       175 ~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~  254 (330)
T 2hes_X          175 DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVY  254 (330)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEE
T ss_pred             CeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceE
Confidence            99999998765  5677888999999999 9998  778999999999999998754        34445554 889999


Q ss_pred             EEEecCC
Q psy1859         156 SLCFSYD  162 (162)
Q Consensus       156 ~v~~~pd  162 (162)
                      +++|+|+
T Consensus       255 ~v~~s~~  261 (330)
T 2hes_X          255 NVAWGFN  261 (330)
T ss_dssp             EEEECTT
T ss_pred             EEEEcCC
Confidence            9999864

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.95  E-value=4.4e-27  Score=158.39  Aligned_cols=149  Identities=15%  Similarity=0.121  Sum_probs=115.2

Q ss_pred             ccceeeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecC--CC
Q psy1859           3 YIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ--EY   80 (162)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~   80 (162)
                      .........+.+.|.+++|+|++++|++|+.|++|+||+.....  ......+.+|..         .|.+++|+|  ++
T Consensus         3 ~~~~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~--~~~~~~l~gH~~---------~V~~v~~~~~~~~   71 (316)
T 3bg1_A            3 SVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG--QILIADLRGHEG---------PVWQVAWAHPMYG   71 (316)
T ss_dssp             -----------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE--EEEEEEEECCSS---------CEEEEEECCGGGS
T ss_pred             ceeeeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC--cEEEEEEcCCCc---------cEEEEEeCCCCCC
Confidence            34455566678889999999999999999999999998776432  334445555544         799999986  37


Q ss_pred             CEEEEecCCCeEEEEeCCCcc--ceeeeeecccceeEE-EcCC--CCEEEEecCCCeEEEEeCCCce---eeeeeccCCC
Q psy1859          81 NTFATGGSDGYVNIWDGFNKK--RLCQFHRYDTGITSL-FHQE--YNTFATGGSDGYVNIWDGFNKK---RLCQFHRYDT  152 (162)
Q Consensus        81 ~~l~~~~~d~~v~~wd~~~~~--~~~~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~  152 (162)
                      ++|++++.|+.|++||+++++  ....+..|...|.++ |+|+  +.+|++++.|+.|++||++.+.   ....+..|..
T Consensus        72 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~  151 (316)
T 3bg1_A           72 NILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI  151 (316)
T ss_dssp             SCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS
T ss_pred             CEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccC
Confidence            899999999999999999864  456677899999999 9997  8899999999999999998753   2445678999


Q ss_pred             ceeEEEecCC
Q psy1859         153 GITSLCFSYD  162 (162)
Q Consensus       153 ~v~~v~~~pd  162 (162)
                      .|.+++|+|+
T Consensus       152 ~v~~~~~~~~  161 (316)
T 3bg1_A          152 GCNAVSWAPA  161 (316)
T ss_dssp             CBCCCEECCC
T ss_pred             CcceEEEccc
Confidence            9999999985

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.95  E-value=9.2e-26  Score=151.16  Aligned_cols=142  Identities=14%  Similarity=0.197  Sum_probs=120.3

Q ss_pred             eccccccEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecC--CCCEEEE
Q psy1859           9 ESSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ--EYNTFAT   85 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~l~~   85 (162)
                      ...+...+.+++|+| ++..|++|+.|+.|++|+.....    ....+..+        |...+..++|+|  ++.+|++
T Consensus       136 ~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~----~~~~~~~~--------~~~~v~~~~~~~~~~~~~l~s  203 (304)
T 2ynn_A          136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST----PNFTLTTG--------QERGVNYVDYYPLPDKPYMIT  203 (304)
T ss_dssp             ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS----CSEEEECC--------CTTCEEEEEECCSTTCCEEEE
T ss_pred             hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC----ccceeccC--------CcCcEEEEEEEEcCCCCEEEE
Confidence            344567789999999 57899999999999997764322    22222221        223688899987  6689999


Q ss_pred             ecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          86 GGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        86 ~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ++.|+.|++||+++++++..+.+|...+..+ |+|++++|++++.|+.|++||+++++.+..+..|...+.+++|+|+
T Consensus       204 ~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~  281 (304)
T 2ynn_A          204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT  281 (304)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTT
T ss_pred             EcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCC
Confidence            9999999999999999999999999999999 9999999999999999999999999999999999999999999885

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.95  E-value=8.9e-26  Score=153.48  Aligned_cols=145  Identities=11%  Similarity=0.095  Sum_probs=118.0

Q ss_pred             eccccccEEEEEE-----ee-CCCeEEEEcCCCcEEEEEecCCccc---ceeeeeeeeeeeccCcccceeceEEEEecCC
Q psy1859           9 ESSLKFQTRCIKC-----FP-NKQGYVLSSIEGRAAVEYLDTGPEM---QKMKYAFKCHRIKEDGIEKIYPVNAISFHQE   79 (162)
Q Consensus         9 ~~~~~~~~~~i~~-----~~-~~~~l~~~~~~g~i~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~   79 (162)
                      ...+...|.+++|     ++ ++++|++|+.|++|++|+.......   ......+.+         |...|.+++|+|+
T Consensus        17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~---------h~~~V~~~~~~~~   87 (343)
T 2xzm_R           17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG---------HNHFVSDLALSQE   87 (343)
T ss_dssp             EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC---------CSSCEEEEEECSS
T ss_pred             eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhcc---------CCCceEEEEECCC
Confidence            3456677899999     66 8999999999999999887643210   122223334         4458999999999


Q ss_pred             CCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeee--ccCCCceeE
Q psy1859          80 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQF--HRYDTGITS  156 (162)
Q Consensus        80 ~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~v~~  156 (162)
                      +.++++++.|+.|++||+++++.+..+..|...|.++ |+|+++++++++.|+.|++||+.........  ..|...|.+
T Consensus        88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~  167 (343)
T 2xzm_R           88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC  167 (343)
T ss_dssp             TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence            9999999999999999999999999999999999999 9999999999999999999999744332221  368889999


Q ss_pred             EEecCC
Q psy1859         157 LCFSYD  162 (162)
Q Consensus       157 v~~~pd  162 (162)
                      ++|+|+
T Consensus       168 ~~~~~~  173 (343)
T 2xzm_R          168 VRYSPI  173 (343)
T ss_dssp             EEECCC
T ss_pred             eeeccc
Confidence            999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.95  E-value=7.2e-26  Score=162.70  Aligned_cols=137  Identities=18%  Similarity=0.286  Sum_probs=119.9

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ..+...+.+++|+|+++++++++.|+.+++|+.+     .+....+.+|.         ..|.+++|+|++++|++++.|
T Consensus       423 ~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-----~~~~~~~~~~~---------~~v~~~~~spd~~~las~~~d  488 (577)
T 2ymu_A          423 TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-----GQLLQTLTGHS---------SSVRGVAFSPDGQTIASASDD  488 (577)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-----SCEEEEEECCS---------SCEEEEEECTTSCEEEEEETT
T ss_pred             cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-----CCEEEEEcCCC---------CCEEEEEEcCCCCEEEEEeCC
Confidence            3456778999999999999999999999997643     23344444444         379999999999999999999


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +.|++||. +++.+..+..|...|+++ |+|++++|++++.|+.|++||. +++++..+.+|.+.|++++|+||
T Consensus       489 ~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~d  560 (577)
T 2ymu_A          489 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD  560 (577)
T ss_dssp             SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTT
T ss_pred             CEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCC
Confidence            99999995 578888999999999999 9999999999999999999996 67888999999999999999997

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=4.5e-26  Score=153.76  Aligned_cols=149  Identities=17%  Similarity=0.197  Sum_probs=122.2

Q ss_pred             ceeeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecC--CCCE
Q psy1859           5 MQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ--EYNT   82 (162)
Q Consensus         5 ~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~   82 (162)
                      ++.....+...|.+++|+|++++|++++.||.|++|+++......+....+.+|.         ..|.+++|+|  ++.+
T Consensus         3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~d~~~   73 (351)
T 3f3f_A            3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHD---------SSIVAIDWASPEYGRI   73 (351)
T ss_dssp             CCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCS---------SCEEEEEECCGGGCSE
T ss_pred             ccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCC---------CcEEEEEEcCCCCCCE
Confidence            3455667788999999999999999999999999988875442223444444444         4799999999  5899


Q ss_pred             EEEecCCCeEEEEeCCCc---------cceeeeeecccceeEE-EcCC--CCEEEEecCCCeEEEEeCCCceeeeeec--
Q psy1859          83 FATGGSDGYVNIWDGFNK---------KRLCQFHRYDTGITSL-FHQE--YNTFATGGSDGYVNIWDGFNKKRLCQFH--  148 (162)
Q Consensus        83 l~~~~~d~~v~~wd~~~~---------~~~~~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~--  148 (162)
                      |++++.|+.|++||++.+         +.+..+..|...+.++ |+|+  +.++++++.|+.|++||+++++.+..+.  
T Consensus        74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  153 (351)
T 3f3f_A           74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT  153 (351)
T ss_dssp             EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE
T ss_pred             EEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc
Confidence            999999999999999876         4466777889999999 9999  9999999999999999998876544332  


Q ss_pred             -----------cCCCceeEEEecCC
Q psy1859         149 -----------RYDTGITSLCFSYD  162 (162)
Q Consensus       149 -----------~~~~~v~~v~~~pd  162 (162)
                                 .|...+.+++|+|+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~p~  178 (351)
T 3f3f_A          154 SEMKVLSIPPANHLQSDFCLSWCPS  178 (351)
T ss_dssp             EEEESCSCCCSSCSCCCEEEEECCC
T ss_pred             ccccccccccCCcccceeEEEeccC
Confidence                       57778999999884

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.95  E-value=3e-26  Score=156.71  Aligned_cols=141  Identities=16%  Similarity=0.181  Sum_probs=105.2

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcC------CCcEEEEEecCCccccee--eeeeeeeeeccCcccceeceEEEEecCCCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSI------EGRAAVEYLDTGPEMQKM--KYAFKCHRIKEDGIEKIYPVNAISFHQEYN   81 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~------~g~i~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~   81 (162)
                      ..++.+|.+++|+|||++|++++.      |+.+++  |+..+.....  ......         |...|.+++|+|++.
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~--~~~~~~~~~~~~~~~~~~---------~~~~V~~~~~s~d~~  107 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWV--FKDPEGAPNESLCTAGVQ---------TEAGVTDVAWVSEKG  107 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEE--ESSCC---CGGGCSEEEE---------CSSCEEEEEEETTTE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEE--EECCCCCcceeEecccCC---------CCCCEEEEEEcCCCC
Confidence            346788999999999999999987      556666  5543321211  111122         445799999999875


Q ss_pred             EEEEecCCCeEEEEeCCCcccee----eeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeE
Q psy1859          82 TFATGGSDGYVNIWDGFNKKRLC----QFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITS  156 (162)
Q Consensus        82 ~l~~~~~d~~v~~wd~~~~~~~~----~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  156 (162)
                       +++++.|+.|++||+.+++...    ....|...|.++ |+|++++|++++.|+.|++||+++++.+..+..|...|++
T Consensus       108 -~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~  186 (357)
T 4g56_B          108 -ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNC  186 (357)
T ss_dssp             -EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             -EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEE
Confidence             5567789999999999876443    233678899999 9999999999999999999999999999999999999999


Q ss_pred             EEecCC
Q psy1859         157 LCFSYD  162 (162)
Q Consensus       157 v~~~pd  162 (162)
                      ++|+|+
T Consensus       187 v~~s~~  192 (357)
T 4g56_B          187 VAACPG  192 (357)
T ss_dssp             EEECTT
T ss_pred             EEEccC
Confidence            999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.94  E-value=1.9e-25  Score=149.21  Aligned_cols=142  Identities=15%  Similarity=0.156  Sum_probs=115.4

Q ss_pred             ccccccEEEEEEeeC--CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC--CCEEEE
Q psy1859          10 SSLKFQTRCIKCFPN--KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE--YNTFAT   85 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~--~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~   85 (162)
                      ..+.+.+.+++|+++  +++|++|+.|++|+||+.....  ......+..|.         ..|.+++|+|+  +.+|++
T Consensus        50 ~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~--~~~~~~~~~h~---------~~v~~v~~~p~~~g~~l~s  118 (297)
T 2pm7_B           50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR--WSQIAVHAVHS---------ASVNSVQWAPHEYGPMLLV  118 (297)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC--BCCCEEECCCS---------SCEEEEEECCGGGCSEEEE
T ss_pred             ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc--eEEEEEeecCC---------CceeEEEeCcCCCCcEEEE
Confidence            345677899999863  8999999999999997765432  23333334443         47999999997  789999


Q ss_pred             ecCCCeEEEEeCCCccc--eeeeeecccceeEE-EcCC-------------CCEEEEecCCCeEEEEeCCCce----eee
Q psy1859          86 GGSDGYVNIWDGFNKKR--LCQFHRYDTGITSL-FHQE-------------YNTFATGGSDGYVNIWDGFNKK----RLC  145 (162)
Q Consensus        86 ~~~d~~v~~wd~~~~~~--~~~~~~~~~~v~~~-~~~~-------------~~~l~~~~~d~~i~iwd~~~~~----~~~  145 (162)
                      ++.|+.|++||++.+..  ...+..|...+.++ |+|+             +++|++++.|+.|++||+++++    ...
T Consensus       119 ~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~  198 (297)
T 2pm7_B          119 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES  198 (297)
T ss_dssp             EETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEE
T ss_pred             EECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEE
Confidence            99999999999987632  35567888999999 9996             5799999999999999998765    566


Q ss_pred             eeccCCCceeEEEecCC
Q psy1859         146 QFHRYDTGITSLCFSYD  162 (162)
Q Consensus       146 ~~~~~~~~v~~v~~~pd  162 (162)
                      .+.+|...|.+++|+|+
T Consensus       199 ~l~~H~~~V~~v~~sp~  215 (297)
T 2pm7_B          199 TLEGHSDWVRDVAWSPT  215 (297)
T ss_dssp             EECCCSSCEEEEEECCC
T ss_pred             EecCCCCceEEEEECCC
Confidence            78899999999999995

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.94  E-value=2.9e-25  Score=148.90  Aligned_cols=141  Identities=19%  Similarity=0.216  Sum_probs=121.4

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      ...+...+.+++|+|++++|++++.|+.+++|+++.    .+....+.+|..         .|.+++|+|++++|++++.
T Consensus        61 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~----~~~~~~~~~~~~---------~v~~~~~~~~~~~l~s~~~  127 (312)
T 4ery_A           61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKGHSN---------YVFCCNFNPQSNLIVSGSF  127 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----CCEEEEEECCSS---------CEEEEEECSSSSEEEEEET
T ss_pred             hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC----CcEEEEEcCCCC---------CEEEEEEcCCCCEEEEEeC
Confidence            344567789999999999999999999999976654    334444555543         7999999999999999999


Q ss_pred             CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec-cCCCceeEEEecCC
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH-RYDTGITSLCFSYD  162 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~pd  162 (162)
                      |+.|++||+++++.+..+..|...+.++ |+|+++++++++.|+.|++||+++++.+..+. .+...+..++|+|+
T Consensus       128 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (312)
T 4ery_A          128 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN  203 (312)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTT
T ss_pred             CCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCC
Confidence            9999999999999999998899999999 99999999999999999999999988777664 45668999999986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.94  E-value=2.7e-25  Score=151.78  Aligned_cols=139  Identities=19%  Similarity=0.324  Sum_probs=116.4

Q ss_pred             cccccEEEEEEee--CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859          11 SLKFQTRCIKCFP--NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus        11 ~~~~~~~~i~~~~--~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      .+...+.+++++|  +++.|++|+.||.+++|+...    .+....+..|..         .|.+++|+|++.+|++++.
T Consensus       194 ~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~----~~~~~~~~~h~~---------~v~~v~~~p~~~~l~s~s~  260 (354)
T 2pbi_B          194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS----GQCVQAFETHES---------DVNSVRYYPSGDAFASGSD  260 (354)
T ss_dssp             CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT----CCEEEEECCCSS---------CEEEEEECTTSSEEEEEET
T ss_pred             CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC----CcEEEEecCCCC---------CeEEEEEeCCCCEEEEEeC
Confidence            3456678888887  478999999999999966554    334444455443         7999999999999999999


Q ss_pred             CCeEEEEeCCCccceeeeeec--ccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRY--DTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~--~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |+.|++||++.++.+..+..+  ...+.++ |+|+++++++++.|+.|++||+.+++.+..+.+|.+.|++++|+||
T Consensus       261 D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spd  337 (354)
T 2pbi_B          261 DATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPD  337 (354)
T ss_dssp             TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTT
T ss_pred             CCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCC
Confidence            999999999988766655433  3467888 9999999999999999999999999999999999999999999997

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.94  E-value=1.3e-25  Score=155.48  Aligned_cols=143  Identities=14%  Similarity=0.131  Sum_probs=121.9

Q ss_pred             cccccEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcccc---eeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEE
Q psy1859          11 SLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQ---KMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFAT   85 (162)
Q Consensus        11 ~~~~~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~   85 (162)
                      .+...+.+++|+| ++++|++|+.||.|+||+++......   .....+.+|.         ..|.+++|+|++ .+|++
T Consensus        79 ~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~p~~~~~l~s  149 (402)
T 2aq5_A           79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT---------KRVGIVAWHPTAQNVLLS  149 (402)
T ss_dssp             CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS---------SCEEEEEECSSBTTEEEE
T ss_pred             cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC---------CeEEEEEECcCCCCEEEE
Confidence            4567889999999 89999999999999998776542100   2334444444         479999999998 79999


Q ss_pred             ecCCCeEEEEeCCCccceeee--eecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeee-ccCCCc-eeEEEec
Q psy1859          86 GGSDGYVNIWDGFNKKRLCQF--HRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQF-HRYDTG-ITSLCFS  160 (162)
Q Consensus        86 ~~~d~~v~~wd~~~~~~~~~~--~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~-v~~v~~~  160 (162)
                      ++.|+.|++||+++++.+..+  ..|...+.++ |+|++++|++++.|+.|++||+++++.+..+ ..|.+. +.++.|+
T Consensus       150 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  229 (402)
T 2aq5_A          150 AGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV  229 (402)
T ss_dssp             EETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC
T ss_pred             EcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEc
Confidence            999999999999999988888  7789999999 9999999999999999999999999998888 678775 8999999


Q ss_pred             CC
Q psy1859         161 YD  162 (162)
Q Consensus       161 pd  162 (162)
                      ||
T Consensus       230 ~~  231 (402)
T 2aq5_A          230 SE  231 (402)
T ss_dssp             ST
T ss_pred             CC
Confidence            86

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.94  E-value=3.5e-25  Score=149.31  Aligned_cols=138  Identities=14%  Similarity=0.147  Sum_probs=119.2

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .+...+.+++|+|+++++++++.|++|++|+...    .+....+.+|..         .|.+++|+|++.++++++.|+
T Consensus        63 ~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~----~~~~~~~~~h~~---------~v~~~~~~~~~~~l~s~s~D~  129 (319)
T 3frx_A           63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT----GETYQRFVGHKS---------DVMSVDIDKKASMIISGSRDK  129 (319)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----TEEEEEEECCSS---------CEEEEEECTTSCEEEEEETTS
T ss_pred             CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC----CCeeEEEccCCC---------cEEEEEEcCCCCEEEEEeCCC
Confidence            4556788999999999999999999999966543    344455555544         799999999999999999999


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcCC------CCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQE------YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .|++||++ ++.+..+..|...+.++ |+|.      +.++++++.|+.|++||+++++....+.+|...|.+++|+||
T Consensus       130 ~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~  207 (319)
T 3frx_A          130 TIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD  207 (319)
T ss_dssp             CEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTT
T ss_pred             eEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCC
Confidence            99999997 45677778899999999 9884      458999999999999999999999889999999999999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.94  E-value=1.8e-25  Score=162.22  Aligned_cols=139  Identities=19%  Similarity=0.268  Sum_probs=116.7

Q ss_pred             cccccEEEEEEeeCCC-eEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          11 SLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      .+...+.+++|+|++. .|++++.|+++++|+..  .  .+....+.+|..         .|.+++|+|++++|++++.|
T Consensus       145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~--~--~~~~~~l~~H~~---------~V~~v~fspdg~~las~s~D  211 (611)
T 1nr0_A          145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP--P--FKFKSTFGEHTK---------FVHSVRYNPDGSLFASTGGD  211 (611)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT--T--BEEEEEECCCSS---------CEEEEEECTTSSEEEEEETT
T ss_pred             CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECC--C--CeEeeeeccccC---------ceEEEEECCCCCEEEEEECC
Confidence            3456789999999987 59999999999996543  3  344445555544         79999999999999999999


Q ss_pred             CeEEEEeCCCccceeeee-------ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeee---------------
Q psy1859          90 GYVNIWDGFNKKRLCQFH-------RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQ---------------  146 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~-------~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---------------  146 (162)
                      +.|++||+.+++.+..+.       .|...|.++ |+|++++|++++.|++|++||+++++++.+               
T Consensus       212 ~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~  291 (611)
T 1nr0_A          212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII  291 (611)
T ss_dssp             SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE
T ss_pred             CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE
Confidence            999999999988877763       688999999 999999999999999999999988765433               


Q ss_pred             ----------------------------eccCCCceeEEEecCC
Q psy1859         147 ----------------------------FHRYDTGITSLCFSYD  162 (162)
Q Consensus       147 ----------------------------~~~~~~~v~~v~~~pd  162 (162)
                                                  +.+|...|++++|+||
T Consensus       292 ~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spd  335 (611)
T 1nr0_A          292 WTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSAD  335 (611)
T ss_dssp             ECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             EcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCC
Confidence                                        3468889999999986

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.94  E-value=1.5e-25  Score=154.27  Aligned_cols=140  Identities=19%  Similarity=0.272  Sum_probs=115.9

Q ss_pred             cccccEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          11 SLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        11 ~~~~~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      .+...+.++++++ ++++|++|+.|+.|++|+....   ......+.+|.         ..|.+++|+|++++|++++.|
T Consensus       203 ~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~---~~~~~~~~~h~---------~~v~~v~~~p~~~~l~s~s~D  270 (380)
T 3iz6_a          203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT---SRAVRTYHGHE---------GDINSVKFFPDGQRFGTGSDD  270 (380)
T ss_dssp             SCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT---CCCCEEECCCS---------SCCCEEEECTTSSEEEEECSS
T ss_pred             CCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC---CcceEEECCcC---------CCeEEEEEecCCCeEEEEcCC
Confidence            3456688899987 7899999999999999776532   23334444544         479999999999999999999


Q ss_pred             CeEEEEeCCCccceeeeeecc-------cceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeee----ccCCCceeEE
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYD-------TGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQF----HRYDTGITSL  157 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~-------~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~v~~v  157 (162)
                      +.|++||+++++.+..+..+.       ..++++ |+|+|+++++|+.|+.|++||+.+++.+..+    .+|.+.|+++
T Consensus       271 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l  350 (380)
T 3iz6_a          271 GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL  350 (380)
T ss_dssp             SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEE
T ss_pred             CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEE
Confidence            999999999988777665332       247889 9999999999999999999999988877766    5799999999


Q ss_pred             EecCC
Q psy1859         158 CFSYD  162 (162)
Q Consensus       158 ~~~pd  162 (162)
                      +|+||
T Consensus       351 ~~s~d  355 (380)
T 3iz6_a          351 GLSSD  355 (380)
T ss_dssp             EECSS
T ss_pred             EECCC
Confidence            99996

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.94  E-value=6.2e-26  Score=158.65  Aligned_cols=141  Identities=12%  Similarity=0.063  Sum_probs=111.6

Q ss_pred             ccccccEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecC-CCCEEEEec
Q psy1859          10 SSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ-EYNTFATGG   87 (162)
Q Consensus        10 ~~~~~~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~   87 (162)
                      ..+...|+||+|+| +++.|++|+.||.|+||+++..+  ......+.+|         ...|.+++|+| ++.+|++++
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~--~~~~~~~~gH---------~~~V~~l~f~p~~~~~l~s~s  184 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD--KPTFIKGIGA---------GGSITGLKFNPLNTNQFYASS  184 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS--CCEEECCCSS---------SCCCCEEEECSSCTTEEEEEC
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC--ceeEEEccCC---------CCCEEEEEEeCCCCCEEEEEe
Confidence            34556799999999 46789999999999997766543  3334444444         44899999998 578999999


Q ss_pred             CCCeEEEEeCCCccceeeee--ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          88 SDGYVNIWDGFNKKRLCQFH--RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .|+.|++||++.+.......  .+...+.++ |+|++++|++|+.|+.|++||++ ++.+..+.+|...|++++|+|+
T Consensus       185 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~  261 (435)
T 4e54_B          185 MEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPC  261 (435)
T ss_dssp             SSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTT
T ss_pred             CCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCC
Confidence            99999999998654322222  233456788 99999999999999999999996 4567778899999999999985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.94  E-value=4.5e-25  Score=152.56  Aligned_cols=134  Identities=16%  Similarity=0.269  Sum_probs=115.2

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEE
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI   94 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~   94 (162)
                      .+.+++|+|++++|++|+.|+.|+||+.+.    .+....+.+|..         .|.+++|+|++..|++++.|+.|++
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~----~~~~~~~~~h~~---------~v~~~~~~p~~~~l~s~s~d~~v~i  191 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIEN----RKIVMILQGHEQ---------DIYSLDYFPSGDKLVSGSGDRTVRI  191 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTT----TEEEEEECCCSS---------CEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCC----CcEEEEEccCCC---------CEEEEEEcCCCCEEEEecCCCcEEE
Confidence            488999999999999999999999966543    344445555544         7999999999999999999999999


Q ss_pred             EeCCCccceeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCceeeeee-------ccCCCceeEEEecCC
Q psy1859          95 WDGFNKKRLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQF-------HRYDTGITSLCFSYD  162 (162)
Q Consensus        95 wd~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~~~~~~v~~v~~~pd  162 (162)
                      ||+++++....+. +...+.++ |+| +++++++++.|+.|++||+++++.+..+       .+|...|++++|+||
T Consensus       192 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~  267 (393)
T 1erj_A          192 WDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD  267 (393)
T ss_dssp             EETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred             EECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCC
Confidence            9999988776665 45678888 999 9999999999999999999998877766       578899999999986

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.94  E-value=1.1e-26  Score=159.33  Aligned_cols=140  Identities=14%  Similarity=0.133  Sum_probs=111.9

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      .++.+.+++|+|++++|++++.|+.|+||+.+...  .+....+.+|.         ..|.+++|+|++++|++++.|+.
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~h~---------~~v~~~~~s~~~~~l~s~s~d~~   78 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG--WKHARTFSDHD---------KIVTCVDWAPKSNRIVTCSQDRN   78 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE--EEECCCBCCCS---------SCEEEEEECTTTCCEEEEETTSS
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc--eEEEEEEecCC---------ceEEEEEEeCCCCEEEEEeCCCe
Confidence            45678999999999999999999999998776432  24444555554         37999999999999999999999


Q ss_pred             EEEEeCCCcc---ceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCce---eeeeecc-CCCceeEEEecCC
Q psy1859          92 VNIWDGFNKK---RLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKK---RLCQFHR-YDTGITSLCFSYD  162 (162)
Q Consensus        92 v~~wd~~~~~---~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~-~~~~v~~v~~~pd  162 (162)
                      |++||+.+++   ....+..|...+.++ |+|++++|++++.|+.|++||+++++   ....+.. |...|++++|+||
T Consensus        79 v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  157 (377)
T 3dwl_C           79 AYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN  157 (377)
T ss_dssp             EEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT
T ss_pred             EEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC
Confidence            9999999876   566677889999999 99999999999999999999999876   3666776 9999999999986

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.94  E-value=3.4e-25  Score=164.61  Aligned_cols=146  Identities=17%  Similarity=0.197  Sum_probs=127.5

Q ss_pred             ccceeeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCE
Q psy1859           3 YIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT   82 (162)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~   82 (162)
                      -..++....+...+.+++|+|+++++++++.+|.|+||+++.    ......+..|..         +|.+++|+|++++
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~----~~~~~~~~~~~~---------~v~~~~~s~~~~~   69 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET----QVEVRSIQVTET---------PVRAGKFIARKNW   69 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT----TEEEEEEECCSS---------CEEEEEEEGGGTE
T ss_pred             cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC----CceEEEEecCCC---------cEEEEEEeCCCCE
Confidence            344555666778899999999999999999999999976554    334444455443         7999999999999


Q ss_pred             EEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc-eeeeeeccCCCceeEEEec
Q psy1859          83 FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK-KRLCQFHRYDTGITSLCFS  160 (162)
Q Consensus        83 l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~  160 (162)
                      |++++.|+.|++||+.+++.+..+..|...+.++ |+|+++++++++.|+.|++||+.++ .....+..|...|.+++|+
T Consensus        70 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~  149 (814)
T 3mkq_A           70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN  149 (814)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEE
Confidence            9999999999999999999999999999999999 9999999999999999999999877 6677888999999999999


Q ss_pred             C
Q psy1859         161 Y  161 (162)
Q Consensus       161 p  161 (162)
                      |
T Consensus       150 p  150 (814)
T 3mkq_A          150 P  150 (814)
T ss_dssp             T
T ss_pred             c
Confidence            8

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.94  E-value=3.9e-25  Score=151.63  Aligned_cols=139  Identities=12%  Similarity=-0.000  Sum_probs=109.3

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC-
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG-   90 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~-   90 (162)
                      ....+.+++|+|+++++++++.++ +.+|......  .........         |...|.+++|+|++..+++++.|+ 
T Consensus       175 ~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~--~~~~~~~~~---------~~~~v~~v~fspdg~~l~~~s~d~~  242 (365)
T 4h5i_A          175 TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGS--CIARKTDFD---------KNWSLSKINFIADDTVLIAASLKKG  242 (365)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCC--EEEEECCCC---------TTEEEEEEEEEETTEEEEEEEESSS
T ss_pred             CCCceEEEEEccCCceEEecccee-EEEEEeccCc--ceeeeecCC---------CCCCEEEEEEcCCCCEEEEEecCCc
Confidence            456789999999999999988665 4554332221  222222222         344799999999999999998776 


Q ss_pred             ---eEEEEeCCCccc----eeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeee-ccCCCceeEEEecC
Q psy1859          91 ---YVNIWDGFNKKR----LCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQF-HRYDTGITSLCFSY  161 (162)
Q Consensus        91 ---~v~~wd~~~~~~----~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~v~~~p  161 (162)
                         .+++|++.....    ...+..|...|+++ |+|+|++|++|+.|++|+|||+++++++.++ .+|...|++|+|+|
T Consensus       243 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp  322 (365)
T 4h5i_A          243 KGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISP  322 (365)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECT
T ss_pred             ceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECC
Confidence               688899876532    34566788899999 9999999999999999999999999998875 78999999999999


Q ss_pred             C
Q psy1859         162 D  162 (162)
Q Consensus       162 d  162 (162)
                      |
T Consensus       323 d  323 (365)
T 4h5i_A          323 D  323 (365)
T ss_dssp             T
T ss_pred             C
Confidence            7

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=7.4e-25  Score=149.74  Aligned_cols=143  Identities=13%  Similarity=0.102  Sum_probs=121.3

Q ss_pred             eeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC--CCEEEE
Q psy1859           8 RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE--YNTFAT   85 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~   85 (162)
                      ....+...+.+++|+|++++|++++.||.|+||+++...  ......+.+|..         .|.+++|+|+  +.+|++
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~---------~v~~~~~~~~~~~~~l~s   74 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--HKLIDTLTGHEG---------PVWRVDWAHPKFGTILAS   74 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSS---------CEEEEEECCGGGCSEEEE
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc--ceeeeEecCCCC---------cEEEEEeCCCCCCCEEEE
Confidence            344567889999999999999999999999998877544  444555555543         7999999987  899999


Q ss_pred             ecCCCeEEEEeCCCcc--ceeeeeecccceeEE-EcCC--CCEEEEecCCCeEEEEeCCCce--eeeeeccCCCceeEEE
Q psy1859          86 GGSDGYVNIWDGFNKK--RLCQFHRYDTGITSL-FHQE--YNTFATGGSDGYVNIWDGFNKK--RLCQFHRYDTGITSLC  158 (162)
Q Consensus        86 ~~~d~~v~~wd~~~~~--~~~~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~v~  158 (162)
                      ++.|+.|++||+.+++  .+..+..|...+.++ |+|+  +.++++++.|+.|++||++++.  ....+..|...|.+++
T Consensus        75 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~  154 (379)
T 3jrp_A           75 CSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS  154 (379)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEE
T ss_pred             eccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEE
Confidence            9999999999999886  667777788999999 9998  9999999999999999998873  3445668999999999


Q ss_pred             ecC
Q psy1859         159 FSY  161 (162)
Q Consensus       159 ~~p  161 (162)
                      |+|
T Consensus       155 ~~~  157 (379)
T 3jrp_A          155 WAP  157 (379)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            998

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.93  E-value=3e-24  Score=145.96  Aligned_cols=139  Identities=14%  Similarity=0.231  Sum_probs=113.7

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ..+...+.+++|+|++.++++++.|++|++|++..    .+....+.+|..         .|.+++|+|++++|++++.|
T Consensus        73 ~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~----~~~~~~~~~h~~---------~v~~v~~sp~~~~l~s~~~d  139 (343)
T 2xzm_R           73 TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT----GTTYKRFVGHQS---------EVYSVAFSPDNRQILSAGAE  139 (343)
T ss_dssp             CCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS----SCEEEEEECCCS---------CEEEEEECSSTTEEEEEETT
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC----CcEEEEEcCCCC---------cEEEEEECCCCCEEEEEcCC
Confidence            34556789999999999999999999999966553    334445555544         79999999999999999999


Q ss_pred             CeEEEEeCCCcccee--eeeecccceeEE-EcCCC----------CEEEEecCCCeEEEEeCCCceeeeeeccCCCceeE
Q psy1859          90 GYVNIWDGFNKKRLC--QFHRYDTGITSL-FHQEY----------NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITS  156 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~--~~~~~~~~v~~~-~~~~~----------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  156 (162)
                      +.|++||+.......  ....|...+.++ |+|++          .++++++.|+.|++||. +.+....+..|...|.+
T Consensus       140 ~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~  218 (343)
T 2xzm_R          140 REIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNH  218 (343)
T ss_dssp             SCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEE
T ss_pred             CEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceE
Confidence            999999998432221  112577889999 99987          79999999999999995 56777788899999999


Q ss_pred             EEecCC
Q psy1859         157 LCFSYD  162 (162)
Q Consensus       157 v~~~pd  162 (162)
                      ++|+||
T Consensus       219 ~~~s~~  224 (343)
T 2xzm_R          219 LSISPN  224 (343)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            999996

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.93  E-value=1.8e-24  Score=149.01  Aligned_cols=141  Identities=16%  Similarity=0.252  Sum_probs=121.1

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeee---eeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC---HRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      .....+.+++|+|++ .+++++.+|.+++|+...    .+....+..   |..      ....|.+++|+|++++|++++
T Consensus       184 ~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~h~~------~~~~i~~i~~~~~~~~l~~~~  252 (397)
T 1sq9_A          184 TPSQFATSVDISERG-LIATGFNNGTVQISELST----LRPLYNFESQHSMIN------NSNSIRSVKFSPQGSLLAIAH  252 (397)
T ss_dssp             SSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT----TEEEEEEECCC---C------CCCCEEEEEECSSTTEEEEEE
T ss_pred             CCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC----CceeEEEeccccccc------cCCccceEEECCCCCEEEEEe
Confidence            346678999999999 999999999999966543    344445554   400      023799999999999999999


Q ss_pred             CC---CeEEEEeCCCccceeeeee-------------cccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec--
Q psy1859          88 SD---GYVNIWDGFNKKRLCQFHR-------------YDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH--  148 (162)
Q Consensus        88 ~d---~~v~~wd~~~~~~~~~~~~-------------~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--  148 (162)
                      .|   +.|++||+++++.+..+..             |...+.++ |+|++++|++++.|+.|++||+++++.+..+.  
T Consensus       253 ~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  332 (397)
T 1sq9_A          253 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH  332 (397)
T ss_dssp             EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecc
Confidence            99   9999999999998888888             89999999 99999999999999999999999999999998  


Q ss_pred             ----cC---------------CCceeEEEecCC
Q psy1859         149 ----RY---------------DTGITSLCFSYD  162 (162)
Q Consensus       149 ----~~---------------~~~v~~v~~~pd  162 (162)
                          .|               ...|++++|+||
T Consensus       333 ~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~  365 (397)
T 1sq9_A          333 CDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK  365 (397)
T ss_dssp             GGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT
T ss_pred             cCcccchhhhhccccccccccCCceeEEEeccc
Confidence                77               899999999986

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.93  E-value=1.7e-24  Score=147.81  Aligned_cols=144  Identities=15%  Similarity=0.160  Sum_probs=121.4

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ..+...+.+++|+|+++++++++.++.+++|+++..............         |...|.+++|+|++++|++++.|
T Consensus        93 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d  163 (372)
T 1k8k_C           93 LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKP---------IRSTVLSLDWHPNSVLLAAGSCD  163 (372)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTT---------CCSCEEEEEECTTSSEEEEEETT
T ss_pred             ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecc---------cCCCeeEEEEcCCCCEEEEEcCC
Confidence            345677899999999999999999999999888765411111111112         44479999999999999999999


Q ss_pred             CeEEEEeCC------------------CccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccC
Q psy1859          90 GYVNIWDGF------------------NKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY  150 (162)
Q Consensus        90 ~~v~~wd~~------------------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  150 (162)
                      +.|++||++                  .++.+..+..|...+.++ |+|+++++++++.|+.|++||+++++.+..+..|
T Consensus       164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  243 (372)
T 1k8k_C          164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE  243 (372)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS
T ss_pred             CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC
Confidence            999999954                  567777888888999999 9999999999999999999999999999999999


Q ss_pred             CCceeEEEecCC
Q psy1859         151 DTGITSLCFSYD  162 (162)
Q Consensus       151 ~~~v~~v~~~pd  162 (162)
                      ...|.+++|+||
T Consensus       244 ~~~v~~~~~~~~  255 (372)
T 1k8k_C          244 TLPLLAVTFITE  255 (372)
T ss_dssp             SCCEEEEEEEET
T ss_pred             CCCeEEEEEecC
Confidence            999999999986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.93  E-value=5.6e-24  Score=143.34  Aligned_cols=140  Identities=19%  Similarity=0.285  Sum_probs=120.8

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .....+.+++|+|+++++++++.++.+++|+.+...  ......+..+.         ..+.+++|+|+++++++++.|+
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg  163 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT--PRIKAELTSSA---------PACYALAISPDSKVCFSCCSDG  163 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC----EEEEEEECSS---------SCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC--cceeeecccCC---------CceEEEEECCCCCEEEEEeCCC
Confidence            456788999999999999999999999997765433  33444444443         3799999999999999999999


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .|++||+++++.+..+..|...+.++ |+|+++++++++.|+.|++||+++++.+..+. +...+.+++|+||
T Consensus       164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~  235 (337)
T 1gxr_A          164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPT  235 (337)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTT
T ss_pred             cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCC
Confidence            99999999999898998899999999 99999999999999999999999998887765 7778999999986

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.93  E-value=2.2e-24  Score=154.97  Aligned_cols=139  Identities=18%  Similarity=0.274  Sum_probs=118.7

Q ss_pred             eeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859           8 RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      ....+...|++++|+|+|++|++|+.|+.|+||+.+     .+....+.+|..         .|.+++|+|++++|++++
T Consensus        11 ~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~-----~~~~~~l~gh~~---------~V~~l~fspdg~~las~~   76 (577)
T 2ymu_A           11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-----GQLLQTLTGHSS---------SVWGVAFSPDGQTIASAS   76 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-----SCEEEEEECCSS---------CEEEEEECTTSSEEEEEE
T ss_pred             EECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC-----CCEEEEEeCCCC---------CEEEEEECCCCCEEEEEe
Confidence            345567889999999999999999999999996532     344555666554         799999999999999999


Q ss_pred             CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          88 SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .|+.|++||. +++.+..+..|...|.++ |+|+++++++++.|+.+++|+.... .......+...|.++.|+||
T Consensus        77 ~d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~  150 (577)
T 2ymu_A           77 DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPD  150 (577)
T ss_dssp             TTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCC-EEEEECCCSSCEEEEEECTT
T ss_pred             CCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccc-eeeeccCCCCceeeeeeecC
Confidence            9999999996 577888899999999999 9999999999999999999998654 45556778889999999885

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=7.4e-25  Score=156.31  Aligned_cols=138  Identities=10%  Similarity=0.025  Sum_probs=114.8

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEE--EecCCC-CEEEEecC
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI--SFHQEY-NTFATGGS   88 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~p~~-~~l~~~~~   88 (162)
                      ....+.+++|+++ ..|++|+.||+|++|+.....   .....+.+|.         ..|.++  +|+|++ .+|++++.
T Consensus       265 h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~---~~~~~~~~H~---------~~V~sv~~~~s~~g~~~laS~S~  331 (524)
T 2j04_B          265 ADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPE---VPSFYDQVHD---------SYILSVSTAYSDFEDTVVSTVAV  331 (524)
T ss_dssp             TTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCS---SCSEEEECSS---------SCEEEEEEECCTTSCCEEEEEET
T ss_pred             CCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCC---CceEEeeccc---------ccEEEEEEEcCCCCCeEEEEecc
Confidence            4577899999986 479999999999997665321   2223344444         479999  678887 89999999


Q ss_pred             CCeEEEEeCCCccceeeeeeccc--ceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRYDT--GITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~~~--~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |+.|++||+++++....+..|..  .+.++ |+|+++.+++++.|++|++||++++.++..+.+|.+.|++|+|+||
T Consensus       332 D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~  408 (524)
T 2j04_B          332 DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRL  408 (524)
T ss_dssp             TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSS
T ss_pred             CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCC
Confidence            99999999999888777766643  47788 9999999999999999999999999888888899999999999996

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.93  E-value=5.3e-25  Score=150.91  Aligned_cols=141  Identities=14%  Similarity=0.140  Sum_probs=110.8

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .+...+.+++|+|++++|++++.|+.+++|+++... .......+..|         ...|.+++|+|++++|++++.|+
T Consensus        53 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~-~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~d~  122 (377)
T 3dwl_C           53 DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG-TWKQTLVLLRL---------NRAATFVRWSPNEDKFAVGSGAR  122 (377)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEETTSSEEEC-------CCCCEEECCCC---------SSCEEEEECCTTSSCCEEEESSS
T ss_pred             cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC-ceeeeeEeccc---------CCceEEEEECCCCCEEEEEecCC
Confidence            456778999999999999999999999996655321 01123333333         34799999999999999999999


Q ss_pred             eEEEEeCCCcc---ceeeeee-cccceeEE-EcCCCCEEEEecCCCeEEEEeCC------------------Cceeeeee
Q psy1859          91 YVNIWDGFNKK---RLCQFHR-YDTGITSL-FHQEYNTFATGGSDGYVNIWDGF------------------NKKRLCQF  147 (162)
Q Consensus        91 ~v~~wd~~~~~---~~~~~~~-~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~------------------~~~~~~~~  147 (162)
                      .|++||++.++   ....+.. |...+.++ |+|+++++++++.|+.|++||++                  .++++..+
T Consensus       123 ~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (377)
T 3dwl_C          123 VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY  202 (377)
T ss_dssp             CEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC
T ss_pred             eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc
Confidence            99999999876   3666766 89999999 99999999999999999999985                  35566667


Q ss_pred             ccCCCceeEEEecCC
Q psy1859         148 HRYDTGITSLCFSYD  162 (162)
Q Consensus       148 ~~~~~~v~~v~~~pd  162 (162)
                       .|...|++++|+||
T Consensus       203 -~~~~~v~~~~~sp~  216 (377)
T 3dwl_C          203 -PSGGWVHAVGFSPS  216 (377)
T ss_dssp             -CCSSSEEEEEECTT
T ss_pred             -cCCceEEEEEECCC
Confidence             89999999999996

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.93  E-value=1.2e-24  Score=151.01  Aligned_cols=140  Identities=16%  Similarity=0.247  Sum_probs=116.0

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ..+...+.+++|+|++++|++++.|+.|++|+.+.    .+....+.+|.         ..|.+++|+|++.+|++++.|
T Consensus       136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~----~~~~~~~~~h~---------~~v~~~~~~~~~~~l~s~~~d  202 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD----GSNPRTLIGHR---------ATVTDIAIIDRGRNVLSASLD  202 (420)
T ss_dssp             TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----CCCCEEEECCS---------SCEEEEEEETTTTEEEEEETT
T ss_pred             ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC----CcCceEEcCCC---------CcEEEEEEcCCCCEEEEEcCC
Confidence            45678899999999999999999999999976654    23344444444         379999999999999999999


Q ss_pred             CeEEEEeCCCccceeeeeec------------------------ccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceee
Q psy1859          90 GYVNIWDGFNKKRLCQFHRY------------------------DTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRL  144 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~------------------------~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~  144 (162)
                      +.|++||+++++.+..+..+                        ...+.++ |+|+++++++++.|+.|++||+++++.+
T Consensus       203 ~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~  282 (420)
T 3vl1_A          203 GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT  282 (420)
T ss_dssp             SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE
T ss_pred             CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee
Confidence            99999999998887777642                        2344555 7899999999999999999999998876


Q ss_pred             eeec-cCCCceeEEEecCC
Q psy1859         145 CQFH-RYDTGITSLCFSYD  162 (162)
Q Consensus       145 ~~~~-~~~~~v~~v~~~pd  162 (162)
                      ..+. .|...|++++|+|+
T Consensus       283 ~~~~~~~~~~v~~~~~~~~  301 (420)
T 3vl1_A          283 IQLPSKFTCSCNSLTVDGN  301 (420)
T ss_dssp             EEECCTTSSCEEEEEECSS
T ss_pred             EEcccccCCCceeEEEeCC
Confidence            6664 57889999999986

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.93  E-value=3.8e-24  Score=147.07  Aligned_cols=141  Identities=13%  Similarity=0.096  Sum_probs=115.5

Q ss_pred             eccccccEEEEEEeeCC-CeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecC-CCCEEEEe
Q psy1859           9 ESSLKFQTRCIKCFPNK-QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ-EYNTFATG   86 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~-~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~   86 (162)
                      ...+...+.+++|+|++ ++|++|+.||.|+||+++...  ........+         |...|.+++|+| ++.+|+++
T Consensus        69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~---------h~~~v~~~~~~~~~~~~l~s~  137 (383)
T 3ei3_B           69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN--KTSFIQGMG---------PGDAITGMKFNQFNTNQLFVS  137 (383)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT--CEEEECCCS---------TTCBEEEEEEETTEEEEEEEE
T ss_pred             ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc--cceeeecCC---------cCCceeEEEeCCCCCCEEEEE
Confidence            34566789999999998 899999999999997766433  333332223         444899999999 67999999


Q ss_pred             cCCCeEEEEeCCCccceeeeeec---ccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          87 GSDGYVNIWDGFNKKRLCQFHRY---DTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~~~~~~~~~---~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +.|+.|++||++. ..+..+..+   ...+.++ |+|+++++++++.|+.|++||+ +++.+..+..|...|.+++|+|+
T Consensus       138 ~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~  215 (383)
T 3ei3_B          138 SIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPR  215 (383)
T ss_dssp             ETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSS
T ss_pred             eCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCC
Confidence            9999999999985 444444433   4779999 9999999999999999999999 57788888999999999999986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.93  E-value=6.5e-24  Score=143.01  Aligned_cols=143  Identities=15%  Similarity=0.182  Sum_probs=118.9

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .+...+.+++|+|+++++++++ ||.+++|+++.... ......+...       .|...|.+++|+|+++++++++.|+
T Consensus        49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~-~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~  119 (337)
T 1gxr_A           49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN-KSPVSQLDCL-------NRDNYIRSCKLLPDGCTLIVGGEAS  119 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC-CSCSEEEECS-------CTTSBEEEEEECTTSSEEEEEESSS
T ss_pred             cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc-eeeeeccccc-------CCCCcEEEEEEcCCCCEEEEEcCCC
Confidence            4667889999999999999998 99999987765331 1111222211       1444799999999999999999999


Q ss_pred             eEEEEeCCCcc--ceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          91 YVNIWDGFNKK--RLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        91 ~v~~wd~~~~~--~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .|++||+.+++  ....+..+...+.++ |+|+++++++++.|+.|++||+++++.+..+..|...|.+++|+||
T Consensus       120 ~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~  194 (337)
T 1gxr_A          120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND  194 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             cEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCC
Confidence            99999999876  456677788899999 9999999999999999999999999999999999999999999986

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.93  E-value=1.6e-24  Score=149.26  Aligned_cols=150  Identities=21%  Similarity=0.241  Sum_probs=117.6

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeee----------------------------
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI----------------------------   60 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~----------------------------   60 (162)
                      ...+.+.|.+++|+|++++|++|+.||+|+||+.....    ....+..|..                            
T Consensus        62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~----~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~  137 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ----KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL  137 (380)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE----EEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred             ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----cceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence            34566789999999999999999999999997754322    2222222211                            


Q ss_pred             ------------ccCcccceeceEEEEecCCC-CEEEEecCCCeEEEEeCCCccceeee-----eecccceeEE-EcC-C
Q psy1859          61 ------------KEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWDGFNKKRLCQF-----HRYDTGITSL-FHQ-E  120 (162)
Q Consensus        61 ------------~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v~~wd~~~~~~~~~~-----~~~~~~v~~~-~~~-~  120 (162)
                                  .....+|...|.++.|+|++ ..|++++.|+.|++||+++++.+..+     ..|...+.++ |++ +
T Consensus       138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  217 (380)
T 3iz6_a          138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN  217 (380)
T ss_dssp             CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSS
T ss_pred             CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCC
Confidence                        00123567778888888875 67889999999999999988777665     4677889999 876 8


Q ss_pred             CCEEEEecCCCeEEEEeCC-CceeeeeeccCCCceeEEEecCC
Q psy1859         121 YNTFATGGSDGYVNIWDGF-NKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       121 ~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +.++++|+.|+.|++||++ .++.+..+.+|.+.|++++|+||
T Consensus       218 ~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~  260 (380)
T 3iz6_a          218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD  260 (380)
T ss_dssp             CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTT
T ss_pred             CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecC
Confidence            8999999999999999998 45678888999999999999996

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.93  E-value=5.9e-24  Score=144.67  Aligned_cols=141  Identities=21%  Similarity=0.299  Sum_probs=114.6

Q ss_pred             eeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEe--cCCCCEEEE
Q psy1859           8 RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF--HQEYNTFAT   85 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~~   85 (162)
                      ....+...+.+++|+|++++|++++.||.|++|+.+...    .. .+..|         ...|.+++|  +|++.+|++
T Consensus        81 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~-~~~~~---------~~~v~~~~~~~~~~~~~l~~  146 (368)
T 3mmy_A           81 AQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ----AI-QIAQH---------DAPVKTIHWIKAPNYSCVMT  146 (368)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE----EE-EEEEC---------SSCEEEEEEEECSSCEEEEE
T ss_pred             EeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC----ce-eeccc---------cCceEEEEEEeCCCCCEEEE
Confidence            344567889999999999999999999999997665432    22 22333         347999999  899999999


Q ss_pred             ecCCCeEEEEeCCCccceeee-----------------------------------------------------------
Q psy1859          86 GGSDGYVNIWDGFNKKRLCQF-----------------------------------------------------------  106 (162)
Q Consensus        86 ~~~d~~v~~wd~~~~~~~~~~-----------------------------------------------------------  106 (162)
                      ++.|+.|++||+++++.+..+                                                           
T Consensus       147 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (368)
T 3mmy_A          147 GSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN  226 (368)
T ss_dssp             EETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS
T ss_pred             ccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC
Confidence            999999999999865432211                                                           


Q ss_pred             -------------------------------eeccc------------ceeEE-EcCCCCEEEEecCCCeEEEEeCCCce
Q psy1859         107 -------------------------------HRYDT------------GITSL-FHQEYNTFATGGSDGYVNIWDGFNKK  142 (162)
Q Consensus       107 -------------------------------~~~~~------------~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~  142 (162)
                                                     ..|..            .+.++ |+|++++|++++.|+.|++||+++++
T Consensus       227 ~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~  306 (368)
T 3mmy_A          227 KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART  306 (368)
T ss_dssp             CEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             CCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc
Confidence                                           11222            58888 99999999999999999999999999


Q ss_pred             eeeeeccCCCceeEEEecCC
Q psy1859         143 RLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       143 ~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ++..+..|...|++++|+||
T Consensus       307 ~~~~~~~~~~~v~~~~~s~~  326 (368)
T 3mmy_A          307 KLKTSEQLDQPISACCFNHN  326 (368)
T ss_dssp             EEEECCCCSSCEEEEEECTT
T ss_pred             EEEEecCCCCCceEEEECCC
Confidence            99999999999999999996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.93  E-value=6.7e-24  Score=146.69  Aligned_cols=144  Identities=16%  Similarity=0.200  Sum_probs=114.6

Q ss_pred             ccccEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          12 LKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        12 ~~~~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      ....+.+++++| +++++++++.|+.|++|+....    .....+....  ....+|...|.+++|+|++++|++++.|+
T Consensus       205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~----~~~~~~~~~~--~~~~~h~~~v~~v~~~~~g~~l~s~s~d~  278 (393)
T 1erj_A          205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG----FLVERLDSEN--ESGTGHKDSVYSVVFTRDGQSVVSGSLDR  278 (393)
T ss_dssp             CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC----CEEEEEC--------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC----cEEEeecccc--cCCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            456688999999 8999999999999999665432    2222221110  11234666899999999999999999999


Q ss_pred             eEEEEeCCCc------------cceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEE
Q psy1859          91 YVNIWDGFNK------------KRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL  157 (162)
Q Consensus        91 ~v~~wd~~~~------------~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v  157 (162)
                      .|++||+++.            .+...+.+|...+.++ |+|++++|++++.|+.|++||+++++.+..+.+|...|.++
T Consensus       279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v  358 (393)
T 1erj_A          279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV  358 (393)
T ss_dssp             EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence            9999999763            2344566788899999 99999999999999999999999999999999999999999


Q ss_pred             EecC
Q psy1859         158 CFSY  161 (162)
Q Consensus       158 ~~~p  161 (162)
                      +|+|
T Consensus       359 ~~~~  362 (393)
T 1erj_A          359 AVAN  362 (393)
T ss_dssp             EECS
T ss_pred             EecC
Confidence            9986

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.93  E-value=4.9e-24  Score=156.61  Aligned_cols=145  Identities=12%  Similarity=0.115  Sum_probs=118.8

Q ss_pred             eccccccEEEEEEeeC-CCeEEEEcCCCcEEEEEecCCccc-ceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe
Q psy1859           9 ESSLKFQTRCIKCFPN-KQGYVLSSIEGRAAVEYLDTGPEM-QKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG   86 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~   86 (162)
                      ...+.+.|.+++++|+ +++|++|+.|+.|++|+++..... ......+.+         |...|.+++|+|++++|+++
T Consensus       378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~---------h~~~v~~v~~s~~g~~l~sg  448 (694)
T 3dm0_A          378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG---------HSHFVEDVVLSSDGQFALSG  448 (694)
T ss_dssp             EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEEC---------CSSCEEEEEECTTSSEEEEE
T ss_pred             cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecC---------CCCcEEEEEECCCCCEEEEE
Confidence            4456778899999986 478999999999999877643211 112223344         44489999999999999999


Q ss_pred             cCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeee---ccCCCceeEEEecCC
Q psy1859          87 GSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQF---HRYDTGITSLCFSYD  162 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~v~~~pd  162 (162)
                      +.|+.|++||+.+++.+..+..|...|.++ |+|++++|++++.|++|++||+.........   .+|...|.+++|+|+
T Consensus       449 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  528 (694)
T 3dm0_A          449 SWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN  528 (694)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred             eCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence            999999999999999999999999999999 9999999999999999999998655433222   468889999999985

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.93  E-value=4.6e-24  Score=164.62  Aligned_cols=140  Identities=19%  Similarity=0.191  Sum_probs=124.7

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ..+...+.+++|+|+++++++|+.||.|++|+...    ......+.+|..         .|.+++|+|+++++++++.|
T Consensus       612 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~----~~~~~~~~~h~~---------~v~~~~~s~~~~~l~s~~~d  678 (1249)
T 3sfz_A          612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET----GEKLLDIKAHED---------EVLCCAFSSDDSYIATCSAD  678 (1249)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----CCEEEEECCCSS---------CEEEEEECTTSSEEEEEETT
T ss_pred             ecccccEEEEEECCCCCEEEEEeCCCeEEEEECCC----CCEEEEeccCCC---------CEEEEEEecCCCEEEEEeCC
Confidence            44667899999999999999999999999966543    344455555544         79999999999999999999


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcC--CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ--EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +.|++||+.+++.+..+..|...+.++ |+|  ++.++++++.|+.|++||+++++++..+.+|.+.|++++|+||
T Consensus       679 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~  754 (1249)
T 3sfz_A          679 KKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD  754 (1249)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSS
T ss_pred             CeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecC
Confidence            999999999999999999999999999 999  5668999999999999999999999999999999999999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.93  E-value=8.2e-24  Score=143.95  Aligned_cols=148  Identities=10%  Similarity=0.065  Sum_probs=121.8

Q ss_pred             eeeccccccEEEEEEeeC----CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC---
Q psy1859           7 RRESSLKFQTRCIKCFPN----KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE---   79 (162)
Q Consensus         7 ~~~~~~~~~~~~i~~~~~----~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---   79 (162)
                      .....+...+.+++|+|+    ...+++++.++.|++|++...    .....+..+...    .|...|.+++|+|+   
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~----~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~   83 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ----GEIRLLQSYVDA----DADENFYTCAWTYDSNT   83 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG----GCEEEEEEEECS----CTTCCEEEEEEEECTTT
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC----cEEEeeeecccc----CCCCcEEEEEeccCCCC
Confidence            344567788999999984    456777777789999776542    233333433321    14457999999999   


Q ss_pred             -CCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCceeeeee---ccCCCc
Q psy1859          80 -YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQF---HRYDTG  153 (162)
Q Consensus        80 -~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~  153 (162)
                       +.+|++++.|+.|++||+.+++.+..+..|...+.++ |+| ++.++++++.|+.|++||+++++.+..+   ..|...
T Consensus        84 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  163 (366)
T 3k26_A           84 SHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE  163 (366)
T ss_dssp             CCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC
T ss_pred             CCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc
Confidence             6699999999999999999999999999999999999 999 9999999999999999999999988887   689999


Q ss_pred             eeEEEecCC
Q psy1859         154 ITSLCFSYD  162 (162)
Q Consensus       154 v~~v~~~pd  162 (162)
                      |.+++|+|+
T Consensus       164 v~~~~~~~~  172 (366)
T 3k26_A          164 VLSADYDLL  172 (366)
T ss_dssp             EEEEEECTT
T ss_pred             eeEEEECCC
Confidence            999999986

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.93  E-value=2.9e-24  Score=147.32  Aligned_cols=122  Identities=7%  Similarity=0.027  Sum_probs=97.5

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCc--EEEEEecCCccccee--eeeeeeeeeccCcccceeceEEEEecCCCCEEEEe
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGR--AAVEYLDTGPEMQKM--KYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG   86 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~--i~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~   86 (162)
                      .....+.+++|+|+++.+++++.++.  +.+|.|+........  ...+.+         |...|++++|+|++++|++|
T Consensus       217 ~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~---------~~~~V~~~~~Spdg~~lasg  287 (365)
T 4h5i_A          217 DKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN---------RFKGITSMDVDMKGELAVLA  287 (365)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES---------SCSCEEEEEECTTSCEEEEE
T ss_pred             CCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC---------CCCCeEeEEECCCCCceEEE
Confidence            34566889999999999999987763  344445543311221  122222         44489999999999999999


Q ss_pred             cCCCeEEEEeCCCccceeee-eecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc
Q psy1859          87 GSDGYVNIWDGFNKKRLCQF-HRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK  141 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~~~~~~-~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~  141 (162)
                      +.|+.|+|||+++++++..+ .+|...|+++ |+|||++|++++.|++|+|||+...
T Consensus       288 s~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          288 SNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             ETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             cCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99999999999999988875 6899999999 9999999999999999999999643

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.93  E-value=7.5e-24  Score=142.86  Aligned_cols=144  Identities=15%  Similarity=0.149  Sum_probs=115.7

Q ss_pred             ccccccEEEEEEee--CCCeEEEEcCCCcEEEEEecCCcccc-----eeeeeeeeeeeccCcccceeceEEEEecCC--C
Q psy1859          10 SSLKFQTRCIKCFP--NKQGYVLSSIEGRAAVEYLDTGPEMQ-----KMKYAFKCHRIKEDGIEKIYPVNAISFHQE--Y   80 (162)
Q Consensus        10 ~~~~~~~~~i~~~~--~~~~l~~~~~~g~i~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~   80 (162)
                      ..+...+.+++|+|  ++++|++++.||.|++|+.+......     +....+..         |...|.+++|+|+  +
T Consensus        54 ~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~  124 (351)
T 3f3f_A           54 RAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLND---------SKGSLYSVKFAPAHLG  124 (351)
T ss_dssp             ECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECC---------CSSCEEEEEECCGGGC
T ss_pred             ccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecc---------cCCceeEEEEcCCCCC
Confidence            34667899999999  69999999999999998876543111     22333333         3447999999999  9


Q ss_pred             CEEEEecCCCeEEEEeCCCccc----------------------------------------------------------
Q psy1859          81 NTFATGGSDGYVNIWDGFNKKR----------------------------------------------------------  102 (162)
Q Consensus        81 ~~l~~~~~d~~v~~wd~~~~~~----------------------------------------------------------  102 (162)
                      .++++++.|+.|++||+++++.                                                          
T Consensus       125 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~  204 (351)
T 3f3f_A          125 LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL  204 (351)
T ss_dssp             SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE
T ss_pred             cEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce
Confidence            9999999999999999876532                                                          


Q ss_pred             --eeeeeecccceeEE-EcCCC----CEEEEecCCCeEEEEeCCCc----------------------------------
Q psy1859         103 --LCQFHRYDTGITSL-FHQEY----NTFATGGSDGYVNIWDGFNK----------------------------------  141 (162)
Q Consensus       103 --~~~~~~~~~~v~~~-~~~~~----~~l~~~~~d~~i~iwd~~~~----------------------------------  141 (162)
                        +..+..|...+.++ |+|++    ++|++++.|+.|++||++++                                  
T Consensus       205 ~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (351)
T 3f3f_A          205 HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNT  284 (351)
T ss_dssp             EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------
T ss_pred             eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccc
Confidence              22334577889999 99998    89999999999999999864                                  


Q ss_pred             ------------eeeeeeccCCCceeEEEecCC
Q psy1859         142 ------------KRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       142 ------------~~~~~~~~~~~~v~~v~~~pd  162 (162)
                                  +.+..+.+|...|++++|+||
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~  317 (351)
T 3f3f_A          285 EEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT  317 (351)
T ss_dssp             ------CCSEEEEEEEEECTTSSCEEEEEECSS
T ss_pred             ceeeeecccccccEEEEEecccccEEEEEEcCC
Confidence                        567777889999999999986

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.9e-24  Score=146.85  Aligned_cols=140  Identities=8%  Similarity=0.048  Sum_probs=108.9

Q ss_pred             ccccccEEEEEEee--CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859          10 SSLKFQTRCIKCFP--NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus        10 ~~~~~~~~~i~~~~--~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      ......+.+++++|  +++++++++.||.+++|++....    .......+        |...+.+++|+|++.+|++|+
T Consensus       122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~----~~~~~~~~--------~~~~i~~~~~~pdg~~lasg~  189 (343)
T 3lrv_A          122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS----QYIVHSAK--------SDVEYSSGVLHKDSLLLALYS  189 (343)
T ss_dssp             CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC----EEEEECCC--------SSCCCCEEEECTTSCEEEEEC
T ss_pred             cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc----EEEEEecC--------CCCceEEEEECCCCCEEEEEc
Confidence            34447799999999  99999999999999997765433    22222122        223699999999999999999


Q ss_pred             CCCeEEEEeCCCccce-eeeee-cccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeecc---CCCcee--EEEe
Q psy1859          88 SDGYVNIWDGFNKKRL-CQFHR-YDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR---YDTGIT--SLCF  159 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~-~~~~~-~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~--~v~~  159 (162)
                      .|+.|++||+++++.+ ..+.. |...|.++ |+|++.+|++++.+ .|++||+++++.+..+..   |...+.  +++|
T Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (343)
T 3lrv_A          190 PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDI  268 (343)
T ss_dssp             TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSSCCCBC-----CCEEEEE
T ss_pred             CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceeecccccccccccceEEEE
Confidence            9999999999998877 77777 89999999 99999999999954 999999998876655543   334444  5999


Q ss_pred             cCC
Q psy1859         160 SYD  162 (162)
Q Consensus       160 ~pd  162 (162)
                      +|+
T Consensus       269 ~~~  271 (343)
T 3lrv_A          269 DDS  271 (343)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            986

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.93  E-value=5.6e-24  Score=156.29  Aligned_cols=141  Identities=13%  Similarity=0.141  Sum_probs=117.7

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      ...+...+.+++|+|++++|++|+.||.|+||++..    ......+.+|..         .|.+++|+|++++|++++.
T Consensus       426 ~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~----~~~~~~~~~h~~---------~v~~~~~s~~~~~l~s~s~  492 (694)
T 3dm0_A          426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA----GVSTRRFVGHTK---------DVLSVAFSLDNRQIVSASR  492 (694)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----TEEEEEEECCSS---------CEEEEEECTTSSCEEEEET
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC----CcceeEEeCCCC---------CEEEEEEeCCCCEEEEEeC
Confidence            344567789999999999999999999999966543    334444555544         7999999999999999999


Q ss_pred             CCeEEEEeCCCccceee---eeecccceeEE-EcCCC--CEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          89 DGYVNIWDGFNKKRLCQ---FHRYDTGITSL-FHQEY--NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~---~~~~~~~v~~~-~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |+.|++||.........   ...|...+.++ |+|++  ..+++++.|+.|++||+++++....+.+|.+.|++++|+||
T Consensus       493 D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd  572 (694)
T 3dm0_A          493 DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD  572 (694)
T ss_dssp             TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCC
Confidence            99999999875433222   23577889999 99986  58999999999999999999999999999999999999986

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.93  E-value=1.1e-23  Score=145.82  Aligned_cols=138  Identities=13%  Similarity=0.193  Sum_probs=118.8

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ......+.+++|+|++++|++++.||.+++|+.+.    .+....+..|.         ..|.+++|+  +..+++++.|
T Consensus       131 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~---------~~v~~~~~~--~~~l~~~~~d  195 (401)
T 4aez_A          131 TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES----QTKLRTMAGHQ---------ARVGCLSWN--RHVLSSGSRS  195 (401)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT----CCEEEEECCCS---------SCEEEEEEE--TTEEEEEETT
T ss_pred             cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC----CeEEEEecCCC---------CceEEEEEC--CCEEEEEcCC
Confidence            33567899999999999999999999999966543    33444444444         379999994  5799999999


Q ss_pred             CeEEEEeCCC-ccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          90 GYVNIWDGFN-KKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        90 ~~v~~wd~~~-~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +.|++||++. ...+..+..|...+.++ |+|++.++++++.|+.|++||+++++.+..+..|...|.+++|+|+
T Consensus       196 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~  270 (401)
T 4aez_A          196 GAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPW  270 (401)
T ss_dssp             SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTT
T ss_pred             CCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCC
Confidence            9999999994 56677888899999999 9999999999999999999999999999889899999999999985

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.92  E-value=1e-24  Score=146.88  Aligned_cols=141  Identities=13%  Similarity=0.163  Sum_probs=113.3

Q ss_pred             cccccEEEEEEee--CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC--CCEEEEe
Q psy1859          11 SLKFQTRCIKCFP--NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE--YNTFATG   86 (162)
Q Consensus        11 ~~~~~~~~i~~~~--~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~   86 (162)
                      .+.+.+.+++|+|  ++++|++|+.|++|++|+.....  ......+.+|.         ..|.+++|+|+  +.+|+++
T Consensus        55 gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~--~~~~~~~~~h~---------~~V~~v~~~p~~~g~~lasg  123 (316)
T 3bg1_A           55 GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT--WEKSHEHAGHD---------SSVNSVCWAPHDYGLILACG  123 (316)
T ss_dssp             CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC--CCEEEEECCCS---------SCCCEEEECCTTTCSCEEEE
T ss_pred             CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc--ceEEEEccCCC---------CceEEEEECCCCCCcEEEEE
Confidence            4567789999986  48999999999999997654322  23344444444         47999999998  7899999


Q ss_pred             cCCCeEEEEeCCCccc---eeeeeecccceeEE-EcCC-----------------CCEEEEecCCCeEEEEeCCCc---e
Q psy1859          87 GSDGYVNIWDGFNKKR---LCQFHRYDTGITSL-FHQE-----------------YNTFATGGSDGYVNIWDGFNK---K  142 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~~---~~~~~~~~~~v~~~-~~~~-----------------~~~l~~~~~d~~i~iwd~~~~---~  142 (162)
                      +.|+.|++||++.+..   ...+..|...+.++ |+|+                 +++|++++.|+.|++||++.+   +
T Consensus       124 s~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~  203 (316)
T 3bg1_A          124 SSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK  203 (316)
T ss_dssp             CSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEE
T ss_pred             cCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccc
Confidence            9999999999987532   34556778888888 9997                 478999999999999999754   4


Q ss_pred             eeeeeccCCCceeEEEecCC
Q psy1859         143 RLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       143 ~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .+..+.+|...|.+++|+|+
T Consensus       204 ~~~~l~~h~~~V~~v~~sp~  223 (316)
T 3bg1_A          204 EEQKLEAHSDWVRDVAWAPS  223 (316)
T ss_dssp             EEECCBCCSSCEEEEECCCC
T ss_pred             eeeecccCCCceEEEEecCC
Confidence            67778899999999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.92  E-value=1e-23  Score=144.89  Aligned_cols=138  Identities=17%  Similarity=0.191  Sum_probs=115.9

Q ss_pred             cccccEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          11 SLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        11 ~~~~~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      .+...+.+++|+| ++++|++++.|+.|++|+....     ....+..+..      |...|.+++|+|++++|++++.|
T Consensus       116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d  184 (383)
T 3ei3_B          116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-----VIQVFAKTDS------WDYWYCCVDVSVSRQMLATGDST  184 (383)
T ss_dssp             STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-----EEEEEECCCC------SSCCEEEEEEETTTTEEEEEETT
T ss_pred             CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-----ceEEEeccCC------CCCCeEEEEECCCCCEEEEECCC
Confidence            4678899999999 7899999999999999776632     2222222221      33479999999999999999999


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCC-EEEEecCCCeEEEEeCCC----ceeeeeeccCCCceeEEEecC
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYN-TFATGGSDGYVNIWDGFN----KKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      +.|++||+ +++.+..+..|...+.++ |+|+++ ++++++.|+.|++||+++    +..+..+ .|...|++++|+|
T Consensus       185 ~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~  260 (383)
T 3ei3_B          185 GRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNP  260 (383)
T ss_dssp             SEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECT
T ss_pred             CCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcC
Confidence            99999999 477888888999999999 999999 999999999999999987    5566666 6999999999998

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.8e-23  Score=141.90  Aligned_cols=142  Identities=15%  Similarity=0.161  Sum_probs=117.6

Q ss_pred             ccccccEEEEEEeeC--CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC--CCEEEE
Q psy1859          10 SSLKFQTRCIKCFPN--KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE--YNTFAT   85 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~--~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~   85 (162)
                      ..+...+.+++|+++  +++|++++.||.|++|+.+...  ......+..|.         ..|.+++|+|+  +.+|++
T Consensus        52 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~---------~~v~~~~~~~~~~~~~l~~  120 (379)
T 3jrp_A           52 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR--WSQIAVHAVHS---------ASVNSVQWAPHEYGPLLLV  120 (379)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE--EEEEEEECCCS---------SCEEEEEECCGGGCSEEEE
T ss_pred             cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc--eeEeeeecCCC---------cceEEEEeCCCCCCCEEEE
Confidence            345678899999977  8999999999999998776533  33444444443         37999999999  899999


Q ss_pred             ecCCCeEEEEeCCCcc--ceeeeeecccceeEE-EcC-------------CCCEEEEecCCCeEEEEeCCCce----eee
Q psy1859          86 GGSDGYVNIWDGFNKK--RLCQFHRYDTGITSL-FHQ-------------EYNTFATGGSDGYVNIWDGFNKK----RLC  145 (162)
Q Consensus        86 ~~~d~~v~~wd~~~~~--~~~~~~~~~~~v~~~-~~~-------------~~~~l~~~~~d~~i~iwd~~~~~----~~~  145 (162)
                      ++.|+.|++||++...  ....+..|...+.++ |+|             ++.++++++.|+.|++||++++.    .+.
T Consensus       121 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  200 (379)
T 3jrp_A          121 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES  200 (379)
T ss_dssp             EETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEE
T ss_pred             ecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEE
Confidence            9999999999999874  344566788899999 999             69999999999999999997653    456


Q ss_pred             eeccCCCceeEEEecCC
Q psy1859         146 QFHRYDTGITSLCFSYD  162 (162)
Q Consensus       146 ~~~~~~~~v~~v~~~pd  162 (162)
                      .+..|...|.+++|+||
T Consensus       201 ~~~~h~~~v~~~~~sp~  217 (379)
T 3jrp_A          201 TLEGHSDWVRDVAWSPT  217 (379)
T ss_dssp             EECCCSSCEEEEEECCC
T ss_pred             EEecccCcEeEEEECCC
Confidence            67789999999999986

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=8.4e-24  Score=159.13  Aligned_cols=138  Identities=9%  Similarity=0.043  Sum_probs=114.6

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      ...+...+.+++|+|++++|++|+.||.|+||+.+  .  ......+.          |...|.+++|+| +++|++++.
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~--~--~~~~~~~~----------~~~~V~~l~fsp-g~~L~S~s~   77 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQ--Q--VEVVIKLE----------DRSAIKEMRFVK-GIYLVVINA   77 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECST--T--CEEEEECS----------SCCCEEEEEEET-TTEEEEEET
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCC--C--cEEEEEcC----------CCCCEEEEEEcC-CCEEEEEEC
Confidence            34567889999999999999999999999996543  2  22222211          334799999999 889999999


Q ss_pred             CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceee-----------eeeccCCCceeE
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRL-----------CQFHRYDTGITS  156 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~v~~  156 (162)
                      |+.|++||+++++.+..+. +...++++ |+|+++++++|+.||.|++||+++++..           ..+.+|.+.|++
T Consensus        78 D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~s  156 (902)
T 2oaj_A           78 KDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVS  156 (902)
T ss_dssp             TCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCE
T ss_pred             cCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEE
Confidence            9999999999998888775 66789999 9999999999999999999999988753           234678899999


Q ss_pred             EEecCC
Q psy1859         157 LCFSYD  162 (162)
Q Consensus       157 v~~~pd  162 (162)
                      ++|+|+
T Consensus       157 l~~sp~  162 (902)
T 2oaj_A          157 IQWNPR  162 (902)
T ss_dssp             EEEETT
T ss_pred             EEEccC
Confidence            999984

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.92  E-value=1.9e-23  Score=145.98  Aligned_cols=143  Identities=21%  Similarity=0.276  Sum_probs=116.9

Q ss_pred             cccccEEEEEEeeCCC-eEEEEcCCCcEEEEEecCCccccee---eeeeeeeeeccCcccceeceEEEEecC-CCCEEEE
Q psy1859          11 SLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQKM---KYAFKCHRIKEDGIEKIYPVNAISFHQ-EYNTFAT   85 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~   85 (162)
                      .+...+.+++|+|++. +|++++.||.|++|++.........   ...+..         |...|.+++|+| ++.+|++
T Consensus       179 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---------h~~~v~~v~~~p~~~~~l~s  249 (430)
T 2xyi_A          179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG---------HTAVVEDVAWHLLHESLFGS  249 (430)
T ss_dssp             CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECC---------CSSCEEEEEECSSCTTEEEE
T ss_pred             CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecC---------CCCCEeeeEEeCCCCCEEEE
Confidence            3456678999999988 9999999999999877653211111   122222         445799999999 5689999


Q ss_pred             ecCCCeEEEEeCCCc---cceeeeeecccceeEE-EcCCCC-EEEEecCCCeEEEEeCCC-ceeeeeeccCCCceeEEEe
Q psy1859          86 GGSDGYVNIWDGFNK---KRLCQFHRYDTGITSL-FHQEYN-TFATGGSDGYVNIWDGFN-KKRLCQFHRYDTGITSLCF  159 (162)
Q Consensus        86 ~~~d~~v~~wd~~~~---~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~v~~  159 (162)
                      ++.|+.|++||++++   +.+..+..|...+.++ |+|++. ++++++.|+.|++||+++ +..+..+..|...|++++|
T Consensus       250 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~  329 (430)
T 2xyi_A          250 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW  329 (430)
T ss_dssp             EETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEE
T ss_pred             EeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEE
Confidence            999999999999986   5677777899999999 999887 688999999999999997 5668888889999999999


Q ss_pred             cCC
Q psy1859         160 SYD  162 (162)
Q Consensus       160 ~pd  162 (162)
                      +|+
T Consensus       330 sp~  332 (430)
T 2xyi_A          330 SPH  332 (430)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.92  E-value=2.4e-23  Score=142.16  Aligned_cols=142  Identities=15%  Similarity=0.139  Sum_probs=116.7

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ..+...+.+++|+|++++|++++.||.+++|+++...  ......+..+         ...|.+++|+|++++|++++.|
T Consensus        49 ~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~d  117 (372)
T 1k8k_C           49 KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT--WKPTLVILRI---------NRAARCVRWAPNEKKFAVGSGS  117 (372)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE--EEEEEECCCC---------SSCEEEEEECTTSSEEEEEETT
T ss_pred             cCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe--eeeeEEeecC---------CCceeEEEECCCCCEEEEEeCC
Confidence            3456788999999999999999999999998775433  2223222333         3479999999999999999999


Q ss_pred             CeEEEEeCCCccc---eeee-eecccceeEE-EcCCCCEEEEecCCCeEEEEeCC------------------Cceeeee
Q psy1859          90 GYVNIWDGFNKKR---LCQF-HRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGF------------------NKKRLCQ  146 (162)
Q Consensus        90 ~~v~~wd~~~~~~---~~~~-~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~------------------~~~~~~~  146 (162)
                      +.|++||++.++.   ...+ ..|...+.++ |+|+++++++++.|+.|++||++                  .++.+..
T Consensus       118 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (372)
T 1k8k_C          118 RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE  197 (372)
T ss_dssp             SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE
T ss_pred             CEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEe
Confidence            9999999988763   2222 4567889999 99999999999999999999953                  6778888


Q ss_pred             eccCCCceeEEEecCC
Q psy1859         147 FHRYDTGITSLCFSYD  162 (162)
Q Consensus       147 ~~~~~~~v~~v~~~pd  162 (162)
                      +..|...|.+++|+||
T Consensus       198 ~~~~~~~v~~~~~~~~  213 (372)
T 1k8k_C          198 SSSSCGWVHGVCFSAN  213 (372)
T ss_dssp             CCCCSSCEEEEEECSS
T ss_pred             cCCCCCeEEEEEECCC
Confidence            8899999999999986

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.92  E-value=4.4e-23  Score=140.38  Aligned_cols=140  Identities=16%  Similarity=0.139  Sum_probs=114.5

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      ...+...+.+++|+|++++|++++.||.|++|++..    .+....+..|..         .|.+++|+|++++|++++.
T Consensus        28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~h~~---------~v~~~~~~~~~~~l~s~~~   94 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN----GERLGTLDGHTG---------TIWSIDVDCFTKYCVTGSA   94 (369)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT----CCEEEEECCCSS---------CEEEEEECTTSSEEEEEET
T ss_pred             EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC----chhhhhhhhcCC---------cEEEEEEcCCCCEEEEEeC
Confidence            455678899999999999999999999999976543    334444455443         7999999999999999999


Q ss_pred             CCeEEEEeCCCccceeeeeeccc---------------------------------------------------------
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRYDT---------------------------------------------------------  111 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~~~---------------------------------------------------------  111 (162)
                      |+.|++||+.+++.+..+. +..                                                         
T Consensus        95 dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  173 (369)
T 3zwl_B           95 DYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE  173 (369)
T ss_dssp             TTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred             CCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence            9999999998765544332 111                                                         


Q ss_pred             ---ceeEE-EcCCCCEEEEecCCCeEEEEeCCC-ceeeeeeccCCCceeEEEecCC
Q psy1859         112 ---GITSL-FHQEYNTFATGGSDGYVNIWDGFN-KKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       112 ---~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                         .+.++ |+|+++++++++.|+.|++||+++ ++.+..+..|...|.+++|+||
T Consensus       174 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  229 (369)
T 3zwl_B          174 GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPD  229 (369)
T ss_dssp             TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTT
T ss_pred             CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCC
Confidence               56677 888888999999999999999998 7888888899999999999986

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.92  E-value=1.8e-24  Score=151.33  Aligned_cols=140  Identities=18%  Similarity=0.179  Sum_probs=112.1

Q ss_pred             cccccEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          11 SLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        11 ~~~~~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      .+.+.|.+|+|+| ++++|++++.||+|++|++....  .....  ..+.       +...+.+++|+|++.+|++|+.|
T Consensus       162 gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~--~~~~-------~~~~~~~~~~~~~~~~l~~g~~d  230 (435)
T 4e54_B          162 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI--LRVFA--SSDT-------INIWFCSLDVSASSRMVVTGDNV  230 (435)
T ss_dssp             SSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE--EEEEE--CCSS-------CSCCCCCEEEETTTTEEEEECSS
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc--eeEEe--ccCC-------CCccEEEEEECCCCCEEEEEeCC
Confidence            4567789999998 68899999999999997765322  21111  1111       22357899999999999999999


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCC-EEEEecCCCeEEEEeCCCceeeee---eccCCCceeEEEecCC
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYN-TFATGGSDGYVNIWDGFNKKRLCQ---FHRYDTGITSLCFSYD  162 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~v~~v~~~pd  162 (162)
                      |.|++||++ ++.+..+..|...|.++ |+|++. ++++++.|+.|++||+++.+....   ..+|...|++++|+||
T Consensus       231 g~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spd  307 (435)
T 4e54_B          231 GNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPD  307 (435)
T ss_dssp             SBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTT
T ss_pred             CcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCC
Confidence            999999986 45677888899999999 999876 788999999999999988764333   3578999999999986

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.92  E-value=3.9e-23  Score=140.60  Aligned_cols=141  Identities=16%  Similarity=0.217  Sum_probs=115.6

Q ss_pred             eeccccccEEEEEEeeC---CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEE
Q psy1859           8 RESSLKFQTRCIKCFPN---KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA   84 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~~---~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~   84 (162)
                      ....+...|.+++|+|+   +++|++++.||.|++|+++...  ......+..|..         .|.+++|+|++++|+
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~---------~v~~~~~~~~~~~l~  102 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG--QTIPKAQQMHTG---------PVLDVCWSDDGSKVF  102 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS--CEEEEEEEECSS---------CEEEEEECTTSSEEE
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC--ceeEEEeccccC---------CEEEEEECcCCCEEE
Confidence            34556788999999998   5999999999999998876532  333344444443         799999999999999


Q ss_pred             EecCCCeEEEEeCCCccceeeeeecccceeEE-E--cCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          85 TGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-F--HQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        85 ~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      +++.|+.|++||+++++.+. +..|...+.++ |  +|++.++++++.|+.|++||+++++.+..+..+. .+.++.+.+
T Consensus       103 s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~  180 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY  180 (368)
T ss_dssp             EEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET
T ss_pred             EEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC
Confidence            99999999999999887665 45688999999 9  8999999999999999999999998888887654 455555543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.7e-24  Score=162.88  Aligned_cols=142  Identities=12%  Similarity=0.068  Sum_probs=108.8

Q ss_pred             EEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEE
Q psy1859          16 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW   95 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~w   95 (162)
                      +..++|+|+++.|++|+.|++|++|++..........+...  .....+.+|...|.+++|+|++++|++|+.|+.|++|
T Consensus       438 v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~--l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lw  515 (902)
T 2oaj_A          438 KRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVN--LSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLF  515 (902)
T ss_dssp             CCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEE--HHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             CCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEee--chhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEE
Confidence            34567889999999999999999977654321000111110  0000012356689999999999999999999999999


Q ss_pred             eCCCcc---------------------------------------------ceeeeeecccceeEE-EcCCCCEEEEecC
Q psy1859          96 DGFNKK---------------------------------------------RLCQFHRYDTGITSL-FHQEYNTFATGGS  129 (162)
Q Consensus        96 d~~~~~---------------------------------------------~~~~~~~~~~~v~~~-~~~~~~~l~~~~~  129 (162)
                      |+.+++                                             ++..+..|.+.|+++ |+|+| +|++|+.
T Consensus       516 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~  594 (902)
T 2oaj_A          516 KYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYA  594 (902)
T ss_dssp             EEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEET
T ss_pred             EecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeC
Confidence            997652                                             255667799999999 99999 9999999


Q ss_pred             CCeEEEEeCCCceeee-----eec-cCCCceeEEEec
Q psy1859         130 DGYVNIWDGFNKKRLC-----QFH-RYDTGITSLCFS  160 (162)
Q Consensus       130 d~~i~iwd~~~~~~~~-----~~~-~~~~~v~~v~~~  160 (162)
                      |++|++||++++..+.     .+. +|.+.|++|+|+
T Consensus       595 D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs  631 (902)
T 2oaj_A          595 AGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFV  631 (902)
T ss_dssp             TSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEE
T ss_pred             CCcEEEEECCCCeEEEEeehhHhccccccceEEEEEE
Confidence            9999999998876653     333 788999999999

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.92  E-value=9.5e-24  Score=146.11  Aligned_cols=143  Identities=18%  Similarity=0.246  Sum_probs=118.0

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC-CCEEEEecCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE-YNTFATGGSD   89 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d   89 (162)
                      .+...+.+++|+|++++|++++.||.+++|+++...........+..|.         ..|.+++|+|+ +.+|++++.|
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~l~s~~~d  135 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHS---------SSVKTVKFNAKQDNVLASGGNN  135 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSS---------SCCCEEEECSSSTTBEEEECSS
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCc---------cceEEEEEcCCCCCEEEEEcCC
Confidence            3567799999999999999999999999987765221122344444443         47999999998 7999999999


Q ss_pred             CeEEEEeCCCcc------ceee---eeecccceeEE-EcCC-CCEEEEecCCCeEEEEeCCCceeeeeeccC------CC
Q psy1859          90 GYVNIWDGFNKK------RLCQ---FHRYDTGITSL-FHQE-YNTFATGGSDGYVNIWDGFNKKRLCQFHRY------DT  152 (162)
Q Consensus        90 ~~v~~wd~~~~~------~~~~---~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~  152 (162)
                      +.|++||+++++      ....   ...|...+.++ |+|+ +.++++++.|+.|++||+++++.+..+..+      ..
T Consensus       136 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  215 (416)
T 2pm9_A          136 GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQ  215 (416)
T ss_dssp             SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCC
T ss_pred             CeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCC
Confidence            999999999876      3322   35688899999 9998 789999999999999999999988888766      78


Q ss_pred             ceeEEEecCC
Q psy1859         153 GITSLCFSYD  162 (162)
Q Consensus       153 ~v~~v~~~pd  162 (162)
                      .|.+++|+|+
T Consensus       216 ~v~~~~~~~~  225 (416)
T 2pm9_A          216 QLSVVEWHPK  225 (416)
T ss_dssp             CEEEEEECSS
T ss_pred             ceEEEEECCC
Confidence            8999999986

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.7e-23  Score=146.84  Aligned_cols=140  Identities=13%  Similarity=0.000  Sum_probs=116.3

Q ss_pred             ccccEEEEEEeeCCCeE-EEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          12 LKFQTRCIKCFPNKQGY-VLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l-~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      +.+.+.+++|+|++++| ++++.||.|+||+++...  ......+..+.       |...|.+++|+|++++|++++.++
T Consensus       101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~-------~~~~v~~~~~sp~~~~l~~~~~~g  171 (450)
T 2vdu_B          101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS--KNVLKLRKRFC-------FSKRPNAISIAEDDTTVIIADKFG  171 (450)
T ss_dssp             CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS--SSCEEEEEEEE-------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC--Cceeeeeeccc-------CCCCceEEEEcCCCCEEEEEeCCC
Confidence            34468999999999996 888999999998876323  23333333332       233799999999999999999999


Q ss_pred             eEEEEeCCCcccee----eeeecccceeEE-EcCC---CCEEEEecCCCeEEEEeCCCceeeee-eccCCCceeEEEec
Q psy1859          91 YVNIWDGFNKKRLC----QFHRYDTGITSL-FHQE---YNTFATGGSDGYVNIWDGFNKKRLCQ-FHRYDTGITSLCFS  160 (162)
Q Consensus        91 ~v~~wd~~~~~~~~----~~~~~~~~v~~~-~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~v~~~  160 (162)
                      .+++|++.+++...    .+..|...+.++ |+|+   +++|++++.|+.|++||+++++.+.. +.+|...|.+++|+
T Consensus       172 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s  250 (450)
T 2vdu_B          172 DVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG  250 (450)
T ss_dssp             EEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC
T ss_pred             cEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC
Confidence            99999998876544    777899999999 9999   99999999999999999999888777 55899999999997

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.92  E-value=1.1e-23  Score=147.16  Aligned_cols=150  Identities=13%  Similarity=0.176  Sum_probs=112.0

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcc-------cceeeeeeeeeeec---cCcccceeceEEEEecCCC-
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPE-------MQKMKYAFKCHRIK---EDGIEKIYPVNAISFHQEY-   80 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~-------~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~p~~-   80 (162)
                      ..+.|.+++|+|++++|++|+.||.|+||+++....       .......+.+|...   .....+...|.+++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            457899999999999999999999999988764320       11123344444300   0000001479999999998 


Q ss_pred             -CEEEEecCCCeEEEEeCCCccce---------------------------------------ee-eeecccceeEE-Ec
Q psy1859          81 -NTFATGGSDGYVNIWDGFNKKRL---------------------------------------CQ-FHRYDTGITSL-FH  118 (162)
Q Consensus        81 -~~l~~~~~d~~v~~wd~~~~~~~---------------------------------------~~-~~~~~~~v~~~-~~  118 (162)
                       ..|++++.|+.|++||+..++..                                       .. ...|...|.++ |+
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             79999999999999999764331                                       11 24688899999 99


Q ss_pred             CCCCEEEEecCCCeEEEEeCCC-ceeee-------eeccCCCceeEEEecCC
Q psy1859         119 QEYNTFATGGSDGYVNIWDGFN-KKRLC-------QFHRYDTGITSLCFSYD  162 (162)
Q Consensus       119 ~~~~~l~~~~~d~~i~iwd~~~-~~~~~-------~~~~~~~~v~~v~~~pd  162 (162)
                      |++++|+++ .|+.|++||+++ ++.+.       .+..|...|++++|+|+
T Consensus       187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  237 (447)
T 3dw8_B          187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPN  237 (447)
T ss_dssp             TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSS
T ss_pred             CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCC
Confidence            999999999 799999999984 44444       35689999999999986

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.2e-23  Score=144.23  Aligned_cols=138  Identities=14%  Similarity=0.111  Sum_probs=120.3

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .....+.+++|+|++++|++++.|+.+++|+...    .+....+..|.         ..|.+++|+|++ .+++++.|+
T Consensus       245 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~---------~~i~~~~~~~~~-~l~~~~~d~  310 (425)
T 1r5m_A          245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN----GNSQNCFYGHS---------QSIVSASWVGDD-KVISCSMDG  310 (425)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS----BSCSEEECCCS---------SCEEEEEEETTT-EEEEEETTS
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC----CccceEecCCC---------ccEEEEEECCCC-EEEEEeCCC
Confidence            4567789999999999999999999999965543    33333444443         379999999999 999999999


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCce--------------------eeeeecc
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKK--------------------RLCQFHR  149 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~--------------------~~~~~~~  149 (162)
                      .|++||+++++.+..+..+...+.++ |+|+++++++++.|+.|++||+++++                    .+..+..
T Consensus       311 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (425)
T 1r5m_A          311 SVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQS  390 (425)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECC
T ss_pred             cEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcC
Confidence            99999999999999998889999999 99999999999999999999999887                    7888888


Q ss_pred             CCC--ceeEEEecCC
Q psy1859         150 YDT--GITSLCFSYD  162 (162)
Q Consensus       150 ~~~--~v~~v~~~pd  162 (162)
                      |..  .|++++|+||
T Consensus       391 ~~~~~~v~~~~~s~~  405 (425)
T 1r5m_A          391 SQDNDYIFDLSWNCA  405 (425)
T ss_dssp             TTCCCCEEEEEECTT
T ss_pred             cccCCceEEEEccCC
Confidence            876  9999999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.92  E-value=6.8e-24  Score=144.36  Aligned_cols=137  Identities=11%  Similarity=0.112  Sum_probs=114.6

Q ss_pred             ccccEEEEEEeeC----CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecC-CCCEEEEe
Q psy1859          12 LKFQTRCIKCFPN----KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ-EYNTFATG   86 (162)
Q Consensus        12 ~~~~~~~i~~~~~----~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~   86 (162)
                      ....+.+++|+|+    +++|++++.||.|++|+.+.    .+....+.+|.         ..|.+++|+| ++.+|+++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~----~~~~~~~~~~~---------~~i~~~~~~~~~~~~l~s~  134 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT----MQCIKHYVGHG---------NAINELKFHPRDPNLLLSV  134 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT----CCEEEEEESCC---------SCEEEEEECSSCTTEEEEE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh----ceEeeeecCCC---------CcEEEEEECCCCCCEEEEE
Confidence            3466899999998    67899999999999965543    33444445444         3799999999 88999999


Q ss_pred             cCCCeEEEEeCCCccceeee---eecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeecc-------------
Q psy1859          87 GSDGYVNIWDGFNKKRLCQF---HRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR-------------  149 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~~~~~~---~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------------  149 (162)
                      +.|+.|++||+++++.+..+   ..|...+.++ |+|+++++++++.|+.|++||+++++.+..+..             
T Consensus       135 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  214 (366)
T 3k26_A          135 SKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPF  214 (366)
T ss_dssp             ETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCC
T ss_pred             eCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccc
Confidence            99999999999998888877   6788999999 999999999999999999999998765544433             


Q ss_pred             ---------------CCCceeEEEecC
Q psy1859         150 ---------------YDTGITSLCFSY  161 (162)
Q Consensus       150 ---------------~~~~v~~v~~~p  161 (162)
                                     |...|.+++|++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~v~~~~~~~  241 (366)
T 3k26_A          215 ISQKIHFPDFSTRDIHRNYVDCVRWLG  241 (366)
T ss_dssp             CCEEECCCSEEECSSCSSCCCEEEEET
T ss_pred             cceeeccCccccccCCcceEEEEEEcC
Confidence                           888999999874

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.92  E-value=4.3e-23  Score=143.15  Aligned_cols=131  Identities=12%  Similarity=0.209  Sum_probs=110.1

Q ss_pred             EEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEe
Q psy1859          17 RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWD   96 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd   96 (162)
                      ....++|++++|++++.||.|++|+.+.    ......+..         |...|.+++|+|++++|++++.|+.|++||
T Consensus       101 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~---------h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd  167 (420)
T 3vl1_A          101 AVDTAKLQMRRFILGTTEGDIKVLDSNF----NLQREIDQA---------HVSEITKLKFFPSGEALISSSQDMQLKIWS  167 (420)
T ss_dssp             EEEEECSSSCEEEEEETTSCEEEECTTS----CEEEEETTS---------SSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEecCCCEEEEEECCCCEEEEeCCC----cceeeeccc---------ccCccEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            4456889999999999999999966543    233333333         444899999999999999999999999999


Q ss_pred             CCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeecc---CCCceeEEEec
Q psy1859          97 GFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR---YDTGITSLCFS  160 (162)
Q Consensus        97 ~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~v~~~  160 (162)
                      +++++.+..+..|...+.++ |+|++++|++++.|+.|++||+++++.+..+..   +...|.+++|.
T Consensus       168 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  235 (420)
T 3vl1_A          168 VKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALF  235 (420)
T ss_dssp             TTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEE
T ss_pred             CCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEe
Confidence            99999999999999999999 999999999999999999999999998888864   44566666664

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.2e-23  Score=155.90  Aligned_cols=143  Identities=13%  Similarity=0.103  Sum_probs=119.8

Q ss_pred             eeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC--CCEEEE
Q psy1859           8 RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE--YNTFAT   85 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~   85 (162)
                      ....+.+.|.+++|+|+++++++|+.||.|+||+.+..+  ......+.+|.         .+|.+++|+|+  +++|++
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~--~~~~~~l~~h~---------~~V~~l~~s~~~~~~~l~s   72 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--HKLIDTLTGHE---------GPVWRVDWAHPKFGTILAS   72 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE--EEEEEEECCCS---------SCEEEEEECCTTSCSEEEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC--CccceeccCCc---------CceEEEEecCCCCCCEEEE
Confidence            345677889999999999999999999999998876433  44455555554         37999999988  899999


Q ss_pred             ecCCCeEEEEeCCCcc--ceeeeeecccceeEE-EcCC--CCEEEEecCCCeEEEEeCCCce--eeeeeccCCCceeEEE
Q psy1859          86 GGSDGYVNIWDGFNKK--RLCQFHRYDTGITSL-FHQE--YNTFATGGSDGYVNIWDGFNKK--RLCQFHRYDTGITSLC  158 (162)
Q Consensus        86 ~~~d~~v~~wd~~~~~--~~~~~~~~~~~v~~~-~~~~--~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~v~  158 (162)
                      ++.||.|++||+.+++  .+..+..|...+.++ |+|+  +.++++++.||.|++||++++.  ....+..|...|.+++
T Consensus        73 ~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~  152 (753)
T 3jro_A           73 CSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS  152 (753)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEE
T ss_pred             EeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEE
Confidence            9999999999999876  667777899999999 9998  9999999999999999998773  3445678999999999


Q ss_pred             ecC
Q psy1859         159 FSY  161 (162)
Q Consensus       159 ~~p  161 (162)
                      |+|
T Consensus       153 ~~p  155 (753)
T 3jro_A          153 WAP  155 (753)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            998

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.92  E-value=5.4e-23  Score=143.51  Aligned_cols=150  Identities=17%  Similarity=0.181  Sum_probs=118.4

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccC---cccceeceEEEE--ecCCCCEEEE
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKED---GIEKIYPVNAIS--FHQEYNTFAT   85 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~--~~p~~~~l~~   85 (162)
                      .+...+.+++|+|++++|++++.||.|++|+++.... .+....+..+.....   ..++...+.++.  ++|++.++++
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQ-ESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA  187 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEE-TTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccC-CceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEE
Confidence            4677899999999999999999999999988753210 122222222211100   000334566776  5688999999


Q ss_pred             ecCCCeEEEEeCCCccceeeeee--cccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec-cCCCceeEEEecC
Q psy1859          86 GGSDGYVNIWDGFNKKRLCQFHR--YDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH-RYDTGITSLCFSY  161 (162)
Q Consensus        86 ~~~d~~v~~wd~~~~~~~~~~~~--~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~p  161 (162)
                      ++.|+.|++||+++++.+..+..  |...++++ |+|++++|++++.|+.|++||+++++++..+. .|...|.+++|+|
T Consensus       188 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  267 (437)
T 3gre_A          188 LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ  267 (437)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECT
T ss_pred             EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecc
Confidence            99999999999999999998887  88999999 99999999999999999999999999988876 7788999997776

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.92  E-value=1.2e-22  Score=139.93  Aligned_cols=153  Identities=13%  Similarity=0.136  Sum_probs=121.2

Q ss_pred             eeeccccccEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeee--eeccCcccceeceEEEEecC-CCCE
Q psy1859           7 RRESSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCH--RIKEDGIEKIYPVNAISFHQ-EYNT   82 (162)
Q Consensus         7 ~~~~~~~~~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~p-~~~~   82 (162)
                      .....+.+.+.+++|+| ++++|++++.||.|++|+.+...  ..........  ........|...|.+++|+| ++.+
T Consensus        37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  114 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSS--RQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM  114 (408)
T ss_dssp             EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCS--SSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred             eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCc--ccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence            34445778999999999 99999999999999998776543  2222211110  00111223666899999999 6689


Q ss_pred             EEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcC---CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEE
Q psy1859          83 FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ---EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLC  158 (162)
Q Consensus        83 l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~  158 (162)
                      |++++.|+.|++||+.+++....+. +...+..+ ++|   ++.++++++.|+.|++||+++++.+..+..|...|.+++
T Consensus       115 l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~  193 (408)
T 4a11_B          115 FTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS  193 (408)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE
T ss_pred             EEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE
Confidence            9999999999999999988777765 56777788 777   555999999999999999999999999999999999999


Q ss_pred             ecCC
Q psy1859         159 FSYD  162 (162)
Q Consensus       159 ~~pd  162 (162)
                      |+|+
T Consensus       194 ~~~~  197 (408)
T 4a11_B          194 WSPR  197 (408)
T ss_dssp             ECSS
T ss_pred             ECCC
Confidence            9986

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.91  E-value=9.5e-23  Score=136.14  Aligned_cols=136  Identities=13%  Similarity=0.118  Sum_probs=117.4

Q ss_pred             cccccEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          11 SLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        11 ~~~~~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      .....+.+++++| +++.+++++.||.+++|+  .    ......+...        |...+.+++|+|++. +++++.|
T Consensus       140 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~----~~~~~~~~~~--------~~~~i~~~~~~~~~~-~~~~~~d  204 (313)
T 3odt_A          140 AHNASVWDAKVVSFSENKFLTASADKTIKLWQ--N----DKVIKTFSGI--------HNDVVRHLAVVDDGH-FISCSND  204 (313)
T ss_dssp             CCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--T----TEEEEEECSS--------CSSCEEEEEEEETTE-EEEEETT
T ss_pred             cCCCceeEEEEccCCCCEEEEEECCCCEEEEe--c----CceEEEEecc--------CcccEEEEEEcCCCe-EEEccCC
Confidence            4567788999998 899999999999999965  2    2233333331        223799999999988 8999999


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +.|++||+++++.+..+..|...+.++ |+|++ .+++++.|+.|++||+++++.+..+..|...|.+++|+||
T Consensus       205 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  277 (313)
T 3odt_A          205 GLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSN  277 (313)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTT
T ss_pred             CeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccC
Confidence            999999999999999999999999999 99999 6889999999999999999999999999999999999986

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.91  E-value=1.8e-23  Score=144.67  Aligned_cols=139  Identities=18%  Similarity=0.196  Sum_probs=112.7

Q ss_pred             cEEEEEEeeCCCeEE-EEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecC-CCCEEEEecCCCeE
Q psy1859          15 QTRCIKCFPNKQGYV-LSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ-EYNTFATGGSDGYV   92 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~-~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~~v   92 (162)
                      ....++++|+...++ +++.+|.|+||+++...........+.+         |...|.+++|+| ++.+|++++.|+.|
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~---------h~~~V~~~~~~p~~~~~l~s~s~dg~v  106 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCG---------HTAPVLDIAWCPHNDNVIASGSEDCTV  106 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCC---------CSSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEec---------CCCCEEEEEeCCCCCCEEEEEeCCCeE
Confidence            334577888765444 4688999999877543211122223334         444899999999 88999999999999


Q ss_pred             EEEeCCCc-------cceeeeeecccceeEE-EcCCC-CEEEEecCCCeEEEEeCCCceeeeee--ccCCCceeEEEecC
Q psy1859          93 NIWDGFNK-------KRLCQFHRYDTGITSL-FHQEY-NTFATGGSDGYVNIWDGFNKKRLCQF--HRYDTGITSLCFSY  161 (162)
Q Consensus        93 ~~wd~~~~-------~~~~~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~v~~v~~~p  161 (162)
                      ++||+.++       +++..+..|...+.++ |+|++ .++++++.|+.|++||+++++.+..+  ..|...|.+++|+|
T Consensus       107 ~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~  186 (402)
T 2aq5_A          107 MVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR  186 (402)
T ss_dssp             EEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT
T ss_pred             EEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC
Confidence            99999987       5677888899999999 99998 69999999999999999999999888  78999999999998


Q ss_pred             C
Q psy1859         162 D  162 (162)
Q Consensus       162 d  162 (162)
                      |
T Consensus       187 ~  187 (402)
T 2aq5_A          187 D  187 (402)
T ss_dssp             T
T ss_pred             C
Confidence            6

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=2e-23  Score=146.12  Aligned_cols=144  Identities=13%  Similarity=0.023  Sum_probs=110.0

Q ss_pred             ccccEEEEEEeeCCCeEE----EEcCCCcEEEEEecCCcc---cc-eeeeeeeeeeeccCcccceeceEEEEecCC-CCE
Q psy1859          12 LKFQTRCIKCFPNKQGYV----LSSIEGRAAVEYLDTGPE---MQ-KMKYAFKCHRIKEDGIEKIYPVNAISFHQE-YNT   82 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~----~~~~~g~i~i~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~   82 (162)
                      +...+.+++|+|++++|+    +++.|+.|+||+.+....   .. +....+..      ..+|...|.+++|+|+ +.+
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~------~~~h~~~V~~v~~~p~~~~~  164 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKL------LKDAGGMVIDMKWNPTVPSM  164 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEEC------CCSGGGSEEEEEECSSCTTE
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeec------cCCCCCceEEEEECCCCCCE
Confidence            445689999999999999    788899999987653200   00 11111111      1125558999999998 689


Q ss_pred             EEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccC-------CCce
Q psy1859          83 FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY-------DTGI  154 (162)
Q Consensus        83 l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~v  154 (162)
                      |++++.|+.|++||++++..+.....|...+.++ |+|+|++|++|+.|+.|++||++ ++....+..|       ...|
T Consensus       165 las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v  243 (434)
T 2oit_A          165 VAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRV  243 (434)
T ss_dssp             EEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEE
T ss_pred             EEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeE
Confidence            9999999999999999886666666788899999 99999999999999999999998 5544444333       3378


Q ss_pred             eEEEecCC
Q psy1859         155 TSLCFSYD  162 (162)
Q Consensus       155 ~~v~~~pd  162 (162)
                      .+++|+++
T Consensus       244 ~~v~w~~~  251 (434)
T 2oit_A          244 LDVLWIGT  251 (434)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEecC
Confidence            99999874

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.3e-23  Score=144.18  Aligned_cols=145  Identities=17%  Similarity=0.179  Sum_probs=120.6

Q ss_pred             cccccEEEEEEeeC-CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecC
Q psy1859          11 SLKFQTRCIKCFPN-KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGS   88 (162)
Q Consensus        11 ~~~~~~~~i~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~   88 (162)
                      .....+.+++|+|+ +.++++++.||.|++|+....    +....+..+..   ..+|...+.+++|+|++ .++++++.
T Consensus       163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~  235 (416)
T 2pm9_A          163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK----KEVIHLSYTSP---NSGIKQQLSVVEWHPKNSTRVATATG  235 (416)
T ss_dssp             CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT----EEEEEECCCCC---SSCCCCCEEEEEECSSCTTEEEEEEC
T ss_pred             CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC----CcceEEecccc---ccccCCceEEEEECCCCCCEEEEEEC
Confidence            35667899999998 789999999999999666542    33333333311   11124479999999997 78999999


Q ss_pred             CC---eEEEEeCCCc-cceeeee-ecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          89 DG---YVNIWDGFNK-KRLCQFH-RYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        89 d~---~v~~wd~~~~-~~~~~~~-~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      |+   .|++||++++ .++..+. .|...+.++ |+| ++++|++++.|+.|++||+++++.+..+..|...|.+++|+|
T Consensus       236 d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~  315 (416)
T 2pm9_A          236 SDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP  315 (416)
T ss_dssp             CSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECT
T ss_pred             CCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECC
Confidence            98   9999999986 5677777 899999999 999 999999999999999999999999999999999999999998


Q ss_pred             C
Q psy1859         162 D  162 (162)
Q Consensus       162 d  162 (162)
                      |
T Consensus       316 ~  316 (416)
T 2pm9_A          316 E  316 (416)
T ss_dssp             T
T ss_pred             C
Confidence            6

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2e-22  Score=139.46  Aligned_cols=148  Identities=16%  Similarity=0.164  Sum_probs=123.0

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeec----------------------------
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIK----------------------------   61 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~----------------------------   61 (162)
                      ..+...+.+++|+|++++|++++.|+.+++|++....  .  ...+..+...                            
T Consensus       146 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (425)
T 1r5m_A          146 NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT--V--MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFV  221 (425)
T ss_dssp             CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE--E--EEEECCC---------------CCCBSCCEEEETTEEE
T ss_pred             cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc--E--EEEeeccccCccceeeccccCCcceeeEEEEcCCCEEE
Confidence            3456788999999999999999999999997765432  1  1111111100                            


Q ss_pred             -------------------cCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCC
Q psy1859          62 -------------------EDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEY  121 (162)
Q Consensus        62 -------------------~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~  121 (162)
                                         .....|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...+.++ |+|++
T Consensus       222 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  301 (425)
T 1r5m_A          222 IPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD  301 (425)
T ss_dssp             EECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT
T ss_pred             EEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC
Confidence                               0112467789999999999999999999999999999999888888899999999 99999


Q ss_pred             CEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         122 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       122 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                       ++++++.|+.|++||+++++.+..+..|...|.+++|+||
T Consensus       302 -~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~  341 (425)
T 1r5m_A          302 -KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQD  341 (425)
T ss_dssp             -EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTT
T ss_pred             -EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCC
Confidence             9999999999999999999999999999999999999986

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.91  E-value=7.1e-23  Score=142.93  Aligned_cols=143  Identities=13%  Similarity=0.107  Sum_probs=111.0

Q ss_pred             ccccccEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcccc--eeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe
Q psy1859          10 SSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQ--KMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG   86 (162)
Q Consensus        10 ~~~~~~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~   86 (162)
                      ..+.+.|.+++|+| ++++|++|+.||.|+||+.+......  .....+ .         |...|.+++|+|++.+|+++
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~---------h~~~v~~~~~~~~~~~l~s~  129 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-D---------CSSTVTQITMIPNFDAFAVS  129 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-E---------CSSCEEEEEECTTSSEEEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-c---------CCCCEEEEEEeCCCCEEEEE
Confidence            44567899999999 99999999999999998775411001  111111 1         44489999999999999999


Q ss_pred             cCCCeEEEEeCC---Cccceeeeee------------cccceeEE---EcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859          87 GSDGYVNIWDGF---NKKRLCQFHR------------YDTGITSL---FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        87 ~~d~~v~~wd~~---~~~~~~~~~~------------~~~~v~~~---~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      +.|+.|++||+.   .++....+..            +...+.++   +++++.++++++.|+.|++||+++++.+..+.
T Consensus       130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  209 (437)
T 3gre_A          130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE  209 (437)
T ss_dssp             ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence            999999999995   4444333221            23345555   55789999999999999999999999999888


Q ss_pred             c--CCCceeEEEecCC
Q psy1859         149 R--YDTGITSLCFSYD  162 (162)
Q Consensus       149 ~--~~~~v~~v~~~pd  162 (162)
                      .  |...|++++|+|+
T Consensus       210 ~~~h~~~v~~~~~s~~  225 (437)
T 3gre_A          210 NSPRHGAVSSICIDEE  225 (437)
T ss_dssp             CCGGGCCEEEEEECTT
T ss_pred             cCCCCCceEEEEECCC
Confidence            7  8899999999986

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.91  E-value=7.1e-23  Score=141.06  Aligned_cols=145  Identities=15%  Similarity=0.161  Sum_probs=116.9

Q ss_pred             cccEEEEEEe----eCCCe-EEEEcCCCcEEEEEecC------Cccccee---eeeeeeeeeccCcccceeceEEEEecC
Q psy1859          13 KFQTRCIKCF----PNKQG-YVLSSIEGRAAVEYLDT------GPEMQKM---KYAFKCHRIKEDGIEKIYPVNAISFHQ   78 (162)
Q Consensus        13 ~~~~~~i~~~----~~~~~-l~~~~~~g~i~i~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p   78 (162)
                      ...+.+++|+    |++++ |++++.||.+++|+...      ..  ...   ...+.+.  ......|...|.+++|+|
T Consensus       121 ~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~  196 (397)
T 1sq9_A          121 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL--TLNWSPTLELQGT--VESPMTPSQFATSVDISE  196 (397)
T ss_dssp             GSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT--TTCCCCEEEEEEE--ECCSSSSCCCCCEEEECT
T ss_pred             CCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc--eeeccCcceeeee--eccccCCCCCceEEEECC
Confidence            4779999999    99999 99999999999988775      22  111   0022210  000012445799999999


Q ss_pred             CCCEEEEecCCCeEEEEeCCCccceeeeee---c---ccceeEE-EcCCCCEEEEecCC---CeEEEEeCCCceeeeeec
Q psy1859          79 EYNTFATGGSDGYVNIWDGFNKKRLCQFHR---Y---DTGITSL-FHQEYNTFATGGSD---GYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        79 ~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~---~---~~~v~~~-~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~  148 (162)
                      ++ ++++++.|+.|++||+++++.+..+..   |   ...+.++ |+|++++|++++.|   +.|++||+++++.+..+.
T Consensus       197 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~  275 (397)
T 1sq9_A          197 RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS  275 (397)
T ss_dssp             TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred             Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceec
Confidence            99 999999999999999999999988888   8   8999999 99999999999999   999999999999999998


Q ss_pred             c-------------CCCceeEEEecCC
Q psy1859         149 R-------------YDTGITSLCFSYD  162 (162)
Q Consensus       149 ~-------------~~~~v~~v~~~pd  162 (162)
                      .             |...|.+++|+||
T Consensus       276 ~~~~~~~~~~~~~~~~~~v~~~~~~~~  302 (397)
T 1sq9_A          276 VPTHSSQASLGEFAHSSWVMSLSFNDS  302 (397)
T ss_dssp             BC--------CCBSBSSCEEEEEECSS
T ss_pred             cCcccccccccccccCCcEEEEEECCC
Confidence            8             9999999999986

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.91  E-value=3e-23  Score=147.24  Aligned_cols=135  Identities=12%  Similarity=0.053  Sum_probs=106.7

Q ss_pred             cccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeE
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV   92 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v   92 (162)
                      ...|.+++|+|+|..+++++.||.++||+  ...    ....+. |....    ....+.+++|||+|++|++|+.||.|
T Consensus        85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd--~~~----~l~~l~-~~~~~----~~~sv~svafSPDG~~LAsgs~DGtV  153 (588)
T 2j04_A           85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFK--DNK----MLTNLD-SKGNL----SSRTYHCFEWNPIESSIVVGNEDGEL  153 (588)
T ss_dssp             SCCEEEEEECSSSSCEEEEETTSCEEEEE--TTE----EEEECC-CSSCS----TTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEe--CCc----eeeecc-CCCcc----ccccEEEEEEcCCCCEEEEEcCCCEE
Confidence            67899999999999999999999999965  221    222233 32100    01149999999999999999999999


Q ss_pred             EEEeCCCccc-------eeee----eecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCcee---eeee-ccCCCceeE
Q psy1859          93 NIWDGFNKKR-------LCQF----HRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKR---LCQF-HRYDTGITS  156 (162)
Q Consensus        93 ~~wd~~~~~~-------~~~~----~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~-~~~~~~v~~  156 (162)
                      ++||+..++.       +..+    .+|...|.++ |+|+|  +++++.|+++++||+.+++.   .+++ .+|...|.+
T Consensus       154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s  231 (588)
T 2j04_A          154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD  231 (588)
T ss_dssp             EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred             EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence            9999998753       4555    4566799999 99999  88888999999999987763   3456 478889999


Q ss_pred             EEec
Q psy1859         157 LCFS  160 (162)
Q Consensus       157 v~~~  160 (162)
                      ++|+
T Consensus       232 vaFs  235 (588)
T 2j04_A          232 LKIV  235 (588)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9997

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.9e-23  Score=149.09  Aligned_cols=141  Identities=13%  Similarity=0.058  Sum_probs=110.5

Q ss_pred             ccccEEEEEEeeC------CCeEEEEcCCCcEEEEEecCCcccc-------eeeeeeeeeeeccCcccceeceEEEEecC
Q psy1859          12 LKFQTRCIKCFPN------KQGYVLSSIEGRAAVEYLDTGPEMQ-------KMKYAFKCHRIKEDGIEKIYPVNAISFHQ   78 (162)
Q Consensus        12 ~~~~~~~i~~~~~------~~~l~~~~~~g~i~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~p   78 (162)
                      ..+.+.+++|+|+      +.+|++++.||+|+||+.+......       .....+.+         |...|.+++|+|
T Consensus       206 ~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~---------h~~~v~sv~~s~  276 (524)
T 2j04_B          206 SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL---------ADSLITTFDFLS  276 (524)
T ss_dssp             CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC---------TTTCEEEEEESS
T ss_pred             cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEc---------CCCCEEEEEecC
Confidence            3467899999996      5789999999999998775432100       01112233         445899999998


Q ss_pred             CCCEEEEecCCCeEEEEeCCCcc-ceeeeeecccceeEE---EcCCC-CEEEEecCCCeEEEEeCCCceeeeeeccCCC-
Q psy1859          79 EYNTFATGGSDGYVNIWDGFNKK-RLCQFHRYDTGITSL---FHQEY-NTFATGGSDGYVNIWDGFNKKRLCQFHRYDT-  152 (162)
Q Consensus        79 ~~~~l~~~~~d~~v~~wd~~~~~-~~~~~~~~~~~v~~~---~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-  152 (162)
                      + ..|++|+.||.|++||++++. +...+..|...|.++   |+|++ .+|++++.|++|+|||+++++++..+.+|.. 
T Consensus       277 ~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~  355 (524)
T 2j04_B          277 P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG  355 (524)
T ss_dssp             S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC
T ss_pred             C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc
Confidence            6 489999999999999999764 455678899999987   57787 8999999999999999999887777766653 


Q ss_pred             -ceeEEEecCC
Q psy1859         153 -GITSLCFSYD  162 (162)
Q Consensus       153 -~v~~v~~~pd  162 (162)
                       .|.+++|+||
T Consensus       356 ~~v~~v~fsp~  366 (524)
T 2j04_B          356 SNLVPVVYCPQ  366 (524)
T ss_dssp             CSCCCEEEETT
T ss_pred             CcccceEeCCC
Confidence             5889999995

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.91  E-value=6.5e-23  Score=148.02  Aligned_cols=137  Identities=14%  Similarity=0.068  Sum_probs=117.4

Q ss_pred             ccccEEEEEEeeCCCeEEEEcC-CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      +...+.+++++  ++++++++. ++.+++|++....  ... ..+..         |...|.+++|+|++++|++++.|+
T Consensus       445 ~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~--~~~-~~~~~---------~~~~v~~~~~s~~g~~l~~~~~dg  510 (615)
T 1pgu_A          445 LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLE--VSF-DLKTP---------LRAKPSYISISPSETYIAAGDVMG  510 (615)
T ss_dssp             CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEE--EEE-ECSSC---------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcc--ccc-cccCC---------ccCceEEEEECCCCCEEEEcCCCC
Confidence            45677888888  889999999 9999996654321  111 23333         344799999999999999999999


Q ss_pred             eEEEEeCCCccceeeeee-cccceeEE-EcC----------CCCEEEEecCCCeEEEEeCCCc-eeeeeeccCCCceeEE
Q psy1859          91 YVNIWDGFNKKRLCQFHR-YDTGITSL-FHQ----------EYNTFATGGSDGYVNIWDGFNK-KRLCQFHRYDTGITSL  157 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~-~~~~v~~~-~~~----------~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~v  157 (162)
                      .|++||+.+++.+..+.. |...++++ |+|          ++++|++++.|+.|++||+.++ +.+..+.+|...|+++
T Consensus       511 ~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l  590 (615)
T 1pgu_A          511 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNL  590 (615)
T ss_dssp             CEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEE
T ss_pred             eEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEE
Confidence            999999999999888887 99999999 999          9999999999999999999987 7888889999999999


Q ss_pred             EecCC
Q psy1859         158 CFSYD  162 (162)
Q Consensus       158 ~~~pd  162 (162)
                      +|+||
T Consensus       591 ~~s~~  595 (615)
T 1pgu_A          591 LWETP  595 (615)
T ss_dssp             EEEET
T ss_pred             EEcCC
Confidence            99986

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.91  E-value=2.9e-23  Score=140.39  Aligned_cols=141  Identities=16%  Similarity=0.082  Sum_probs=117.0

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCC-EEEEec
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN-TFATGG   87 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~   87 (162)
                      ...+...+.+++|+|++++|++++.|+.|++|+++..... .....+..         |...|.+++|+|+++ +|++++
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~-~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~   76 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN-VDLLQSLR---------YKHPLLCCNFIDNTDLQIYVGT   76 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE-EEEEEEEE---------CSSCEEEEEEEESSSEEEEEEE
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc-ccceeeee---------cCCceEEEEECCCCCcEEEEEc
Confidence            4467788999999999999999999999999887754311 11222223         334799999999999 999999


Q ss_pred             CCCeEEEEeC-CCccceeeeee--cccceeEE-EcCCCCEEEEecCCCeEEEEeCCC---------ceeeeeeccCCCce
Q psy1859          88 SDGYVNIWDG-FNKKRLCQFHR--YDTGITSL-FHQEYNTFATGGSDGYVNIWDGFN---------KKRLCQFHRYDTGI  154 (162)
Q Consensus        88 ~d~~v~~wd~-~~~~~~~~~~~--~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~~~~~~~v  154 (162)
                      .|+.|++||+ ..++. ..+..  |...+.++ |+| +.++++++.|+.|++||+++         ++++..+. |...|
T Consensus        77 ~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v  153 (342)
T 1yfq_A           77 VQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKI  153 (342)
T ss_dssp             TTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCE
T ss_pred             CCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCce
Confidence            9999999999 76644 66677  89999999 999 99999999999999999987         77777766 88899


Q ss_pred             eEEEecCC
Q psy1859         155 TSLCFSYD  162 (162)
Q Consensus       155 ~~v~~~pd  162 (162)
                      .+++|+|+
T Consensus       154 ~~~~~~~~  161 (342)
T 1yfq_A          154 FTMDTNSS  161 (342)
T ss_dssp             EEEEECSS
T ss_pred             EEEEecCC
Confidence            99999985

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.91  E-value=8.7e-24  Score=149.95  Aligned_cols=147  Identities=7%  Similarity=0.013  Sum_probs=108.1

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCc---ccceeeeee-------------e-eeeeccCcccceeceEE
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGP---EMQKMKYAF-------------K-CHRIKEDGIEKIYPVNA   73 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~---~~~~~~~~~-------------~-~~~~~~~~~~~~~~v~~   73 (162)
                      .+..-+.+++|+|||+++++++.|++|+  +-....   +....++..             . +.........|...|.+
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~   90 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRV   90 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEE
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEE
Confidence            3556788999999999999999999996  221110   000001110             0 00000011234668999


Q ss_pred             EEecCCCCEEEEecCCCeEEEEeCCCccceeeeeeccc-----ceeEE-EcCCCCEEEEecCCCeEEEEeCCCce-----
Q psy1859          74 ISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT-----GITSL-FHQEYNTFATGGSDGYVNIWDGFNKK-----  142 (162)
Q Consensus        74 ~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~-----~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~-----  142 (162)
                      ++|||+|.+|++++.||.|++||...  .+..+. |..     .+.++ |||||++|++|+.||+|++||+.+++     
T Consensus        91 vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~  167 (588)
T 2j04_A           91 CKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPE  167 (588)
T ss_dssp             EEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCC
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccc
Confidence            99999999999999999999999644  555555 554     48999 99999999999999999999998875     


Q ss_pred             --eeeee----ccCCCceeEEEecCC
Q psy1859         143 --RLCQF----HRYDTGITSLCFSYD  162 (162)
Q Consensus       143 --~~~~~----~~~~~~v~~v~~~pd  162 (162)
                        .+.++    .+|.+.|.+++|+||
T Consensus       168 ~i~l~ti~~~~~gh~~~V~sVawSPd  193 (588)
T 2j04_A          168 FYFESSIRLSDAGSKDWVTHIVWYED  193 (588)
T ss_dssp             CEEEEEEECSCTTCCCCEEEEEEETT
T ss_pred             ceeeeeeecccccccccEEEEEEcCC
Confidence              25665    677889999999997

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.91  E-value=4.7e-22  Score=134.23  Aligned_cols=144  Identities=15%  Similarity=0.169  Sum_probs=117.0

Q ss_pred             ccccccEEEEEEeeC-CCeEEEEcCCCcEEEEEecCCccc-ceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859          10 SSLKFQTRCIKCFPN-KQGYVLSSIEGRAAVEYLDTGPEM-QKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      ..+.+.|.+|+|+|+ +++|++|+.|++|+||+++..... ......+.+|         ...|.+++|+|++++|++++
T Consensus        35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h---------~~~V~~~~~s~dg~~l~s~~  105 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH---------SHFVSDVVISSDGQFALSGS  105 (340)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCC---------SSCEEEEEECTTSSEEEEEE
T ss_pred             CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCC---------CCCEEEEEECCCCCEEEEEc
Confidence            346677899999997 689999999999999887654311 1223334444         44899999999999999999


Q ss_pred             CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCcee-eeeeccCCCceeEEEecCC
Q psy1859          88 SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKR-LCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~v~~~pd  162 (162)
                      .|+.|++|+............+...+... +++++.++++++.|+.+++||+..... ......|...+..++|+++
T Consensus       106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~  182 (340)
T 4aow_A          106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN  182 (340)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred             ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence            99999999999888777777777788888 999999999999999999999976554 4445678889999999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.91  E-value=5.8e-23  Score=143.42  Aligned_cols=147  Identities=20%  Similarity=0.290  Sum_probs=111.4

Q ss_pred             ccEEEEEEeeCC--CeEEEEcCCCcEEEEEecCCcccceeeeeeee----------------------------eeeccC
Q psy1859          14 FQTRCIKCFPNK--QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC----------------------------HRIKED   63 (162)
Q Consensus        14 ~~~~~i~~~~~~--~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~----------------------------~~~~~~   63 (162)
                      ..|.+++|+|++  ..|++++.|+.|++|+++...... ..+.+..                            ......
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRP-EGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF  172 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEE-ECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCc-ceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence            558999999998  789999999999998876422100 0000000                            000001


Q ss_pred             cccceeceEEEEecCCCCEEEEecCCCeEEEEeCCC-cccee-------eeeecccceeEE-EcCCC-CEEEEecCCCeE
Q psy1859          64 GIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN-KKRLC-------QFHRYDTGITSL-FHQEY-NTFATGGSDGYV  133 (162)
Q Consensus        64 ~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~-~~~~~-------~~~~~~~~v~~~-~~~~~-~~l~~~~~d~~i  133 (162)
                      ..+|...|.+++|+|++++|+++ .|+.|++||++. ++.+.       .+..|...+.++ |+|++ .++++++.|+.|
T Consensus       173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI  251 (447)
T ss_dssp             CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence            23477789999999999999998 799999999995 44443       355788899999 99998 999999999999


Q ss_pred             EEEeCCCcee----eeeeccCCC------------ceeEEEecCC
Q psy1859         134 NIWDGFNKKR----LCQFHRYDT------------GITSLCFSYD  162 (162)
Q Consensus       134 ~iwd~~~~~~----~~~~~~~~~------------~v~~v~~~pd  162 (162)
                      ++||+++++.    +..+..|..            .|.+++|+||
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  296 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS  296 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTT
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCC
Confidence            9999998886    677777775            8999999986

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.91  E-value=5.7e-22  Score=134.91  Aligned_cols=135  Identities=9%  Similarity=0.106  Sum_probs=117.9

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEE
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI   94 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~   94 (162)
                      .+.+++|+|+++++++++.+|.|++|+....   ......+..|.         ..|.+++|+|++.+|++++.|+.|++
T Consensus       177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d~~i~v  244 (369)
T 3zwl_B          177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNN---YEYVDSIDLHE---------KSISDMQFSPDLTYFITSSRDTNSFL  244 (369)
T ss_dssp             CEEEEEECGGGCEEEEEETTSEEEEEETTTT---TEEEEEEECCS---------SCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ceeEEEEcCCCCEEEEEcCCCEEEEEECCCC---cEeEEEEecCC---------CceeEEEECCCCCEEEEecCCceEEE
Confidence            7899999999999999999999999766542   23333444443         37999999999999999999999999


Q ss_pred             EeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCC--------------eEEEEeCCCceeeeeeccCCCceeEEEe
Q psy1859          95 WDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDG--------------YVNIWDGFNKKRLCQFHRYDTGITSLCF  159 (162)
Q Consensus        95 wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~--------------~i~iwd~~~~~~~~~~~~~~~~v~~v~~  159 (162)
                      ||+++++.+..+. +...+..+ |+|+++++++++.++              .+++||+.+++.+..+..|...|++++|
T Consensus       245 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  323 (369)
T 3zwl_B          245 VDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAI  323 (369)
T ss_dssp             EETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             EECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEE
Confidence            9999988888776 67788899 999999999999888              8999999999999999999999999999


Q ss_pred             cCC
Q psy1859         160 SYD  162 (162)
Q Consensus       160 ~pd  162 (162)
                      +||
T Consensus       324 s~~  326 (369)
T 3zwl_B          324 SPQ  326 (369)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            986

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.91  E-value=7.4e-23  Score=142.95  Aligned_cols=144  Identities=14%  Similarity=0.170  Sum_probs=116.3

Q ss_pred             ccccccEEEEEEeeC-CCeEEEEcCCCcEEEEEecCCc------ccceeeeeeeeeeeccCcccceeceEEEEecCCCC-
Q psy1859          10 SSLKFQTRCIKCFPN-KQGYVLSSIEGRAAVEYLDTGP------EMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN-   81 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~-~~~l~~~~~~g~i~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-   81 (162)
                      ..+.+.+.+++|+|+ +.++++++.+|.|++|++....      ........+.+|.         ..|.+++|+|++. 
T Consensus       125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~l~~~~~~~~  195 (430)
T 2xyi_A          125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ---------KEGYGLSWNPNLNG  195 (430)
T ss_dssp             EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS---------SCCCCEEECTTSTT
T ss_pred             EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCC---------CCeEEEEeCCCCCC
Confidence            445677899999997 6789999999999998876521      0123334444443         4799999999987 


Q ss_pred             EEEEecCCCeEEEEeCCCccc-------eeeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCc---eeeeeecc
Q psy1859          82 TFATGGSDGYVNIWDGFNKKR-------LCQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNK---KRLCQFHR  149 (162)
Q Consensus        82 ~l~~~~~d~~v~~wd~~~~~~-------~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~  149 (162)
                      +|++++.||.|++||+..+..       ...+..|...+.++ |+| ++.++++++.|+.|++||++++   +.+..+..
T Consensus       196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  275 (430)
T 2xyi_A          196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA  275 (430)
T ss_dssp             EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred             eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence            999999999999999987322       34556788899999 999 7789999999999999999987   56777778


Q ss_pred             CCCceeEEEecCC
Q psy1859         150 YDTGITSLCFSYD  162 (162)
Q Consensus       150 ~~~~v~~v~~~pd  162 (162)
                      |...|++++|+|+
T Consensus       276 ~~~~v~~i~~~p~  288 (430)
T 2xyi_A          276 HTAEVNCLSFNPY  288 (430)
T ss_dssp             CSSCEEEEEECSS
T ss_pred             CCCCeEEEEeCCC
Confidence            9999999999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.8e-22  Score=149.55  Aligned_cols=142  Identities=15%  Similarity=0.158  Sum_probs=118.8

Q ss_pred             ccccccEEEEEEeeC--CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC--CCEEEE
Q psy1859          10 SSLKFQTRCIKCFPN--KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE--YNTFAT   85 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~--~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~   85 (162)
                      ..+.+.|.+++|+|+  ++++++|+.||.|++|+.+...  ......+..|.         ..|.+++|+|+  +..+++
T Consensus        50 ~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~--~~~~~~~~~h~---------~~V~~v~~sp~~~~~~l~s  118 (753)
T 3jro_A           50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR--WSQIAVHAVHS---------ASVNSVQWAPHEYGPLLLV  118 (753)
T ss_dssp             CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE--EEEEEEECCCS---------SCEEEEEECCGGGCSEEEE
T ss_pred             cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc--ccccccccCCC---------CCeEEEEECCCCCCCEEEE
Confidence            345678999999988  9999999999999998776533  33444444443         47999999999  999999


Q ss_pred             ecCCCeEEEEeCCCcc--ceeeeeecccceeEE-EcC-------------CCCEEEEecCCCeEEEEeCCCc----eeee
Q psy1859          86 GGSDGYVNIWDGFNKK--RLCQFHRYDTGITSL-FHQ-------------EYNTFATGGSDGYVNIWDGFNK----KRLC  145 (162)
Q Consensus        86 ~~~d~~v~~wd~~~~~--~~~~~~~~~~~v~~~-~~~-------------~~~~l~~~~~d~~i~iwd~~~~----~~~~  145 (162)
                      ++.||.|++||++.+.  ....+..|...+.++ |+|             ++.++++++.||.|++||++++    ....
T Consensus       119 gs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~  198 (753)
T 3jro_A          119 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES  198 (753)
T ss_dssp             EETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEE
T ss_pred             EeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeee
Confidence            9999999999999873  344566788899999 999             5899999999999999999876    5667


Q ss_pred             eeccCCCceeEEEecCC
Q psy1859         146 QFHRYDTGITSLCFSYD  162 (162)
Q Consensus       146 ~~~~~~~~v~~v~~~pd  162 (162)
                      .+..|...|++++|+|+
T Consensus       199 ~~~~h~~~V~~l~~sp~  215 (753)
T 3jro_A          199 TLEGHSDWVRDVAWSPT  215 (753)
T ss_dssp             EECCCSSCEEEEEECCC
T ss_pred             eecCCCCcEEEEEeccC
Confidence            77899999999999986

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.90  E-value=8.4e-23  Score=137.22  Aligned_cols=137  Identities=7%  Similarity=-0.050  Sum_probs=97.8

Q ss_pred             cEEEEEEee---CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEE--------
Q psy1859          15 QTRCIKCFP---NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF--------   83 (162)
Q Consensus        15 ~~~~i~~~~---~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l--------   83 (162)
                      .++.++|++   ++..|++++.|++|+||+..  +  .+.+.++.++..      +...+.+++|+|++.++        
T Consensus       180 ~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~--T--Gk~l~tL~g~~~------~v~~v~~vafSpdG~~lvs~s~~~~  249 (356)
T 2w18_A          180 EETILTFAEVQGMQEALLGTTIMNNIVIWNLK--T--GQLLKKMHIDDS------YQASVCHKAYSEMGLLFIVLSHPCA  249 (356)
T ss_dssp             SSCEEEEEEEETSTTEEEEEETTSEEEEEETT--T--CCEEEEEECCC---------CCCEEEEEEETTEEEEEEC----
T ss_pred             ceeeEEeeccCCCCceEEEecCCCcEEEEECC--C--CcEEEEEcCCCc------ceeeeEEEEECCCCCEEEEeccCCC
Confidence            345567777   56889999999999996554  3  445555554332      22368888999999876        


Q ss_pred             ----EEecCCCeEEEEeCCCccceeeee-----ecccceeEEEcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCce
Q psy1859          84 ----ATGGSDGYVNIWDGFNKKRLCQFH-----RYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGI  154 (162)
Q Consensus        84 ----~~~~~d~~v~~wd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v  154 (162)
                          ++|+.|+++++||..+++.+..+.     +|...+.+. +.++.++++++.|++|+|||+.+++++.++.+|...+
T Consensus       250 ~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg-~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~v  328 (356)
T 2w18_A          250 KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG-DVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQH  328 (356)
T ss_dssp             --------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE-EEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CC
T ss_pred             cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc-ccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCe
Confidence                567889999999999988766542     333333333 3347889999999999999999999999999898766


Q ss_pred             e-EEEecCC
Q psy1859         155 T-SLCFSYD  162 (162)
Q Consensus       155 ~-~v~~~pd  162 (162)
                      . +++|+||
T Consensus       329 vs~vafSPD  337 (356)
T 2w18_A          329 WSFVKWSGT  337 (356)
T ss_dssp             CCEEEECSS
T ss_pred             EEEEEECCC
Confidence            5 5899997

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.9e-22  Score=141.53  Aligned_cols=142  Identities=12%  Similarity=0.104  Sum_probs=114.8

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC---CCEEEEec
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE---YNTFATGG   87 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~~~~   87 (162)
                      .+...+.+++|+|++++|++++.+|.+.+|+.............+.+|.         ..|.+++|+|+   +++|++++
T Consensus       147 ~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~sp~~~~~~~l~s~~  217 (450)
T 2vdu_B          147 CFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHV---------SMLTDVHLIKDSDGHQFIITSD  217 (450)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECS---------SCEEEEEEEECTTSCEEEEEEE
T ss_pred             cCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeeccc---------CceEEEEEcCCCCCCcEEEEEc
Confidence            3456789999999999999999999999966543221110222334443         47999999999   89999999


Q ss_pred             CCCeEEEEeCCCccceee-eeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeecc----------------
Q psy1859          88 SDGYVNIWDGFNKKRLCQ-FHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR----------------  149 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~-~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------------  149 (162)
                      .|+.|++||+++++.+.. +.+|...+.++ |+ ++++|++++.|+.|++||+++++++..+..                
T Consensus       218 ~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (450)
T 2vdu_B          218 RDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPP  296 (450)
T ss_dssp             TTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC--
T ss_pred             CCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccc
Confidence            999999999999888776 55789999999 99 999999999999999999999988777752                


Q ss_pred             ---------CCCceeEEEecCC
Q psy1859         150 ---------YDTGITSLCFSYD  162 (162)
Q Consensus       150 ---------~~~~v~~v~~~pd  162 (162)
                               ....|.+++|+||
T Consensus       297 ~~~~~~~~~~~~~v~~i~~~~~  318 (450)
T 2vdu_B          297 RFQNENNDIIEFAVSKIIKSKN  318 (450)
T ss_dssp             --------CBCCCEEEEEECSS
T ss_pred             cccccccccceEEEEEEEEeCC
Confidence                     2346888999885

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.1e-23  Score=141.72  Aligned_cols=96  Identities=13%  Similarity=0.151  Sum_probs=84.4

Q ss_pred             ceeceEEEEecC--CCCEEEEecCCCeEEEEeCCCccceeeee-ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCce
Q psy1859          67 KIYPVNAISFHQ--EYNTFATGGSDGYVNIWDGFNKKRLCQFH-RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKK  142 (162)
Q Consensus        67 ~~~~v~~~~~~p--~~~~l~~~~~d~~v~~wd~~~~~~~~~~~-~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~  142 (162)
                      |...|.+++|+|  +++++++++.|+.|++||+++++.+.... .+...+.++ |+|++.++++|+.|+.|++||+++++
T Consensus       124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~  203 (343)
T 3lrv_A          124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD  203 (343)
T ss_dssp             CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred             CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence            445799999999  99999999999999999999988766553 345579999 99999999999999999999999998


Q ss_pred             ee-eeecc-CCCceeEEEecCC
Q psy1859         143 RL-CQFHR-YDTGITSLCFSYD  162 (162)
Q Consensus       143 ~~-~~~~~-~~~~v~~v~~~pd  162 (162)
                      .+ ..+.. |.++|++++|+||
T Consensus       204 ~~~~~~~~~h~~~v~~l~fs~~  225 (343)
T 3lrv_A          204 QASSRFPVDEEAKIKEVKFADN  225 (343)
T ss_dssp             SCCEECCCCTTSCEEEEEECTT
T ss_pred             CCccEEeccCCCCEEEEEEeCC
Confidence            77 77887 9999999999986

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.90  E-value=3.1e-22  Score=144.47  Aligned_cols=143  Identities=20%  Similarity=0.174  Sum_probs=119.5

Q ss_pred             ecccccc-EEEEEEee--CCCeEEEEcCCCcEEEEEecCCcc----cceeeeeeeeeeeccCcccceeceEEEEecCCCC
Q psy1859           9 ESSLKFQ-TRCIKCFP--NKQGYVLSSIEGRAAVEYLDTGPE----MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN   81 (162)
Q Consensus         9 ~~~~~~~-~~~i~~~~--~~~~l~~~~~~g~i~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~   81 (162)
                      ...+... +.+++|+|  ++++|++++.||.|++|+++....    .......+..|         ...|.+++|+|+++
T Consensus        59 ~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~  129 (615)
T 1pgu_A           59 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL---------AGPISDISWDFEGR  129 (615)
T ss_dssp             ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC---------SSCEEEEEECTTSS
T ss_pred             EecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcc---------cccEEEEEEeCCCC
Confidence            3445667 99999999  999999999999999987753200    12333333433         34799999999999


Q ss_pred             EEEEecCC----CeEEEEeCCCccceeeeeecccceeEE-EcCCCC-EEEEecCCCeEEEEeCCCceeeeeeccCCC---
Q psy1859          82 TFATGGSD----GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYN-TFATGGSDGYVNIWDGFNKKRLCQFHRYDT---  152 (162)
Q Consensus        82 ~l~~~~~d----~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---  152 (162)
                      ++++++.+    +.|++||  .++.+..+..|...+.++ |+|+++ ++++++.|+.|++||+.+++.+..+..|..   
T Consensus       130 ~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~  207 (615)
T 1pgu_A          130 RLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGS  207 (615)
T ss_dssp             EEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTC
T ss_pred             EEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCc
Confidence            99999887    7899998  566778888899999999 999998 899999999999999999999999999998   


Q ss_pred             ceeEEEecCC
Q psy1859         153 GITSLCFSYD  162 (162)
Q Consensus       153 ~v~~v~~~pd  162 (162)
                      .|++++|+||
T Consensus       208 ~v~~~~~~~~  217 (615)
T 1pgu_A          208 FVRDVEFSPD  217 (615)
T ss_dssp             CEEEEEECST
T ss_pred             eEEEEEECCC
Confidence            9999999986

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.90  E-value=2.3e-22  Score=136.48  Aligned_cols=134  Identities=14%  Similarity=0.148  Sum_probs=110.6

Q ss_pred             cEEEEE----EeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecC---CCCEEEEec
Q psy1859          15 QTRCIK----CFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ---EYNTFATGG   87 (162)
Q Consensus        15 ~~~~i~----~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~l~~~~   87 (162)
                      .+.+++    |+|+++++++++.+|.+++|+.....    ... ...+         ...|.+++|+|   ++..+++++
T Consensus       166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~-~~~~---------~~~v~~~~~~~~~~~~~~l~~~~  231 (357)
T 3i2n_A          166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA----LRW-ETNI---------KNGVCSLEFDRKDISMNKLVATS  231 (357)
T ss_dssp             CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE----EEE-EEEC---------SSCEEEEEESCSSSSCCEEEEEE
T ss_pred             ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc----eee-ecCC---------CCceEEEEcCCCCCCCCEEEEEC
Confidence            677777    77899999999999999996655432    221 1222         33799999999   899999999


Q ss_pred             CCCeEEEEeCCCccceeeee-----ecccceeEE-EcCCCC-EEEEecCCCeEEEEeCCCc-------------------
Q psy1859          88 SDGYVNIWDGFNKKRLCQFH-----RYDTGITSL-FHQEYN-TFATGGSDGYVNIWDGFNK-------------------  141 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~~~-----~~~~~v~~~-~~~~~~-~l~~~~~d~~i~iwd~~~~-------------------  141 (162)
                      .|+.|++||+++++....+.     .|...+.++ |+|+++ ++++++.|+.|++||++++                   
T Consensus       232 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~  311 (357)
T 3i2n_A          232 LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSV  311 (357)
T ss_dssp             STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEE
T ss_pred             CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccccc
Confidence            99999999999887766655     788999999 999998 8999999999999999753                   


Q ss_pred             eeeeeeccCCCceeEEEecCC
Q psy1859         142 KRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       142 ~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +.+..+..|...|++++|+||
T Consensus       312 ~~~~~~~~~~~~v~~~~~s~~  332 (357)
T 3i2n_A          312 SLLQNVTLSTQPISSLDWSPD  332 (357)
T ss_dssp             EEEEEEECCSSCEEEEEECSS
T ss_pred             ceeeccccCCCCeeEEEEcCC
Confidence            456677889999999999986

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.90  E-value=1.1e-21  Score=131.24  Aligned_cols=147  Identities=13%  Similarity=0.195  Sum_probs=110.5

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeecc-----------------------------
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE-----------------------------   62 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~-----------------------------   62 (162)
                      ....|.+++|+|+++++++|+.||.|++|+....+    ....+.+|....                             
T Consensus        66 ~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~----~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~  141 (318)
T 4ggc_A           66 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK----RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH  141 (318)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE----EEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC
T ss_pred             CCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce----eEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCce
Confidence            44568999999999999999999999997765432    222222221100                             


Q ss_pred             ---CcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCcccee----ee-----------------------------
Q psy1859          63 ---DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC----QF-----------------------------  106 (162)
Q Consensus        63 ---~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~----~~-----------------------------  106 (162)
                         ...+|...+..++++++++++++++.|+.|++||+++++...    ..                             
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  221 (318)
T 4ggc_A          142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR  221 (318)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTC
T ss_pred             eEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCC
Confidence               123567789999999999999999999999999998653110    00                             


Q ss_pred             ---------------eecccceeEE-EcCCCCEEEEec--CCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         107 ---------------HRYDTGITSL-FHQEYNTFATGG--SDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       107 ---------------~~~~~~v~~~-~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                                     ..+...+..+ |+|++..+++++  .|+.|++||+++++++.++.+|.+.|++++|+||
T Consensus       222 ~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spd  295 (318)
T 4ggc_A          222 HIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD  295 (318)
T ss_dssp             EEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             EEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence                           0112345566 888888776654  7999999999999999999999999999999996

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.90  E-value=5.8e-22  Score=137.22  Aligned_cols=140  Identities=16%  Similarity=0.181  Sum_probs=114.1

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEec
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGG   87 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~   87 (162)
                      ...+...+.+++|+|++++|++++.|+.|++|+...    ......+..|.         ..|.+++|+|++ .++++++
T Consensus       213 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~----~~~~~~~~~~~---------~~v~~~~~~p~~~~ll~~~~  279 (401)
T 4aez_A          213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS----SIPKFTKTNHN---------AAVKAVAWCPWQSNLLATGG  279 (401)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC----SSEEEEECCCS---------SCCCEEEECTTSTTEEEEEC
T ss_pred             EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC----CCccEEecCCc---------ceEEEEEECCCCCCEEEEec
Confidence            344667889999999999999999999999966553    33344444443         379999999987 6677755


Q ss_pred             --CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEE--ecCCCeEEEEeCCCceeee--eeccCCCceeEEEec
Q psy1859          88 --SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFAT--GGSDGYVNIWDGFNKKRLC--QFHRYDTGITSLCFS  160 (162)
Q Consensus        88 --~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~--~~~~~~~~v~~v~~~  160 (162)
                        .|+.|++||+++++.+..+. +...+.++ |+|+++++++  |+.|+.|++||+.+++...  .+.+|...|.+++|+
T Consensus       280 gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s  358 (401)
T 4aez_A          280 GTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS  358 (401)
T ss_dssp             CTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC
T ss_pred             CCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC
Confidence              79999999999998888775 56789999 9999999999  5589999999999866544  466899999999999


Q ss_pred             CC
Q psy1859         161 YD  162 (162)
Q Consensus       161 pd  162 (162)
                      ||
T Consensus       359 ~d  360 (401)
T 4aez_A          359 PD  360 (401)
T ss_dssp             TT
T ss_pred             CC
Confidence            86

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.90  E-value=7e-22  Score=134.10  Aligned_cols=144  Identities=17%  Similarity=0.279  Sum_probs=111.9

Q ss_pred             cceeeeccccccEEEEEEeeCCCeEE-EEcC---CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC
Q psy1859           4 IMQRRESSLKFQTRCIKCFPNKQGYV-LSSI---EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE   79 (162)
Q Consensus         4 ~~~~~~~~~~~~~~~i~~~~~~~~l~-~~~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~   79 (162)
                      ........+...+.+++|+|++..++ +++.   |+.++||+++...  ...... ..|         ...|.+++|+|+
T Consensus         9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~--~~~~~~-~~~---------~~~v~~~~~~~~   76 (357)
T 3i2n_A            9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD--LKLLRE-IEK---------AKPIKCGTFGAT   76 (357)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS--EEEEEE-EEE---------SSCEEEEECTTC
T ss_pred             HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc--ccceee-ecc---------cCcEEEEEEcCC
Confidence            33444455778999999999986655 5555   8999998776533  222222 123         337999999998


Q ss_pred             ---CCEEEEecCCCeEEEEeCCCcc-ceeeeeecccceeEE-E------cCCCCEEEEecCCCeEEEEeCCCce-eeeee
Q psy1859          80 ---YNTFATGGSDGYVNIWDGFNKK-RLCQFHRYDTGITSL-F------HQEYNTFATGGSDGYVNIWDGFNKK-RLCQF  147 (162)
Q Consensus        80 ---~~~l~~~~~d~~v~~wd~~~~~-~~~~~~~~~~~v~~~-~------~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~  147 (162)
                         +.+|++++.|+.|++||+.+++ .+..+..|...+.++ |      +|++++|++++.|+.|++||+++++ .+..+
T Consensus        77 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  156 (357)
T 3i2n_A           77 SLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM  156 (357)
T ss_dssp             CTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred             CCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceec
Confidence               6999999999999999999987 788888999999998 6      5789999999999999999999886 66667


Q ss_pred             ccCCC----ceeEEEe
Q psy1859         148 HRYDT----GITSLCF  159 (162)
Q Consensus       148 ~~~~~----~v~~v~~  159 (162)
                      ..|.+    .+.+++|
T Consensus       157 ~~~~~~~~~~v~~~~~  172 (357)
T 3i2n_A          157 EPVQGENKRDCWTVAF  172 (357)
T ss_dssp             CCCTTSCCCCEEEEEE
T ss_pred             cccCCCCCCceEEEEE
Confidence            65544    7888884

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.89  E-value=3.6e-21  Score=129.91  Aligned_cols=152  Identities=18%  Similarity=0.205  Sum_probs=119.1

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeee------e----------eeee--------------e
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKY------A----------FKCH--------------R   59 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~------~----------~~~~--------------~   59 (162)
                      ..+...+.+++|+|++++|++++.|+.+++|+............      .          +.+.              .
T Consensus        83 ~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~  162 (340)
T 4aow_A           83 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK  162 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred             eCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce
Confidence            33467789999999999999999999999977644321100000      0          0000              0


Q ss_pred             eccCcccceeceEEEEecCCC--CEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEE
Q psy1859          60 IKEDGIEKIYPVNAISFHQEY--NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIW  136 (162)
Q Consensus        60 ~~~~~~~~~~~v~~~~~~p~~--~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iw  136 (162)
                      ......+|...+..++|++++  .++++++.|+.|++||+++++.+..+..|...|+++ |+|++++|++++.|+.|++|
T Consensus       163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iw  242 (340)
T 4aow_A          163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW  242 (340)
T ss_dssp             EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            000234567789999998875  578899999999999999999999999999999999 99999999999999999999


Q ss_pred             eCCCceeeeeeccCCCceeEEEecCC
Q psy1859         137 DGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       137 d~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |+++.+.+..+.. ...|.+++|+|+
T Consensus       243 d~~~~~~~~~~~~-~~~v~~~~~~~~  267 (340)
T 4aow_A          243 DLNEGKHLYTLDG-GDIINALCFSPN  267 (340)
T ss_dssp             ETTTTEEEEEEEC-SSCEEEEEECSS
T ss_pred             EeccCceeeeecC-CceEEeeecCCC
Confidence            9999998888874 457999999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.89  E-value=1e-21  Score=145.99  Aligned_cols=141  Identities=17%  Similarity=0.202  Sum_probs=120.7

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecC-CCCEEEEecC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ-EYNTFATGGS   88 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~   88 (162)
                      ..+...+.+++|+|+++++++++.||.+++|+++...   .....+..|.         ..|.+++|+| ++..+++++.
T Consensus        94 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~---~~~~~~~~~~---------~~v~~~~~~p~~~~~l~~~~~  161 (814)
T 3mkq_A           94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW---ALEQTFEGHE---------HFVMCVAFNPKDPSTFASGCL  161 (814)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS---EEEEEEECCS---------SCEEEEEEETTEEEEEEEEET
T ss_pred             ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc---eEEEEEcCCC---------CcEEEEEEEcCCCCEEEEEeC
Confidence            3456778999999999999999999999998876532   3333444444         3799999999 7899999999


Q ss_pred             CCeEEEEeCCCccceeeeeecc-cceeEE-EcC--CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRYD-TGITSL-FHQ--EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~~-~~v~~~-~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |+.|++||+.+++....+..+. ..+..+ |+|  ++.++++++.|+.|++||+++++.+..+..|...|.+++|+|+
T Consensus       162 dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~  239 (814)
T 3mkq_A          162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT  239 (814)
T ss_dssp             TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred             CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence            9999999999887777776554 788899 999  9999999999999999999999999999999999999999986

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.89  E-value=2.8e-21  Score=134.53  Aligned_cols=143  Identities=17%  Similarity=0.215  Sum_probs=114.5

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEE--e
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFAT--G   86 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~--~   86 (162)
                      ..+...+..+.++|+++++++++.|+.+++|+................         |...|.+++|+|.+ .++++  |
T Consensus       227 ~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~---------~~~~V~~~~~~p~~~~~la~~~g  297 (420)
T 4gga_A          227 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ---------HQGAVKAVAWCPWQSNVLATGGG  297 (420)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECC---------CSSCEEEEEECTTCTTEEEEEEC
T ss_pred             cccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecc---------cCCceeeeeeCCCcccEEEEEee
Confidence            345566788999999999999999999999776654321222222222         44479999999987 56654  4


Q ss_pred             cCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEec--CCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          87 GSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGG--SDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +.|+.|++||+.++++...+..+ ..+..+ |+|+++.+++++  .|+.|++||+.+++++.++.+|.+.|++++|+||
T Consensus       298 s~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spd  375 (420)
T 4gga_A          298 TSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD  375 (420)
T ss_dssp             TTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             cCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence            68999999999999888877654 567777 999999888764  7899999999999999999999999999999997

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.89  E-value=1.4e-21  Score=132.08  Aligned_cols=134  Identities=14%  Similarity=0.223  Sum_probs=112.0

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecC-CcccceeeeeeeeeeeccCcccceeceEEEEecC-CCCEEEEecCC
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDT-GPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ-EYNTFATGGSD   89 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d   89 (162)
                      +...+.+++|+|++  +++++.++.+++|+... ..  .........         |...+.+++|+| +++++++++.|
T Consensus       149 ~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~---------~~~~i~~i~~~~~~~~~l~~~~~d  215 (342)
T 1yfq_A          149 VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCED--DNGTIEESG---------LKYQIRDVALLPKEQEGYACSSID  215 (342)
T ss_dssp             SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTT--CCCEEEECS---------CSSCEEEEEECSGGGCEEEEEETT
T ss_pred             eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccc--ccceeeecC---------CCCceeEEEECCCCCCEEEEEecC
Confidence            56788999999887  89999999999977664 22  111111112         333799999999 99999999999


Q ss_pred             CeEEEEeCCCc------cceeeeeeccc---------ceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccC-CC
Q psy1859          90 GYVNIWDGFNK------KRLCQFHRYDT---------GITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY-DT  152 (162)
Q Consensus        90 ~~v~~wd~~~~------~~~~~~~~~~~---------~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~  152 (162)
                      |.+++|+++..      +....+..|..         .+.++ |+|++++|++++.||.|++||+++++.+..+..| ..
T Consensus       216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~  295 (342)
T 1yfq_A          216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED  295 (342)
T ss_dssp             SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS
T ss_pred             CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC
Confidence            99999999886      67777877755         89999 9999999999999999999999999999999988 99


Q ss_pred             ceeEEE
Q psy1859         153 GITSLC  158 (162)
Q Consensus       153 ~v~~v~  158 (162)
                      .|++++
T Consensus       296 ~v~~~~  301 (342)
T 1yfq_A          296 SVVKIA  301 (342)
T ss_dssp             EEEEEE
T ss_pred             CceEec
Confidence            999987

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.89  E-value=1.9e-22  Score=139.46  Aligned_cols=116  Identities=12%  Similarity=0.037  Sum_probs=92.1

Q ss_pred             EEEeeCCCeEEEEcCCCcEEEEEecCCcccc-eeeeeeeeeeeccCcccceeceEEEEecC--------CCCEEEEecCC
Q psy1859          19 IKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQ-KMKYAFKCHRIKEDGIEKIYPVNAISFHQ--------EYNTFATGGSD   89 (162)
Q Consensus        19 i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--------~~~~l~~~~~d   89 (162)
                      ..+.+++.++++++.|++|+||+.+..+... .....+.+         |.+.|.+++|+|        ++++|++++.|
T Consensus        95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~g---------H~~~v~~v~~~p~~~~~~~~d~~~las~s~D  165 (393)
T 4gq1_A           95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSG---------HHNFVNDIDIADVYSADNRLAEQVIASVGDD  165 (393)
T ss_dssp             --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTS---------CSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred             eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCC---------CCCceEEEEEccccccccCCCCCEEEEEECC
Confidence            3345567789999999999998876543111 11122333         555899999998        78899999999


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCC-EEEEecCCCeEEEEeCCCcee
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYN-TFATGGSDGYVNIWDGFNKKR  143 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~iwd~~~~~~  143 (162)
                      ++|++||++++.++..+..|...+.++ |+|++. +|++++.|++|++||+++++.
T Consensus       166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~  221 (393)
T 4gq1_A          166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLS  221 (393)
T ss_dssp             SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-
T ss_pred             CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcc
Confidence            999999999888888888899999999 999874 899999999999999988754

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.89  E-value=4.5e-21  Score=134.73  Aligned_cols=141  Identities=18%  Similarity=0.196  Sum_probs=116.9

Q ss_pred             ccccccEEEEEEee--CCCeEEEEcCCCcEEEEEecCCccccee-------------------eeeeeeeeeccCcccce
Q psy1859          10 SSLKFQTRCIKCFP--NKQGYVLSSIEGRAAVEYLDTGPEMQKM-------------------KYAFKCHRIKEDGIEKI   68 (162)
Q Consensus        10 ~~~~~~~~~i~~~~--~~~~l~~~~~~g~i~i~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~   68 (162)
                      ..+...+.++++++  +++++++++.||.+++|+..........                   ...+.         +|.
T Consensus       200 ~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~  270 (464)
T 3v7d_B          200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR---------GHM  270 (464)
T ss_dssp             CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC---------CCS
T ss_pred             CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc---------Ccc
Confidence            34567889999985  6789999999999999877643311100                   11112         244


Q ss_pred             eceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeee
Q psy1859          69 YPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQF  147 (162)
Q Consensus        69 ~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  147 (162)
                      ..+.++  ++++.++++++.|+.|++||+++++.+..+..|...+.++ |+|+++++++++.|+.|++||+++++++..+
T Consensus       271 ~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  348 (464)
T 3v7d_B          271 ASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  348 (464)
T ss_dssp             SCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            467766  6778999999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             ccCCCceeEEEecC
Q psy1859         148 HRYDTGITSLCFSY  161 (162)
Q Consensus       148 ~~~~~~v~~v~~~p  161 (162)
                      .+|...|.+++|++
T Consensus       349 ~~h~~~v~~~~~~~  362 (464)
T 3v7d_B          349 QGHTALVGLLRLSD  362 (464)
T ss_dssp             CCCSSCEEEEEECS
T ss_pred             eCCCCcEEEEEEcC
Confidence            99999999999986

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.88  E-value=9.9e-21  Score=126.34  Aligned_cols=137  Identities=14%  Similarity=0.145  Sum_probs=113.8

Q ss_pred             eeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe
Q psy1859           7 RRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG   86 (162)
Q Consensus         7 ~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~   86 (162)
                      .....+...+.+++| |++++|++++.||.|++|+.+.    ......+..|.         ..|.+++|+|++.+++++
T Consensus        12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~----~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~   77 (313)
T 3odt_A           12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD----QWLGTVVYTGQ---------GFLNSVCYDSEKELLLFG   77 (313)
T ss_dssp             EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESS----SEEEEEEEECS---------SCEEEEEEETTTTEEEEE
T ss_pred             HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC----CEEEEEeecCC---------ccEEEEEECCCCCEEEEe
Confidence            344556788999999 9999999999999999977654    23333344443         379999999999999999


Q ss_pred             cCCCeEEEEeCCCc---cceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          87 GSDGYVNIWDGFNK---KRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        87 ~~d~~v~~wd~~~~---~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      +.|+.+++|++...   +.+..+..|...+.++ |  +++++++++.|+.|++||  .++.+..+..|...+.+++|.|
T Consensus        78 ~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~  152 (313)
T 3odt_A           78 GKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVS  152 (313)
T ss_dssp             ETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEE
T ss_pred             cCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEcc
Confidence            99999999998864   4567777889999999 8  578999999999999999  6677888889999999999976

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.88  E-value=5.6e-21  Score=147.63  Aligned_cols=123  Identities=17%  Similarity=0.240  Sum_probs=105.9

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC--CCEEEEecC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE--YNTFATGGS   88 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~   88 (162)
                      .+...+.+++|+|+++++++++.|+.|++|++..    .+....+.+|..         .|.+++|+|+  +.++++++.
T Consensus       655 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~----~~~~~~~~~~~~---------~v~~~~~~~~~~~~~l~sg~~  721 (1249)
T 3sfz_A          655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT----GKLVHTYDEHSE---------QVNCCHFTNKSNHLLLATGSN  721 (1249)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----CCEEEEEECCSS---------CEEEEEECSSSSCCEEEEEET
T ss_pred             cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC----CceEEEEcCCCC---------cEEEEEEecCCCceEEEEEeC
Confidence            4567889999999999999999999999976654    344555555544         7999999994  468999999


Q ss_pred             CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeee
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQ  146 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  146 (162)
                      |+.|++||+++++.+..+..|...+.++ |+|+++++++++.|+.|++||+++++....
T Consensus       722 d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~  780 (1249)
T 3sfz_A          722 DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKS  780 (1249)
T ss_dssp             TSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEE
T ss_pred             CCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccce
Confidence            9999999999999999999999999999 999999999999999999999987765443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.88  E-value=1.5e-21  Score=134.94  Aligned_cols=139  Identities=11%  Similarity=0.018  Sum_probs=91.9

Q ss_pred             ccccccEEEEEEee--------CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-
Q psy1859          10 SSLKFQTRCIKCFP--------NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-   80 (162)
Q Consensus        10 ~~~~~~~~~i~~~~--------~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-   80 (162)
                      ..+.+.|.+++|+|        ++++|++++.|++|+||+....    .....+..|.         .+|.+++|+|++ 
T Consensus       133 ~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~----~~~~~~~~~~---------~~v~~v~~~p~~~  199 (393)
T 4gq1_A          133 SGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE----GPILAGYPLS---------SPGISVQFRPSNP  199 (393)
T ss_dssp             TSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT----EEEEEEEECS---------SCEEEEEEETTEE
T ss_pred             CCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC----ceeeeecCCC---------CCcEEEEECCCCC
Confidence            34566789999998        7899999999999999776543    2333333443         379999999987 


Q ss_pred             CEEEEecCCCeEEEEeCCCccceeee-------------------------eecccceeEE-Ec-CCCCEEEEecCCCeE
Q psy1859          81 NTFATGGSDGYVNIWDGFNKKRLCQF-------------------------HRYDTGITSL-FH-QEYNTFATGGSDGYV  133 (162)
Q Consensus        81 ~~l~~~~~d~~v~~wd~~~~~~~~~~-------------------------~~~~~~v~~~-~~-~~~~~l~~~~~d~~i  133 (162)
                      .+|++++.|+.|++||+++++.....                         ..|...+.++ |+ |+++.+++++.|+.+
T Consensus       200 ~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i  279 (393)
T 4gq1_A          200 NQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAW  279 (393)
T ss_dssp             EEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEE
T ss_pred             ceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCE
Confidence            58999999999999999876533221                         2355677788 55 799999999999999


Q ss_pred             EEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859         134 NIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus       134 ~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      ++||+.+++....+..|...+..+.+.|
T Consensus       280 ~vwd~~~~~~~~~l~~~~~~~~~~~~~~  307 (393)
T 4gq1_A          280 LRWNLFANNDYNEISDSTMKLGPKNLLP  307 (393)
T ss_dssp             EEEEC-------------------CCSC
T ss_pred             EEEECccCCCCceEeeecCccccEEEcc
Confidence            9999998887777776766666666555

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.87  E-value=1.6e-20  Score=129.38  Aligned_cols=137  Identities=18%  Similarity=0.247  Sum_probs=112.6

Q ss_pred             ccccEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC---CEEEEec
Q psy1859          12 LKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY---NTFATGG   87 (162)
Q Consensus        12 ~~~~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~l~~~~   87 (162)
                      +...+.+++|+| ++++|++++.||.+++|+.+..    .....+. +.         ..+.++.|+|.+   .++++++
T Consensus        98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~  163 (408)
T 4a11_B           98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL----QTADVFN-FE---------ETVYSHHMSPVSTKHCLVAVGT  163 (408)
T ss_dssp             CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT----EEEEEEE-CS---------SCEEEEEECSSCSSCCEEEEEE
T ss_pred             CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC----ccceecc-CC---------CceeeeEeecCCCCCcEEEEEc
Confidence            667899999999 7789999999999999766543    2222222 22         268899998854   4999999


Q ss_pred             CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCC-EEEEecCCCeEEEEeCCCce-eeeee---------------cc
Q psy1859          88 SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYN-TFATGGSDGYVNIWDGFNKK-RLCQF---------------HR  149 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~iwd~~~~~-~~~~~---------------~~  149 (162)
                      .|+.|++||+++++.+..+..|...+.++ |+|+++ ++++++.|+.|++||++++. .+..+               ..
T Consensus       164 ~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (408)
T 4a11_B          164 RGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA  243 (408)
T ss_dssp             SSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCS
T ss_pred             CCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccccc
Confidence            99999999999999999999999999999 999998 58999999999999998765 33333               46


Q ss_pred             CCCceeEEEecCC
Q psy1859         150 YDTGITSLCFSYD  162 (162)
Q Consensus       150 ~~~~v~~v~~~pd  162 (162)
                      |...|.+++|+||
T Consensus       244 ~~~~v~~~~~~~~  256 (408)
T 4a11_B          244 HNGKVNGLCFTSD  256 (408)
T ss_dssp             CSSCEEEEEECTT
T ss_pred             ccCceeEEEEcCC
Confidence            8889999999986

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.87  E-value=2.1e-20  Score=131.37  Aligned_cols=138  Identities=15%  Similarity=0.160  Sum_probs=112.4

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEec--CCCCEEEEec
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH--QEYNTFATGG   87 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~l~~~~   87 (162)
                      ..+.+.+.+++|+|++ .+++|+.||.|++|+++.    .+....+.+|.         ..|.+++|+  +++.++++++
T Consensus       159 ~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~----~~~~~~~~~h~---------~~v~~l~~~~~~~~~~l~s~s  224 (464)
T 3v7d_B          159 SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK----GCCTHVFEGHN---------STVRCLDIVEYKNIKYIVTGS  224 (464)
T ss_dssp             CCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT----TEEEEEECCCS---------SCEEEEEEEESSSCEEEEEEE
T ss_pred             eCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC----CcEEEEECCCC---------CccEEEEEecCCCCCEEEEEc
Confidence            3567789999999987 899999999999976653    33444555544         379999998  5678999999


Q ss_pred             CCCeEEEEeCCCccce-----------------------eeeeecccceeEEEcCCCCEEEEecCCCeEEEEeCCCceee
Q psy1859          88 SDGYVNIWDGFNKKRL-----------------------CQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRL  144 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~-----------------------~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  144 (162)
                      .|+.|++||++++...                       ..+..|...+.+ +++++.++++++.|+.|++||+++++++
T Consensus       225 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~l~~~~~d~~i~vwd~~~~~~~  303 (464)
T 3v7d_B          225 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT-VSGHGNIVVSGSYDNTLIVWDVAQMKCL  303 (464)
T ss_dssp             TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEE-EEEETTEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEE-EcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            9999999999876532                       234455555555 4778999999999999999999999999


Q ss_pred             eeeccCCCceeEEEecCC
Q psy1859         145 CQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       145 ~~~~~~~~~v~~v~~~pd  162 (162)
                      ..+.+|...|.+++|+||
T Consensus       304 ~~~~~~~~~v~~~~~~~~  321 (464)
T 3v7d_B          304 YILSGHTDRIYSTIYDHE  321 (464)
T ss_dssp             EEECCCSSCEEEEEEETT
T ss_pred             EEecCCCCCEEEEEEcCC
Confidence            999999999999999986

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.86  E-value=3.3e-20  Score=126.74  Aligned_cols=75  Identities=12%  Similarity=0.288  Sum_probs=69.8

Q ss_pred             ceeceEEEEecCCCCEEEEecCCCe-EEEEeCCCccceeeee-e-cccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc
Q psy1859          67 KIYPVNAISFHQEYNTFATGGSDGY-VNIWDGFNKKRLCQFH-R-YDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK  141 (162)
Q Consensus        67 ~~~~v~~~~~~p~~~~l~~~~~d~~-v~~wd~~~~~~~~~~~-~-~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~  141 (162)
                      |...|.+++|+|++++|++++.|+. |++||+++++.+..+. + |...+.++ |+|++++|++++.|++|++||++.+
T Consensus       194 h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          194 HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             cCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            4558999999999999999999998 9999999999999888 4 88999999 9999999999999999999999765

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.86  E-value=1.2e-20  Score=131.42  Aligned_cols=131  Identities=13%  Similarity=0.200  Sum_probs=98.2

Q ss_pred             eccccccEEEEEEeeCCC-eEEE--EcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEE
Q psy1859           9 ESSLKFQTRCIKCFPNKQ-GYVL--SSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFAT   85 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~-~l~~--~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~   85 (162)
                      .......+.+++|+|.+. .+++  |+.|+.|++|+..  +  ......+..+.          .+.++.|+|++..+++
T Consensus       272 ~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~--t--~~~~~~~~~~~----------~v~~~~~~~~~~~lv~  337 (420)
T 4gga_A          272 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC--S--GACLSAVDAHS----------QVCSILWSPHYKELIS  337 (420)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT--T--TEEEEEEECSS----------CEEEEEEETTTTEEEE
T ss_pred             ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC--c--cccceeecccc----------ceeeeeecCCCCeEEE
Confidence            344567889999999755 4444  4578999996554  3  33343433333          5899999999988776


Q ss_pred             ec--CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCc
Q psy1859          86 GG--SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG  153 (162)
Q Consensus        86 ~~--~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  153 (162)
                      ++  .|+.|++||+.+++++..+.+|...|+++ |+|+|++|++|+.|++|++||+....+....+.+...
T Consensus       338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~  408 (420)
T 4gga_A          338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKAS  408 (420)
T ss_dssp             EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---------
T ss_pred             EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCC
Confidence            54  78999999999999999999999999999 9999999999999999999999876655555444433

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.86  E-value=3.1e-20  Score=126.83  Aligned_cols=77  Identities=13%  Similarity=0.125  Sum_probs=68.8

Q ss_pred             ecCCCeEEEEeCCCcc---------------c-eeeeeecccceeEE-EcCCCCEEEEecCCCe-EEEEeCCCceeeeee
Q psy1859          86 GGSDGYVNIWDGFNKK---------------R-LCQFHRYDTGITSL-FHQEYNTFATGGSDGY-VNIWDGFNKKRLCQF  147 (162)
Q Consensus        86 ~~~d~~v~~wd~~~~~---------------~-~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~  147 (162)
                      ++.||.|++||+++++               + +..+.+|...|.++ |+|+|++|++++.|++ |++||+++++++..+
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~  234 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF  234 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            6789999999998765               2 67788999999999 9999999999999998 999999999999999


Q ss_pred             c-c-CCCceeEEEecCC
Q psy1859         148 H-R-YDTGITSLCFSYD  162 (162)
Q Consensus       148 ~-~-~~~~v~~v~~~pd  162 (162)
                      . + |...|++++|+||
T Consensus       235 ~~g~h~~~v~~~~~s~~  251 (355)
T 3vu4_A          235 RRGLDRADVVDMKWSTD  251 (355)
T ss_dssp             ECTTCCSCEEEEEECTT
T ss_pred             EcCCCCCcEEEEEECCC
Confidence            8 5 9999999999996

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.84  E-value=3.6e-19  Score=124.39  Aligned_cols=132  Identities=14%  Similarity=0.259  Sum_probs=108.5

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .+...+.++++  +++++++|+.||.|++|+++..    +....+..|.         ..|.+++|++  ..+++++.|+
T Consensus       171 ~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~---------~~v~~l~~~~--~~l~s~s~dg  233 (435)
T 1p22_A          171 GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG----EMLNTLIHHC---------EAVLHLRFNN--GMMVTCSKDR  233 (435)
T ss_dssp             CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC----CEEEEECCCC---------SCEEEEECCT--TEEEEEETTS
T ss_pred             CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC----cEEEEEcCCC---------CcEEEEEEcC--CEEEEeeCCC
Confidence            45567788887  7889999999999999766542    3344444443         4799999975  5999999999


Q ss_pred             eEEEEeCCCccce---eeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          91 YVNIWDGFNKKRL---CQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        91 ~v~~wd~~~~~~~---~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      .|++||+++++..   ..+..|...+.++ |  +++++++++.|+.|++||+++++.+..+..|...|.+++|++
T Consensus       234 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  306 (435)
T 1p22_A          234 SIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD  306 (435)
T ss_dssp             CEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET
T ss_pred             cEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCC
Confidence            9999999987655   5666788889988 8  788999999999999999999999999999999999998864

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.84  E-value=8.7e-20  Score=127.52  Aligned_cols=134  Identities=15%  Similarity=0.214  Sum_probs=111.9

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      .......+.++++  +++++++|+.||.+++|+...    .+....+.+|..         .|.+++|+  +.++++++.
T Consensus       252 ~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~---------~v~~~~~~--~~~l~~g~~  314 (435)
T 1p22_A          252 LVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTST----CEFVRTLNGHKR---------GIACLQYR--DRLVVSGSS  314 (435)
T ss_dssp             ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTT----CCEEEEEECCSS---------CEEEEEEE--TTEEEEEET
T ss_pred             ecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCc----CcEEEEEcCCCC---------cEEEEEeC--CCEEEEEeC
Confidence            3445567778887  788999999999999966543    344455555443         79999984  689999999


Q ss_pred             CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCce---------eeeeeccCCCceeEEE
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKK---------RLCQFHRYDTGITSLC  158 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~v~~v~  158 (162)
                      |+.|++||+++++.+..+..|...+.++ |  ++.++++|+.||.|++||++++.         ++..+..|.+.|.+++
T Consensus       315 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  392 (435)
T 1p22_A          315 DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ  392 (435)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEE
Confidence            9999999999999999999999999999 8  78899999999999999997765         7888889999999999


Q ss_pred             ecC
Q psy1859         159 FSY  161 (162)
Q Consensus       159 ~~p  161 (162)
                      |.+
T Consensus       393 ~~~  395 (435)
T 1p22_A          393 FDE  395 (435)
T ss_dssp             ECS
T ss_pred             eCC
Confidence            854

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.84  E-value=1.6e-19  Score=120.76  Aligned_cols=134  Identities=14%  Similarity=0.200  Sum_probs=105.4

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEE
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI   94 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~   94 (162)
                      ...+|+||+++ .|++ +.|++|+||+.+..    +....+..+.       |...|.+++|+|++++|++|+.|+.|++
T Consensus        27 y~~~l~WS~~~-~lAv-g~D~tV~iWd~~tg----~~~~~~~~~~-------~~~~V~~v~~~~~~~~l~sgs~Dg~v~i   93 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAV-ALDNSVYLWSASSG----DILQLLQMEQ-------PGEYISSVAWIKEGNYLAVGTSSAEVQL   93 (318)
T ss_dssp             TCBCEEECTTS-EEEE-EETTEEEEEETTTC----CEEEEEECCS-------TTCCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cceEEEECCCC-EEEE-EeCCEEEEEECCCC----CEEEEEEecC-------CCCeEEEEEECCCCCEEEEEECCCcEEE
Confidence            35679999875 5555 45899999665432    2333333222       3347999999999999999999999999


Q ss_pred             EeCCCccceeeeeecccceeEEEcCCCCEEEEecCCCeEEEEeCCCce-eeeeeccCCCceeEEEecCC
Q psy1859          95 WDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKK-RLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        95 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ||+++++.+..+..|...+.++ ++++..+++++.++.+++|+..... .+..+.+|...+..+.|+++
T Consensus        94 w~~~~~~~~~~~~~h~~~~~~~-~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (318)
T 4ggc_A           94 WDVQQQKRLRNMTSHSARVGSL-SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD  161 (318)
T ss_dssp             EETTTTEEEEEEECCSSCEEEE-EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred             eecCCceeEEEecCccceEEEe-ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCC
Confidence            9999999999998888777665 4567899999999999999997654 56677889999999998774

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.84  E-value=5.4e-19  Score=123.76  Aligned_cols=125  Identities=14%  Similarity=0.128  Sum_probs=103.2

Q ss_pred             EEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCC
Q psy1859          20 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN   99 (162)
Q Consensus        20 ~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~   99 (162)
                      ++.++++++++|+.||.|++|+...    .+....+.+|.         ..|.+++|+  +..+++++.|+.|++||+.+
T Consensus       124 ~~~~~g~~l~sg~~dg~i~vwd~~~----~~~~~~~~~h~---------~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~  188 (445)
T 2ovr_B          124 CLQFCGNRIVSGSDDNTLKVWSAVT----GKCLRTLVGHT---------GGVWSSQMR--DNIIISGSTDRTLKVWNAET  188 (445)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTT----CCEEEECCCCS---------SCEEEEEEE--TTEEEEEETTSCEEEEETTT
T ss_pred             EEEEcCCEEEEEECCCcEEEEECCC----CcEEEEEcCCC---------CCEEEEEec--CCEEEEEeCCCeEEEEECCc
Confidence            3556789999999999999976653    33444555544         379999997  56899999999999999999


Q ss_pred             ccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859         100 KKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus       100 ~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      ++.+..+..|...+.++ |+  ++++++++.|+.|++||+++++.+..+..|...|.+++|..
T Consensus       189 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~  249 (445)
T 2ovr_B          189 GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG  249 (445)
T ss_dssp             TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECS
T ss_pred             CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECC
Confidence            98888888888899988 85  56799999999999999999888888888999999988843

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.83  E-value=9.5e-20  Score=127.56  Aligned_cols=143  Identities=8%  Similarity=0.052  Sum_probs=105.9

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcc------cceeeeeeeeeeeccCcccceeceEEEEecCCCCEEE----
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPE------MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA----   84 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~----   84 (162)
                      ....+++++++.++++++.++ +++|..+....      ...........    ....+...|.+++|+|++++|+    
T Consensus        38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~l~~spdg~~lav~~~  112 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQG----LLVPMKFPIHHLALSCDNLTLSACMM  112 (434)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCC----EEECCSSCEEEEEECTTSCEEEEEEE
T ss_pred             CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcc----ccccCCCcccEEEEcCCCCEEEEEEe
Confidence            467799999999999998887 77754321000      00000000000    0112344699999999999999    


Q ss_pred             EecCCCeEEEEeCCCc--------cc---eeeeeecccceeEE-EcCC-CCEEEEecCCCeEEEEeCCCceeeeeeccCC
Q psy1859          85 TGGSDGYVNIWDGFNK--------KR---LCQFHRYDTGITSL-FHQE-YNTFATGGSDGYVNIWDGFNKKRLCQFHRYD  151 (162)
Q Consensus        85 ~~~~d~~v~~wd~~~~--------~~---~~~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  151 (162)
                      +++.|+.|++||++++        ++   +..+..|...+.++ |+|+ +.+|++++.|++|++||++++..+.....|.
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~  192 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPST  192 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGG
T ss_pred             ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCC
Confidence            7889999999998765        22   34455688999999 9997 8899999999999999999987776667788


Q ss_pred             CceeEEEecCC
Q psy1859         152 TGITSLCFSYD  162 (162)
Q Consensus       152 ~~v~~v~~~pd  162 (162)
                      ..|++++|+||
T Consensus       193 ~~v~~v~wspd  203 (434)
T 2oit_A          193 VAVTSVCWSPK  203 (434)
T ss_dssp             GCEEEEEECTT
T ss_pred             CceeEEEEcCC
Confidence            99999999986

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.83  E-value=1.7e-18  Score=121.23  Aligned_cols=131  Identities=15%  Similarity=0.180  Sum_probs=106.0

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .+...+.+++++  ++.+++++.||.|++|+++.    .+....+.+|..         .|.+++|+  +..+++++.|+
T Consensus       157 ~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~----~~~~~~~~~h~~---------~v~~~~~~--~~~l~s~s~dg  219 (445)
T 2ovr_B          157 GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET----GECIHTLYGHTS---------TVRCMHLH--EKRVVSGSRDA  219 (445)
T ss_dssp             CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT----TEEEEEECCCSS---------CEEEEEEE--TTEEEEEETTS
T ss_pred             CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc----CcEEEEECCCCC---------cEEEEEec--CCEEEEEeCCC
Confidence            455677888887  67899999999999976654    334444444443         78888885  46789999999


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEec
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS  160 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  160 (162)
                      .|++||+.+++.+..+..|...+.++ |  ++.++++++.|+.|++||+++++.+..+..|...|.+++|.
T Consensus       220 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  288 (445)
T 2ovr_B          220 TLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD  288 (445)
T ss_dssp             EEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC
T ss_pred             EEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEEC
Confidence            99999999888888888888888888 8  67889999999999999998888888888888888888874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.81  E-value=9.4e-18  Score=115.40  Aligned_cols=134  Identities=7%  Similarity=0.030  Sum_probs=104.8

Q ss_pred             cccEEEEEEeeCCCeE-EEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEE-EecCCC
Q psy1859          13 KFQTRCIKCFPNKQGY-VLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA-TGGSDG   90 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l-~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~   90 (162)
                      ...+.+++|+|+++++ ++++.++.|++|+..  +  .+....+..+.          .+.+++|+|+++.++ +++.++
T Consensus        31 ~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~--~--~~~~~~~~~~~----------~v~~~~~spdg~~l~~~~~~~~   96 (391)
T 1l0q_A           31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTA--T--NNVIATVPAGS----------SPQGVAVSPDGKQVYVTNMASS   96 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEEGGGTEEEEEETT--T--TEEEEEEECSS----------SEEEEEECTTSSEEEEEETTTT
T ss_pred             CCCcceEEECCCCCEEEEECCCCCeEEEEECC--C--CeEEEEEECCC----------CccceEECCCCCEEEEEECCCC
Confidence            3457899999999876 667789999996554  3  33333333222          599999999998664 566789


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcCCCCEE-EEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTF-ATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .|++||+.+++.+..+.. ...+..+ |+|+++++ ++++.++.|++||+++++.+..+..+. .+.+++|+||
T Consensus        97 ~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~d  168 (391)
T 1l0q_A           97 TLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPD  168 (391)
T ss_dssp             EEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTT
T ss_pred             EEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCC
Confidence            999999999888777764 4567888 99999977 678889999999999999888877654 5789999986

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.81  E-value=1.1e-17  Score=115.07  Aligned_cols=134  Identities=6%  Similarity=0.055  Sum_probs=104.4

Q ss_pred             cccEEEEEEeeCCCeEEE-EcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEE-EEecCCC
Q psy1859          13 KFQTRCIKCFPNKQGYVL-SSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF-ATGGSDG   90 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~-~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~d~   90 (162)
                      ...+.+++|+|+++++++ ++.++.|++|+..  +  .+....+..+.          .+.+++|+|+++.+ ++++.++
T Consensus        73 ~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~--~--~~~~~~~~~~~----------~~~~~~~s~dg~~l~~~~~~~~  138 (391)
T 1l0q_A           73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT--S--NTVAGTVKTGK----------SPLGLALSPDGKKLYVTNNGDK  138 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEETT--T--TEEEEEEECSS----------SEEEEEECTTSSEEEEEETTTT
T ss_pred             CCCccceEECCCCCEEEEEECCCCEEEEEECC--C--CeEEEEEeCCC----------CcceEEECCCCCEEEEEeCCCC
Confidence            347889999999998755 4567999996554  3  23333333222          58999999999866 7888899


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcCCCCEE-EEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTF-ATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .|++||+.+++.+..+..+ ..+..+ |+|+++++ ++++.++.|++||+++++.+..+. +...+.+++|+||
T Consensus       139 ~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~  210 (391)
T 1l0q_A          139 TVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPE  210 (391)
T ss_dssp             EEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTT
T ss_pred             EEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCC
Confidence            9999999998888777654 456788 99999987 577789999999999998887775 4567899999986

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.81  E-value=7.2e-19  Score=122.44  Aligned_cols=140  Identities=12%  Similarity=0.044  Sum_probs=109.3

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      ..+.+++|+|++..+++++.++.|++|+.+..+  ......  ...    ..+|...|.+++|+|++.++++++.|+.|+
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~--~~~~~~--~~~----~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~  194 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQ--TVRLSP--PEK----YKKKLGFVETISIPEHNELWVSQMQANAVH  194 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCC--EEEECC--CHH----HHTTCCEEEEEEEGGGTEEEEEEGGGTEEE
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCe--EeeecC--ccc----ccccCCceeEEEEcCCCEEEEEECCCCEEE
Confidence            334578999977778888888999996654322  221111  000    112555799999999999999999999999


Q ss_pred             EEeCCCccceeeeeecccceeEE-EcCCCCEEE-EecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          94 IWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFA-TGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +||+++++.+..+..+...+.++ |+|++++++ +++.|+.|++||+++++.+..+..+ ..+.+++|+||
T Consensus       195 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~  264 (433)
T 3bws_A          195 VFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKD  264 (433)
T ss_dssp             EEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTT
T ss_pred             EEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCC
Confidence            99999988888888888899999 999999885 4558999999999999988877654 46899999986

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.81  E-value=2.5e-18  Score=115.69  Aligned_cols=121  Identities=12%  Similarity=0.053  Sum_probs=85.8

Q ss_pred             cEEEEEEeeC----CCeEEEEc--------------------CCCcEEEEEecCCcccceeeeeeeeeeeccCcccceec
Q psy1859          15 QTRCIKCFPN----KQGYVLSS--------------------IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP   70 (162)
Q Consensus        15 ~~~~i~~~~~----~~~l~~~~--------------------~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (162)
                      .+++++++|+    ++.++.++                    .|+.|++|.+...   .+.+..+..|..         .
T Consensus       113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~d---G~~~~s~~~~~~---------~  180 (356)
T 2w18_A          113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAED---GGGKENQFLMPP---------E  180 (356)
T ss_dssp             EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTT---SCEEEEEEECCC---------S
T ss_pred             ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCC---CceeeeeccCCC---------c
Confidence            4566777777    66666544                    2677777666432   223333444443         6


Q ss_pred             eEEEEecC---CCCEEEEecCCCeEEEEeCCCccceeeeeecc---cceeEE-EcCCCCEE------------EEecCCC
Q psy1859          71 VNAISFHQ---EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD---TGITSL-FHQEYNTF------------ATGGSDG  131 (162)
Q Consensus        71 v~~~~~~p---~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~---~~v~~~-~~~~~~~l------------~~~~~d~  131 (162)
                      +..++|+|   ++.+|++++.|++|++||++++++++.+..+.   ..+.++ |+|+|.++            ++|+.|+
T Consensus       181 v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~  260 (356)
T 2w18_A          181 ETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVF  260 (356)
T ss_dssp             SCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCE
T ss_pred             eeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCc
Confidence            88889988   67999999999999999999999999987543   356677 99999876            5677899


Q ss_pred             eEEEEeCCCceeeeee
Q psy1859         132 YVNIWDGFNKKRLCQF  147 (162)
Q Consensus       132 ~i~iwd~~~~~~~~~~  147 (162)
                      +|++||..+++.+.++
T Consensus       261 tIklWd~~tgk~l~v~  276 (356)
T 2w18_A          261 QLIVINPKTTLSVGVM  276 (356)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCEEEEEE
Confidence            9999999999887665

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.80  E-value=1e-17  Score=116.71  Aligned_cols=135  Identities=12%  Similarity=0.027  Sum_probs=100.7

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCC---cEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEE-Eec
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEG---RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA-TGG   87 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~   87 (162)
                      ....+.+++|+|+|+.+++++.++   .+++|+.+..+  ..   .+..+.         ..+.+++|+|+|+.|+ +++
T Consensus       177 ~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~--~~---~l~~~~---------~~~~~~~~spdg~~la~~~~  242 (415)
T 2hqs_A          177 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VR---QVASFP---------RHNGAPAFSPDGSKLAFALS  242 (415)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EE---EEECCS---------SCEEEEEECTTSSEEEEEEC
T ss_pred             CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc--EE---EeecCC---------CcccCEEEcCCCCEEEEEEe
Confidence            456788999999999999998774   78885554322  22   222232         2689999999998777 666


Q ss_pred             CCC--eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecC-CC--eEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          88 SDG--YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS-DG--YVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        88 ~d~--~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      .++  .|++||+.+++. ..+..+...+..+ |+|||++|++++. ++  .|.+||+.+++. ..+..+...+.+++|+|
T Consensus       243 ~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~sp  320 (415)
T 2hqs_A          243 KTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSS  320 (415)
T ss_dssp             TTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECT
T ss_pred             cCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECC
Confidence            554  599999988765 5566677788899 9999998888775 44  788889987764 34555777899999999


Q ss_pred             C
Q psy1859         162 D  162 (162)
Q Consensus       162 d  162 (162)
                      |
T Consensus       321 d  321 (415)
T 2hqs_A          321 D  321 (415)
T ss_dssp             T
T ss_pred             C
Confidence            7

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.80  E-value=6.9e-18  Score=117.49  Aligned_cols=136  Identities=9%  Similarity=-0.031  Sum_probs=107.7

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEE-EEecCCC
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF-ATGGSDG   90 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~d~   90 (162)
                      ..+.+.+++|+|+++.+++++.++.+++|+.+.    .+....+..+.         ..+.+++|+|+++.+ ++++.++
T Consensus       168 ~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~----~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~  234 (433)
T 3bws_A          168 KLGFVETISIPEHNELWVSQMQANAVHVFDLKT----LAYKATVDLTG---------KWSKILLYDPIRDLVYCSNWISE  234 (433)
T ss_dssp             TCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT----CCEEEEEECSS---------SSEEEEEEETTTTEEEEEETTTT
T ss_pred             cCCceeEEEEcCCCEEEEEECCCCEEEEEECCC----ceEEEEEcCCC---------CCeeEEEEcCCCCEEEEEecCCC
Confidence            345778899999999999999999999966543    23333333333         369999999999776 5566899


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEec--------CCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGG--------SDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~--------~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      .|++||+++++.+..+..+ ..+..+ |+|+++++++++        .|+.|++||+++++.+..+ .|...+.+++|+|
T Consensus       235 ~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~  312 (433)
T 3bws_A          235 DISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGN  312 (433)
T ss_dssp             EEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECS
T ss_pred             cEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECC
Confidence            9999999998887777653 457888 999999999887        4889999999998877665 4566889999998


Q ss_pred             C
Q psy1859         162 D  162 (162)
Q Consensus       162 d  162 (162)
                      |
T Consensus       313 ~  313 (433)
T 3bws_A          313 T  313 (433)
T ss_dssp             S
T ss_pred             C
Confidence            6

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.78  E-value=1.8e-17  Score=115.38  Aligned_cols=137  Identities=10%  Similarity=-0.011  Sum_probs=103.7

Q ss_pred             cccccEEEEEEeeCCCeEEEEcC-CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      .....+.+++|+|++++|++++. ++...||.++...+...   .+..+.         ..+.+++|+|+|++|++++.+
T Consensus       264 ~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~---~l~~~~---------~~~~~~~~spdG~~l~~~~~~  331 (415)
T 2hqs_A          264 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ---RITWEG---------SQNQDADVSSDGKFMVMVSSN  331 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE---ECCCSS---------SEEEEEEECTTSSEEEEEEEC
T ss_pred             CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE---EEecCC---------CcccCeEECCCCCEEEEEECc
Confidence            34456788999999999888775 57667777776552211   112222         258899999999988887754


Q ss_pred             ---CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCC---eEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          90 ---GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDG---YVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        90 ---~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                         ..|++||+.+++.. .+..+. .+..+ |+|+|++|++++.++   .|++||+. +.....+..|.+.|.+++|+|-
T Consensus       332 ~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~  408 (415)
T 2hqs_A          332 GGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY  408 (415)
T ss_dssp             SSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCC
T ss_pred             CCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccc
Confidence               68999999987653 344443 78888 999999999988776   89999996 5557778889999999999983

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.76  E-value=1.3e-17  Score=110.12  Aligned_cols=136  Identities=10%  Similarity=-0.017  Sum_probs=103.4

Q ss_pred             cEEEEEEeeCCCeEE-EEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec-CCCeE
Q psy1859          15 QTRCIKCFPNKQGYV-LSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-SDGYV   92 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~-~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~v   92 (162)
                      .+..++|+|+++.++ ++..++.+.||.++....  .. ..+..+         ...+.+++|+|+++.++.++ .++.+
T Consensus       130 ~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~--~~-~~~~~~---------~~~~~~~~~s~dg~~l~~~~~~~~~~  197 (297)
T 2ojh_A          130 PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG--VE-TRLTHG---------EGRNDGPDYSPDGRWIYFNSSRTGQM  197 (297)
T ss_dssp             SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC--CE-EECCCS---------SSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             CccceEECCCCCEEEEEECCCCceEEEEEECCCC--cc-eEcccC---------CCccccceECCCCCEEEEEecCCCCc
Confidence            467889999999887 677889999998886542  21 122222         22689999999998777655 58899


Q ss_pred             EEEeCC-CccceeeeeecccceeEE-EcCCCCEEEEecCC-----------CeEEEEeCCCcee--eeeeccCCCceeEE
Q psy1859          93 NIWDGF-NKKRLCQFHRYDTGITSL-FHQEYNTFATGGSD-----------GYVNIWDGFNKKR--LCQFHRYDTGITSL  157 (162)
Q Consensus        93 ~~wd~~-~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d-----------~~i~iwd~~~~~~--~~~~~~~~~~v~~v  157 (162)
                      .+|++. .+.....+..+...+..+ |+|+|++|++++.+           +.|.+||+.+++.  +..+..|...+.++
T Consensus       198 ~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  277 (297)
T 2ojh_A          198 QIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSP  277 (297)
T ss_dssp             EEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSC
T ss_pred             cEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccc
Confidence            999886 455666676677778888 99999999888765           5699999988764  44444778889999


Q ss_pred             EecCC
Q psy1859         158 CFSYD  162 (162)
Q Consensus       158 ~~~pd  162 (162)
                      +|+||
T Consensus       278 ~~spd  282 (297)
T 2ojh_A          278 NWSPD  282 (297)
T ss_dssp             CBCTT
T ss_pred             eECCC
Confidence            99986

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.74  E-value=6.8e-17  Score=119.42  Aligned_cols=145  Identities=10%  Similarity=-0.031  Sum_probs=100.2

Q ss_pred             ccEEEEEEeeCCCeEEEEcC-CC-----cEEEEEecCCcccceeeeeeeeeee----------c---cCcccceeceEEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSI-EG-----RAAVEYLDTGPEMQKMKYAFKCHRI----------K---EDGIEKIYPVNAI   74 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~-~g-----~i~i~~~~~~~~~~~~~~~~~~~~~----------~---~~~~~~~~~v~~~   74 (162)
                      ..+..++|+|||++|++++. ++     .|.+|  +..++..........+..          .   .........+.++
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~--d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSY--DIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEE--ETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEE--ECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            34789999999999999987 77     67775  444322322222111110          0   0000000247899


Q ss_pred             EecCCCCEEEEecCCCeEEEEeCCCcc--ceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCC
Q psy1859          75 SFHQEYNTFATGGSDGYVNIWDGFNKK--RLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD  151 (162)
Q Consensus        75 ~~~p~~~~l~~~~~d~~v~~wd~~~~~--~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  151 (162)
                      +|+|+|+.|++++. +.|++||+.++.  ....+..+...+..+ |+|||+++++++ ++.|++||+.+++.......+.
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~  192 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGS  192 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCC
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCc
Confidence            99999999998876 999999998873  445566677788899 999999999887 4589999999887665544433


Q ss_pred             Cc----------------eeEEEecCC
Q psy1859         152 TG----------------ITSLCFSYD  162 (162)
Q Consensus       152 ~~----------------v~~v~~~pd  162 (162)
                      ..                +.+++|+||
T Consensus       193 ~~~~~g~~~~v~~~~~~~~~~~~~SpD  219 (741)
T 2ecf_A          193 TTIGNGIAEFVADEEMDRHTGYWWAPD  219 (741)
T ss_dssp             SSEEESCCCHHHHHHSCCCCSEEECTT
T ss_pred             cceeccccceeeeeccccccceEECCC
Confidence            32                478999997

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.72  E-value=3.6e-16  Score=105.43  Aligned_cols=139  Identities=10%  Similarity=0.015  Sum_probs=97.3

Q ss_pred             cccEEEEEEeeCCCeEEEEcCC-CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec-CCC
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIE-GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-SDG   90 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~   90 (162)
                      ...+.+++|+|+++++++++.+ +.+.+|+++...+..+....+....          .+..++|+|+++.+++++ .++
T Consensus        37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~s~dg~~l~~~~~~~~  106 (343)
T 1ri6_A           37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG----------SLTHISTDHQGQFVFVGSYNAG  106 (343)
T ss_dssp             SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS----------CCSEEEECTTSSEEEEEETTTT
T ss_pred             CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC----------CCcEEEEcCCCCEEEEEecCCC
Confidence            3456779999999988888776 8999988874432233333322221          478999999998766554 589


Q ss_pred             eEEEEeCC---CccceeeeeecccceeEE-EcCCCCEEEEec-CCCeEEEEeCCC-ceeee----eecc-CCCceeEEEe
Q psy1859          91 YVNIWDGF---NKKRLCQFHRYDTGITSL-FHQEYNTFATGG-SDGYVNIWDGFN-KKRLC----QFHR-YDTGITSLCF  159 (162)
Q Consensus        91 ~v~~wd~~---~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~iwd~~~-~~~~~----~~~~-~~~~v~~v~~  159 (162)
                      .|.+||+.   ..+....+.. ...+..+ |+|+++++++++ .++.|.+||+.+ ++...    .+.. ....+.+++|
T Consensus       107 ~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (343)
T 1ri6_A          107 NVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF  185 (343)
T ss_dssp             EEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEE
T ss_pred             eEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEE
Confidence            99999994   3334444432 3457778 999999888877 899999999987 54322    2222 3447888999


Q ss_pred             cCC
Q psy1859         160 SYD  162 (162)
Q Consensus       160 ~pd  162 (162)
                      +||
T Consensus       186 ~pd  188 (343)
T 1ri6_A          186 HPN  188 (343)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            986

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.71  E-value=9.3e-17  Score=118.33  Aligned_cols=135  Identities=7%  Similarity=-0.021  Sum_probs=97.4

Q ss_pred             EEEEEEeeCCCeEEEEcCC---------CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe
Q psy1859          16 TRCIKCFPNKQGYVLSSIE---------GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG   86 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~---------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~   86 (162)
                      +.+++|+|||+++++++.+         +.+.+|+.+...  ...+.....         |...+..++|||+|+.|+.+
T Consensus        63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~---------~~~~~~~~~~SPdG~~la~~  131 (723)
T 1xfd_A           63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD--PQSLDPPEV---------SNAKLQYAGWGPKGQQLIFI  131 (723)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC--CEECCCTTC---------CSCCCSBCCBCSSTTCEEEE
T ss_pred             cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCc--eEeccCCcc---------ccccccccEECCCCCEEEEE
Confidence            7889999999999998765         566675544322  221211111         22247889999999999888


Q ss_pred             cCCCeEEEEeCCCccceeeeeecccce------------------eEE-EcCCCCEEEEecCCC----------------
Q psy1859          87 GSDGYVNIWDGFNKKRLCQFHRYDTGI------------------TSL-FHQEYNTFATGGSDG----------------  131 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~~~~~~~~~~~~v------------------~~~-~~~~~~~l~~~~~d~----------------  131 (162)
                      +. +.|++||+.+++.......+...+                  ..+ |+|||++|++++.++                
T Consensus       132 ~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~  210 (723)
T 1xfd_A          132 FE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIY  210 (723)
T ss_dssp             ET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSS
T ss_pred             EC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCC
Confidence            75 799999999877655444333222                  678 999999999887543                


Q ss_pred             ------------------eEEEEeCCCceeeeeeccC------CCceeEEEecCC
Q psy1859         132 ------------------YVNIWDGFNKKRLCQFHRY------DTGITSLCFSYD  162 (162)
Q Consensus       132 ------------------~i~iwd~~~~~~~~~~~~~------~~~v~~v~~~pd  162 (162)
                                        .|++||+.+++....+..+      ...+.+++|+||
T Consensus       211 ~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpD  265 (723)
T 1xfd_A          211 PTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATS  265 (723)
T ss_dssp             CCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSS
T ss_pred             CcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCC
Confidence                              7999999888765555543      567899999997

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.70  E-value=4e-16  Score=102.95  Aligned_cols=136  Identities=12%  Similarity=0.042  Sum_probs=101.4

Q ss_pred             ccEEEEEEeeCCCeEEEEc--CCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEE-EecCCC
Q psy1859          14 FQTRCIKCFPNKQGYVLSS--IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA-TGGSDG   90 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~--~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~   90 (162)
                      ..+.+++|+|+++++++++  .++...||.++....  . ...+..+.          .+..++|+|+++.++ ++..++
T Consensus        85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~--~-~~~~~~~~----------~~~~~~~spdg~~l~~~~~~~~  151 (297)
T 2ojh_A           85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGG--T-PRLMTKNL----------PSYWHGWSPDGKSFTYCGIRDQ  151 (297)
T ss_dssp             CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCC--C-CEECCSSS----------SEEEEEECTTSSEEEEEEEETT
T ss_pred             ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCC--c-eEEeecCC----------CccceEECCCCCEEEEEECCCC
Confidence            4567799999999999988  446788888886542  2 11112111          478899999998776 778899


Q ss_pred             eEEEEeCCC-ccceeeeeecccceeEE-EcCCCCEEEEec-CCCeEEEEeCC-CceeeeeeccCCCceeEEEecCC
Q psy1859          91 YVNIWDGFN-KKRLCQFHRYDTGITSL-FHQEYNTFATGG-SDGYVNIWDGF-NKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        91 ~v~~wd~~~-~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~iwd~~-~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .+.+|++.. ......+..+...+..+ |+|+++++++++ .++.+++|++. .+..+..+..|...+.+++|+||
T Consensus       152 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~d  227 (297)
T 2ojh_A          152 VFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPS  227 (297)
T ss_dssp             EEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTT
T ss_pred             ceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCC
Confidence            999998643 23445555667788899 999999887765 58899999886 45556677778888999999986

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.68  E-value=1.7e-15  Score=115.96  Aligned_cols=132  Identities=14%  Similarity=0.016  Sum_probs=104.7

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEE-EEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAA-VEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      .+..++|+ +++.+++++.++.+. +  ++....  .. ..+..+.         ..+..++|+|+|+.|++++.++.|+
T Consensus       339 ~~~~~~~s-dg~~l~~~s~~~~l~~~--~d~~~~--~~-~~l~~~~---------~~~~~~~~SpDG~~la~~~~~~~v~  403 (1045)
T 1k32_A          339 RYVRRGGD-TKVAFIHGTREGDFLGI--YDYRTG--KA-EKFEENL---------GNVFAMGVDRNGKFAVVANDRFEIM  403 (1045)
T ss_dssp             EEEEECSS-SEEEEEEEETTEEEEEE--EETTTC--CE-EECCCCC---------CSEEEEEECTTSSEEEEEETTSEEE
T ss_pred             eEEeeeEc-CCCeEEEEECCCceEEE--EECCCC--Cc-eEecCCc---------cceeeeEECCCCCEEEEECCCCeEE
Confidence            67788999 999999888765554 5  554431  11 1222232         3689999999999999999999999


Q ss_pred             EEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCC----------eEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          94 IWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDG----------YVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~----------~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +||+.+++.......+...+..+ |+|||++|++++.++          .|++||+.+++ +..+..|...+.+++|+||
T Consensus       404 ~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spd  482 (1045)
T 1k32_A          404 TVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDAD  482 (1045)
T ss_dssp             EEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTT
T ss_pred             EEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCC
Confidence            99999988777776788888899 999999998887644          89999999887 6667778888999999997

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.68  E-value=2.3e-15  Score=108.15  Aligned_cols=128  Identities=12%  Similarity=0.012  Sum_probs=101.3

Q ss_pred             EEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeC--
Q psy1859          20 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDG--   97 (162)
Q Consensus        20 ~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~--   97 (162)
                      +++|++..+++++.++.|.+|+  ..+  .+.+..+....          .+..++|+|+++++++++.|+.|.+||+  
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D--~~t--~~~~~~i~~g~----------~~~~v~~spdg~~l~v~~~d~~V~v~D~~~  209 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVD--GDS--KKIVKVIDTGY----------AVHISRMSASGRYLLVIGRDARIDMIDLWA  209 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEE--TTT--CCEEEEEECST----------TEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             ccCCCCEEEEEEcCCCeEEEEE--CCC--ceEEEEEecCc----------ccceEEECCCCCEEEEECCCCeEEEEECcC
Confidence            4788888899999999999954  444  33343433211          3789999999999999999999999999  


Q ss_pred             CCccceeeeeecccceeEE-EcC----CCCEEEEec-CCCeEEEEeCCCceeeeeecc----------CCC-ceeEEEec
Q psy1859          98 FNKKRLCQFHRYDTGITSL-FHQ----EYNTFATGG-SDGYVNIWDGFNKKRLCQFHR----------YDT-GITSLCFS  160 (162)
Q Consensus        98 ~~~~~~~~~~~~~~~v~~~-~~~----~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~----------~~~-~v~~v~~~  160 (162)
                      .+++.+..+. ....+..+ |+|    +|+++++++ .+++|.+||..+++++.++..          |.. .+.++.++
T Consensus       210 ~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s  288 (543)
T 1nir_A          210 KEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS  288 (543)
T ss_dssp             SSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred             CCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEEC
Confidence            7788777776 45567888 999    999999988 589999999999998887754          222 68888888


Q ss_pred             CC
Q psy1859         161 YD  162 (162)
Q Consensus       161 pd  162 (162)
                      ||
T Consensus       289 ~~  290 (543)
T 1nir_A          289 HE  290 (543)
T ss_dssp             SS
T ss_pred             CC
Confidence            74

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.68  E-value=8.3e-17  Score=118.60  Aligned_cols=137  Identities=7%  Similarity=-0.009  Sum_probs=96.5

Q ss_pred             cccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC---
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD---   89 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d---   89 (162)
                      .....+++|+|+|+++++ +.||.+++|+.+  +  .+....+..+..      +...|.+++|||+|++|++++.+   
T Consensus        16 ~~~~~~~~~spdg~~~~~-~~dg~i~~~d~~--~--g~~~~~~~~~~~------~~~~v~~~~~SpDg~~l~~~~~~~~~   84 (723)
T 1xfd_A           16 KIHDPEAKWISDTEFIYR-EQKGTVRLWNVE--T--NTSTVLIEGKKI------ESLRAIRYEISPDREYALFSYNVEPI   84 (723)
T ss_dssp             CCCCCCCCBSSSSCBCCC-CSSSCEEEBCGG--G--CCCEEEECTTTT------TTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred             cccccccEEcCCCcEEEE-eCCCCEEEEECC--C--CcEEEEeccccc------cccccceEEECCCCCEEEEEecCccc
Confidence            344567899999997665 788999885444  3  222222222221      00138899999999999988764   


Q ss_pred             ------CeEEEEeCCCccceeeee---ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCce-----
Q psy1859          90 ------GYVNIWDGFNKKRLCQFH---RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGI-----  154 (162)
Q Consensus        90 ------~~v~~wd~~~~~~~~~~~---~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v-----  154 (162)
                            +.+++||+.+++. ..+.   .+...+..+ |||||++|+.++. +.|++||+.+++.......+...+     
T Consensus        85 ~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~  162 (723)
T 1xfd_A           85 YQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGL  162 (723)
T ss_dssp             SSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEE
T ss_pred             eeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcc
Confidence                  7889999998765 3332   333447788 9999999999876 799999999887766555443333     


Q ss_pred             -------------eEEEecCC
Q psy1859         155 -------------TSLCFSYD  162 (162)
Q Consensus       155 -------------~~v~~~pd  162 (162)
                                   .+++|+||
T Consensus       163 ~~~v~~ee~~~~~~~~~~SpD  183 (723)
T 1xfd_A          163 SDWLYEEEILKTHIAHWWSPD  183 (723)
T ss_dssp             CCHHHHHTTSSSSEEEEECTT
T ss_pred             cceeEEEEeccCcceEEECCC
Confidence                         78999997

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.67  E-value=1.2e-14  Score=98.50  Aligned_cols=144  Identities=14%  Similarity=0.073  Sum_probs=101.5

Q ss_pred             cEEEEEEeeCCCeEEE-EcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec--CCCe
Q psy1859          15 QTRCIKCFPNKQGYVL-SSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG--SDGY   91 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~-~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~--~d~~   91 (162)
                      ....++++|+++++++ ...++.+.+|  |..+  .+....+..+............+.+++|+|+++.+++++  .++.
T Consensus        90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~--d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  165 (353)
T 3vgz_A           90 KPFGATINNTTQTLWFGNTVNSAVTAI--DAKT--GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESV  165 (353)
T ss_dssp             CCCSEEEETTTTEEEEEETTTTEEEEE--ETTT--CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCE
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEE--eCCC--CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCce
Confidence            3456889999986555 4556888885  4444  223233222211000000011268899999998766655  5789


Q ss_pred             EEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeecc----CCCceeEEEecCC
Q psy1859          92 VNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR----YDTGITSLCFSYD  162 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~v~~~pd  162 (162)
                      |.+||..+++.+..+..+...+..+ |+|+++++++++.++.|.+||+.+++.+..+..    +...+.+++|+||
T Consensus       166 i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  241 (353)
T 3vgz_A          166 IWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTA  241 (353)
T ss_dssp             EEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETT
T ss_pred             EEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCC
Confidence            9999999988887776555667788 999999999999999999999999988777653    4556788999986

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.67  E-value=1.5e-14  Score=98.61  Aligned_cols=140  Identities=9%  Similarity=0.001  Sum_probs=93.3

Q ss_pred             ccEEEEEEeeCCCeEEEE-cCCCcEEEEEecCCcc----c-ceee---eeeeeeeeccCcccceeceEEEEecCCCCEEE
Q psy1859          14 FQTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPE----M-QKMK---YAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA   84 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~-~~~g~i~i~~~~~~~~----~-~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~   84 (162)
                      .++.+++|+|++++++++ ..++.+.+|+++....    . ....   ......        +...+..++|+|++++++
T Consensus       155 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~spdg~~l~  226 (361)
T 3scy_A          155 PHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA--------PGSGPRHLIFNSDGKFAY  226 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC--------TTCCEEEEEECTTSSEEE
T ss_pred             CcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecC--------CCCCCeEEEEcCCCCEEE
Confidence            355789999999976655 4578899988876542    1 0000   011111        112477899999998776


Q ss_pred             Eec-CCCeEEEEeCCCccc--eeeee---ecccceeEE-EcCCCCEEEEecC--CCeEEEEeCC--Cce--eeeeeccCC
Q psy1859          85 TGG-SDGYVNIWDGFNKKR--LCQFH---RYDTGITSL-FHQEYNTFATGGS--DGYVNIWDGF--NKK--RLCQFHRYD  151 (162)
Q Consensus        85 ~~~-~d~~v~~wd~~~~~~--~~~~~---~~~~~v~~~-~~~~~~~l~~~~~--d~~i~iwd~~--~~~--~~~~~~~~~  151 (162)
                      +++ .++.|.+|++.+++.  +..+.   .+......+ |+|||++|+++..  ++.|.+|++.  +++  .+..+.. .
T Consensus       227 v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g  305 (361)
T 3scy_A          227 LINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G  305 (361)
T ss_dssp             EEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S
T ss_pred             EEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C
Confidence            655 689999999986643  22222   222345688 9999999877665  4899999985  344  3444444 4


Q ss_pred             CceeEEEecCC
Q psy1859         152 TGITSLCFSYD  162 (162)
Q Consensus       152 ~~v~~v~~~pd  162 (162)
                      ..+.+++|+||
T Consensus       306 ~~~~~~~~spd  316 (361)
T 3scy_A          306 IHPRNFIITPN  316 (361)
T ss_dssp             SCCCEEEECTT
T ss_pred             CCCceEEECCC
Confidence            57889999987

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.65  E-value=2.6e-14  Score=96.78  Aligned_cols=137  Identities=13%  Similarity=0.045  Sum_probs=101.1

Q ss_pred             ccccEEEEEEeeCCCeEEEEcC-------CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCC-EE
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSI-------EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN-TF   83 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~-------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l   83 (162)
                      +......++++|+++++++++.       ++.+.+  ||..+  .+....+....          .+..++|+|+++ ++
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~--~d~~~--~~~~~~~~~~~----------~~~~~~~s~dg~~l~  104 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYR--LDPVT--LEVTQAIHNDL----------KPFGATINNTTQTLW  104 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEE--ECTTT--CCEEEEEEESS----------CCCSEEEETTTTEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEE--EcCCC--CeEEEEEecCC----------CcceEEECCCCCEEE
Confidence            3455678999999998887764       345666  66554  33333333221          367899999997 55


Q ss_pred             EEecCCCeEEEEeCCCccceeeeeeccc---------ceeEE-EcCCCCEEEEec--CCCeEEEEeCCCceeeeeeccCC
Q psy1859          84 ATGGSDGYVNIWDGFNKKRLCQFHRYDT---------GITSL-FHQEYNTFATGG--SDGYVNIWDGFNKKRLCQFHRYD  151 (162)
Q Consensus        84 ~~~~~d~~v~~wd~~~~~~~~~~~~~~~---------~v~~~-~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~  151 (162)
                      ++...++.|.+||..+++.+..+..+..         .+..+ |+|+++++++++  .++.|.+||..+++.+..+..+.
T Consensus       105 v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  184 (353)
T 3vgz_A          105 FGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTG  184 (353)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCC
T ss_pred             EEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCC
Confidence            5666789999999999888777765332         25778 999999877776  47899999999999888877566


Q ss_pred             CceeEEEecCC
Q psy1859         152 TGITSLCFSYD  162 (162)
Q Consensus       152 ~~v~~v~~~pd  162 (162)
                      ..+.+++|+||
T Consensus       185 ~~~~~~~~s~d  195 (353)
T 3vgz_A          185 KMSTGLALDSE  195 (353)
T ss_dssp             TTCCCCEEETT
T ss_pred             CccceEEECCC
Confidence            66888999886

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.65  E-value=2.9e-16  Score=115.81  Aligned_cols=132  Identities=12%  Similarity=0.019  Sum_probs=93.6

Q ss_pred             EEEEEEeeCCCeEEEEcC---------CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe
Q psy1859          16 TRCIKCFPNKQGYVLSSI---------EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG   86 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~---------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~   86 (162)
                      +.+++|||||++|++++.         ++.+.+|+.+..+  ......+.            ..+..++|||+|+.|+.+
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~--~~~~~~l~------------~~~~~~~~SPDG~~la~~  127 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGE--FVRGNELP------------RPIQYLCWSPVGSKLAYV  127 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE--ECCSSCCC------------SSBCCEEECSSTTCEEEE
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCc--cccceecC------------cccccceECCCCCEEEEE
Confidence            778999999999998876         5777775544322  20001111            147889999999998888


Q ss_pred             cCCCeEEEEeCCCccceeeee-ecccce-----------------eEE-EcCCCCEEEEecCCC----------------
Q psy1859          87 GSDGYVNIWDGFNKKRLCQFH-RYDTGI-----------------TSL-FHQEYNTFATGGSDG----------------  131 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~~~~~~~-~~~~~v-----------------~~~-~~~~~~~l~~~~~d~----------------  131 (162)
                      . ++.|++||+.+++...... ++...+                 ..+ |+|||++|++++.|.                
T Consensus       128 ~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~  206 (719)
T 1z68_A          128 Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQY  206 (719)
T ss_dssp             E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSS
T ss_pred             E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCC
Confidence            5 7899999998876543321 221111                 467 999999999987552                


Q ss_pred             ------------------eEEEEeCCCceee--------eeeccCCCceeEEEecCC
Q psy1859         132 ------------------YVNIWDGFNKKRL--------CQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       132 ------------------~i~iwd~~~~~~~--------~~~~~~~~~v~~v~~~pd  162 (162)
                                        .|++||+.+++..        ..+..|...+.+++|+||
T Consensus       207 ~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD  263 (719)
T 1z68_A          207 PRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD  263 (719)
T ss_dssp             CEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS
T ss_pred             ccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCC
Confidence                              7899999887642        123357778999999997

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.65  E-value=3.4e-14  Score=102.10  Aligned_cols=134  Identities=9%  Similarity=-0.026  Sum_probs=101.5

Q ss_pred             EEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecC----CCCEEEEec-CCC
Q psy1859          16 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ----EYNTFATGG-SDG   90 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p----~~~~l~~~~-~d~   90 (162)
                      +..++++|+++++++++.++.|.+|+.+..+  .+.+..+....          .+..++|+|    +++++++++ .++
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t--~~~~~~i~~g~----------~p~~va~sp~~~~dg~~l~v~~~~~~  248 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKE--PTKVAEIKIGI----------EARSVESSKFKGYEDRYTIAGAYWPP  248 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSS--CEEEEEEECCS----------EEEEEEECCSTTCTTTEEEEEEEESS
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCC--CcEEEEEecCC----------CcceEEeCCCcCCCCCEEEEEEccCC
Confidence            6789999999999999999999997663233  33444443222          478999999    999888887 589


Q ss_pred             eEEEEeCCCccceeeeeec-----------ccceeEE-EcCCCC-EEEEecCCCeEEEEeCCCceeee--eeccCCCcee
Q psy1859          91 YVNIWDGFNKKRLCQFHRY-----------DTGITSL-FHQEYN-TFATGGSDGYVNIWDGFNKKRLC--QFHRYDTGIT  155 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~-----------~~~v~~~-~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~v~  155 (162)
                      .|.+||..+++++..+...           ...+..+ ++|++. ++++...++.|.+||+.+.+.+.  .+ .+...+.
T Consensus       249 ~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~  327 (543)
T 1nir_A          249 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLH  327 (543)
T ss_dssp             EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCC
T ss_pred             eEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCcc
Confidence            9999999998888877542           2257788 999766 45666788999999998765433  33 3556788


Q ss_pred             EEEecCC
Q psy1859         156 SLCFSYD  162 (162)
Q Consensus       156 ~v~~~pd  162 (162)
                      ++.|+||
T Consensus       328 ~~~~spd  334 (543)
T 1nir_A          328 DGGWDSS  334 (543)
T ss_dssp             CEEECTT
T ss_pred             CceECCC
Confidence            8999886

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.64  E-value=5.4e-14  Score=95.37  Aligned_cols=139  Identities=6%  Similarity=-0.030  Sum_probs=93.0

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEE-EEecCCCeEE
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF-ATGGSDGYVN   93 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~d~~v~   93 (162)
                      ++.+++|+|+++.+++...++.+.+|+++... .......+.....        ..+..++|+|+|+++ ++...++.+.
T Consensus       142 ~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~g--------~~p~~~~~spdg~~l~v~~~~~~~v~  212 (347)
T 3hfq_A          142 HIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG-QLSEQSVLTMEAG--------FGPRHLVFSPDGQYAFLAGELSSQIA  212 (347)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEEEECTTS-CEEEEEEEECCTT--------CCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CceEEEECCCCcEEEEeCCCCEEEEEEECCCC-cEEEeeeEEcCCC--------CCCceEEECCCCCEEEEEeCCCCEEE
Confidence            47789999999966666678889997776321 1121111111111        146789999999854 4567789999


Q ss_pred             EEeCCC--ccc--eeeeeecc------cceeEE-EcCCCCEEEE-ecCCCeEEEEeCCC---ceeeeeeccCCCceeEEE
Q psy1859          94 IWDGFN--KKR--LCQFHRYD------TGITSL-FHQEYNTFAT-GGSDGYVNIWDGFN---KKRLCQFHRYDTGITSLC  158 (162)
Q Consensus        94 ~wd~~~--~~~--~~~~~~~~------~~v~~~-~~~~~~~l~~-~~~d~~i~iwd~~~---~~~~~~~~~~~~~v~~v~  158 (162)
                      +|++..  ++.  +..+....      ..+..+ |+|+|++|++ ...++.|.+|++..   .+.+..+..+...+.+++
T Consensus       213 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~  292 (347)
T 3hfq_A          213 SLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFD  292 (347)
T ss_dssp             EEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEE
T ss_pred             EEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEE
Confidence            999874  332  22222211      346778 9999998754 55689999999972   245555666666789999


Q ss_pred             ecCC
Q psy1859         159 FSYD  162 (162)
Q Consensus       159 ~~pd  162 (162)
                      |+||
T Consensus       293 ~spd  296 (347)
T 3hfq_A          293 LDPT  296 (347)
T ss_dssp             ECTT
T ss_pred             ECCC
Confidence            9997

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.64  E-value=5.7e-14  Score=95.79  Aligned_cols=139  Identities=9%  Similarity=-0.036  Sum_probs=93.7

Q ss_pred             cccEEEEEEeeCCCeEEEEc-CCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC--C
Q psy1859          13 KFQTRCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS--D   89 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--d   89 (162)
                      ......++|+|+++++++++ .++.|.+|+++...  ......+.....      +......++|+|++++|+++..  +
T Consensus       210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~--~~~~~~~~~~~~------~~~~~~~i~~spdg~~l~v~~~~~~  281 (361)
T 3scy_A          210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM--LDEIQTVAADTV------NAQGSGDIHLSPDGKYLYASNRLKA  281 (361)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE--EEEEEEEESCSS------CCCCEEEEEECTTSSEEEEEECSSS
T ss_pred             CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc--eEEeEEEecCCC------CCCCcccEEECCCCCEEEEECCCCC
Confidence            34567899999999877766 68999998776322  222222211111      1124679999999988766554  5


Q ss_pred             CeEEEEeCC--Ccc--ceeeeeecccceeEE-EcCCCCEEEEec-CCCeEEEE--eCCCceeeeee-ccCCCceeEEEec
Q psy1859          90 GYVNIWDGF--NKK--RLCQFHRYDTGITSL-FHQEYNTFATGG-SDGYVNIW--DGFNKKRLCQF-HRYDTGITSLCFS  160 (162)
Q Consensus        90 ~~v~~wd~~--~~~--~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~iw--d~~~~~~~~~~-~~~~~~v~~v~~~  160 (162)
                      +.|.+|++.  +++  .+..+.. ...+..+ |+|+|++|++++ .++.|.+|  |..+++..... ..+...+.||.|.
T Consensus       282 ~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          282 DGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             CEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            899999986  343  3334443 4567888 999999888887 67899995  55567654433 2244578999986

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.63  E-value=2.6e-15  Score=111.02  Aligned_cols=133  Identities=8%  Similarity=-0.051  Sum_probs=95.2

Q ss_pred             EEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEE
Q psy1859          16 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW   95 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~w   95 (162)
                      +.+++|+|||++|++++. +.+.+|+.+...  ......+..+.         ..+..++|+|+|+.|+.++ ++.|++|
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~--~~~~~~l~~~~---------~~~~~~~~SPDG~~la~~~-~~~i~~~  177 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEG--KAAVRQLTHGE---------GFATDAKLSPKGGFVSFIR-GRNLWVI  177 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCS--TTSCCBCCCSS---------SCEEEEEECTTSSEEEEEE-TTEEEEE
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCC--cceEEEcccCC---------cccccccCCCCCCEEEEEe-CCcEEEE
Confidence            577899999999999876 888886554320  00122222232         2689999999999998887 4689999


Q ss_pred             eCCCccceeeeeecccc----------------eeEE-EcCCCCEEEEecCCC---------------------------
Q psy1859          96 DGFNKKRLCQFHRYDTG----------------ITSL-FHQEYNTFATGGSDG---------------------------  131 (162)
Q Consensus        96 d~~~~~~~~~~~~~~~~----------------v~~~-~~~~~~~l~~~~~d~---------------------------  131 (162)
                      |+.+++.......+...                +..+ |+|||++|++++.|+                           
T Consensus       178 d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g  257 (741)
T 2ecf_A          178 DLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAG  257 (741)
T ss_dssp             ETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTT
T ss_pred             ecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCC
Confidence            99987655443332221                3667 999999999987665                           


Q ss_pred             ------eEEEEeCCC-ceeeeeec--cCCCceeEEEecCC
Q psy1859         132 ------YVNIWDGFN-KKRLCQFH--RYDTGITSLCFSYD  162 (162)
Q Consensus       132 ------~i~iwd~~~-~~~~~~~~--~~~~~v~~v~~~pd  162 (162)
                            .|.+||+.+ ++......  .|...+.+++| ||
T Consensus       258 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pD  296 (741)
T 2ecf_A          258 DANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RD  296 (741)
T ss_dssp             SCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EE
T ss_pred             CCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CC
Confidence                  889999988 76544332  46778899999 86

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.62  E-value=6.6e-15  Score=112.69  Aligned_cols=132  Identities=12%  Similarity=-0.030  Sum_probs=103.2

Q ss_pred             cEEEEEEe-eCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          15 QTRCIKCF-PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        15 ~~~~i~~~-~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      .+..++|+ |+|+.+++++ ++.+.+|  +.......   .+..+..        ..+..++|+ +++.++.++.+..+.
T Consensus       297 ~v~~~~~S~pdG~~la~~~-~~~i~~~--~~~~~~~~---~~~~~~~--------~~~~~~~~s-dg~~l~~~s~~~~l~  361 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS-RGQAFIQ--DVSGTYVL---KVPEPLR--------IRYVRRGGD-TKVAFIHGTREGDFL  361 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE-TTEEEEE--CTTSSBEE---ECSCCSC--------EEEEEECSS-SEEEEEEEETTEEEE
T ss_pred             ccceeeecCCCCCEEEEEE-cCEEEEE--cCCCCceE---EccCCCc--------ceEEeeeEc-CCCeEEEEECCCceE
Confidence            57789999 9999998887 6777774  44331111   1222211        158899999 998888888888898


Q ss_pred             -EEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          94 -IWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        94 -~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                       +||+..++... +..+...+..+ |+|||++|++++.++.|++||+.+++....+..|...+.+++|+||
T Consensus       362 ~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpD  431 (1045)
T 1k32_A          362 GIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDN  431 (1045)
T ss_dssp             EEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTT
T ss_pred             EEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCC
Confidence             99998765433 33666788889 9999999999999999999999999887777788889999999997

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.62  E-value=5.4e-15  Score=108.85  Aligned_cols=132  Identities=12%  Similarity=-0.047  Sum_probs=94.6

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      ..+.+++|+|+ +.++.+ .++.+.+|+.+...  ..   .+..+.         ..+.+++|+|+|+.|+.+ .++.|+
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~--~~---~l~~~~---------~~~~~~~~SpdG~~la~~-~~~~i~  144 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARK--VT---YLFDTN---------EETASLDFSPVGDRVAYV-RNHNLY  144 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTE--EE---EEECCT---------TCCTTCEECTTSSEEEEE-ETTEEE
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCc--eE---EccCCc---------ccccCCcCCCCCCEEEEE-ECCeEE
Confidence            35789999999 666665 35888886554321  21   112221         257889999999998885 689999


Q ss_pred             EEeCCC-----ccceeeeeecccc--------------eeEE-EcCCCCEEEEec-------------------------
Q psy1859          94 IWDGFN-----KKRLCQFHRYDTG--------------ITSL-FHQEYNTFATGG-------------------------  128 (162)
Q Consensus        94 ~wd~~~-----~~~~~~~~~~~~~--------------v~~~-~~~~~~~l~~~~-------------------------  128 (162)
                      +||+.+     ++...........              +..+ |+|||++|++++                         
T Consensus       145 v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~  224 (706)
T 2z3z_A          145 IARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLY  224 (706)
T ss_dssp             EEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEEC
T ss_pred             EEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEee
Confidence            999998     7655443333232              4678 999999999987                         


Q ss_pred             --------CCCeEEEEeCCCceeeeeec--cCCCceeEEEecCC
Q psy1859         129 --------SDGYVNIWDGFNKKRLCQFH--RYDTGITSLCFSYD  162 (162)
Q Consensus       129 --------~d~~i~iwd~~~~~~~~~~~--~~~~~v~~v~~~pd  162 (162)
                              .+..|++||+.+++......  .|...+.+++|+||
T Consensus       225 y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd  268 (706)
T 2z3z_A          225 YPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPD  268 (706)
T ss_dssp             CCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTT
T ss_pred             CCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECC
Confidence                    44689999999887654432  46678999999997

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.61  E-value=6.3e-14  Score=95.08  Aligned_cols=136  Identities=10%  Similarity=0.011  Sum_probs=89.7

Q ss_pred             cEEEEEEeeCCCeEEEEcC---CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec-CCC
Q psy1859          15 QTRCIKCFPNKQGYVLSSI---EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-SDG   90 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~   90 (162)
                      ....++|+|+++ +++++.   ++.|.+|+++...  .+.+..+..+..         .+..++|+|++++|++++ .++
T Consensus        41 ~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~--~~~~~~~~~~~~---------~p~~~a~spdg~~l~~~~~~~~  108 (347)
T 3hfq_A           41 NPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT--AHKLNTVVAPGT---------PPAYVAVDEARQLVYSANYHKG  108 (347)
T ss_dssp             CCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE--EEEEEEEEEESC---------CCSEEEEETTTTEEEEEETTTT
T ss_pred             CcceEEEccCCe-EEEEEecCCCceEEEEEecCCc--EEEeeeeecCCC---------CCEEEEECCCCCEEEEEeCCCC
Confidence            345689999999 555543   5788887775432  333333222222         578999999998777776 789


Q ss_pred             eEEEEeCCC-c--cceeeeeec---------ccceeEE-EcCCCCEEEEecCCCeEEEEeCC-Cceee--eeeccC-CCc
Q psy1859          91 YVNIWDGFN-K--KRLCQFHRY---------DTGITSL-FHQEYNTFATGGSDGYVNIWDGF-NKKRL--CQFHRY-DTG  153 (162)
Q Consensus        91 ~v~~wd~~~-~--~~~~~~~~~---------~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~-~~~~~--~~~~~~-~~~  153 (162)
                      .+.+|++.. +  +.+..+...         ...+..+ |+|+|+++++...++.|.+|++. +++..  ..+..+ ...
T Consensus       109 ~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~  188 (347)
T 3hfq_A          109 TAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFG  188 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCC
T ss_pred             EEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCC
Confidence            999999963 2  223332211         1236778 99999976777778999999998 45432  222222 336


Q ss_pred             eeEEEecCC
Q psy1859         154 ITSLCFSYD  162 (162)
Q Consensus       154 v~~v~~~pd  162 (162)
                      +..++|+||
T Consensus       189 p~~~~~spd  197 (347)
T 3hfq_A          189 PRHLVFSPD  197 (347)
T ss_dssp             EEEEEECTT
T ss_pred             CceEEECCC
Confidence            788999987

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.61  E-value=5.2e-15  Score=108.91  Aligned_cols=138  Identities=11%  Similarity=0.077  Sum_probs=95.7

Q ss_pred             EEEEEEeeCCCeEEEEcCC-------------------------------CcEEEEEecCCcccceeeeeeeeeeeccCc
Q psy1859          16 TRCIKCFPNKQGYVLSSIE-------------------------------GRAAVEYLDTGPEMQKMKYAFKCHRIKEDG   64 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~-------------------------------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~   64 (162)
                      +.+++|+|||++|++++.|                               +...||.||..++.........        
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~--------  254 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE--------  254 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS--------
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC--------
Confidence            4789999999999998722                               3334444555442222221101        


Q ss_pred             ccceeceEEEEecCCCCEEEEecCCC-----eEEEEeCCCccceeeee-e-ccc---ceeEE-EcC--CCCEEEEecCCC
Q psy1859          65 IEKIYPVNAISFHQEYNTFATGGSDG-----YVNIWDGFNKKRLCQFH-R-YDT---GITSL-FHQ--EYNTFATGGSDG  131 (162)
Q Consensus        65 ~~~~~~v~~~~~~p~~~~l~~~~~d~-----~v~~wd~~~~~~~~~~~-~-~~~---~v~~~-~~~--~~~~l~~~~~d~  131 (162)
                       .|...+..++|+|+++.|++++.++     .|++||+.+++....+. . ...   .+..+ |+|  +|++++++..|+
T Consensus       255 -~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g  333 (706)
T 2z3z_A          255 -PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG  333 (706)
T ss_dssp             -CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred             -CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence             1333689999999999888877665     89999999884333332 2 222   23567 999  999999999999


Q ss_pred             eEEEEeCC-CceeeeeeccCCCceeE-EEecCC
Q psy1859         132 YVNIWDGF-NKKRLCQFHRYDTGITS-LCFSYD  162 (162)
Q Consensus       132 ~i~iwd~~-~~~~~~~~~~~~~~v~~-v~~~pd  162 (162)
                      .+++|++. +++.+..+..+...+.+ ++|+||
T Consensus       334 ~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spd  366 (706)
T 2z3z_A          334 WNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPK  366 (706)
T ss_dssp             SCEEEEEETTSCEEEECCCSSSCEEEEEEECTT
T ss_pred             ccEEEEEECCCCEEEecCCCCeEEEeeeEEcCC
Confidence            99999875 56667777777777877 799986

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.61  E-value=1.7e-13  Score=92.38  Aligned_cols=144  Identities=7%  Similarity=0.006  Sum_probs=93.4

Q ss_pred             ccEEEEEEeeCCCeEEEE-cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEE-EecCCCe
Q psy1859          14 FQTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA-TGGSDGY   91 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~~   91 (162)
                      ..+..++|+|++++++++ ..++.+.+|+++...+............   .+......+..++|+|+++.++ +...++.
T Consensus       178 ~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~  254 (343)
T 1ri6_A          178 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP---ENFSDTRWAADIHITPDGRHLYACDRTASL  254 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSC---TTCCSCCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccC---ccccccCCccceEECCCCCEEEEEecCCCE
Confidence            356789999999977655 5789999988765332122111111100   0001122467899999997666 5568999


Q ss_pred             EEEEeCCC----ccceeeeeecccceeEE-EcCCCCEEEEec-CCCeEEEE--eCCCcee--eeeeccCCCceeEEEecC
Q psy1859          92 VNIWDGFN----KKRLCQFHRYDTGITSL-FHQEYNTFATGG-SDGYVNIW--DGFNKKR--LCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        92 v~~wd~~~----~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~iw--d~~~~~~--~~~~~~~~~~v~~v~~~p  161 (162)
                      |.+||+..    .+.+..+..+.. +..+ |+|+|+++++++ .++.|.+|  |..+++.  +..+.. .....+++|.|
T Consensus       255 i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~  332 (343)
T 1ri6_A          255 ITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNA  332 (343)
T ss_dssp             EEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEE
T ss_pred             EEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEc
Confidence            99999983    234444444333 7788 999999888887 67999999  5556643  444443 24567788876


Q ss_pred             C
Q psy1859         162 D  162 (162)
Q Consensus       162 d  162 (162)
                      +
T Consensus       333 ~  333 (343)
T 1ri6_A          333 H  333 (343)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.61  E-value=1.1e-13  Score=93.07  Aligned_cols=128  Identities=5%  Similarity=-0.067  Sum_probs=90.0

Q ss_pred             EEeeCCCe-EEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe-cCCCeEEEEeC
Q psy1859          20 KCFPNKQG-YVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG-GSDGYVNIWDG   97 (162)
Q Consensus        20 ~~~~~~~~-l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d~~v~~wd~   97 (162)
                      .|.+++++ +++.+.++.|.+|+.+  +  .+....+..+..         .+ .++|+|+++.++++ ..++.|.+||+
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~--~--~~~~~~~~~~~~---------~~-~~~~s~dg~~l~~~~~~~~~i~~~d~   69 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTD--T--LEILNQITLGYD---------FV-DTAITSDCSNVVVTSDFCQTLVQIET   69 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETT--T--CCEEEEEECCCC---------EE-EEEECSSSCEEEEEESTTCEEEEEEC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCc--c--cceeeeEEccCC---------cc-eEEEcCCCCEEEEEeCCCCeEEEEEC
Confidence            34555444 6777888999995544  3  222222222221         35 99999999855555 45899999999


Q ss_pred             CCccc-eeeeeecccceeEE-EcCCCCEEEEecCCC---eEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          98 FNKKR-LCQFHRYDTGITSL-FHQEYNTFATGGSDG---YVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        98 ~~~~~-~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .+++. ...+..+..+...+ |+|+|++++++..++   .|.+||+.+++.+..+..+ ..+.+++|+||
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spd  138 (331)
T 3u4y_A           70 QLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPN  138 (331)
T ss_dssp             SSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTT
T ss_pred             CCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCC
Confidence            99887 66666665555548 999999999665553   8999999999988877643 45789999997

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.60  E-value=1.2e-13  Score=92.89  Aligned_cols=132  Identities=11%  Similarity=-0.026  Sum_probs=88.6

Q ss_pred             EEEEeeCCCeEEEEcC-CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC---eEE
Q psy1859          18 CIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG---YVN   93 (162)
Q Consensus        18 ~i~~~~~~~~l~~~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~---~v~   93 (162)
                      .++++|+++++++++. ++.+.+|+.+...  . ....+..+..         +..+++|+|++++++++..++   .|.
T Consensus        44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~--~-~~~~~~~~~~---------~~~~~~~s~dg~~l~~~~~~~~~~~i~  111 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQTLVQIETQLEP--P-KVVAIQEGQS---------SMADVDITPDDQFAVTVTGLNHPFNMQ  111 (331)
T ss_dssp             EEEECSSSCEEEEEESTTCEEEEEECSSSS--C-EEEEEEECSS---------CCCCEEECTTSSEEEECCCSSSSCEEE
T ss_pred             eEEEcCCCCEEEEEeCCCCeEEEEECCCCc--e-eEEecccCCC---------CccceEECCCCCEEEEecCCCCcccEE
Confidence            8999999997766655 7778775443322  2 0222222221         344499999999888655553   999


Q ss_pred             EEeCCCccceeeeeecccceeEE-EcCCCCEEEEe-cCCCe-EEEEeCCCceee----eeeccCCCceeEEEecCC
Q psy1859          94 IWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATG-GSDGY-VNIWDGFNKKRL----CQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~-~~d~~-i~iwd~~~~~~~----~~~~~~~~~v~~v~~~pd  162 (162)
                      +||+.+++.+..+.. ......+ |+|+|++++++ ..++. |.+|++.....+    .........+.+++|+||
T Consensus       112 v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spd  186 (331)
T 3u4y_A          112 SYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPD  186 (331)
T ss_dssp             EEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTT
T ss_pred             EEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCC
Confidence            999999888777654 3445788 99999866555 45577 999998753322    111233456789999986

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.59  E-value=1.8e-14  Score=104.06  Aligned_cols=128  Identities=13%  Similarity=-0.033  Sum_probs=94.2

Q ss_pred             EEEEEeeCCCeE-EEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC----Ce
Q psy1859          17 RCIKCFPNKQGY-VLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD----GY   91 (162)
Q Consensus        17 ~~i~~~~~~~~l-~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d----~~   91 (162)
                      ...+|+|+++.+ ++.+.++.+.+|+.+...  .+.+   ..+           +..+++|+|+|+.+++++.+    ..
T Consensus       113 ~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~--~~~l---~~~-----------~~~~~~~spDG~~la~~~~~~~~~~~  176 (582)
T 3o4h_A          113 RILSGVDTGEAVVFTGATEDRVALYALDGGG--LREL---ARL-----------PGFGFVSDIRGDLIAGLGFFGGGRVS  176 (582)
T ss_dssp             EEEEEEECSSCEEEEEECSSCEEEEEEETTE--EEEE---EEE-----------SSCEEEEEEETTEEEEEEEEETTEEE
T ss_pred             eeeeeCCCCCeEEEEecCCCCceEEEccCCc--EEEe---ecC-----------CCceEEECCCCCEEEEEEEcCCCCeE
Confidence            467899988643 333444555587655322  2221   111           12689999999999987776    78


Q ss_pred             EEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCC--eEEEEeCCCceeeeeeccCCCceeEEE--------ec
Q psy1859          92 VNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDG--YVNIWDGFNKKRLCQFHRYDTGITSLC--------FS  160 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~v~--------~~  160 (162)
                      |++||+.+++.. .+..+...+..+ |+|||++|+++..++  .|++||+.+++.. .+..|...+.+++        |+
T Consensus       177 i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s  254 (582)
T 3o4h_A          177 LFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYL  254 (582)
T ss_dssp             EEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEEC
T ss_pred             EEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEc
Confidence            999999887654 556677778888 999999999888888  8999999988877 6777777777777        99


Q ss_pred             CC
Q psy1859         161 YD  162 (162)
Q Consensus       161 pd  162 (162)
                      ||
T Consensus       255 pd  256 (582)
T 3o4h_A          255 PD  256 (582)
T ss_dssp             TT
T ss_pred             CC
Confidence            87

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.58  E-value=1.3e-14  Score=107.13  Aligned_cols=131  Identities=10%  Similarity=0.036  Sum_probs=90.5

Q ss_pred             EEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC--------
Q psy1859          17 RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS--------   88 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--------   88 (162)
                      ..++|+|++++ +..+.++.+.+|+.+..+  ....  +..+...      ...+.+++|||+|++|+.++.        
T Consensus        19 ~~~~~s~dg~~-~~~~~d~~i~~~~~~~g~--~~~~--~~~~~~~------~~~~~~~~~SpDg~~la~~~~~~~~~~~s   87 (719)
T 1z68_A           19 FFPNWISGQEY-LHQSADNNIVLYNIETGQ--SYTI--LSNRTMK------SVNASNYGLSPDRQFVYLESDYSKLWRYS   87 (719)
T ss_dssp             CCCEESSSSEE-EEECTTSCEEEEESSSCC--EEEE--ECHHHHH------TTTCSEEEECTTSSEEEEEEEEEECSSSC
T ss_pred             CccEECCCCeE-EEEcCCCCEEEEEcCCCc--EEEE--Ecccccc------ccceeeEEECCCCCeEEEEecCceeEEee
Confidence            46889999964 444568999996554432  2222  2222110      002889999999999988876        


Q ss_pred             -CCeEEEEeCCCccce--eeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeee-ccCCCce---------
Q psy1859          89 -DGYVNIWDGFNKKRL--CQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQF-HRYDTGI---------  154 (162)
Q Consensus        89 -d~~v~~wd~~~~~~~--~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~v---------  154 (162)
                       ++.|++||+.+++.+  ..+   ...+..+ |||||+.|+.+. ++.|++||+.+++..... .++...|         
T Consensus        88 ~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~  163 (719)
T 1z68_A           88 YTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVY  163 (719)
T ss_dssp             EEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHH
T ss_pred             cceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccccee
Confidence             789999999988763  222   2457778 999999999885 789999999888765432 2222222         


Q ss_pred             --------eEEEecCC
Q psy1859         155 --------TSLCFSYD  162 (162)
Q Consensus       155 --------~~v~~~pd  162 (162)
                              .+++||||
T Consensus       164 ~ee~~~~~~~~~wSPD  179 (719)
T 1z68_A          164 EEEMLATKYALWWSPN  179 (719)
T ss_dssp             HHHTTCSSCCEEECTT
T ss_pred             eeecccCcccEEECCC
Confidence                    48999997

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.57  E-value=3.1e-14  Score=96.24  Aligned_cols=131  Identities=6%  Similarity=-0.017  Sum_probs=93.0

Q ss_pred             EEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCE-EEEecCCCeEEEEeC
Q psy1859          19 IKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT-FATGGSDGYVNIWDG   97 (162)
Q Consensus        19 i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~~~~~d~~v~~wd~   97 (162)
                      ++++++++.+++++.++.|.+|+.  .+  .+....+.....        ..+..++|+|+++. +++...++.|.+||+
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~--~~--~~~~~~~~~~~~--------~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~   72 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDV--AS--DTVYKSCVMPDK--------FGPGTAMMAPDNRTAYVLNNHYGDIYGIDL   72 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEET--TT--TEEEEEEECSSC--------CSSCEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             ccccCCCEEEEEeCCCCeEEEEEC--CC--CcEEEEEecCCC--------CCCceeEECCCCCEEEEEeCCCCcEEEEeC
Confidence            456778888999999999999554  33  233333332210        13678999999975 456667899999999


Q ss_pred             CCccceeeeeec------ccceeEE-EcCCCCEEEEecCC------------CeEEEEeCCCcee---eeeeccCCCcee
Q psy1859          98 FNKKRLCQFHRY------DTGITSL-FHQEYNTFATGGSD------------GYVNIWDGFNKKR---LCQFHRYDTGIT  155 (162)
Q Consensus        98 ~~~~~~~~~~~~------~~~v~~~-~~~~~~~l~~~~~d------------~~i~iwd~~~~~~---~~~~~~~~~~v~  155 (162)
                      .+++....+...      ...+..+ |+|+|+++++++.+            +.|.+||+.+++.   +..+. +...+.
T Consensus        73 ~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~  151 (349)
T 1jmx_B           73 DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVY  151 (349)
T ss_dssp             TTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCC
T ss_pred             CCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCccc
Confidence            988877666532      2236778 99999999998865            8999999987543   33333 334688


Q ss_pred             EEEecCC
Q psy1859         156 SLCFSYD  162 (162)
Q Consensus       156 ~v~~~pd  162 (162)
                      +++|+||
T Consensus       152 ~~~~s~d  158 (349)
T 1jmx_B          152 LMRAADD  158 (349)
T ss_dssp             CEEECTT
T ss_pred             ceeECCC
Confidence            8999986

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.57  E-value=5.4e-14  Score=101.58  Aligned_cols=124  Identities=7%  Similarity=-0.092  Sum_probs=90.1

Q ss_pred             EEEEEeeCCCeEEEEcCC----CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC--
Q psy1859          17 RCIKCFPNKQGYVLSSIE----GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG--   90 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~~----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~--   90 (162)
                      .+++|+|||+++++++.+    +.|.+  +|..++..+   .+..+.         ..+..++|+|+|+.|+++..++  
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~--~d~~~g~~~---~l~~~~---------~~~~~~~~SpDG~~l~~~~~~~~~  218 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFT--SNLSSGGLR---VFDSGE---------GSFSSASISPGMKVTAGLETAREA  218 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEE--EETTTCCCE---EECCSS---------CEEEEEEECTTSCEEEEEECSSCE
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEE--EcCCCCCce---EeecCC---------CccccceECCCCCEEEEccCCCee
Confidence            678899999999987766    44555  665442222   223332         2589999999999999888888  


Q ss_pred             eEEEEeCCCccceeeeeecccc--------eeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEec
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTG--------ITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS  160 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~--------v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  160 (162)
                      .|++||+.+++.. .+..+...        .... |+|||.++++++.++.+++|++  ++...   .+.+.+.+++|+
T Consensus       219 ~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s  291 (582)
T 3o4h_A          219 RLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW  291 (582)
T ss_dssp             EEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE
T ss_pred             EEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec
Confidence            8999999987765 44444322        1233 8999999999999999999999  66554   234567888887

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.54  E-value=1.9e-13  Score=93.90  Aligned_cols=132  Identities=5%  Similarity=-0.146  Sum_probs=94.7

Q ss_pred             EEEeeCCCeEEEEcC-CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeC
Q psy1859          19 IKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDG   97 (162)
Q Consensus        19 i~~~~~~~~l~~~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~   97 (162)
                      .+|+|||++|+.++. ++...||.++...+  +.......+..         .+..++|+|+++.|+.++.++.+++||+
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g--~~~~lt~~~~~---------~~~~~~~spdg~~l~~~~~~~~l~~~d~  109 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ--VATQLTEGRGD---------NTFGGFLSPDDDALFYVKDGRNLMRVDL  109 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTC--EEEECCCSSCB---------CSSSCEECTTSSEEEEEETTTEEEEEET
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCC--ceEEeeeCCCC---------CccceEEcCCCCEEEEEeCCCeEEEEEC
Confidence            679999999998877 78767777877652  22222122221         3446789999999999999999999999


Q ss_pred             CCccceeeeeecccceeEE---EcCCCCEEEEe----------------------cCCCeEEEEeCCCceeeeeeccCCC
Q psy1859          98 FNKKRLCQFHRYDTGITSL---FHQEYNTFATG----------------------GSDGYVNIWDGFNKKRLCQFHRYDT  152 (162)
Q Consensus        98 ~~~~~~~~~~~~~~~v~~~---~~~~~~~l~~~----------------------~~d~~i~iwd~~~~~~~~~~~~~~~  152 (162)
                      .+++.......+...+...   ++|++++++..                      ..+..|.+||+.+++... +..+..
T Consensus       110 ~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~  188 (388)
T 3pe7_A          110 ATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQ  188 (388)
T ss_dssp             TTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESS
T ss_pred             CCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCc
Confidence            9887665555454444333   58999988742                      244689999999886543 445666


Q ss_pred             ceeEEEecC-C
Q psy1859         153 GITSLCFSY-D  162 (162)
Q Consensus       153 ~v~~v~~~p-d  162 (162)
                      .+..++|+| |
T Consensus       189 ~~~~~~~sp~d  199 (388)
T 3pe7_A          189 WLGHPIYRPYD  199 (388)
T ss_dssp             CEEEEEEETTE
T ss_pred             cccccEECCCC
Confidence            789999999 5

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.53  E-value=2.9e-13  Score=90.97  Aligned_cols=124  Identities=12%  Similarity=0.007  Sum_probs=90.0

Q ss_pred             CeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCccccee-ceEEEEecCCCCE-EEEecCCCeEEEEeCCCccce
Q psy1859          26 QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY-PVNAISFHQEYNT-FATGGSDGYVNIWDGFNKKRL  103 (162)
Q Consensus        26 ~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~-l~~~~~d~~v~~wd~~~~~~~  103 (162)
                      +++++++.++.|.+|+.  .+  .+....+.....        . .+..++|+|+++. ++++..++.|.+||+.+++.+
T Consensus         2 ~~~v~~~~~~~v~~~d~--~~--~~~~~~~~~~~~--------~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~   69 (337)
T 1pby_B            2 DYILAPARPDKLVVIDT--EK--MAVDKVITIADA--------GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL   69 (337)
T ss_dssp             EEEEEEETTTEEEEEET--TT--TEEEEEEECTTC--------TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE
T ss_pred             cEEEEcCCCCeEEEEEC--CC--CcEEEEEEcCCC--------CCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE
Confidence            46888899999999554  33  233333221110        0 2678999999965 456677899999999988877


Q ss_pred             eeeeec-----ccceeEE-EcCCCCEEEEec------------CCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         104 CQFHRY-----DTGITSL-FHQEYNTFATGG------------SDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       104 ~~~~~~-----~~~v~~~-~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ..+...     ...+..+ |+|+|+++++++            .++.|.+||+.+++.+..+.. ...+.+++|+||
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~d  145 (337)
T 1pby_B           70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARD  145 (337)
T ss_dssp             EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTT
T ss_pred             eeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCC
Confidence            666532     2256678 999999998886            579999999999888777664 446788999986

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.53  E-value=1.2e-13  Score=102.50  Aligned_cols=121  Identities=9%  Similarity=0.006  Sum_probs=85.8

Q ss_pred             cccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC---
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD---   89 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d---   89 (162)
                      ..+...++|+|++++++++  ++.|.+|+....+  ...  .+..+...    .+......++|||+|+.|+.++.+   
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~--~~~--~~~~~~~~----~~~~~~~~~~~Spdg~~l~~~~~~~~~   85 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGN--SSV--FLENSTFD----EFGHSINDYSISPDGQFILLEYNYVKQ   85 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCC--EEE--EECTTTTT----TCCSCCCEEEECTTSSEEEEEEEEEEC
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCc--eEE--EEechhhh----hhcccccceEECCCCCEEEEEECCeee
Confidence            3455689999999888876  8999996654432  222  23333211    011123458999999999988775   


Q ss_pred             ------CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeee
Q psy1859          90 ------GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLC  145 (162)
Q Consensus        90 ------~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  145 (162)
                            +.+.+||+.+++.. .+..+...+... |||||+.|+.+ .++.|++||+.+++..+
T Consensus        86 ~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~  146 (740)
T 4a5s_A           86 WRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR  146 (740)
T ss_dssp             SSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE
T ss_pred             EEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEE
Confidence                  66779999988654 345566678888 99999999888 56899999998877543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.53  E-value=3.1e-13  Score=90.83  Aligned_cols=125  Identities=10%  Similarity=-0.038  Sum_probs=88.7

Q ss_pred             cEEEEEEeeCCCeEE-EEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec------
Q psy1859          15 QTRCIKCFPNKQGYV-LSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG------   87 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~-~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~------   87 (162)
                      ....++|+|+++.++ ++..++.|.+|+..  +  .+....+.....    ..+...+..++|+|+++.++++.      
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~--~--~~~~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  106 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLV--T--GETLGRIDLSTP----EERVKSLFGAALSPDGKTLAIYESPVRLE  106 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETT--T--CCEEEEEECCBT----TEEEECTTCEEECTTSSEEEEEEEEEEEC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECC--C--CCeEeeEEcCCc----ccccccccceEECCCCCEEEEEecccccc
Confidence            467899999997664 55667888885543  3  222222221110    00122477899999998888775      


Q ss_pred             ------CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccC
Q psy1859          88 ------SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY  150 (162)
Q Consensus        88 ------~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  150 (162)
                            .++.|.+||+.+++.+..+.. ...+..+ |+|++++++++  ++.|.+||+.+++.+..+..+
T Consensus       107 ~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~  173 (337)
T 1pby_B          107 LTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQ  173 (337)
T ss_dssp             SSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECST
T ss_pred             cccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecc
Confidence                  579999999998877766654 4557778 99999988888  688999999999887666543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.53  E-value=2.9e-13  Score=99.06  Aligned_cols=139  Identities=6%  Similarity=-0.105  Sum_probs=89.7

Q ss_pred             cccEEEEEEeeCCCeEEEEcCC--------CcEEEEEecCCc------ccceeeeeeeeeeeccCcccceeceEEEEecC
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIE--------GRAAVEYLDTGP------EMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ   78 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~--------g~i~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p   78 (162)
                      ...+..++|+|||+.|++++.+        +...||.|+...      +..+.+.  ..+.         ..+..++|||
T Consensus       129 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~--~~~~---------~~~~~~~~Sp  197 (662)
T 3azo_A          129 GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELS--DDAH---------RFVTGPRLSP  197 (662)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESS--CSCS---------SEECCCEECT
T ss_pred             CccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEE--ecCC---------CcccCceECC
Confidence            3466789999999999988765        123344455443      2222211  0111         2577899999


Q ss_pred             CCCEEEEecCC--------CeEEEEeCC-Cc---cceeeeeecccceeEE-EcCCCCEEEEecCCC--eEEEEeCCCcee
Q psy1859          79 EYNTFATGGSD--------GYVNIWDGF-NK---KRLCQFHRYDTGITSL-FHQEYNTFATGGSDG--YVNIWDGFNKKR  143 (162)
Q Consensus        79 ~~~~l~~~~~d--------~~v~~wd~~-~~---~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~--~i~iwd~~~~~~  143 (162)
                      +|+.|+.++.+        ..|++||+. ++   +.......+...+..+ |+|||+++++++.++  .|.+||+.+++.
T Consensus       198 DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~  277 (662)
T 3azo_A          198 DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA  277 (662)
T ss_dssp             TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE
T ss_pred             CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce
Confidence            99998877644        489999998 46   3333333446778888 999999888888888  677777766665


Q ss_pred             eeeeccCCCc--------eeEEEecCC
Q psy1859         144 LCQFHRYDTG--------ITSLCFSYD  162 (162)
Q Consensus       144 ~~~~~~~~~~--------v~~v~~~pd  162 (162)
                      ......+...        +.+++|+||
T Consensus       278 ~~l~~~~~~~~~p~w~~~~~~~~~~~~  304 (662)
T 3azo_A          278 TQLCRREEEFAGPLWTPGMRWFAPLAN  304 (662)
T ss_dssp             EESSCCSSBSSCCCCSTTCCSEEECTT
T ss_pred             eecccccccccCccccccCceEeEeCC
Confidence            4433332221        445666654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.52  E-value=9.2e-13  Score=88.98  Aligned_cols=129  Identities=11%  Similarity=-0.028  Sum_probs=89.7

Q ss_pred             EEEEEEeeCCCeEEEEcCC------------CcEEEEEecCCccccee-eeeeeeeeeccCcccceeceEEEEecCCCCE
Q psy1859          16 TRCIKCFPNKQGYVLSSIE------------GRAAVEYLDTGPEMQKM-KYAFKCHRIKEDGIEKIYPVNAISFHQEYNT   82 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~------------g~i~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~   82 (162)
                      +..++|+|+++++++++.+            +.+.+|+.+...  ... ...+..+          ..+.+++|+|+++ 
T Consensus        94 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~----------~~~~~~~~s~dg~-  160 (349)
T 1jmx_B           94 MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL--EAKPVRTFPMP----------RQVYLMRAADDGS-  160 (349)
T ss_dssp             SSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG--GBCCSEEEECC----------SSCCCEEECTTSC-
T ss_pred             ccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc--ccceeeeccCC----------CcccceeECCCCc-
Confidence            5678999999999988765            888886554311  111 1111111          1488899999999 


Q ss_pred             EEEecCCCeEEEEeCCCccceeeeeecc----------------------------------------------------
Q psy1859          83 FATGGSDGYVNIWDGFNKKRLCQFHRYD----------------------------------------------------  110 (162)
Q Consensus        83 l~~~~~d~~v~~wd~~~~~~~~~~~~~~----------------------------------------------------  110 (162)
                      +++++.  .|.+||+.+++.+..+....                                                    
T Consensus       161 l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  238 (349)
T 1jmx_B          161 LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  238 (349)
T ss_dssp             EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence            555543  39999998877655443221                                                    


Q ss_pred             ----------------cceeEE-EcC-CCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         111 ----------------TGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       111 ----------------~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                                      ..+..+ |+| ++++++++  ++.|.+||+.+++.+..+.. ...+.+++|+||
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~d  305 (349)
T 1jmx_B          239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKK  305 (349)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSS
T ss_pred             eccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCC
Confidence                            123455 789 99999888  88999999999988777753 345788999986

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.51  E-value=3.8e-13  Score=92.09  Aligned_cols=136  Identities=9%  Similarity=0.041  Sum_probs=91.6

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCE--EEEec-----
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT--FATGG-----   87 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--l~~~~-----   87 (162)
                      .+..++++|+++++++++.+ .+.+|+.+. +  .+.... ..+...       ..+..++|+|+++.  ++++.     
T Consensus        41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~-~--g~~~~~-~~~~~~-------g~~~~~~~spdg~~l~~~~~~~~~~~  108 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMK-KWSSFAVKS-P--TEIVHE-ASHPIG-------GHPRANDADTNTRAIFLLAAKQPPYA  108 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT-EEEEEEEEE-T--TEEEEE-EEEECC-------SSGGGGCTTSCCEEEEEEECSSTTCC
T ss_pred             CCcEEEECCCCCEEEEEccc-eEEEEEECC-C--CCEEEe-eEeecC-------CCCccEEECCCCCEEEEEEecCCcce
Confidence            45679999999999888777 888877652 2  122111 111100       02445889999984  44553     


Q ss_pred             --------CCCeEEEEeCC-Cccceeeeee----cccceeEE-EcCCCCEEEEec-CCCeEEEEeCC-Cceee--eeec-
Q psy1859          88 --------SDGYVNIWDGF-NKKRLCQFHR----YDTGITSL-FHQEYNTFATGG-SDGYVNIWDGF-NKKRL--CQFH-  148 (162)
Q Consensus        88 --------~d~~v~~wd~~-~~~~~~~~~~----~~~~v~~~-~~~~~~~l~~~~-~d~~i~iwd~~-~~~~~--~~~~-  148 (162)
                              .++.+.+|++. +++....+..    +...+..+ |+|+|+++++++ .++.|++||+. +++..  ..+. 
T Consensus       109 ~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~  188 (365)
T 1jof_A          109 VYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDA  188 (365)
T ss_dssp             EEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEEC
T ss_pred             eccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEec
Confidence                    68999999997 3554433332    34567888 999999888775 46799999998 66542  3333 


Q ss_pred             -cCCCceeEEEecCC
Q psy1859         149 -RYDTGITSLCFSYD  162 (162)
Q Consensus       149 -~~~~~v~~v~~~pd  162 (162)
                       .|...+..++|+||
T Consensus       189 ~~~g~~p~~~~~spd  203 (365)
T 1jof_A          189 PDPGDHPRWVAMHPT  203 (365)
T ss_dssp             SSTTCCEEEEEECTT
T ss_pred             CCCCCCCCEeEECCC
Confidence             23567899999997

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.48  E-value=6.2e-13  Score=98.67  Aligned_cols=132  Identities=8%  Similarity=-0.076  Sum_probs=87.7

Q ss_pred             EEEEeeCCCeEEEEcCCCcE-------EEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          18 CIKCFPNKQGYVLSSIEGRA-------AVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        18 ~i~~~~~~~~l~~~~~~g~i-------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .++|||||++++.++.++.+       .+|.||..++...   .+..+.         ..+...+|||+|+.|+.+ .++
T Consensus        66 ~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~---~l~~~~---------~~~~~~~~SPdG~~la~~-~~~  132 (740)
T 4a5s_A           66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI---TEERIP---------NNTQWVTWSPVGHKLAYV-WNN  132 (740)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC---CSSCCC---------TTEEEEEECSSTTCEEEE-ETT
T ss_pred             ceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE---EcccCC---------CcceeeEECCCCCEEEEE-ECC
Confidence            47899999999998876332       2333555542222   222222         268999999999998887 468


Q ss_pred             eEEEEeCCCccceeee-eecccce-----------------eEE-EcCCCCEEEEecCCC--------------------
Q psy1859          91 YVNIWDGFNKKRLCQF-HRYDTGI-----------------TSL-FHQEYNTFATGGSDG--------------------  131 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~-~~~~~~v-----------------~~~-~~~~~~~l~~~~~d~--------------------  131 (162)
                      .|++||+.+++..+.. .++...+                 ..+ |||||++|+.+..|.                    
T Consensus       133 ~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~  212 (740)
T 4a5s_A          133 DIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPK  212 (740)
T ss_dssp             EEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCE
T ss_pred             eEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCc
Confidence            9999999887644321 1221111                 347 999999998874221                    


Q ss_pred             ----------------eEEEEeCCC---ce--eeeeec------cCCCceeEEEecCC
Q psy1859         132 ----------------YVNIWDGFN---KK--RLCQFH------RYDTGITSLCFSYD  162 (162)
Q Consensus       132 ----------------~i~iwd~~~---~~--~~~~~~------~~~~~v~~v~~~pd  162 (162)
                                      .|++||+.+   ++  ....+.      .|...+..++|+||
T Consensus       213 ~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspd  270 (740)
T 4a5s_A          213 TVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQ  270 (740)
T ss_dssp             EEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEET
T ss_pred             ceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCC
Confidence                            588999988   73  222333      37778999999997

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.48  E-value=4.2e-12  Score=87.38  Aligned_cols=128  Identities=12%  Similarity=-0.021  Sum_probs=93.6

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ..+.. +..++|  +++.|+++ .++.+++|+.....  .  ......+..         ++.++.+.+.  .+++++.|
T Consensus        85 ~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~--~--~~~~~~~~~---------~v~~i~~~~p--~~av~~~d  145 (388)
T 1xip_A           85 KEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELS--E--FRTVTSFEK---------PVFQLKNVNN--TLVILNSV  145 (388)
T ss_dssp             EECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTT--C--EEEEEECSS---------CEEEEEECSS--EEEEEETT
T ss_pred             eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhh--c--cCccceeec---------ceeeEEecCC--CEEEEECC
Confidence            34666 899999  88999998 78999996554322  1  112222222         5777776553  38889999


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCcee--eeee------c---cCCCceeEE
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKR--LCQF------H---RYDTGITSL  157 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~------~---~~~~~v~~v  157 (162)
                      |.+.+||+.++....    ....++++ |||+|  ++.|..||.+++|+...+..  ..++      .   +|...|.+|
T Consensus       146 G~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI  219 (388)
T 1xip_A          146 NDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSV  219 (388)
T ss_dssp             SEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEE
T ss_pred             CCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEE
Confidence            999999999776532    45689999 99999  67888999999999877664  4455      2   367789999


Q ss_pred             EecCC
Q psy1859         158 CFSYD  162 (162)
Q Consensus       158 ~~~pd  162 (162)
                      +|.++
T Consensus       220 ~wl~~  224 (388)
T 1xip_A          220 TILSP  224 (388)
T ss_dssp             EESSS
T ss_pred             EEecC
Confidence            99864

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.46  E-value=1.5e-12  Score=95.24  Aligned_cols=136  Identities=5%  Similarity=-0.095  Sum_probs=90.1

Q ss_pred             EEEEe--eCCCe-EEEEcCCCcEEEEEecCC--c-ccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC--
Q psy1859          18 CIKCF--PNKQG-YVLSSIEGRAAVEYLDTG--P-EMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD--   89 (162)
Q Consensus        18 ~i~~~--~~~~~-l~~~~~~g~i~i~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d--   89 (162)
                      ...|+  ||++. ++.++.. ...||.++..  . +....   +.....    ..|...+..++|+|+|+.|+.++.+  
T Consensus        81 ~~~~~~SPDg~~~la~~~~~-~~~l~~~~~~~~g~~~~~~---l~~~~~----~~~~~~~~~~~~spDg~~l~~~~~~~~  152 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFG-DQRLYAFEPDAPGGAVPRP---LTPVSA----VGGGLRWADPVLLPERGEVWCMAEEFT  152 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTT-TCCEEEECTTSTTCCCCEE---CSCCCC----STTCEEEEEEEEETTTTEEEEEEEEEC
T ss_pred             cceeeeecCCCeEEEEEECC-CCeEEEEcCCCCCCCCCEe---ccCCcc----CCCCccccCcEECCCCCEEEEEEeccc
Confidence            44455  99998 7765443 4456667654  1 11111   111100    0022358899999999999988776  


Q ss_pred             --------CeEEEEeCCC------ccceeeee-ecccceeEE-EcCCCCEEEEecCC--------CeEEEEeCC-Cc---
Q psy1859          90 --------GYVNIWDGFN------KKRLCQFH-RYDTGITSL-FHQEYNTFATGGSD--------GYVNIWDGF-NK---  141 (162)
Q Consensus        90 --------~~v~~wd~~~------~~~~~~~~-~~~~~v~~~-~~~~~~~l~~~~~d--------~~i~iwd~~-~~---  141 (162)
                              ..|++||+.+      ++. ..+. .+...+..+ |+|||++|+.++.+        ..|++||+. ++   
T Consensus       153 ~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~  231 (662)
T 3azo_A          153 GEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA  231 (662)
T ss_dssp             SSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE
T ss_pred             CCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc
Confidence                    5899999987      543 3444 444566677 99999999887744        379999998 56   


Q ss_pred             eeeeeeccCCCceeEEEecCC
Q psy1859         142 KRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       142 ~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +.......+...+..++|+||
T Consensus       232 ~~~~l~~~~~~~~~~~~~spd  252 (662)
T 3azo_A          232 DTRTLLGGPEEAIAQAEWAPD  252 (662)
T ss_dssp             EEEEEEEETTBCEEEEEECTT
T ss_pred             ccEEeCCCCCceEcceEECCC
Confidence            444444455778999999997

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.44  E-value=2.1e-11  Score=83.54  Aligned_cols=87  Identities=18%  Similarity=0.153  Sum_probs=73.5

Q ss_pred             EEEecCCCCEEEEecC-----------CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCC
Q psy1859          73 AISFHQEYNTFATGGS-----------DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFN  140 (162)
Q Consensus        73 ~~~~~p~~~~l~~~~~-----------d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~  140 (162)
                      .++|+|++..+.++..           .+.|.+||+.+++.+..+..+.  ...+ |+|+|++|++++. +.|.+||..+
T Consensus       258 ~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t  334 (361)
T 2oiz_A          258 LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQ  334 (361)
T ss_dssp             CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSS
T ss_pred             EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCC
Confidence            3789999866655432           3589999999999999888766  8888 9999999999887 9999999999


Q ss_pred             c--eeeeeeccCCCceeEEEecCC
Q psy1859         141 K--KRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       141 ~--~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +  +.+.++..+......++|+||
T Consensus       335 ~~l~~~~~i~~~G~~P~~~~~~p~  358 (361)
T 2oiz_A          335 PEPKLLRTIEGAAEASLQVQFHPV  358 (361)
T ss_dssp             SSCEEEEEETTSCSSEEEEEECCC
T ss_pred             CcceeeEEeccCCCCcEEEEecCC
Confidence            9  988887667778899999997

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.42  E-value=1.6e-11  Score=84.09  Aligned_cols=138  Identities=8%  Similarity=0.037  Sum_probs=88.2

Q ss_pred             EEEEEeeCCCe--EEEEc-------------CCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCC
Q psy1859          17 RCIKCFPNKQG--YVLSS-------------IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN   81 (162)
Q Consensus        17 ~~i~~~~~~~~--l~~~~-------------~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~   81 (162)
                      ..++++|++++  ++++.             .++.+.+|+.+...   +....+.....     .+...+.+++|+|+|+
T Consensus        86 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g---~~~~~~~~~~~-----~~~~~~~~~~~spdG~  157 (365)
T 1jof_A           86 RANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETG---KLEKNVQNYEY-----QENTGIHGMVFDPTET  157 (365)
T ss_dssp             GGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTC---CEEEEEEEEEC-----CTTCCEEEEEECTTSS
T ss_pred             ccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCC---cCcceEeeEEe-----CCCCcceEEEECCCCC
Confidence            34788999985  44443             58899998776432   11111111100     0112588999999998


Q ss_pred             EEEEec-CCCeEEEEeCC-Cccce--eeee--ecccceeEE-EcCCCCEEEEecC-CCeEEEEeCC--Cceee---eee-
Q psy1859          82 TFATGG-SDGYVNIWDGF-NKKRL--CQFH--RYDTGITSL-FHQEYNTFATGGS-DGYVNIWDGF--NKKRL---CQF-  147 (162)
Q Consensus        82 ~l~~~~-~d~~v~~wd~~-~~~~~--~~~~--~~~~~v~~~-~~~~~~~l~~~~~-d~~i~iwd~~--~~~~~---~~~-  147 (162)
                      +++++. .++.|.+||+. +++..  ..+.  .+...+..+ |+|+|+++++++. ++.|.+|++.  +++..   ..+ 
T Consensus       158 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~  237 (365)
T 1jof_A          158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP  237 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE
Confidence            777665 46899999998 66542  2232  124568888 9999999887764 6899999764  45432   122 


Q ss_pred             --cc----CCC------ceeEEE-ecCC
Q psy1859         148 --HR----YDT------GITSLC-FSYD  162 (162)
Q Consensus       148 --~~----~~~------~v~~v~-~~pd  162 (162)
                        ..    |..      .+.+++ |+||
T Consensus       238 ~~~~~~~g~~~~~~~~~~~~~i~~~spd  265 (365)
T 1jof_A          238 LIPPGIPDRDPETGKGLYRADVCALTFS  265 (365)
T ss_dssp             SSCTTCCCBCTTTSSBSEEEEEEEECTT
T ss_pred             cCCCCcCCcccccccccccccEEEECCC
Confidence              11    122      488999 9997

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.40  E-value=8.3e-11  Score=77.68  Aligned_cols=135  Identities=10%  Similarity=0.100  Sum_probs=95.1

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      .....+++.|+++.+++...++.|.+|  +...   .....+....       +...+.+++++|+++++++...++.|.
T Consensus       121 ~~~~~i~~~~~g~l~v~~~~~~~i~~~--~~~g---~~~~~~~~~~-------~~~~p~~i~~~~~g~l~v~~~~~~~i~  188 (286)
T 1q7f_A          121 QHPRGVTVDNKGRIIVVECKVMRVIIF--DQNG---NVLHKFGCSK-------HLEFPNGVVVNDKQEIFISDNRAHCVK  188 (286)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEE--CTTS---CEEEEEECTT-------TCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred             CCceEEEEeCCCCEEEEECCCCEEEEE--cCCC---CEEEEeCCCC-------ccCCcEEEEECCCCCEEEEECCCCEEE
Confidence            356789999999887777778888885  4322   2222221100       112578999999999888888899999


Q ss_pred             EEeCCCccceeeeeec--ccceeEE-EcCCCCEEEEecCCC-eEEEEeCCCceeeeeeccCCC--ceeEEEecCC
Q psy1859          94 IWDGFNKKRLCQFHRY--DTGITSL-FHQEYNTFATGGSDG-YVNIWDGFNKKRLCQFHRYDT--GITSLCFSYD  162 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~--~~~v~~~-~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~--~v~~v~~~pd  162 (162)
                      +||.. ++.+..+...  ...+..+ ++++|+++++...++ .|.+||. +++.+..+..+..  .+.+++|+||
T Consensus       189 ~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~  261 (286)
T 1q7f_A          189 VFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD  261 (286)
T ss_dssp             EEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred             EEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCC
Confidence            99974 4555555433  2467788 999999888887776 9999996 5666666654432  4778999875

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.40  E-value=1.8e-10  Score=77.82  Aligned_cols=143  Identities=6%  Similarity=0.029  Sum_probs=98.1

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecC-CCCEEEEec-CCCeE
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ-EYNTFATGG-SDGYV   92 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~-~d~~v   92 (162)
                      ....++++|+++.+++...++.|.+|+.+..   ...+..+...........+......++++| ++.++++.+ .++.|
T Consensus        92 ~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~---~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I  168 (329)
T 3fvz_A           92 LPHGLSIDTDGNYWVTDVALHQVFKLDPHSK---EGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI  168 (329)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEECTTCS---SCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred             CceEEEECCCCCEEEEECCCCEEEEEeCCCC---eEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence            4567999999998888888888888543321   112222211000000112333588999999 788888886 69999


Q ss_pred             EEEeCCCccceeeeeecc----------cceeEE-EcCC-CCEEEEecCCCeEEEEeCCCceeeeeec--cCCCceeEEE
Q psy1859          93 NIWDGFNKKRLCQFHRYD----------TGITSL-FHQE-YNTFATGGSDGYVNIWDGFNKKRLCQFH--RYDTGITSLC  158 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~----------~~v~~~-~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~v~  158 (162)
                      ++|| .+++.+..+....          .....+ ++|+ +.++++...++.|++||..+++.+..+.  .+...+.+++
T Consensus       169 ~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~  247 (329)
T 3fvz_A          169 VQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS  247 (329)
T ss_dssp             EEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred             EEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence            9999 4566666554322          236788 9998 7777777788999999998888877773  4556788888


Q ss_pred             ecC
Q psy1859         159 FSY  161 (162)
Q Consensus       159 ~~p  161 (162)
                      |+|
T Consensus       248 ~~p  250 (329)
T 3fvz_A          248 YIP  250 (329)
T ss_dssp             EET
T ss_pred             ecC
Confidence            887

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.36  E-value=1.9e-10  Score=77.75  Aligned_cols=136  Identities=13%  Similarity=0.053  Sum_probs=94.0

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCC------------------------cEEEEEecCCcccceeeeeeeeeeeccCccccee
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEG------------------------RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY   69 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g------------------------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (162)
                      +.+..++++|+|+.+++...++                        .|.+  +|..+  .+....+..        .+..
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~d~~~--g~~~~~~~~--------~~~~   91 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILV--IDPNN--AEILQSSGK--------NLFY   91 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEE--ECTTT--CCEEEEECT--------TTCS
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEE--EECCC--CeEEeccCC--------CccC
Confidence            5678999999999888877763                        5666  55543  222221111        1222


Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCcc-ceeeee---------ecccceeEE-EcC-CCCEEEEec-CCCeEEEE
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKK-RLCQFH---------RYDTGITSL-FHQ-EYNTFATGG-SDGYVNIW  136 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~-~~~~~~---------~~~~~v~~~-~~~-~~~~l~~~~-~d~~i~iw  136 (162)
                      ....++++|+++++++...++.|++||..... .+..+.         .+-.....+ ++| ++.++++.+ .++.|++|
T Consensus        92 ~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~  171 (329)
T 3fvz_A           92 LPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQF  171 (329)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEE
T ss_pred             CceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEE
Confidence            57899999999999999999999999986432 444442         222357788 999 788888886 68999999


Q ss_pred             eCCCceeeeeeccCC----------CceeEEEecCC
Q psy1859         137 DGFNKKRLCQFHRYD----------TGITSLCFSYD  162 (162)
Q Consensus       137 d~~~~~~~~~~~~~~----------~~v~~v~~~pd  162 (162)
                      |. +++.+..+....          ..+..++++|+
T Consensus       172 ~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~  206 (329)
T 3fvz_A          172 SP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH  206 (329)
T ss_dssp             CT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETT
T ss_pred             cC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECC
Confidence            94 676666653222          23788998875

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.36  E-value=2.3e-11  Score=89.94  Aligned_cols=132  Identities=4%  Similarity=-0.128  Sum_probs=85.5

Q ss_pred             cEEEEEEeeCCCeEEEEcCCC-----cEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEG-----RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      .+..++|||||++++.+..++     .|++  +|..+  .+.... .....         .+..++|+|+++.|+.++.+
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v--~d~~t--g~~~~~-~~~~~---------~~~~~~wspDg~~l~~~~~~  191 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKF--MKVDG--AKELPD-VLERV---------KFSCMAWTHDGKGMFYNAYP  191 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEE--EETTT--TEEEEE-EEEEE---------CSCCEEECTTSSEEEEEECC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEE--EECCC--CCCCcc-cccCc---------ccceEEEEeCCCEEEEEEEC
Confidence            467789999999998775543     5666  55544  222211 11111         36789999999988888776


Q ss_pred             Ce----------------EEEEeCCCccce--eeeee--cccceeEE-EcCCCCEEEEecC-----CCeEEEEeCCC---
Q psy1859          90 GY----------------VNIWDGFNKKRL--CQFHR--YDTGITSL-FHQEYNTFATGGS-----DGYVNIWDGFN---  140 (162)
Q Consensus        90 ~~----------------v~~wd~~~~~~~--~~~~~--~~~~v~~~-~~~~~~~l~~~~~-----d~~i~iwd~~~---  140 (162)
                      +.                |++|++.+++..  ..+..  +...+..+ |+|||++|+.++.     +..|++||+.+   
T Consensus       192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~  271 (710)
T 2xdw_A          192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN  271 (710)
T ss_dssp             CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred             CccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccc
Confidence            55                999999876532  22222  33446678 9999999888764     67899999976   


Q ss_pred             ---ce-eeeeeccCCCceeEEEecC
Q psy1859         141 ---KK-RLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus       141 ---~~-~~~~~~~~~~~v~~v~~~p  161 (162)
                         +. ....+..+...+.. .|+|
T Consensus       272 ~~~~~~~~~~l~~~~~~~~~-~~s~  295 (710)
T 2xdw_A          272 GITGILKWVKLIDNFEGEYD-YVTN  295 (710)
T ss_dssp             SSCSSCCCEEEECSSSSCEE-EEEE
T ss_pred             ccCCccceEEeeCCCCcEEE-EEec
Confidence               43 34445555544443 2444

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.35  E-value=2e-11  Score=84.01  Aligned_cols=131  Identities=14%  Similarity=0.028  Sum_probs=90.7

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccc---eeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQ---KMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      ++..+++++....+++|+.++. .+|+.+.-....   ...+... .     ...+.. |+.++|  ++..|+++ .++.
T Consensus        39 ~~nlLais~~~gll~a~~~~~l-~v~~~~~l~~~~~~~~~~~~~~-~-----~~~lp~-V~~l~f--d~~~L~v~-~~~~  107 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKA-VVGELQLLRDHITSDSTPLTFK-W-----EKEIPD-VIFVCF--HGDQVLVS-TRNA  107 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEE-EEEEHHHHHHHHHSSSCCCCCS-E-----EEECTT-EEEEEE--ETTEEEEE-ESSE
T ss_pred             cccEEEEcCCCCEEEEeCCCEE-EEEEhhHhhhhhccccccccce-E-----EeeCCC-eeEEEE--CCCEEEEE-cCCc
Confidence            4678999999999999888754 556543211000   0001100 0     011334 999999  88899888 8899


Q ss_pred             EEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          92 VNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |++||+++.........+...+..+ +.+.  .+++++.||.|.+||++++....    +...|++++|+|+
T Consensus       108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpk  173 (388)
T 1xip_A          108 LYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNS  173 (388)
T ss_dssp             EEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSS
T ss_pred             EEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCC
Confidence            9999998765555556666777777 5443  28888999999999998776543    4458999999985

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.35  E-value=7.4e-11  Score=79.86  Aligned_cols=89  Identities=12%  Similarity=0.072  Sum_probs=66.7

Q ss_pred             ceEEEEecCCCCEEEEecCC---C--eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCC-------------
Q psy1859          70 PVNAISFHQEYNTFATGGSD---G--YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSD-------------  130 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d---~--~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d-------------  130 (162)
                      .+..++|+|+|+.|+..+.+   +  .|++||+.+++....... .. +..+ |+|||+.|+.++.+             
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            48899999999988876643   2  488889887765544433 33 7888 99999988887632             


Q ss_pred             --------------CeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         131 --------------GYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       131 --------------~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                                    ..|.+||+.+++.+..+.. . .+..+.|+||
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spd  181 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRD  181 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETT
T ss_pred             ceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCC
Confidence                          5799999998876455554 3 7888999987

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.33  E-value=5.4e-11  Score=80.52  Aligned_cols=101  Identities=9%  Similarity=0.076  Sum_probs=70.4

Q ss_pred             ccEEEEEEeeCCCeEEEEcCC---CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC--
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIE---GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS--   88 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--   88 (162)
                      ..+..++|+|+|+.|+.++.+   +...||.++...+....+.   ..         .. +..++|+|+++.|+.++.  
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~---~~---------~~-~~~~~wspdg~~l~~~~~~~  125 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL---EA---------KN-IRSLEWNEDSRKLLIVGFKR  125 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE---EE---------SE-EEEEEECTTSSEEEEEEECC
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE---cC---------CC-ccceeECCCCCEEEEEEccC
Confidence            345678999999999887654   5666777776542222211   11         12 788999999988887753  


Q ss_pred             -------------------------CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCC
Q psy1859          89 -------------------------DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSD  130 (162)
Q Consensus        89 -------------------------d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d  130 (162)
                                               ...|++||+.+++.+..+.. . .+..+ |+|+| +++++..+
T Consensus       126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~  190 (347)
T 2gop_A          126 REDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHR  190 (347)
T ss_dssp             CC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECC
T ss_pred             CCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecc
Confidence                                     25789999988776455554 3 77788 99999 77777544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.30  E-value=5e-11  Score=81.83  Aligned_cols=136  Identities=7%  Similarity=-0.068  Sum_probs=83.7

Q ss_pred             cccEEEEEEee-CCCeEEEEcCCCc----EEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859          13 KFQTRCIKCFP-NKQGYVLSSIEGR----AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus        13 ~~~~~~i~~~~-~~~~l~~~~~~g~----i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      ...+..+.|+| +++.++..+.++.    ..||.++........+..   +..       ...+..++|+|+++.|+..+
T Consensus       187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~-------~~~~~~~~~spdg~~l~~~~  256 (396)
T 3c5m_A          187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE---HAE-------GESCTHEFWIPDGSAMAYVS  256 (396)
T ss_dssp             SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC---CCT-------TEEEEEEEECTTSSCEEEEE
T ss_pred             CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec---cCC-------CccccceEECCCCCEEEEEe
Confidence            34567789999 7887777655433    445556654321222111   110       11478899999998776654


Q ss_pred             CC-----CeEEEEeCCCccceeeeeecccceeEE-EcC-CCCEEEEec----------------CCCeEEEEeCCCceee
Q psy1859          88 SD-----GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ-EYNTFATGG----------------SDGYVNIWDGFNKKRL  144 (162)
Q Consensus        88 ~d-----~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~----------------~d~~i~iwd~~~~~~~  144 (162)
                      .+     +.|++||+.+++...... ... .. + |+| +|+++++++                .+..|.+||+.+++..
T Consensus       257 ~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~  333 (396)
T 3c5m_A          257 YFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ  333 (396)
T ss_dssp             EETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC
T ss_pred             cCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE
Confidence            33     459999998775433221 112 22 7 999 999888754                3478999999877643


Q ss_pred             eeeccCCC-----------ceeEEEecCC
Q psy1859         145 CQFHRYDT-----------GITSLCFSYD  162 (162)
Q Consensus       145 ~~~~~~~~-----------~v~~v~~~pd  162 (162)
                       .+..+..           .+..++|+||
T Consensus       334 -~l~~~~~~~~~~~~~~~~~~~~~~~s~d  361 (396)
T 3c5m_A          334 -KLCKHSTSWDVLDGDRQITHPHPSFTPN  361 (396)
T ss_dssp             -EEEECCCCCCCBTTBSSTTCCCCEECTT
T ss_pred             -EccCCCCccccccccccCCCCCceEccC
Confidence             3444443           2566788876

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.30  E-value=5.8e-11  Score=87.65  Aligned_cols=137  Identities=6%  Similarity=-0.096  Sum_probs=88.3

Q ss_pred             EeeCCCeEEEEcCCC---cEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEE-----EecCCCeE
Q psy1859          21 CFPNKQGYVLSSIEG---RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA-----TGGSDGYV   92 (162)
Q Consensus        21 ~~~~~~~l~~~~~~g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-----~~~~d~~v   92 (162)
                      .+|+|++++....++   .-.||..+...+..+.+.....     ...+|...+.+++|||+|++|+     .|+.+..|
T Consensus        75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~-----~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i  149 (695)
T 2bkl_A           75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNG-----WSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVL  149 (695)
T ss_dssp             CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGG-----SSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEE
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHH-----hccCCCEEEEEEEECCCCCEEEEEECCCCCceEEE
Confidence            458898887765543   3556666643322222221110     0112344689999999999888     34455789


Q ss_pred             EEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCe-------------EEEEeCCCce----eeeeeccCCCce
Q psy1859          93 NIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGY-------------VNIWDGFNKK----RLCQFHRYDTGI  154 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~-------------i~iwd~~~~~----~~~~~~~~~~~v  154 (162)
                      ++||+.+++.+............+ |+|||+.|+.++.|..             |++|++.++.    .+.....+...+
T Consensus       150 ~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~  229 (695)
T 2bkl_A          150 HVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTF  229 (695)
T ss_dssp             EEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCE
T ss_pred             EEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEE
Confidence            999999987651111111112566 9999999999887765             9999998775    333333455678


Q ss_pred             eEEEecCC
Q psy1859         155 TSLCFSYD  162 (162)
Q Consensus       155 ~~v~~~pd  162 (162)
                      .++.|+||
T Consensus       230 ~~~~~SpD  237 (695)
T 2bkl_A          230 LQSDLSRD  237 (695)
T ss_dssp             EEEEECTT
T ss_pred             EEEEECCC
Confidence            89999997

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.30  E-value=5.3e-12  Score=86.70  Aligned_cols=134  Identities=4%  Similarity=-0.190  Sum_probs=88.5

Q ss_pred             EEEEEEeeCCCeEEEEcC-CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEE
Q psy1859          16 TRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI   94 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~   94 (162)
                      +..++|+|+|++++.+.. ++...||.++...+....   +.....        .....+.|+|+++.|+..+.++.|++
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~---l~~~~~--------~~~~~~~~spdg~~l~~~~~~~~l~~  106 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ---LTEGKG--------DNTFGGFISTDERAFFYVKNELNLMK  106 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE---CCCSSC--------BCTTTCEECTTSSEEEEEETTTEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE---eecCCC--------CccccceECCCCCEEEEEEcCCcEEE
Confidence            456789999999877644 455556667765422211   111111        01234789999999999988899999


Q ss_pred             EeCCCccceeeeeecccceeE-------------------E-EcCCCCEEEEe-----cCCCeEEEEeCCCceeeeeecc
Q psy1859          95 WDGFNKKRLCQFHRYDTGITS-------------------L-FHQEYNTFATG-----GSDGYVNIWDGFNKKRLCQFHR  149 (162)
Q Consensus        95 wd~~~~~~~~~~~~~~~~v~~-------------------~-~~~~~~~l~~~-----~~d~~i~iwd~~~~~~~~~~~~  149 (162)
                      ||+.+++.......+......                   + |+|+++.++..     ..+..|.+||+.+++..... .
T Consensus       107 ~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~  185 (396)
T 3c5m_A          107 VDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-Q  185 (396)
T ss_dssp             EETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-E
T ss_pred             EECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-c
Confidence            999887654444323332222                   4 67888876654     35678999999887755444 4


Q ss_pred             CCCceeEEEecC
Q psy1859         150 YDTGITSLCFSY  161 (162)
Q Consensus       150 ~~~~v~~v~~~p  161 (162)
                      +...+..+.|+|
T Consensus       186 ~~~~~~~~~~sp  197 (396)
T 3c5m_A          186 DTAWLGHPIYRP  197 (396)
T ss_dssp             ESSCEEEEEEET
T ss_pred             CCcccccceECC
Confidence            566788999998

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.28  E-value=2.1e-10  Score=78.68  Aligned_cols=130  Identities=8%  Similarity=-0.082  Sum_probs=86.6

Q ss_pred             EEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceE--EEEecCCCCEEEEe---------
Q psy1859          18 CIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN--AISFHQEYNTFATG---------   86 (162)
Q Consensus        18 ~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~p~~~~l~~~---------   86 (162)
                      .+.|+|+++.|+.++.++.+.+|+.+..+  ...+......           .+.  ...++|++..++..         
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~--~~~~~~~~~~-----------~~~~~~~~~~~dg~~l~~~~~~~~~~~~  151 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLE--ENVVYQVPAE-----------WVGYGTWVANSDCTKLVGIEIRREDWVP  151 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCC--EEEEEECCTT-----------EEEEEEEEECTTSSEEEEEEEEGGGCCC
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCc--ceeeeechhh-----------cccccceeECCCCCeeccccccCccccc
Confidence            46899999999999988888885554322  3333221111           122  23448999887642         


Q ss_pred             -------------cCCCeEEEEeCCCccceeeeeecccceeEE-EcC-CCCEEEEecCC------CeEEEEeCCCceeee
Q psy1859          87 -------------GSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQ-EYNTFATGGSD------GYVNIWDGFNKKRLC  145 (162)
Q Consensus        87 -------------~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~  145 (162)
                                   ..+..|.+||+.+++. ..+..+...+..+ |+| +|+.++....+      ..|.++|...+.. .
T Consensus       152 ~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~  229 (388)
T 3pe7_A          152 LTDWKKFHEFYFTKPCCRLMRVDLKTGES-TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-R  229 (388)
T ss_dssp             CCSHHHHHHHGGGCCCEEEEEEETTTCCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-E
T ss_pred             ccccchhhhhhccCCcceEEEEECCCCce-EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-E
Confidence                         2457899999998754 3444556667888 999 99988877653      3788888865543 3


Q ss_pred             eeccCC--CceeEEEecCC
Q psy1859         146 QFHRYD--TGITSLCFSYD  162 (162)
Q Consensus       146 ~~~~~~--~~v~~v~~~pd  162 (162)
                      .+..+.  ..+..++|+||
T Consensus       230 ~l~~~~~~~~~~~~~~spd  248 (388)
T 3pe7_A          230 KVKTHAEGESCTHEFWVPD  248 (388)
T ss_dssp             ESCCCCTTEEEEEEEECTT
T ss_pred             EeeeCCCCcccccceECCC
Confidence            343333  35788899997

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.27  E-value=1.7e-09  Score=72.80  Aligned_cols=134  Identities=15%  Similarity=0.050  Sum_probs=88.3

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC----C
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD----G   90 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d----~   90 (162)
                      ....++|+++++.++++..++.|.+  |+...+......  ..+.         ..+.+++++|+++++++...+    +
T Consensus        46 ~~~~~~~~~~g~l~~~~~~~~~i~~--~d~~~~~~~~~~--~~~~---------~~~~~i~~~~dg~l~v~~~~~~~~~~  112 (333)
T 2dg1_A           46 QLEGLNFDRQGQLFLLDVFEGNIFK--INPETKEIKRPF--VSHK---------ANPAAIKIHKDGRLFVCYLGDFKSTG  112 (333)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEE--ECTTTCCEEEEE--ECSS---------SSEEEEEECTTSCEEEEECTTSSSCC
T ss_pred             cccCcEECCCCCEEEEECCCCEEEE--EeCCCCcEEEEe--eCCC---------CCcceEEECCCCcEEEEeCCCCCCCc
Confidence            3578899999997778888888888  454431122111  1111         258999999999988887666    6


Q ss_pred             eEEEEeCCCccceeeee--ecccceeEE-EcCCCCEEEEecC------CCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          91 YVNIWDGFNKKRLCQFH--RYDTGITSL-FHQEYNTFATGGS------DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      .|.+||..++.....+.  .....+..+ ++|+|+++++...      .+.|..+|..+++... +......+..++|+|
T Consensus       113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~  191 (333)
T 2dg1_A          113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALST  191 (333)
T ss_dssp             EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECT
T ss_pred             eEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECC
Confidence            89999988765432222  233467888 9999988877654      3567777766544332 222333567788887


Q ss_pred             C
Q psy1859         162 D  162 (162)
Q Consensus       162 d  162 (162)
                      |
T Consensus       192 d  192 (333)
T 2dg1_A          192 D  192 (333)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.25  E-value=1.2e-10  Score=86.01  Aligned_cols=131  Identities=7%  Similarity=-0.166  Sum_probs=83.3

Q ss_pred             cEEEEEEeeCCCeEEEE-----cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          15 QTRCIKCFPNKQGYVLS-----SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~-----~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      .+..++|||||++|+.+     +.+..|++|+.+...  .  ...  .+...       .....++|+|+|+.|+.++.+
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~--~--~~~--~~~~~-------~~~~~~~wspDg~~l~~~~~d  188 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGE--W--SKV--DVIEG-------GKYATPKWTPDSKGFYYEWLP  188 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCC--B--CSS--CCBSC-------CTTCCCEECTTSSEEEEEECC
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCC--C--cCC--cccCc-------ccccceEEecCCCEEEEEEec
Confidence            56788999999998854     233567775544322  2  100  01100       012679999999999988876


Q ss_pred             Ce-------------EEEEeCCCccc----eeeeeecccceeEE-EcCCCCEEEEecCCC----eEEEEeCCCceeeeee
Q psy1859          90 GY-------------VNIWDGFNKKR----LCQFHRYDTGITSL-FHQEYNTFATGGSDG----YVNIWDGFNKKRLCQF  147 (162)
Q Consensus        90 ~~-------------v~~wd~~~~~~----~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~  147 (162)
                      ..             |++|++.++..    +.....+...+..+ |+|||++++.++.++    .|.+|+..+++ ...+
T Consensus       189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l  267 (695)
T 2bkl_A          189 TDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLL  267 (695)
T ss_dssp             CCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEE
T ss_pred             CCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEe
Confidence            65             99999987652    22222334567788 999999988877665    77888775554 3334


Q ss_pred             ccCCCceeEEEe
Q psy1859         148 HRYDTGITSLCF  159 (162)
Q Consensus       148 ~~~~~~v~~v~~  159 (162)
                      ..+...+....|
T Consensus       268 ~~~~~~~~~~~~  279 (695)
T 2bkl_A          268 VKGVGAKYEVHA  279 (695)
T ss_dssp             EECSSCCEEEEE
T ss_pred             ecCCCceEEEEe
Confidence            444444454444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.23  E-value=2.3e-09  Score=71.19  Aligned_cols=131  Identities=8%  Similarity=-0.072  Sum_probs=88.2

Q ss_pred             cEEEEEEeeCCC-eEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          15 QTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        15 ~~~~i~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      ....++|+|+++ .++++..++.|..  |+....    ...+..+.         ..+.+++++|+++++++...++.|.
T Consensus        29 ~~eg~~~d~~g~~l~~~~~~~~~i~~--~~~~~~----~~~~~~~~---------~~~~~l~~~~dg~l~v~~~~~~~i~   93 (296)
T 3e5z_A           29 WTEGPVYVPARSAVIFSDVRQNRTWA--WSDDGQ----LSPEMHPS---------HHQNGHCLNKQGHLIACSHGLRRLE   93 (296)
T ss_dssp             SEEEEEEEGGGTEEEEEEGGGTEEEE--EETTSC----EEEEESSC---------SSEEEEEECTTCCEEEEETTTTEEE
T ss_pred             cccCCeEeCCCCEEEEEeCCCCEEEE--EECCCC----eEEEECCC---------CCcceeeECCCCcEEEEecCCCeEE
Confidence            357899999998 6777788888887  555442    11222222         2588999999999888887789999


Q ss_pred             EEeCCCccceeeeeec----ccceeEE-EcCCCCEEEE----ec-------------CCCeEEEEeCCCceeeeeeccCC
Q psy1859          94 IWDGFNKKRLCQFHRY----DTGITSL-FHQEYNTFAT----GG-------------SDGYVNIWDGFNKKRLCQFHRYD  151 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~----~~~v~~~-~~~~~~~l~~----~~-------------~d~~i~iwd~~~~~~~~~~~~~~  151 (162)
                      +||..+++........    ...+..+ ++|+|+++++    +.             ..+.|..++.. ++ +..+..+.
T Consensus        94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~  171 (296)
T 3e5z_A           94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDR  171 (296)
T ss_dssp             EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCC
T ss_pred             EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCC
Confidence            9999777643332221    1235568 9999998887    33             13466666665 44 33344455


Q ss_pred             CceeEEEecCC
Q psy1859         152 TGITSLCFSYD  162 (162)
Q Consensus       152 ~~v~~v~~~pd  162 (162)
                      ..+..++|+||
T Consensus       172 ~~~~gi~~s~d  182 (296)
T 3e5z_A          172 VKPNGLAFLPS  182 (296)
T ss_dssp             SSEEEEEECTT
T ss_pred             CCCccEEECCC
Confidence            66788999886

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.23  E-value=2.1e-09  Score=71.59  Aligned_cols=135  Identities=15%  Similarity=0.064  Sum_probs=92.8

Q ss_pred             cEEEEEEeeCCCeEEEEcC---------CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEE-E
Q psy1859          15 QTRCIKCFPNKQGYVLSSI---------EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF-A   84 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~---------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~   84 (162)
                      ....+++.|+|+++++...         .....||.++...  . .... ....         .....++|+|+++.+ +
T Consensus        99 ~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g--~-~~~~-~~~~---------~~pngi~~spdg~~lyv  165 (297)
T 3g4e_A           99 RFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH--H-VKKY-FDQV---------DISNGLDWSLDHKIFYY  165 (297)
T ss_dssp             EEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS--C-EEEE-EEEE---------SBEEEEEECTTSCEEEE
T ss_pred             CCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC--C-EEEE-eecc---------ccccceEEcCCCCEEEE
Confidence            4577899999997665432         2345677777542  1 1111 1111         146789999999755 5


Q ss_pred             EecCCCeEEEEeC--CCccc-----eeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeE
Q psy1859          85 TGGSDGYVNIWDG--FNKKR-----LCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITS  156 (162)
Q Consensus        85 ~~~~d~~v~~wd~--~~~~~-----~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  156 (162)
                      +.+.++.|.+|++  .++..     ...+.........+ ++++|.+.++....+.|..||..+++.+..+..+...+++
T Consensus       166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~  245 (297)
T 3g4e_A          166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTS  245 (297)
T ss_dssp             EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEE
T ss_pred             ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceE
Confidence            6667899999987  34432     11222233456778 9999988888777889999999889988888877778999


Q ss_pred             EEec-CC
Q psy1859         157 LCFS-YD  162 (162)
Q Consensus       157 v~~~-pd  162 (162)
                      ++|. ||
T Consensus       246 ~~f~g~d  252 (297)
T 3g4e_A          246 CCFGGKN  252 (297)
T ss_dssp             EEEESGG
T ss_pred             EEEeCCC
Confidence            9997 54

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.23  E-value=1e-10  Score=78.77  Aligned_cols=131  Identities=10%  Similarity=0.014  Sum_probs=93.0

Q ss_pred             EEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEE
Q psy1859          16 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW   95 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~w   95 (162)
                      +.+++|++++..++..+.++.+..|  .     ......+..+..         .+.+++|+|++++++++..++.|.+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~---------~~~~~~~~~~g~l~~~~~~~~~i~~~   71 (333)
T 2dg1_A            8 LPTLFYSGKSNSAVPIISESELQTI--T-----AEPWLEISKKGL---------QLEGLNFDRQGQLFLLDVFEGNIFKI   71 (333)
T ss_dssp             CCBCCSCGGGGCSSCCCCGGGSCEE--E-----CEEEEEEESSCC---------CEEEEEECTTSCEEEEETTTCEEEEE
T ss_pred             cceeeecCCccceeEEeecccCccc--c-----cceeEEEeccCc---------cccCcEECCCCCEEEEECCCCEEEEE
Confidence            5667888887777766777888875  2     112222222221         47899999999988888899999999


Q ss_pred             eCCCccceeeeeecccceeEE-EcCCCCEEEEecCC----CeEEEEeCCCceeeeeec--cCCCceeEEEecCC
Q psy1859          96 DGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSD----GYVNIWDGFNKKRLCQFH--RYDTGITSLCFSYD  162 (162)
Q Consensus        96 d~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~--~~~~~v~~v~~~pd  162 (162)
                      |..+++...........+..+ ++|+|+++++...+    +.|.+||..+++....+.  .+...+.+++++||
T Consensus        72 d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~  145 (333)
T 2dg1_A           72 NPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK  145 (333)
T ss_dssp             CTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTT
T ss_pred             eCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCC
Confidence            998776544333455678889 99999988887666    689999998776443332  23456888888875

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.23  E-value=4.4e-10  Score=83.17  Aligned_cols=135  Identities=10%  Similarity=0.016  Sum_probs=85.6

Q ss_pred             eeCCCeEEEEcCC-Cc--EEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC-----eEE
Q psy1859          22 FPNKQGYVLSSIE-GR--AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG-----YVN   93 (162)
Q Consensus        22 ~~~~~~l~~~~~~-g~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~-----~v~   93 (162)
                      .|+|++++....+ +.  -.+|..+...+..+.+..  ....   ..+|...+..++|||+|++|+.+..++     .|+
T Consensus        80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld--~~~l---~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~  154 (710)
T 2xdw_A           80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLD--PNIL---SDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIK  154 (710)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEEC--GGGG---CTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEE
T ss_pred             EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEEC--HHHh---ccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEE
Confidence            4888887765433 22  245656643322222211  1110   111333688999999999888665433     899


Q ss_pred             EEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCe----------------EEEEeCCCcee----eeeeccCCC
Q psy1859          94 IWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGY----------------VNIWDGFNKKR----LCQFHRYDT  152 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~----------------i~iwd~~~~~~----~~~~~~~~~  152 (162)
                      +||+.+++....... ...+..+ |+|||+.|+.+..++.                |++|++.+++.    +.....+..
T Consensus       155 v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~  233 (710)
T 2xdw_A          155 FMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPK  233 (710)
T ss_dssp             EEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred             EEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCe
Confidence            999999876653222 2235678 9999999998887655                99999987752    222223455


Q ss_pred             ceeEEEecCC
Q psy1859         153 GITSLCFSYD  162 (162)
Q Consensus       153 ~v~~v~~~pd  162 (162)
                      .+.++.|+||
T Consensus       234 ~~~~~~~SpD  243 (710)
T 2xdw_A          234 WMGGAELSDD  243 (710)
T ss_dssp             CEEEEEECTT
T ss_pred             EEEEEEEcCC
Confidence            6788999987

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.20  E-value=4e-09  Score=70.03  Aligned_cols=138  Identities=9%  Similarity=-0.079  Sum_probs=87.0

Q ss_pred             cccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeee-eeeeeccCcccceeceEEEEecCCCCEEEE----ec
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAF-KCHRIKEDGIEKIYPVNAISFHQEYNTFAT----GG   87 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~----~~   87 (162)
                      ...+..++++|+++.+++...++.|.+  |+..++........ .....        ..+..++++|+|+++++    ++
T Consensus        68 ~~~~~~l~~~~dg~l~v~~~~~~~i~~--~d~~~g~~~~~~~~~~~~~~--------~~~~~i~~d~~G~l~vtd~~~g~  137 (296)
T 3e5z_A           68 SHHQNGHCLNKQGHLIACSHGLRRLER--QREPGGEWESIADSFEGKKL--------NSPNDVCLAPDGSLWFSDPTYGI  137 (296)
T ss_dssp             CSSEEEEEECTTCCEEEEETTTTEEEE--ECSTTCCEEEEECEETTEEC--------CCCCCEEECTTSCEEEEECSHHH
T ss_pred             CCCcceeeECCCCcEEEEecCCCeEEE--EcCCCCcEEEEeeccCCCCC--------CCCCCEEECCCCCEEEECCcccc
Confidence            345678999999998777766788888  55433212221110 11111        14678999999998887    33


Q ss_pred             -------------CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCC-Ccee---eeeecc
Q psy1859          88 -------------SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGF-NKKR---LCQFHR  149 (162)
Q Consensus        88 -------------~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~-~~~~---~~~~~~  149 (162)
                                   ..+.|..++.. ++ +..+.........+ |+|+++.+++...++.|.+|++. +++.   ...+..
T Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~  215 (296)
T 3e5z_A          138 DKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTV  215 (296)
T ss_dssp             HCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECC
T ss_pred             ccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeC
Confidence                         13467677665 33 33344444566788 99999988777788999999986 4443   223323


Q ss_pred             CCCceeEEEecCC
Q psy1859         150 YDTGITSLCFSYD  162 (162)
Q Consensus       150 ~~~~v~~v~~~pd  162 (162)
                      +...+.++++++|
T Consensus       216 ~~~~p~~i~~d~~  228 (296)
T 3e5z_A          216 EPGKTDGLRVDAG  228 (296)
T ss_dssp             SSSCCCSEEEBTT
T ss_pred             CCCCCCeEEECCC
Confidence            4445667777664

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.20  E-value=2.3e-09  Score=70.06  Aligned_cols=136  Identities=8%  Similarity=-0.046  Sum_probs=91.5

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      .....+++.++++.+++...++.|.+|  +..+  ..........         ...+.+++++|+++++++...++.|.
T Consensus       108 ~~p~~i~~~~~g~l~v~~~~~~~i~~~--~~~~--~~~~~~~~~~---------~~~p~~i~~~~~g~l~v~~~~~~~i~  174 (270)
T 1rwi_B          108 NYPEGLAVDTQGAVYVADRGNNRVVKL--AAGS--KTQTVLPFTG---------LNDPDGVAVDNSGNVYVTDTDNNRVV  174 (270)
T ss_dssp             SSEEEEEECTTCCEEEEEGGGTEEEEE--CTTC--CSCEECCCCS---------CCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred             CCCcceEECCCCCEEEEECCCCEEEEE--ECCC--ceeEeecccc---------CCCceeEEEeCCCCEEEEECCCCEEE
Confidence            346789999999877777777888874  4433  1111111111         11467899999999888888889999


Q ss_pred             EEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          94 IWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +||................+..+ ++++|.++++...++.|.+||............+-..+.+++++||
T Consensus       175 ~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~  244 (270)
T 1rwi_B          175 KLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD  244 (270)
T ss_dssp             EECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTT
T ss_pred             EEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCC
Confidence            99987654433222223567788 9999987777778889999998665433222223356888988875

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.19  E-value=3.5e-09  Score=69.84  Aligned_cols=133  Identities=8%  Similarity=0.016  Sum_probs=90.2

Q ss_pred             cEEEEEEe-eCCCeEEEEcC-CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeE
Q psy1859          15 QTRCIKCF-PNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV   92 (162)
Q Consensus        15 ~~~~i~~~-~~~~~l~~~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v   92 (162)
                      ....+++. ++++.+++... ++.|.+|  +...   +....+...        +...+.+++++|+++++++...++.|
T Consensus        78 ~p~~i~~~~~~g~l~v~~~~~~~~i~~~--d~~g---~~~~~~~~~--------~~~~~~~i~~~~~g~l~v~~~~~~~i  144 (286)
T 1q7f_A           78 YPNRVAVVRNSGDIIVTERSPTHQIQIY--NQYG---QFVRKFGAT--------ILQHPRGVTVDNKGRIIVVECKVMRV  144 (286)
T ss_dssp             SEEEEEEETTTTEEEEEECGGGCEEEEE--CTTS---CEEEEECTT--------TCSCEEEEEECTTSCEEEEETTTTEE
T ss_pred             CceEEEEEcCCCeEEEEcCCCCCEEEEE--CCCC---cEEEEecCc--------cCCCceEEEEeCCCCEEEEECCCCEE
Confidence            45778885 56666666533 6778874  4322   222222111        11257899999999988888889999


Q ss_pred             EEEeCCCccceeeee--ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccC--CCceeEEEecCC
Q psy1859          93 NIWDGFNKKRLCQFH--RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY--DTGITSLCFSYD  162 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~v~~~pd  162 (162)
                      .+||.. ++.+..+.  .+...+..+ ++|+|+++++...++.|++||. +++.+..+..+  ...+.+++++||
T Consensus       145 ~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~  217 (286)
T 1q7f_A          145 IIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSN  217 (286)
T ss_dssp             EEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTT
T ss_pred             EEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCC
Confidence            999964 55555543  233457788 9999998888888999999998 45555555433  356888998875

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.19  E-value=2.3e-09  Score=77.50  Aligned_cols=111  Identities=16%  Similarity=0.076  Sum_probs=82.3

Q ss_pred             eCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCC--Cc
Q psy1859          23 PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF--NK  100 (162)
Q Consensus        23 ~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~--~~  100 (162)
                      |.+..+++...++.|.+  +|..+  .+.+..+....          .+..+.|+|+++++++++.++.|.+||+.  +.
T Consensus       165 ~~~~~~V~~~~~~~V~v--iD~~t--~~v~~~i~~g~----------~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~  230 (567)
T 1qks_A          165 LENLFSVTLRDAGQIAL--IDGST--YEIKTVLDTGY----------AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP  230 (567)
T ss_dssp             GGGEEEEEETTTTEEEE--EETTT--CCEEEEEECSS----------CEEEEEECTTSCEEEEEETTSEEEEEETTSSSC
T ss_pred             CCceEEEEeCCCCeEEE--EECCC--CeEEEEEeCCC----------CccceEECCCCCEEEEEcCCCeEEEEECCCCCC
Confidence            34455667778899998  56554  33443433222          36789999999999999999999999996  67


Q ss_pred             cceeeeeecccceeEE-Ec----CCCCEEEEec-CCCeEEEEeCCCceeeeeec
Q psy1859         101 KRLCQFHRYDTGITSL-FH----QEYNTFATGG-SDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus       101 ~~~~~~~~~~~~v~~~-~~----~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~  148 (162)
                      +.+.++.. ......+ |+    |||+++++++ .++++.++|..+.+.+.++.
T Consensus       231 ~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~  283 (567)
T 1qks_A          231 TTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS  283 (567)
T ss_dssp             CEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred             cEeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEe
Confidence            77777664 3345677 99    6999988877 45899999999988777654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.17  E-value=7.5e-09  Score=74.85  Aligned_cols=122  Identities=11%  Similarity=-0.036  Sum_probs=85.2

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEec----CCCCEEEEec-CC
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH----QEYNTFATGG-SD   89 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----p~~~~l~~~~-~d   89 (162)
                      ....+.++|+++++++++.++.|.+|+....+  .+.+..+....          ....++|+    |+|++++++. .+
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t--~~~v~~i~~G~----------~P~~ia~s~~~~pDGk~l~v~n~~~  265 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKE--PTTVAEIKIGS----------EARSIETSKMEGWEDKYAIAGAYWP  265 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSS--CCEEEEEECCS----------EEEEEEECCSTTCTTTEEEEEEEET
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCC--CcEeEEEecCC----------CCceeEEccccCCCCCEEEEEEccC
Confidence            34578999999999999999999995543123  33333333222          35789999    6998777665 56


Q ss_pred             CeEEEEeCCCccceeeeeec-------------------------------------------------------cccee
Q psy1859          90 GYVNIWDGFNKKRLCQFHRY-------------------------------------------------------DTGIT  114 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~-------------------------------------------------------~~~v~  114 (162)
                      +.+.++|..+.+.+..+...                                                       .....
T Consensus       266 ~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~  345 (567)
T 1qks_A          266 PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH  345 (567)
T ss_dssp             TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEE
T ss_pred             CeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecccccc
Confidence            99999998877665544310                                                       01223


Q ss_pred             EE-EcCCCCEEEEec-CCCeEEEEeCCCceeeeeec
Q psy1859         115 SL-FHQEYNTFATGG-SDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus       115 ~~-~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~  148 (162)
                      .+ |+|+|++++++. .++.|.++|+.+++.+..+.
T Consensus       346 d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~  381 (567)
T 1qks_A          346 DGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  381 (567)
T ss_dssp             EEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             CceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe
Confidence            56 899999887665 67899999999998766554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.15  E-value=3.7e-09  Score=71.45  Aligned_cols=139  Identities=10%  Similarity=0.019  Sum_probs=90.6

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec-CCCeE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-SDGYV   92 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~v   92 (162)
                      .....++++++++.+++...++.|.+  +|..+  .+....+.....    .+.......+++ .+++++++.. .++.|
T Consensus        84 ~~p~~i~~~~~g~lyv~~~~~~~v~~--iD~~t--~~~~~~i~~g~~----~~~~~~p~~i~~-~~~~lyv~~~~~~~~v  154 (328)
T 3dsm_A           84 TSPRYIHFLSDEKAYVTQIWDYRIFI--INPKT--YEITGYIECPDM----DMESGSTEQMVQ-YGKYVYVNCWSYQNRI  154 (328)
T ss_dssp             SSEEEEEEEETTEEEEEEBSCSEEEE--EETTT--TEEEEEEECTTC----CTTTCBCCCEEE-ETTEEEEEECTTCCEE
T ss_pred             CCCcEEEEeCCCeEEEEECCCCeEEE--EECCC--CeEEEEEEcCCc----cccCCCcceEEE-ECCEEEEEcCCCCCEE
Confidence            44577899998855455447888888  55554  333222221110    000012445666 4445555554 48999


Q ss_pred             EEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCC----------CeEEEEeCCCceeeeeeccC-CCceeEEEec
Q psy1859          93 NIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSD----------GYVNIWDGFNKKRLCQFHRY-DTGITSLCFS  160 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~~~-~~~v~~v~~~  160 (162)
                      .++|..+++.+..+.. ......+ ++|+|++++++..+          +.|.++|..+++....+... ...+..++|+
T Consensus       155 ~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~  233 (328)
T 3dsm_A          155 LKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLN  233 (328)
T ss_dssp             EEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEEC
T ss_pred             EEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEe
Confidence            9999999887777654 2344567 99999987777655          78999999998877666532 2368899999


Q ss_pred             CC
Q psy1859         161 YD  162 (162)
Q Consensus       161 pd  162 (162)
                      ||
T Consensus       234 ~d  235 (328)
T 3dsm_A          234 GT  235 (328)
T ss_dssp             TT
T ss_pred             cC
Confidence            85

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.14  E-value=1.9e-09  Score=73.87  Aligned_cols=108  Identities=10%  Similarity=-0.031  Sum_probs=76.7

Q ss_pred             CCCeEEEEc------CCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec----------
Q psy1859          24 NKQGYVLSS------IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG----------   87 (162)
Q Consensus        24 ~~~~l~~~~------~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~----------   87 (162)
                      +++++++..      .|+.+.+  ||..+  .+....+.....         +  .++|+|++++++++.          
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v--~D~~t--~~~~~~i~~g~~---------p--~i~~spdg~~lyv~~~~~~~~~~g~   78 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHV--YDYTN--GKFLGMVPTAFN---------G--HVQVSNDGKKIYTMTTYHERITRGK   78 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEE--EETTT--CCEEEEEECCEE---------E--EEEECTTSSEEEEEEEEETTSSSSC
T ss_pred             CCCEEEEECCCCCccccCeEEE--EECCC--CeEEEEecCCCC---------C--ceEECCCCCEEEEEEecccccccCC
Confidence            455555542      3568888  55544  333333333221         3  899999998888775          


Q ss_pred             CCCeEEEEeCCCccceeeeeec------ccceeEE-EcCCCCEEEEecC--CCeEEEEeCCCceeeee
Q psy1859          88 SDGYVNIWDGFNKKRLCQFHRY------DTGITSL-FHQEYNTFATGGS--DGYVNIWDGFNKKRLCQ  146 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~~~~~------~~~v~~~-~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~  146 (162)
                      .++.|.+||..+.+.+..+...      ......+ ++|+|++|+++..  ++.|.+||+.+++.+..
T Consensus        79 ~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~  146 (361)
T 2oiz_A           79 RSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED  146 (361)
T ss_dssp             EEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence            3678999999988887777542      2345677 9999999999874  68999999999988776

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.11  E-value=1.1e-08  Score=68.21  Aligned_cols=135  Identities=7%  Similarity=-0.035  Sum_probs=90.4

Q ss_pred             cEEEEEEeeCCCeEEEEcCCC-------------cEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEec----
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEG-------------RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH----   77 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g-------------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----   77 (162)
                      .+..+++.++++.+++...++             ...||.++... .....   ....         .....++|+    
T Consensus       118 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~---~~~~---------~~~~~i~~~~~~d  184 (314)
T 1pjx_A          118 GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQV---DTAF---------QFPNGIAVRHMND  184 (314)
T ss_dssp             CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEE---EEEE---------SSEEEEEEEECTT
T ss_pred             CCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCC-CEEEe---ccCC---------CCcceEEEecccC
Confidence            367899999998777765442             24565576542 11111   1111         136788999    


Q ss_pred             CCCCE-EEEecCCCeEEEEeCC-Cccc-----eeeeeecc-cceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859          78 QEYNT-FATGGSDGYVNIWDGF-NKKR-----LCQFHRYD-TGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        78 p~~~~-l~~~~~d~~v~~wd~~-~~~~-----~~~~~~~~-~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      |+++. +++...++.|.+||.. +++.     ...+..+. .....+ ++++|.++++...++.|.+||..+++.+..+.
T Consensus       185 ~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~  264 (314)
T 1pjx_A          185 GRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR  264 (314)
T ss_dssp             SCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE
T ss_pred             CCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe
Confidence            99854 5555678999999976 3331     12222222 456678 99999988887788899999998777666666


Q ss_pred             cCCCceeEEEecCC
Q psy1859         149 RYDTGITSLCFSYD  162 (162)
Q Consensus       149 ~~~~~v~~v~~~pd  162 (162)
                      .+...+.+++|+||
T Consensus       265 ~~~~~~~~i~~~~d  278 (314)
T 1pjx_A          265 CPFEKPSNLHFKPQ  278 (314)
T ss_dssp             CSSSCEEEEEECTT
T ss_pred             CCCCCceeEEECCC
Confidence            66678899999875

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.11  E-value=6e-09  Score=68.05  Aligned_cols=134  Identities=9%  Similarity=0.018  Sum_probs=88.0

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEE
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI   94 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~   94 (162)
                      ....+++.++++.+++.. ++.|.+  ++...  ... ..+....        ...+.+++++|+++++++...++.|.+
T Consensus        68 ~p~~i~~~~~g~l~v~~~-~~~i~~--~d~~~--~~~-~~~~~~~--------~~~p~~i~~~~~g~l~v~~~~~~~i~~  133 (270)
T 1rwi_B           68 QPQGLAVDGAGTVYVTDF-NNRVVT--LAAGS--NNQ-TVLPFDG--------LNYPEGLAVDTQGAVYVADRGNNRVVK  133 (270)
T ss_dssp             SCCCEEECTTCCEEEEET-TTEEEE--ECTTC--SCC-EECCCCS--------CSSEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred             CcceeEECCCCCEEEEcC-CCEEEE--EeCCC--ceE-eeeecCC--------cCCCcceEECCCCCEEEEECCCCEEEE
Confidence            456788999988666655 777777  55433  111 1111111        114789999999998888888899999


Q ss_pred             EeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          95 WDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        95 wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |+..+.............+..+ ++++|+++++...++.|.+||............+...+.+++++|+
T Consensus       134 ~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~  202 (270)
T 1rwi_B          134 LAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA  202 (270)
T ss_dssp             ECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTT
T ss_pred             EECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCC
Confidence            9865543322222223356778 9999997777777889999999766544332233356788888764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.10  E-value=2.2e-08  Score=66.10  Aligned_cols=125  Identities=7%  Similarity=-0.073  Sum_probs=89.8

Q ss_pred             ccEEEEEEeeCCCeEEEEcC-CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV   92 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v   92 (162)
                      .++.++.+.++|+.+++.+. .+.+..  ++..   .+.+..+......   ..+......+++.++|+++++...++.|
T Consensus        77 ~~~~~~~~~~dG~~lv~~~~~~~~v~~--vd~~---Gk~l~~~~~~~~~---~~~~~~~~~v~~~~~G~~lv~~~~~~~v  148 (276)
T 3no2_A           77 CEMQTARILPDGNALVAWCGHPSTILE--VNMK---GEVLSKTEFETGI---ERPHAQFRQINKNKKGNYLVPLFATSEV  148 (276)
T ss_dssp             CEEEEEEECTTSCEEEEEESTTEEEEE--ECTT---SCEEEEEEECCSC---SSGGGSCSCCEECTTSCEEEEETTTTEE
T ss_pred             ccccccEECCCCCEEEEecCCCCEEEE--EeCC---CCEEEEEeccCCC---CcccccccCceECCCCCEEEEecCCCEE
Confidence            45677888999999888776 554444  6653   2333333221110   0011235566788999999999999999


Q ss_pred             EEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859          93 NIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      ..||.. ++.+.++... .....+ ..++|.+++++..++.|..+|..+++.+.++.
T Consensus       149 ~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          149 REIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             EEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             EEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            999998 8888887654 345566 88999999999888899999999899888775

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.09  E-value=3.5e-09  Score=78.80  Aligned_cols=129  Identities=7%  Similarity=-0.049  Sum_probs=79.4

Q ss_pred             cEEEEEEeeCCCeEEEEcCC-Cc--EEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC-
Q psy1859          15 QTRCIKCFPNKQGYVLSSIE-GR--AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG-   90 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~-g~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~-   90 (162)
                      .+..++|||||++++.++.+ |.  ..||.+|..++..  . .......         .+..++|+|+ +.|+.++.++ 
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~--~-~~~~~~~---------~~~~~~wspD-~~l~~~~~~~~  230 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKP--L-ADELKWV---------KFSGLAWLGN-DALLYSRFAEP  230 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCE--E-EEEEEEE---------ESCCCEESTT-SEEEEEECCCC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC--C-CccCCCc---------eeccEEEECC-CEEEEEEecCc
Confidence            46678999999999887543 33  2333355544222  1 1111111         2468999999 8888777654 


Q ss_pred             -------------eEEEEeCCCccc--eeeeee--cccceeEE-EcCCCCEEEEecCC-----CeEEEEeCCCc--eeee
Q psy1859          91 -------------YVNIWDGFNKKR--LCQFHR--YDTGITSL-FHQEYNTFATGGSD-----GYVNIWDGFNK--KRLC  145 (162)
Q Consensus        91 -------------~v~~wd~~~~~~--~~~~~~--~~~~v~~~-~~~~~~~l~~~~~d-----~~i~iwd~~~~--~~~~  145 (162)
                                   .|++|++.++..  ...+..  +...+..+ |+|||++++..+.+     ..|++||+.++  +...
T Consensus       231 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~  310 (741)
T 1yr2_A          231 KEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT  310 (741)
T ss_dssp             --------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred             ccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence                         388999977642  122222  22346778 99999988887654     38999999876  3134


Q ss_pred             eeccCCCceeE
Q psy1859         146 QFHRYDTGITS  156 (162)
Q Consensus       146 ~~~~~~~~v~~  156 (162)
                      .+..+...+..
T Consensus       311 ~l~~~~~~~~~  321 (741)
T 1yr2_A          311 ALIPDLKAQWD  321 (741)
T ss_dssp             EEECSSSSCEE
T ss_pred             EecCCCCceEE
Confidence            44444443333

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.09  E-value=4.8e-08  Score=65.90  Aligned_cols=133  Identities=11%  Similarity=0.033  Sum_probs=87.5

Q ss_pred             cEEEEEEeeCCCeEEEEcCC----CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEE-EEecCC
Q psy1859          15 QTRCIKCFPNKQGYVLSSIE----GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF-ATGGSD   89 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~d   89 (162)
                      .+..++++|+|+++++...+    +...||.++ .. ....   +.....         ....++|+|+++.+ ++.+.+
T Consensus       135 ~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g-~~~~---~~~~~~---------~~~~i~~s~dg~~lyv~~~~~  200 (326)
T 2ghs_A          135 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KG-KVTK---LFADIS---------IPNSICFSPDGTTGYFVDTKV  200 (326)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TT-EEEE---EEEEES---------SEEEEEECTTSCEEEEEETTT
T ss_pred             CCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CC-cEEE---eeCCCc---------ccCCeEEcCCCCEEEEEECCC
Confidence            46789999999876654321    345666676 22 1111   111111         36789999999765 455667


Q ss_pred             CeEEEEeCC--Cc-cce--eee---eecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEec
Q psy1859          90 GYVNIWDGF--NK-KRL--CQF---HRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS  160 (162)
Q Consensus        90 ~~v~~wd~~--~~-~~~--~~~---~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  160 (162)
                      +.|.+||+.  ++ +..  ..+   .........+ ++++|.+.++...++.|..||. +++.+..+..+...+++++|+
T Consensus       201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~  279 (326)
T 2ghs_A          201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI  279 (326)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred             CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEe
Confidence            899999986  45 321  112   1123445677 9999988777767789999998 567677776666679999997


Q ss_pred             -CC
Q psy1859         161 -YD  162 (162)
Q Consensus       161 -pd  162 (162)
                       ||
T Consensus       280 g~d  282 (326)
T 2ghs_A          280 GPD  282 (326)
T ss_dssp             STT
T ss_pred             cCC
Confidence             64

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.08  E-value=1.5e-08  Score=66.95  Aligned_cols=129  Identities=7%  Similarity=-0.079  Sum_probs=90.7

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC-CCeEE
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-DGYVN   93 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~v~   93 (162)
                      .+.++.+.|+|+.++  +.++.+..  +|. +  .+.+..+.....        ..+.++.+.|+|+.+++.+. ++.+.
T Consensus        38 ~~~~~~~~pdG~ilv--s~~~~V~~--~d~-~--G~~~W~~~~~~~--------~~~~~~~~~~dG~~lv~~~~~~~~v~  102 (276)
T 3no2_A           38 ECNSVAATKAGEILF--SYSKGAKM--ITR-D--GRELWNIAAPAG--------CEMQTARILPDGNALVAWCGHPSTIL  102 (276)
T ss_dssp             CCCEEEECTTSCEEE--ECBSEEEE--ECT-T--SCEEEEEECCTT--------CEEEEEEECTTSCEEEEEESTTEEEE
T ss_pred             CCcCeEECCCCCEEE--eCCCCEEE--ECC-C--CCEEEEEcCCCC--------ccccccEECCCCCEEEEecCCCCEEE
Confidence            467888999999888  34666666  665 3  445555554311        14778899999999998877 88888


Q ss_pred             EEeCCCccceeeeeec------ccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          94 IWDGFNKKRLCQFHRY------DTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~------~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      .+|. +++.+..+...      ......+ +.++|.++++...++.|..||.. |+.+.++... ..+.++.+.+
T Consensus       103 ~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~  174 (276)
T 3no2_A          103 EVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLD  174 (276)
T ss_dssp             EECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECT
T ss_pred             EEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcC
Confidence            8886 67766665421      1234445 78899999999999999999997 8888887643 2344444443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.08  E-value=8.3e-08  Score=63.31  Aligned_cols=133  Identities=6%  Similarity=-0.025  Sum_probs=89.6

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      ..+.++++.++++.+++...++.+.+|  +...  ....+.....         ...+.++++++++.++++...++.|.
T Consensus        15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~--d~~~--~~~~~~~~~~---------~~~~~~i~~~~~g~l~v~~~~~~~i~   81 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQHKANMISCI--NLDG--KITEYPLPTP---------DAKVMCLTISSDGEVWFTENAANKIG   81 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEE--CTTC--CEEEEECSST---------TCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             CCccceEECCCCCEEEEecCCCcEEEE--cCCC--CeEEecCCcc---------cCceeeEEECCCCCEEEeCCCCCeEE
Confidence            467899999999977776667888884  4432  1111111111         12588999999999888887789999


Q ss_pred             EEeCCCccceeeee--ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeee-eccCCCceeEEEecCC
Q psy1859          94 IWDGFNKKRLCQFH--RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQ-FHRYDTGITSLCFSYD  162 (162)
Q Consensus        94 ~wd~~~~~~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~v~~~pd  162 (162)
                      .||.. ++ ...+.  .....+..+ ++++|.++++...++.|..||. +++.... .......+.++++.|+
T Consensus        82 ~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~  151 (299)
T 2z2n_A           82 RITKK-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSD  151 (299)
T ss_dssp             EECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred             EECCC-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCC
Confidence            99986 32 22222  234467788 9999998888878889999998 5543322 2223446778887764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.02  E-value=7.7e-09  Score=76.98  Aligned_cols=135  Identities=10%  Similarity=-0.076  Sum_probs=82.5

Q ss_pred             EeeCCCeEEEEcCCCc---EEEEEecCC---cccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC-----
Q psy1859          21 CFPNKQGYVLSSIEGR---AAVEYLDTG---PEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD-----   89 (162)
Q Consensus        21 ~~~~~~~l~~~~~~g~---i~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-----   89 (162)
                      .+|+|++++....++.   -.+|..+..   .+..+.+.....  .   ..+|...+..++|||+|++|+.++.+     
T Consensus       114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~--l---~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~  188 (741)
T 1yr2_A          114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNT--W---AKDGATALDAWAASDDGRLLAYSVQDGGSDW  188 (741)
T ss_dssp             CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGG--C---C----EEEEEEEECTTSSEEEEEEEETTCSE
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHH--h---ccCCCEEEEeEEECCCCCEEEEEEcCCCCce
Confidence            4589998877654432   566766643   221222211100  0   00122368899999999988876543     


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCe--------------EEEEeCCCcee--eeeec--cC
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGY--------------VNIWDGFNKKR--LCQFH--RY  150 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~--------------i~iwd~~~~~~--~~~~~--~~  150 (162)
                      ..|++||+.+++.+... .....+..+ |+|| +.|+.+..+..              |++|++.++..  ...+.  .+
T Consensus       189 ~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~  266 (741)
T 1yr2_A          189 RTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL  266 (741)
T ss_dssp             EEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC
T ss_pred             EEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC
Confidence            46999999998765431 122223466 9999 98888776543              89999977652  22222  33


Q ss_pred             CCceeEEEecCC
Q psy1859         151 DTGITSLCFSYD  162 (162)
Q Consensus       151 ~~~v~~v~~~pd  162 (162)
                      ...+.++.|+||
T Consensus       267 ~~~~~~~~~SpD  278 (741)
T 1yr2_A          267 PKRGHGASVSSD  278 (741)
T ss_dssp             TTCEEEEEECTT
T ss_pred             CeEEEEEEECCC
Confidence            345888999987

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.99  E-value=1.7e-07  Score=61.85  Aligned_cols=134  Identities=6%  Similarity=-0.006  Sum_probs=89.7

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      ..+..+++.++++.+++...++.+..  ++...  ....+.+...         ...+.+++++|++.++++...++.|.
T Consensus        57 ~~~~~i~~~~~g~l~v~~~~~~~i~~--~~~~g--~~~~~~~~~~---------~~~~~~i~~~~~g~l~v~~~~~~~i~  123 (299)
T 2z2n_A           57 AKVMCLTISSDGEVWFTENAANKIGR--ITKKG--IIKEYTLPNP---------DSAPYGITEGPNGDIWFTEMNGNRIG  123 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEE--ECTTS--CEEEEECSST---------TCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             CceeeEEECCCCCEEEeCCCCCeEEE--ECCCC--cEEEEeCCCc---------CCCceeeEECCCCCEEEEecCCceEE
Confidence            45678899999988777766777777  55432  1111111111         12578999999999888888889999


Q ss_pred             EEeCCCcccee-eeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeee-eccCCCceeEEEecCC
Q psy1859          94 IWDGFNKKRLC-QFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQ-FHRYDTGITSLCFSYD  162 (162)
Q Consensus        94 ~wd~~~~~~~~-~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~v~~~pd  162 (162)
                      .||. +++... ........+..+ ++++|.++++...++.|..||. +++.... .......+.+++++++
T Consensus       124 ~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~  193 (299)
T 2z2n_A          124 RITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGND  193 (299)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred             EECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCC
Confidence            9998 443322 122234557788 9999988888777889999999 6654332 2233445778888764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.98  E-value=1.5e-08  Score=69.79  Aligned_cols=114  Identities=12%  Similarity=0.012  Sum_probs=82.7

Q ss_pred             EEeeCCCeEEEEcC-----CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec-------
Q psy1859          20 KCFPNKQGYVLSSI-----EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-------   87 (162)
Q Consensus        20 ~~~~~~~~l~~~~~-----~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-------   87 (162)
                      ...|+++.+++...     ++.+.+  +|..+  .+.+..+.....         +  .++++|+++.+.+++       
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~V--iD~~t--~~v~~~I~vG~~---------P--~va~spDG~~lyVan~~~~r~~  103 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFV--IDGEA--GRVIGMIDGGFL---------P--NPVVADDGSFIAHASTVFSRIA  103 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEE--EETTT--TEEEEEEEECSS---------C--EEEECTTSSCEEEEEEEEEETT
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEE--EECCC--CeEEEEEECCCC---------C--cEEECCCCCEEEEEcccccccc
Confidence            34688888887754     466776  77665  444444433221         3  499999998776654       


Q ss_pred             ---CCCeEEEEeCCCccceeeeeecc-------cceeEE-EcCCCCEEEEecC--CCeEEEEeCCCceeeeeec
Q psy1859          88 ---SDGYVNIWDGFNKKRLCQFHRYD-------TGITSL-FHQEYNTFATGGS--DGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        88 ---~d~~v~~wd~~~~~~~~~~~~~~-------~~v~~~-~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~  148 (162)
                         .++.|.+||..+.+.+..+....       .....+ |+|||++++++..  ++.|.++|+.+++.+.++.
T Consensus       104 ~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~  177 (386)
T 3sjl_D          104 RGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD  177 (386)
T ss_dssp             EEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             cCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence               36789999999998888775422       235567 9999999988864  6899999999999887775

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.94  E-value=1.4e-07  Score=63.75  Aligned_cols=129  Identities=11%  Similarity=-0.047  Sum_probs=84.7

Q ss_pred             EEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEE
Q psy1859          16 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW   95 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~w   95 (162)
                      ...+++. +++.+++...++.|.+  +|..+  .+.+..+....          ....++++++++++++...++.|.+|
T Consensus        46 ~~~i~~~-~~~lyv~~~~~~~v~v--iD~~t--~~~~~~i~~~~----------~p~~i~~~~~g~lyv~~~~~~~v~~i  110 (328)
T 3dsm_A           46 AQSMVIR-DGIGWIVVNNSHVIFA--IDINT--FKEVGRITGFT----------SPRYIHFLSDEKAYVTQIWDYRIFII  110 (328)
T ss_dssp             EEEEEEE-TTEEEEEEGGGTEEEE--EETTT--CCEEEEEECCS----------SEEEEEEEETTEEEEEEBSCSEEEEE
T ss_pred             ceEEEEE-CCEEEEEEcCCCEEEE--EECcc--cEEEEEcCCCC----------CCcEEEEeCCCeEEEEECCCCeEEEE
Confidence            4556663 4556666677788998  56554  33333332221          47889999988666665589999999


Q ss_pred             eCCCccceeeeeecc-----cceeEE-EcCCCCEEEEec--CCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          96 DGFNKKRLCQFHRYD-----TGITSL-FHQEYNTFATGG--SDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        96 d~~~~~~~~~~~~~~-----~~v~~~-~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |..+++....+....     .....+ +  ++..++++.  .++.|.++|+.+++.+.++... .....++++||
T Consensus       111 D~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~d  182 (328)
T 3dsm_A          111 NPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKY  182 (328)
T ss_dssp             ETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTT
T ss_pred             ECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCC
Confidence            999888776665332     144556 7  344444444  4889999999999887776532 23456666664

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.88  E-value=2.8e-07  Score=62.55  Aligned_cols=128  Identities=11%  Similarity=0.012  Sum_probs=82.5

Q ss_pred             ccEEEEEEeeCCCeEEEEc--CCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC---
Q psy1859          14 FQTRCIKCFPNKQGYVLSS--IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS---   88 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~--~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---   88 (162)
                      .....++++++++.+++..  .++.++||.++  +  .+ ...+....  .....+...+.+++++++++++++-..   
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~--~--g~-~~~~p~~~--~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~   89 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT--Q--DG-LIPFPPQS--GNAIITFDTVLGIKSDGNGIVWMLDNGNQS   89 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE--T--TE-EEESCCCC--SSCCCCCSCEEEEEECSSSEEEEEECHHHH
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEEC--C--CC-eecCCCcc--cCcccceeEeeEEEEcCCCcEEEEcCCCCc
Confidence            4567899999999888863  23435666676  2  12 11111100  011123447999999999887776543   


Q ss_pred             --CCeEEEEeCCCccceeeeeec------ccceeEE-EcCCCCEE-EEec---CCCeEEEEeCCCceeeeeec
Q psy1859          89 --DGYVNIWDGFNKKRLCQFHRY------DTGITSL-FHQEYNTF-ATGG---SDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        89 --d~~v~~wd~~~~~~~~~~~~~------~~~v~~~-~~~~~~~l-~~~~---~d~~i~iwd~~~~~~~~~~~  148 (162)
                        +..|.+||+.+++.+..+...      ......+ +++++..+ ++-.   .++.|.+||+.+++..+.+.
T Consensus        90 ~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~  162 (343)
T 2qe8_A           90 KSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ  162 (343)
T ss_dssp             TSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT
T ss_pred             CCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec
Confidence              589999999988766655422      2345788 99865444 4444   57899999998877655543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.85  E-value=1.3e-06  Score=57.54  Aligned_cols=133  Identities=8%  Similarity=-0.038  Sum_probs=89.9

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      ....++++.++++.+++...++.|.+  ++... ... .+.+...         ...+.++++++++.++++...++.|.
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~~v~~--~~~~~-~~~-~~~~~~~---------~~~~~~i~~~~~g~l~v~~~~~~~v~   86 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKANKISS--LDQSG-RIK-EFEVPTP---------DAKVMCLIVSSLGDIWFTENGANKIG   86 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEE--ECTTS-CEE-EEECSST---------TCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             CCcceeeECCCCCEEEEcCCCCeEEE--ECCCC-ceE-EEECCCC---------CCcceeEEECCCCCEEEEecCCCeEE
Confidence            45678999999998887777788888  44432 111 1111111         12588999999999888887789999


Q ss_pred             EEeCCCccceeeee--ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeee-eccCCCceeEEEecCC
Q psy1859          94 IWDGFNKKRLCQFH--RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQ-FHRYDTGITSLCFSYD  162 (162)
Q Consensus        94 ~wd~~~~~~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~v~~~pd  162 (162)
                      .+|.. ++. ..+.  .....+..+ ++++|+++++...++.|..+|.. ++.... +......+.++++.|+
T Consensus        87 ~~d~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~  156 (300)
T 2qc5_A           87 KLSKK-GGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSD  156 (300)
T ss_dssp             EECTT-SCE-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT
T ss_pred             EECCC-CCe-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCC
Confidence            99987 543 2222  233567788 99999988888778899999987 544322 2223446777877664

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.85  E-value=2.2e-07  Score=64.75  Aligned_cols=132  Identities=8%  Similarity=0.013  Sum_probs=82.9

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC--eE
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG--YV   92 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~--~v   92 (162)
                      ....|+++++++.+++...++.|++  ++...  ...........          ... ++|+|+++.|+++..++  .|
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~--id~~~--g~~~~~~~~~~----------~~~-ia~~~~g~~l~~~d~~~~~~I  196 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRL--ISVDD--NKVTTVHPGFK----------GGK-PAVTKDKQRVYSIGWEGTHTV  196 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEE--EETTT--TEEEEEEETCC----------BCB-CEECTTSSEEEEEBSSTTCEE
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEE--EECCC--CEEEEeeccCC----------CCc-eeEecCCCcEEEEecCCCceE
Confidence            3567999999987777777788888  45443  12211111111          234 99999998888887755  88


Q ss_pred             EEEeCCCccceeee----eecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeee----eccCCCce-e-EEEecC
Q psy1859          93 NIWDGFNKKRLCQF----HRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQ----FHRYDTGI-T-SLCFSY  161 (162)
Q Consensus        93 ~~wd~~~~~~~~~~----~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~v-~-~v~~~p  161 (162)
                      .+++...+.....+    ......+..+ ++|+...|+.+..++.|+.||..++.....    ..++...- . .++|+|
T Consensus       197 ~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p  276 (409)
T 3hrp_A          197 YVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF  276 (409)
T ss_dssp             EEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEET
T ss_pred             EEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeC
Confidence            99988765443333    1133456677 999555555577788999999987653222    11222222 3 888887

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.84  E-value=1.6e-06  Score=57.10  Aligned_cols=134  Identities=6%  Similarity=-0.054  Sum_probs=87.9

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      ..+..+++.++++.+++...++.|..  ++...  ....+......         ..+.++++.++++++++...++.|.
T Consensus        62 ~~~~~i~~~~~g~l~v~~~~~~~v~~--~d~~g--~~~~~~~~~~~---------~~~~~i~~~~~g~l~v~~~~~~~i~  128 (300)
T 2qc5_A           62 AKVMCLIVSSLGDIWFTENGANKIGK--LSKKG--GFTEYPLPQPD---------SGPYGITEGLNGDIWFTQLNGDRIG  128 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEE--ECTTS--CEEEEECSSTT---------CCEEEEEECSTTCEEEEETTTTEEE
T ss_pred             CcceeEEECCCCCEEEEecCCCeEEE--ECCCC--CeEEecCCCCC---------CCCccceECCCCCEEEEccCCCeEE
Confidence            45678888898887777666777777  55432  11112111111         2588999999999888887788999


Q ss_pred             EEeCCCcccee-eeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeee-eccCCCceeEEEecCC
Q psy1859          94 IWDGFNKKRLC-QFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQ-FHRYDTGITSLCFSYD  162 (162)
Q Consensus        94 ~wd~~~~~~~~-~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~v~~~pd  162 (162)
                      .+|.. ++... .+......+..+ ++++++++++...++.|..+|. +++.... .......+.+++++++
T Consensus       129 ~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~  198 (300)
T 2qc5_A          129 KLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGND  198 (300)
T ss_dssp             EECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred             EECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCC
Confidence            99987 54332 222234567788 9999997777767889999998 5543321 2223345777777664

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.81  E-value=2.8e-07  Score=68.27  Aligned_cols=128  Identities=9%  Similarity=-0.015  Sum_probs=76.4

Q ss_pred             cEEEEEEeeCCCeEEEEcC-CCc--EEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC-
Q psy1859          15 QTRCIKCFPNKQGYVLSSI-EGR--AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG-   90 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~-~g~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~-   90 (162)
                      .+..++|||||++++.+.. .|.  ..||.+|..++..... .  ....         ....++|+ +++.|+.++.+. 
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~--~~~~---------k~~~~~Ws-Dg~~l~y~~~~~~  196 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P--LKDV---------KFSGISWL-GNEGFFYSSYDKP  196 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E--EEEE---------ESCCCEEE-TTTEEEEEESSCC
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c--cCCc---------eeccEEEe-CCCEEEEEEecCc
Confidence            4667899999999886532 232  3344466554222111 1  1110         13578999 998888877663 


Q ss_pred             ------------eEEEEeCCCccc----eeeeee-cccceeEE-EcCCCCEEEEec----CCCeEEEEeCCCce-eeeee
Q psy1859          91 ------------YVNIWDGFNKKR----LCQFHR-YDTGITSL-FHQEYNTFATGG----SDGYVNIWDGFNKK-RLCQF  147 (162)
Q Consensus        91 ------------~v~~wd~~~~~~----~~~~~~-~~~~v~~~-~~~~~~~l~~~~----~d~~i~iwd~~~~~-~~~~~  147 (162)
                                  .|++|++.++..    +..... +......+ |+|||++++...    ..+.|+++|+.++. ....+
T Consensus       197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l  276 (693)
T 3iuj_A          197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV  276 (693)
T ss_dssp             C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred             ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence                        499999987542    222222 33346677 999999886543    23589999997663 33344


Q ss_pred             ccCCCcee
Q psy1859         148 HRYDTGIT  155 (162)
Q Consensus       148 ~~~~~~v~  155 (162)
                      ..+.....
T Consensus       277 ~~~~~~~~  284 (693)
T 3iuj_A          277 QGDLDADV  284 (693)
T ss_dssp             ECSSSSCE
T ss_pred             eCCCCceE
Confidence            44444333

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.80  E-value=4.2e-07  Score=62.55  Aligned_cols=112  Identities=10%  Similarity=-0.080  Sum_probs=76.2

Q ss_pred             EeeCCCeEEEEcC--CC---cEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec--------
Q psy1859          21 CFPNKQGYVLSSI--EG---RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG--------   87 (162)
Q Consensus        21 ~~~~~~~l~~~~~--~g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~--------   87 (162)
                      ..|++++++++..  ..   .|.+  +|..+  .+.+..+....          .- .++++|+++.+..+.        
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v--~D~~t--~~~~~~i~~g~----------~p-~i~~spDg~~lyv~n~~~~~~~r   92 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWV--LDAGS--GSILGHVNGGF----------LP-NPVAAHSGSEFALASTSFSRIAK   92 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEE--EECCC--CeEEEEecCCC----------CC-CeEECCCCCEEEEEecccccccc
Confidence            3467777766653  23   5566  56544  33333322211          23 899999998888775        


Q ss_pred             --CCCeEEEEeCCCccceeeeeec-------ccceeEE-EcCCCCEEEEecC--CCeEEEEeCCCceeeee-ec
Q psy1859          88 --SDGYVNIWDGFNKKRLCQFHRY-------DTGITSL-FHQEYNTFATGGS--DGYVNIWDGFNKKRLCQ-FH  148 (162)
Q Consensus        88 --~d~~v~~wd~~~~~~~~~~~~~-------~~~v~~~-~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~  148 (162)
                        .++.|.+||..+.+.+..+...       ......+ |+|||++|++++.  ++.|.++| .+++.+.. +.
T Consensus        93 g~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~  165 (373)
T 2mad_H           93 GKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS  165 (373)
T ss_pred             CCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC
Confidence              3678999999988777666432       1234567 9999999998874  57899999 99988777 54

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.80  E-value=1.2e-06  Score=58.34  Aligned_cols=116  Identities=7%  Similarity=-0.008  Sum_probs=79.7

Q ss_pred             EEEEEEe----eCCCeEEEE-cCCCcEEEEEecCCcccce---eeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859          16 TRCIKCF----PNKQGYVLS-SIEGRAAVEYLDTGPEMQK---MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus        16 ~~~i~~~----~~~~~l~~~-~~~g~i~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      ...++++    |+++.++++ ..++.|.+|+.+... ...   ....+..+.        ...+..++++++|+++++..
T Consensus       174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g-~~~~~~~~~~~~~~~--------~~~p~~i~~d~~G~l~v~~~  244 (314)
T 1pjx_A          174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA-KIENKKVWGHIPGTH--------EGGADGMDFDEDNNLLVANW  244 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT-EEEEEEEEEECCCCS--------SCEEEEEEEBTTCCEEEEEE
T ss_pred             cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCC-ccccceEEEECCCCC--------CCCCCceEECCCCCEEEEEc
Confidence            4568899    988765554 567888886655211 011   111111110        02467899999999888887


Q ss_pred             CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEE-EEecCCCeEEEEeCCC
Q psy1859          88 SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTF-ATGGSDGYVNIWDGFN  140 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l-~~~~~d~~i~iwd~~~  140 (162)
                      .++.|.+||..+++.+..+..+...+.++ |+|+++.| ++...++.|..|++..
T Consensus       245 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          245 GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            88999999998777766666555778888 99999954 5555678999999864

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.79  E-value=1.2e-07  Score=66.23  Aligned_cols=112  Identities=12%  Similarity=0.029  Sum_probs=79.5

Q ss_pred             eCCCeEEEEcC-C----CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec----------
Q psy1859          23 PNKQGYVLSSI-E----GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG----------   87 (162)
Q Consensus        23 ~~~~~l~~~~~-~----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~----------   87 (162)
                      ++++.++++.. +    +.|.+  +|..+  .+.+..+.....         +  .++++|+++.+.++.          
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsV--ID~~t--~~vv~~I~vG~~---------P--gia~SpDgk~lyVan~~~~~~~~G~  146 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFV--IDGST--GRILGMTDGGFL---------P--HPVAAEDGSFFAQASTVFERIARGK  146 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEE--EETTT--TEEEEEEEECSS---------C--EEEECTTSSCEEEEEEEEEETTEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEE--EECCC--CEEEEEEECCCC---------C--ceEECCCCCEEEEEeccccccccCC
Confidence            45666555533 2    57777  77766  455544443321         3  899999997776665          


Q ss_pred             CCCeEEEEeCCCccceeeeeec-------ccceeEE-EcCCCCEEEEecC--CCeEEEEeCCCceeeeeecc
Q psy1859          88 SDGYVNIWDGFNKKRLCQFHRY-------DTGITSL-FHQEYNTFATGGS--DGYVNIWDGFNKKRLCQFHR  149 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~~~~~-------~~~v~~~-~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~  149 (162)
                      .++.|.++|..+.+.+..+...       ......+ |+|||++++++..  ++.|.+.|+.+++.+.++..
T Consensus       147 ~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v  218 (426)
T 3c75_H          147 RTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV  218 (426)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence            4678999999999888777532       1234456 9999999999874  57899999999988777653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.78  E-value=1.4e-06  Score=58.05  Aligned_cols=130  Identities=10%  Similarity=-0.108  Sum_probs=82.1

Q ss_pred             cEEEEEEeeCCC-eEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          15 QTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        15 ~~~~i~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      ......|+|+++ .+++...++.+..|  +...  ...  .+....         ..+..++++++|+++++...++.|.
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~--~~~g--~~~--~~~~~~---------~~~~gl~~d~dG~l~v~~~~~~~v~  110 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGW--REDG--TVD--VLLDAT---------AFTNGNAVDAQQRLVHCEHGRRAIT  110 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEE--ETTS--CEE--EEEESC---------SCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEE--eCCC--CEE--EEeCCC---------CccceeeECCCCCEEEEECCCCEEE
Confidence            346788999998 45566667777774  4422  111  122221         1478999999999877777778999


Q ss_pred             EEeCCCccceeeeeec----ccceeEE-EcCCCCEEEE----ecC-------------CCeEEEEeCCCceeeeeeccCC
Q psy1859          94 IWDGFNKKRLCQFHRY----DTGITSL-FHQEYNTFAT----GGS-------------DGYVNIWDGFNKKRLCQFHRYD  151 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~----~~~v~~~-~~~~~~~l~~----~~~-------------d~~i~iwd~~~~~~~~~~~~~~  151 (162)
                      +|+.. ++........    ...+..+ ++|+|+++++    |..             .+.|..+|..+++.....  ..
T Consensus       111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~  187 (305)
T 3dr2_A          111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL  187 (305)
T ss_dssp             EECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE
T ss_pred             EECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC
Confidence            99986 4432211111    1235678 9999998886    332             256888887666543322  33


Q ss_pred             CceeEEEecCC
Q psy1859         152 TGITSLCFSYD  162 (162)
Q Consensus       152 ~~v~~v~~~pd  162 (162)
                      .....++|+||
T Consensus       188 ~~p~gl~~spd  198 (305)
T 3dr2_A          188 DHPNGLAFSPD  198 (305)
T ss_dssp             SSEEEEEECTT
T ss_pred             CCCcceEEcCC
Confidence            35678888886

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.73  E-value=1.7e-06  Score=57.66  Aligned_cols=115  Identities=9%  Similarity=-0.088  Sum_probs=73.3

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeee-eeeeeeccCcccceeceEEEEecCCCCEEEE----ecC
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYA-FKCHRIKEDGIEKIYPVNAISFHQEYNTFAT----GGS   88 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~----~~~   88 (162)
                      ..+..++++++|+.+++...++.|.+++.+  . ....... ......        ..+..++++|+|+++++    +..
T Consensus        86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~--g-~~~~~~~~~~~~~~--------~~~~~i~~d~dG~l~~td~~~g~~  154 (305)
T 3dr2_A           86 AFTNGNAVDAQQRLVHCEHGRRAITRSDAD--G-QAHLLVGRYAGKRL--------NSPNDLIVARDGAIWFTDPPFGLR  154 (305)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTT--S-CEEEEECEETTEEC--------SCCCCEEECTTSCEEEECCSGGGS
T ss_pred             CccceeeECCCCCEEEEECCCCEEEEECCC--C-CEEEEEeccCCCcc--------CCCCCEEECCCCCEEEeCcCCCcc
Confidence            456788999999876665556777774433  2 1221111 111111        14678999999998886    432


Q ss_pred             -------------CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCC------CeEEEEeCCCc
Q psy1859          89 -------------DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSD------GYVNIWDGFNK  141 (162)
Q Consensus        89 -------------d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d------~~i~iwd~~~~  141 (162)
                                   .+.|..+|..+++.....  .......+ |+|+++.|+.+...      +.|.+|++..+
T Consensus       155 ~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~  225 (305)
T 3dr2_A          155 KPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG  225 (305)
T ss_dssp             CGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred             ccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence                         356888887666543332  33445678 99999988777654      68999998654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.72  E-value=8.6e-07  Score=58.94  Aligned_cols=104  Identities=13%  Similarity=0.059  Sum_probs=73.3

Q ss_pred             EEEEEEeeCCCeEEE-EcCCCcEEEEEecCCcccce---eeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          16 TRCIKCFPNKQGYVL-SSIEGRAAVEYLDTGPEMQK---MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~-~~~~g~i~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      ...++|+|+++.++. .+.++.|.+|+++..++...   ....+..         +......++++++|++.++....+.
T Consensus       151 pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~---------~~~~p~g~~~d~~G~lwva~~~~~~  221 (297)
T 3g4e_A          151 SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK---------EEQIPDGMCIDAEGKLWVACYNGGR  221 (297)
T ss_dssp             EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG---------GGCEEEEEEEBTTSCEEEEEETTTE
T ss_pred             ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC---------CCCCCCeeEECCCCCEEEEEcCCCE
Confidence            356899999987654 46678888877764432111   1111111         1124678999999998888888899


Q ss_pred             EEEEeCCCccceeeeeecccceeEE-Ec-CCCCEEEEec
Q psy1859          92 VNIWDGFNKKRLCQFHRYDTGITSL-FH-QEYNTFATGG  128 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~v~~~-~~-~~~~~l~~~~  128 (162)
                      |..||..+++.+..+......++++ |. |+++.|+.++
T Consensus       222 v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          222 VIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             EEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             EEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence            9999999888888887666778889 98 8887665554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.70  E-value=4.4e-06  Score=57.52  Aligned_cols=76  Identities=9%  Similarity=0.037  Sum_probs=60.2

Q ss_pred             eEEEEecCCCCEEEEecC----------CCeEEEEeCCCccceeeeeecccceeEE-EcCCCC-EEEEec-CCCeEEEEe
Q psy1859          71 VNAISFHQEYNTFATGGS----------DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYN-TFATGG-SDGYVNIWD  137 (162)
Q Consensus        71 v~~~~~~p~~~~l~~~~~----------d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~-~d~~i~iwd  137 (162)
                      ...++++|+++.+.+...          .+.|.++|..+++.+..+.. ......+ |+|||+ +++++. .++.|.++|
T Consensus       269 ~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD  347 (373)
T 2mad_H          269 WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             eEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence            445788999866665432          36899999999998888853 3457788 999999 777777 589999999


Q ss_pred             CCCceeeeee
Q psy1859         138 GFNKKRLCQF  147 (162)
Q Consensus       138 ~~~~~~~~~~  147 (162)
                      +.+++.+.++
T Consensus       348 ~~t~~vv~~i  357 (373)
T 2mad_H          348 AGAGDQDQST  357 (373)
T ss_pred             CCCCCEEeee
Confidence            9999988774

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.70  E-value=1.6e-06  Score=59.75  Aligned_cols=90  Identities=16%  Similarity=0.165  Sum_probs=68.3

Q ss_pred             eEEEEecCCCCEEEEecC----------CCeEEEEeCCCccceeeeeecccceeEE-EcCCCC-EEEEe-cCCCeEEEEe
Q psy1859          71 VNAISFHQEYNTFATGGS----------DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYN-TFATG-GSDGYVNIWD  137 (162)
Q Consensus        71 v~~~~~~p~~~~l~~~~~----------d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~-~~d~~i~iwd  137 (162)
                      ...++++|+++.+.....          .+.|.+.|+.+++.+..+... ..+..+ +++|++ +|+++ ..++.|.++|
T Consensus       282 ~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD  360 (386)
T 3sjl_D          282 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHD  360 (386)
T ss_dssp             SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEE
T ss_pred             cceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEE
Confidence            445777998866665432          267999999999999888643 467788 999997 66665 4589999999


Q ss_pred             CCCceeeeeeccCCCceeEEEecCC
Q psy1859         138 GFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       138 ~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ..+++.+.++... +....+.+++|
T Consensus       361 ~~t~k~~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          361 AESGEELRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             TTTCCEEEEECCC-CSSCCEEEECC
T ss_pred             CCCCcEEEEecCC-CCCceeEECCc
Confidence            9999999888643 34566777776

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.68  E-value=7.2e-06  Score=55.28  Aligned_cols=115  Identities=10%  Similarity=-0.040  Sum_probs=69.2

Q ss_pred             cccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC----
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS----   88 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~----   88 (162)
                      ...+.+++++++++++++. .++ +.+  ++..++...........       .....+..++++|+|+++++...    
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~~g-l~~--~d~~~g~~~~~~~~~~~-------~~~~~~~~i~~d~~G~l~v~~~~~~~~  157 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-DDG-LFL--RDTATGVLTLHAELESD-------LPGNRSNDGRMHPSGALWIGTMGRKAE  157 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TTE-EEE--EETTTCCEEEEECSSTT-------CTTEEEEEEEECTTSCEEEEEEETTCC
T ss_pred             CCcceEEEEeCCCeEEEEE-CCC-EEE--EECCCCcEEEEeeCCCC-------CCCCCCCCEEECCCCCEEEEeCCCcCC
Confidence            4567889999999877664 333 555  55443222222111000       01125889999999987765542    


Q ss_pred             --CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEe-cCCCeEEEEeCC--Cc
Q psy1859          89 --DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATG-GSDGYVNIWDGF--NK  141 (162)
Q Consensus        89 --d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~-~~d~~i~iwd~~--~~  141 (162)
                        .+.|..++  +++. ..+.........+ |+|+++.++.+ ..++.|.+||+.  ++
T Consensus       158 ~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~G  213 (326)
T 2ghs_A          158 TGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG  213 (326)
T ss_dssp             TTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred             CCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccC
Confidence              35666666  4433 2232233345677 99999876555 567899999985  55

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.67  E-value=3.1e-06  Score=58.93  Aligned_cols=137  Identities=6%  Similarity=-0.051  Sum_probs=83.9

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeee--eeeeeeccCcccceeceEEEEecCC-CCEEEEecCCC
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYA--FKCHRIKEDGIEKIYPVNAISFHQE-YNTFATGGSDG   90 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~   90 (162)
                      .....++++|++..|+++..++.|..  ++...........  ..+...       ..+...++|+|+ +.++++-..++
T Consensus       219 ~~p~~iav~p~~g~lyv~d~~~~I~~--~d~~~~~~~~~~~~~~~g~~~-------~~P~~~ia~~p~~g~lyv~d~~~~  289 (409)
T 3hrp_A          219 GKIGAVALDETEEWLYFVDSNKNFGR--FNVKTQEVTLIKQLELSGSLG-------TNPGPYLIYYFVDSNFYMSDQNLS  289 (409)
T ss_dssp             SCCCBCEECTTSSEEEEECTTCEEEE--EETTTCCEEEEEECCCCSCCC-------CSSCCEEEEETTTTEEEEEETTTT
T ss_pred             CCcEEEEEeCCCCeEEEEECCCcEEE--EECCCCCEEEEecccccCCCC-------CCccccEEEeCCCCEEEEEeCCCC
Confidence            44567899995555555666777776  4543311111100  011100       001238999995 67777777889


Q ss_pred             eEEEEeCCCccceeeeeecc---------------cceeEE-EcCCCCEEEEec-CCCeEEEEeCCCceeeeeeccC---
Q psy1859          91 YVNIWDGFNKKRLCQFHRYD---------------TGITSL-FHQEYNTFATGG-SDGYVNIWDGFNKKRLCQFHRY---  150 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~---------------~~v~~~-~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~---  150 (162)
                      .|+.|+....  +..+.+..               .....+ ++|+|+++++-. .++.|+.|++.++.. .++.++   
T Consensus       290 ~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~  366 (409)
T 3hrp_A          290 SVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDV  366 (409)
T ss_dssp             EEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTC
T ss_pred             EEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCC
Confidence            9999997643  22222221               236678 999999878777 889999999877763 333333   


Q ss_pred             ------------CCceeEEEecCC
Q psy1859         151 ------------DTGITSLCFSYD  162 (162)
Q Consensus       151 ------------~~~v~~v~~~pd  162 (162)
                                  -.....++++||
T Consensus       367 ~g~~~g~~~~~~~~~P~giavd~~  390 (409)
T 3hrp_A          367 ASQIDGTPLEATFNYPYDICYDGE  390 (409)
T ss_dssp             BSCCCBSTTTCCBSSEEEEEECSS
T ss_pred             CCcCCCChhceEeCCceEEEEcCC
Confidence                        135778888875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.65  E-value=1.8e-06  Score=63.94  Aligned_cols=133  Identities=12%  Similarity=0.053  Sum_probs=77.8

Q ss_pred             EEEEEeeCCCeEEEEcCCCc-------------EEEEEecCCcccceeeeeeee-eeeccCcccceeceEEEEecCCCCE
Q psy1859          17 RCIKCFPNKQGYVLSSIEGR-------------AAVEYLDTGPEMQKMKYAFKC-HRIKEDGIEKIYPVNAISFHQEYNT   82 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~~g~-------------i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~   82 (162)
                      ..++|+ |++.|+.++.+..             |.+|++.........++.... +.         ..+.++.|+|+++.
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~---------~~~~~~~~SpDg~~  247 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH---------HRYVGATVTEDDRF  247 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGC---------CSEEEEEECTTSCE
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCC---------eEEEEEEEcCCCCE
Confidence            357899 9999988877643             555444433322233333222 22         13678999999987


Q ss_pred             EEEec----CCCeEEEEeCCCcc-ceeeeeecccceeEEEcCCCCEE-EEecCC---CeEEEEeCCCcee--eeeeccCC
Q psy1859          83 FATGG----SDGYVNIWDGFNKK-RLCQFHRYDTGITSLFHQEYNTF-ATGGSD---GYVNIWDGFNKKR--LCQFHRYD  151 (162)
Q Consensus        83 l~~~~----~d~~v~~wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~l-~~~~~d---~~i~iwd~~~~~~--~~~~~~~~  151 (162)
                      |+...    .+..++++|+.++. ....+..+.......++++|..| +.+..+   +.|..+|+.++..  ...+..|.
T Consensus       248 l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~  327 (693)
T 3iuj_A          248 LLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER  327 (693)
T ss_dssp             EEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC
T ss_pred             EEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC
Confidence            65432    23589999998763 34455444444444355655554 444443   6899999987653  23444555


Q ss_pred             CceeEEEecC
Q psy1859         152 TGITSLCFSY  161 (162)
Q Consensus       152 ~~v~~v~~~p  161 (162)
                      ..+.  .|+|
T Consensus       328 ~~~~--~~s~  335 (693)
T 3iuj_A          328 QQVL--TVHS  335 (693)
T ss_dssp             SSCE--EEEE
T ss_pred             CCEE--EEEE
Confidence            4443  5544

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.64  E-value=1.9e-06  Score=60.20  Aligned_cols=74  Identities=12%  Similarity=0.167  Sum_probs=59.9

Q ss_pred             EEEecCCCCEEEEecC----------CCeEEEEeCCCccceeeeeecccceeEE-EcCCCC-EEEEec-CCCeEEEEeCC
Q psy1859          73 AISFHQEYNTFATGGS----------DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYN-TFATGG-SDGYVNIWDGF  139 (162)
Q Consensus        73 ~~~~~p~~~~l~~~~~----------d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~-~d~~i~iwd~~  139 (162)
                      .++++|++..+.+...          .+.|.+.|..+.+.+.++... .....+ |+|||+ ++++.. .++.|.++|+.
T Consensus       323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~  401 (426)
T 3c75_H          323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAA  401 (426)
T ss_dssp             CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence            4789999865555431          357999999999999888643 357778 999999 888887 58999999999


Q ss_pred             Cceeeeee
Q psy1859         140 NKKRLCQF  147 (162)
Q Consensus       140 ~~~~~~~~  147 (162)
                      +++.+.++
T Consensus       402 t~kvv~tI  409 (426)
T 3c75_H          402 TGEELRSV  409 (426)
T ss_dssp             TCCEEEEE
T ss_pred             CCCEEEEe
Confidence            99998887

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.59  E-value=7.4e-06  Score=53.71  Aligned_cols=118  Identities=8%  Similarity=0.002  Sum_probs=77.5

Q ss_pred             EEEEEEeeCCCeEEEEcC--CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          16 TRCIKCFPNKQGYVLSSI--EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~--~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      ..-+.+++++..+++.+.  ++.|.+  +|..+  .+....+......        ....+++.. +++.++...++.+.
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~--iD~~t--g~v~~~i~l~~~~--------fgeGi~~~g-~~lyv~t~~~~~v~   89 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQ--VALQT--GKVENIHKMDDSY--------FGEGLTLLN-EKLYQVVWLKNIGF   89 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEE--EETTT--CCEEEEEECCTTC--------CEEEEEEET-TEEEEEETTCSEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEE--EECCC--CCEEEEEecCCCc--------ceEEEEEeC-CEEEEEEecCCEEE
Confidence            467899998755555443  466777  67665  3333332211110        234566653 35666666889999


Q ss_pred             EEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859          94 IWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      ++|..+.+.+.++......  .. +++||+.++++..++.|.+.|..+.+.+..+.
T Consensus        90 viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~  143 (266)
T 2iwa_A           90 IYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHN  143 (266)
T ss_dssp             EEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             EEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence            9999999888887633111  23 57788888888888999999999887766654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.53  E-value=1e-05  Score=56.72  Aligned_cols=137  Identities=9%  Similarity=0.110  Sum_probs=84.7

Q ss_pred             eCCCeEEE-EcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC------CeEEEE
Q psy1859          23 PNKQGYVL-SSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD------GYVNIW   95 (162)
Q Consensus        23 ~~~~~l~~-~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d------~~v~~w   95 (162)
                      +++++|++ +..++.|.+.+........+....+......  ...-......+...|+| +++++..+      +.|.+.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~--~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVK--KVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHH--HHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcc--cccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEE
Confidence            66777665 5666889985443222112333222100000  00000135667888999 77766555      789999


Q ss_pred             eCCCccceeeeeeccc---ceeEE-EcCCCCEEEEec-------------------CCCeEEEEeCCCceeeeeeccC-C
Q psy1859          96 DGFNKKRLCQFHRYDT---GITSL-FHQEYNTFATGG-------------------SDGYVNIWDGFNKKRLCQFHRY-D  151 (162)
Q Consensus        96 d~~~~~~~~~~~~~~~---~v~~~-~~~~~~~l~~~~-------------------~d~~i~iwd~~~~~~~~~~~~~-~  151 (162)
                      |..+.+.+.++.....   ....+ |+|+++.++++.                   .+.+|.+||+.+++.+.++... .
T Consensus       170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~  249 (462)
T 2ece_A          170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE  249 (462)
T ss_dssp             CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred             ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence            9999888887763322   24457 899999998885                   3689999999988888777642 1


Q ss_pred             -CceeEEEe--cCC
Q psy1859         152 -TGITSLCF--SYD  162 (162)
Q Consensus       152 -~~v~~v~~--~pd  162 (162)
                       .....+.|  +||
T Consensus       250 g~~P~~i~f~~~Pd  263 (462)
T 2ece_A          250 NRMALELRPLHDPT  263 (462)
T ss_dssp             EEEEEEEEECSSTT
T ss_pred             CCccceeEeeECCC
Confidence             23445555  664

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.49  E-value=8.8e-06  Score=55.92  Aligned_cols=86  Identities=7%  Similarity=-0.019  Sum_probs=64.9

Q ss_pred             EEecCCCCEEEEecC---------CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCE-EEEec-CCCeEEEEeCCCc
Q psy1859          74 ISFHQEYNTFATGGS---------DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNT-FATGG-SDGYVNIWDGFNK  141 (162)
Q Consensus        74 ~~~~p~~~~l~~~~~---------d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~-l~~~~-~d~~i~iwd~~~~  141 (162)
                      ++++|+++.+..+..         ++.+.++|+.+.+.+..+.... ....+ |+|||++ +++.. .++.|.++|+.++
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~  347 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence            789999876665422         2356699999999888886443 57788 9999984 55555 5899999999999


Q ss_pred             eeeeeeccCCCceeEEEecC
Q psy1859         142 KRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus       142 ~~~~~~~~~~~~v~~v~~~p  161 (162)
                      +.+.++.... ....+++.+
T Consensus       348 kvv~~I~vg~-~P~~i~~~~  366 (368)
T 1mda_H          348 QDQSSVELDK-GPESLSVQN  366 (368)
T ss_dssp             EEEEECCCCS-CCCEEECCC
T ss_pred             cEEEEEECCC-CCCEEEeec
Confidence            9998887544 456677654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.48  E-value=2.3e-08  Score=68.67  Aligned_cols=111  Identities=14%  Similarity=0.158  Sum_probs=55.6

Q ss_pred             CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccce
Q psy1859          24 NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRL  103 (162)
Q Consensus        24 ~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~  103 (162)
                      ++..+++++.||.+..  ||..+  .+....+.. .          .+.+..+..++..+++++.|+.|+.||..+++.+
T Consensus         8 ~~~~v~~gs~dg~v~a--~d~~t--G~~~W~~~~-~----------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~   72 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHA--VSKRT--GSIKWTLKE-D----------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL   72 (369)
T ss_dssp             CTTEEEEEETTSEEEE--EETTT--CCEEEEEEC-C----------CSCCCC-----CCEEECTTTCCEEEC-----CCS
T ss_pred             eCCEEEEEcCCCEEEE--EECCC--CCEEEEecC-C----------CceecceEcCCCEEEEeCCCCEEEEEECCCCcee
Confidence            4678889999999888  56555  444444443 1          2444444566778888889999999999888776


Q ss_pred             eeeeeccc-ceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeecc
Q psy1859         104 CQFHRYDT-GITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR  149 (162)
Q Consensus       104 ~~~~~~~~-~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  149 (162)
                      ..+..+.. .+... .-.++..+++++.++.++.||.++|+.+..+..
T Consensus        73 w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~  120 (369)
T 2hz6_A           73 TKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSS  120 (369)
T ss_dssp             EECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC----------
T ss_pred             eeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecC
Confidence            55432211 11111 111344667777788888888888877666543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.41  E-value=4.1e-07  Score=62.46  Aligned_cols=105  Identities=11%  Similarity=0.048  Sum_probs=58.7

Q ss_pred             CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCcccee
Q psy1859          25 KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC  104 (162)
Q Consensus        25 ~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~  104 (162)
                      +..+++++.++.+..  +|..+  .+....+..+.             ...++|++..+++++.++.|..||.++++.+.
T Consensus        92 ~~~v~~g~~dg~v~a--~D~~t--G~~~w~~~~~~-------------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W  154 (369)
T 2hz6_A           92 DGILYMGKKQDIWYV--IDLLT--GEKQQTLSSAF-------------ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW  154 (369)
T ss_dssp             ---CCCCEEEEEEEE--ECCC-------------------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred             CCEEEEEeCCCEEEE--EECCC--CcEEEEecCCC-------------cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence            344566666777766  55554  33333332221             13456677888899999999999999998776


Q ss_pred             eeeecccceeEE-EcCCC---CEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859         105 QFHRYDTGITSL-FHQEY---NTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus       105 ~~~~~~~~v~~~-~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      .+....  .... ++++.   ..+++++.++.|..||.++++.+..+.
T Consensus       155 ~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          155 NATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             EEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             eEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            654321  1222 44432   567778899999999999999887765

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.41  E-value=1.6e-05  Score=59.53  Aligned_cols=115  Identities=13%  Similarity=0.038  Sum_probs=69.6

Q ss_pred             cEEEEEEe-eCCCeEEEEcC-CCc--EEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC-
Q psy1859          15 QTRCIKCF-PNKQGYVLSSI-EGR--AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD-   89 (162)
Q Consensus        15 ~~~~i~~~-~~~~~l~~~~~-~g~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-   89 (162)
                      .+...+|| |||++++.+.. +|.  ..||.++..++. +.... .. .         .....++|+|+++.|+....+ 
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~-~~l~~-~~-~---------~~~~~~~WspDg~~l~y~~~d~  242 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPS-QTIAD-KV-S---------GTNGEIVWGPDHTSLFYVTKDE  242 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTT-CCCCC-CE-E---------EECSCCEECSSTTEEEEEEECT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCC-EeCCc-cc-c---------CceeeEEEecCCCEEEEEEECC
Confidence            45678999 99998887643 232  234446655420 11100 00 1         024578999999877766554 


Q ss_pred             ----CeEEEEeCCCccce--eeeee-cccceeEE-EcCCCCEEEEec---CCCeEEEEeCCCc
Q psy1859          90 ----GYVNIWDGFNKKRL--CQFHR-YDTGITSL-FHQEYNTFATGG---SDGYVNIWDGFNK  141 (162)
Q Consensus        90 ----~~v~~wd~~~~~~~--~~~~~-~~~~v~~~-~~~~~~~l~~~~---~d~~i~iwd~~~~  141 (162)
                          ..|+++++.++...  ..+.. .......+ |+|||++|+...   ....|.++|+.++
T Consensus       243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence                36888888765422  22221 22344567 999999887765   3457888999765

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.41  E-value=3.3e-05  Score=50.47  Aligned_cols=116  Identities=6%  Similarity=-0.009  Sum_probs=77.3

Q ss_pred             EEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEE
Q psy1859          16 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW   95 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~w   95 (162)
                      +..+.++ ++..+.+++.+|.|++  +|..+  .+....+ ....        ..-..+++.. +++++....++.+.+|
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~--iD~~T--gkv~~~~-l~~~--------~FgeGit~~g-~~Ly~ltw~~~~v~V~  121 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQ--LSLES--AQPVWME-RLGN--------IFAEGLASDG-ERLYQLTWTEGLLFTW  121 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEE--CCSSC--SSCSEEE-ECTT--------CCEEEEEECS-SCEEEEESSSCEEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEE--EECCC--CcEEeEE-CCCC--------cceeEEEEeC-CEEEEEEccCCEEEEE
Confidence            3456776 3566667788888877  77766  3333332 1111        0123455543 3566666789999999


Q ss_pred             eCCCccceeeeeecccceeEEEcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859          96 DGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        96 d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      |..+.+.+.++..... -.. +.++++.|+.+..++.|.++|..+.+.+.++.
T Consensus       122 D~~Tl~~~~ti~~~~e-GwG-Lt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~  172 (268)
T 3nok_A          122 SGMPPQRERTTRYSGE-GWG-LCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQ  172 (268)
T ss_dssp             ETTTTEEEEEEECSSC-CCC-EEEETTEEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             ECCcCcEEEEEeCCCc-eeE-EecCCCEEEEECCCCEEEEEcCCCCeEEEEEE
Confidence            9999999888874322 112 45678888888889999999999988766654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.38  E-value=2.4e-05  Score=54.86  Aligned_cols=114  Identities=12%  Similarity=0.112  Sum_probs=74.6

Q ss_pred             EEEEEeeCCCeEEEEcCC------CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec---
Q psy1859          17 RCIKCFPNKQGYVLSSIE------GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG---   87 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~~------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~---   87 (162)
                      ..+.+.|+| .++++..+      |.+.+  +|..+  .+.+.........      ...-..+.|+|+++.+++..   
T Consensus       141 h~~~~~pdG-i~Vs~~g~~~g~~~g~v~v--lD~~T--~~v~~~~~~~~~~------~~~~Yd~~~~p~~~~mvsS~wg~  209 (462)
T 2ece_A          141 HTVHCGPDA-IYISALGNEEGEGPGGILM--LDHYS--FEPLGKWEIDRGD------QYLAYDFWWNLPNEVLVSSEWAV  209 (462)
T ss_dssp             EEEEECSSC-EEEEEEEETTSCSCCEEEE--ECTTT--CCEEEECCSBCTT------CCCCCCEEEETTTTEEEECBCCC
T ss_pred             cceeECCCe-EEEEcCCCcCCCCCCeEEE--EECCC--CeEEEEEccCCCC------ccccceEEECCCCCEEEEccCcC
Confidence            457788999 77766554      56777  77665  3333333211110      01234688899999888884   


Q ss_pred             ----------------CCCeEEEEeCCCccceeeeeec--ccceeEE---EcCCCCEEEEecC------CCeEEEEeCCC
Q psy1859          88 ----------------SDGYVNIWDGFNKKRLCQFHRY--DTGITSL---FHQEYNTFATGGS------DGYVNIWDGFN  140 (162)
Q Consensus        88 ----------------~d~~v~~wd~~~~~~~~~~~~~--~~~v~~~---~~~~~~~l~~~~~------d~~i~iwd~~~  140 (162)
                                      .+..|.+||+.+++.+.++...  ......+   |+|+++++++++.      +++|.+|....
T Consensus       210 p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~  289 (462)
T 2ece_A          210 PNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED  289 (462)
T ss_dssp             HHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred             ccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence                            4789999999988777777642  1234444   5999999888774      56787766544


Q ss_pred             c
Q psy1859         141 K  141 (162)
Q Consensus       141 ~  141 (162)
                      +
T Consensus       290 g  290 (462)
T 2ece_A          290 G  290 (462)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.36  E-value=2.5e-05  Score=50.92  Aligned_cols=115  Identities=11%  Similarity=0.065  Sum_probs=74.3

Q ss_pred             EEEEEeeCCCeEEEEcCCC--cEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEE
Q psy1859          17 RCIKCFPNKQGYVLSSIEG--RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI   94 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~   94 (162)
                      .-+.++ ++..+.+++.+|  .|++  +|..+  .+....+.....        ..-..++... +++.+....++.+.+
T Consensus        46 qGL~~~-~~~LyestG~~g~S~v~~--vD~~T--gkv~~~~~l~~~--------~FgeGit~~g-~~ly~ltw~~~~v~v  111 (262)
T 3nol_A           46 EGFFYR-NGYFYESTGLNGRSSIRK--VDIES--GKTLQQIELGKR--------YFGEGISDWK-DKIVGLTWKNGLGFV  111 (262)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEE--ECTTT--CCEEEEEECCTT--------CCEEEEEEET-TEEEEEESSSSEEEE
T ss_pred             ceEEEE-CCEEEEECCCCCCceEEE--EECCC--CcEEEEEecCCc--------cceeEEEEeC-CEEEEEEeeCCEEEE
Confidence            557777 666666666666  5666  77766  333333322211        0122344432 245555567899999


Q ss_pred             EeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859          95 WDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        95 wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      +|..+.+.+.++....   ... ++++++.|+.+..++.|.++|..+.+.+.++.
T Consensus       112 ~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~  163 (262)
T 3nol_A          112 WNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTIT  163 (262)
T ss_dssp             EETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEE
T ss_pred             EECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEE
Confidence            9999999988887432   223 56678888888778899999999887666654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.36  E-value=0.00014  Score=47.47  Aligned_cols=133  Identities=10%  Similarity=-0.018  Sum_probs=79.5

Q ss_pred             cEEEEEEeeCCCeEEEEcC---CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCC
Q psy1859          15 QTRCIKCFPNKQGYVLSSI---EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDG   90 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~   90 (162)
                      ....++++|++..+..+..   .+.|..++.+...  .+....  . ..        .....++++|++ .++++-...+
T Consensus       123 ~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~--~~~~~~--~-~~--------~~P~gia~d~~~~~lyv~d~~~~  189 (267)
T 1npe_A          123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN--RRILAQ--D-NL--------GLPNGLTFDAFSSQLCWVDAGTH  189 (267)
T ss_dssp             SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC--CEEEEC--T-TC--------SCEEEEEEETTTTEEEEEETTTT
T ss_pred             CccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC--cEEEEE--C-CC--------CCCcEEEEcCCCCEEEEEECCCC
Confidence            4567899996555554443   3566664444322  221111  0 00        146789999976 4556666778


Q ss_pred             eEEEEeCCCccceeeeeecccceeEEEcCCCCEEEEe-cCCCeEEEEeCCCceeeeeeccCC-CceeEEEecCC
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATG-GSDGYVNIWDGFNKKRLCQFHRYD-TGITSLCFSYD  162 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~pd  162 (162)
                      .|..+|.........+. .......+ .+++..++.+ ...+.|..+|..+++.+.++.... .....+++.||
T Consensus       190 ~I~~~~~~g~~~~~~~~-~~~~P~gi-~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          190 RAECLNPAQPGRRKVLE-GLQYPFAV-TSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             EEEEEETTEEEEEEEEE-CCCSEEEE-EEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             EEEEEecCCCceEEEec-CCCCceEE-EEeCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence            99999997543333222 22223445 2234455544 466899999999998888776433 24778888875

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.35  E-value=1.9e-06  Score=59.16  Aligned_cols=90  Identities=8%  Similarity=-0.082  Sum_probs=65.4

Q ss_pred             cEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec----------CCCeEEEEeCCCccceee
Q psy1859          36 RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG----------SDGYVNIWDGFNKKRLCQ  105 (162)
Q Consensus        36 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~----------~d~~v~~wd~~~~~~~~~  105 (162)
                      .+.+  +|..+  .+.+..+.....         +  .++++|+++.+.++.          .++.|.+||+.+++.+.+
T Consensus        47 ~vsv--ID~~t--~~v~~~i~vG~~---------P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~  111 (368)
T 1mda_H           47 ENWV--SCAGC--GVTLGHSLGAFL---------S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD  111 (368)
T ss_dssp             EEEE--EETTT--TEEEEEEEECTT---------C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred             eEEE--EECCC--CeEEEEEeCCCC---------C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence            5666  77666  455544443321         4  799999997777665          478999999999999888


Q ss_pred             eeec-------ccceeEE-EcCCCCEEEEecC--CCeEEE--EeCCC
Q psy1859         106 FHRY-------DTGITSL-FHQEYNTFATGGS--DGYVNI--WDGFN  140 (162)
Q Consensus       106 ~~~~-------~~~v~~~-~~~~~~~l~~~~~--d~~i~i--wd~~~  140 (162)
                      +...       ......+ ++|||++++++..  +..+.+  +|..+
T Consensus       112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            8643       1235567 9999999998864  467888  89865

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.35  E-value=1.6e-05  Score=58.94  Aligned_cols=62  Identities=15%  Similarity=0.139  Sum_probs=48.5

Q ss_pred             CCeEEEEeCCCccceeeeeecccceeEEEcCCCCEEEEecCCCeEEEEeCCCceeeeeeccC
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY  150 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  150 (162)
                      +|.|..||+.+++.+..+..+.......+...+.++++++.|+.++.||.++|+.+.++...
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence            37899999999998877765432222125667889999999999999999999999888644

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.33  E-value=4.6e-05  Score=51.66  Aligned_cols=93  Identities=10%  Similarity=-0.006  Sum_probs=59.7

Q ss_pred             ceEEEEecCCCCEEEEecCCC-eEEEEeCC---Cc-----cceee--eeecccceeEE-EcCCCCEEEEecCCCeEEEEe
Q psy1859          70 PVNAISFHQEYNTFATGGSDG-YVNIWDGF---NK-----KRLCQ--FHRYDTGITSL-FHQEYNTFATGGSDGYVNIWD  137 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~-~v~~wd~~---~~-----~~~~~--~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd  137 (162)
                      .+..|+|+|+++.|..+..++ .+..++..   .+     +....  ..++......+ ++++|.++++...++.|.+||
T Consensus       196 ~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d  275 (343)
T 2qe8_A          196 GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT  275 (343)
T ss_dssp             CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred             ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence            468899999998777766554 55555532   11     11111  11233345567 999999999988999999999


Q ss_pred             CCCceeeeeecc-CCCceeEEEecCC
Q psy1859         138 GFNKKRLCQFHR-YDTGITSLCFSYD  162 (162)
Q Consensus       138 ~~~~~~~~~~~~-~~~~v~~v~~~pd  162 (162)
                      ..+++....... +-..+.+++|.||
T Consensus       276 ~~~G~~~~~~~~~~~~~p~~va~~~~  301 (343)
T 2qe8_A          276 SADRAYKLLVTDEKLSWTDSFNFGSD  301 (343)
T ss_dssp             TTTTEEEEEEECGGGSCEEEEEECTT
T ss_pred             CCCCCEEEEEECCceecCCeeEECCC
Confidence            856654322222 2346788998765

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.31  E-value=0.00013  Score=47.88  Aligned_cols=122  Identities=6%  Similarity=-0.018  Sum_probs=78.0

Q ss_pred             CCeEEEE-cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccce
Q psy1859          25 KQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRL  103 (162)
Q Consensus        25 ~~~l~~~-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~  103 (162)
                      ++.+..+ -.++.+.+  +|..+  .+.+.++... .          -....++++++.++++..++.|.++|..+.+.+
T Consensus        75 g~~lyv~t~~~~~v~v--iD~~t--~~v~~~i~~g-~----------~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~  139 (266)
T 2iwa_A           75 NEKLYQVVWLKNIGFI--YDRRT--LSNIKNFTHQ-M----------KDGWGLATDGKILYGSDGTSILYEIDPHTFKLI  139 (266)
T ss_dssp             TTEEEEEETTCSEEEE--EETTT--TEEEEEEECC-S----------SSCCEEEECSSSEEEECSSSEEEEECTTTCCEE
T ss_pred             CCEEEEEEecCCEEEE--EECCC--CcEEEEEECC-C----------CCeEEEEECCCEEEEECCCCeEEEEECCCCcEE
Confidence            4444444 45577777  66655  4444443322 1          112335667765666667899999999998877


Q ss_pred             eeeeecc--c---ceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccC-------------CCceeEEEecCC
Q psy1859         104 CQFHRYD--T---GITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY-------------DTGITSLCFSYD  162 (162)
Q Consensus       104 ~~~~~~~--~---~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------------~~~v~~v~~~pd  162 (162)
                      ..+....  .   ....+ |. +|+.++....++.|.+-|..+++.+..+...             ......|+|+|+
T Consensus       140 ~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~  216 (266)
T 2iwa_A          140 KKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQE  216 (266)
T ss_dssp             EEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETT
T ss_pred             EEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCC
Confidence            7765322  2   24466 77 6765555557889999999999988877531             124578999885

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.30  E-value=0.00012  Score=47.74  Aligned_cols=124  Identities=9%  Similarity=-0.001  Sum_probs=77.9

Q ss_pred             eeCCCeEEEEc-CCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCc
Q psy1859          22 FPNKQGYVLSS-IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNK  100 (162)
Q Consensus        22 ~~~~~~l~~~~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~  100 (162)
                      .++++.+...+ .++.+.+  +|..+  .+.+.++....            ....+++++..|+.+..++.|.++|..+.
T Consensus        93 t~~g~~ly~ltw~~~~v~v--~D~~t--~~~~~ti~~~~------------eG~glt~dg~~L~~SdGs~~i~~iDp~T~  156 (262)
T 3nol_A           93 SDWKDKIVGLTWKNGLGFV--WNIRN--LRQVRSFNYDG------------EGWGLTHNDQYLIMSDGTPVLRFLDPESL  156 (262)
T ss_dssp             EEETTEEEEEESSSSEEEE--EETTT--CCEEEEEECSS------------CCCCEEECSSCEEECCSSSEEEEECTTTC
T ss_pred             EEeCCEEEEEEeeCCEEEE--EECcc--CcEEEEEECCC------------CceEEecCCCEEEEECCCCeEEEEcCCCC
Confidence            33455555444 4566666  66655  34443333211            12333456766666666889999999998


Q ss_pred             cceeeeeec--ccc---eeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccC------------CCceeEEEecCC
Q psy1859         101 KRLCQFHRY--DTG---ITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY------------DTGITSLCFSYD  162 (162)
Q Consensus       101 ~~~~~~~~~--~~~---v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~v~~v~~~pd  162 (162)
                      +.+..+...  ..+   +..+ |. +|+..+..-.+..|.+.|.++++.+..+...            ....+.|+|+|+
T Consensus       157 ~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~  235 (262)
T 3nol_A          157 TPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE  235 (262)
T ss_dssp             SEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT
T ss_pred             eEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC
Confidence            877776542  223   3345 65 6766666667889999999999987776531            124578999885

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.29  E-value=1.8e-05  Score=58.61  Aligned_cols=60  Identities=15%  Similarity=0.180  Sum_probs=47.8

Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccC
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY  150 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  150 (162)
                      +.|..||+.+++.+..+.. ..+.... +..++.++++++.|+.+++||.++++.+..+...
T Consensus       457 g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~  517 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence            7899999999988877753 2333334 6667888999999999999999999998888643

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.24  E-value=7.7e-05  Score=54.06  Aligned_cols=132  Identities=8%  Similarity=0.001  Sum_probs=83.4

Q ss_pred             cEEEEEE-e-eCCCeEEEEc------------------CCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEE
Q psy1859          15 QTRCIKC-F-PNKQGYVLSS------------------IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI   74 (162)
Q Consensus        15 ~~~~i~~-~-~~~~~l~~~~------------------~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   74 (162)
                      ....+++ . |+++++++++                  .++.+.+  +|..+  .+...++.-...          ...+
T Consensus       135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv--ID~~t--~~v~~qI~Vgg~----------pd~~  200 (595)
T 1fwx_A          135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA--VDADK--WEVAWQVLVSGN----------LDNC  200 (595)
T ss_dssp             SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE--EETTT--TEEEEEEEESSC----------CCCE
T ss_pred             CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE--EECCC--CeEEEEEEeCCC----------ccce
Confidence            3456776 4 8999988874                  2345666  55554  444444332111          3567


Q ss_pred             EecCCCCEEEEecCCC--------------------------------------eEEEEeCCC--ccc-eeeeeecccce
Q psy1859          75 SFHQEYNTFATGGSDG--------------------------------------YVNIWDGFN--KKR-LCQFHRYDTGI  113 (162)
Q Consensus        75 ~~~p~~~~l~~~~~d~--------------------------------------~v~~wd~~~--~~~-~~~~~~~~~~v  113 (162)
                      +++|+|+++++.+.+.                                      .|.+.|.++  ++. +..+.. ....
T Consensus       201 ~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~P  279 (595)
T 1fwx_A          201 DADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNP  279 (595)
T ss_dssp             EECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSC
T ss_pred             EECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCc
Confidence            7899998877766442                                      366777776  434 344443 3455


Q ss_pred             eEE-EcCCCCEEEEec-CCCeEEEEeCCCce------------eeeeeccCCCceeEEEecCC
Q psy1859         114 TSL-FHQEYNTFATGG-SDGYVNIWDGFNKK------------RLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       114 ~~~-~~~~~~~l~~~~-~d~~i~iwd~~~~~------------~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ..+ ++|||+++++++ .+.+|.++|+.+.+            .+.... -......++|+||
T Consensus       280 hGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~d  341 (595)
T 1fwx_A          280 HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGR  341 (595)
T ss_dssp             CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTT
T ss_pred             eEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCC
Confidence            677 999999877766 67899999998652            233332 3346788888886

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.21  E-value=0.00012  Score=47.30  Aligned_cols=119  Identities=8%  Similarity=-0.038  Sum_probs=75.2

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCC--cEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEG--RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      .-+.-+.|+. +..+.+++.+|  .++.  +|..+  .+...........        .-..++... +++++....++.
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~--vD~~t--gkv~~~~~l~~~~--------fgeGi~~~~-~~ly~ltw~~~~   86 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRK--VDLET--GRILQRAEVPPPY--------FGAGIVAWR-DRLIQLTWRNHE   86 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEE--EETTT--CCEEEEEECCTTC--------CEEEEEEET-TEEEEEESSSSE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEE--EECCC--CCEEEEEeCCCCc--------ceeEEEEeC-CEEEEEEeeCCE
Confidence            3345677876 55556666654  6666  66665  3333332222110        123344432 355556668899


Q ss_pred             EEEEeCCCccceeeeeecccceeEEEcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859          92 VNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      +.+||..+.+.+.++...... .. +.++++.|+.+..++.|.++|..+.+.+.++.
T Consensus        87 v~v~D~~tl~~~~ti~~~~~G-wg-lt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~  141 (243)
T 3mbr_X           87 GFVYDLATLTPRARFRYPGEG-WA-LTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIK  141 (243)
T ss_dssp             EEEEETTTTEEEEEEECSSCC-CE-EEECSSCEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             EEEEECCcCcEEEEEeCCCCc-eE-EeeCCCEEEEECCCCeEEEEeCCCCeEEEEEE
Confidence            999999999998888743222 22 45677878888889999999999887766654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.19  E-value=0.00036  Score=45.43  Aligned_cols=135  Identities=7%  Similarity=-0.133  Sum_probs=77.4

Q ss_pred             ccEEEEEEeeCCCeEEEE-cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCe
Q psy1859          14 FQTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGY   91 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~   91 (162)
                      .+...+++++++..++.+ ...+.|..++.+...  .....  .. ..        .....++++|++ .++++-...+.
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~--~~~~~--~~-~~--------~~p~~ia~d~~~~~lyv~d~~~~~  102 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--PTTII--RQ-DL--------GSPEGIALDHLGRTIFWTDSQLDR  102 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--CEEEE--CT-TC--------CCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC--cEEEE--EC-CC--------CCccEEEEEecCCeEEEEECCCCE
Confidence            345688999976655554 455777774443221  11111  11 00        147889999975 56666667789


Q ss_pred             EEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecC---CCeEEEEeCCCceeeeeec-cCCCceeEEEecCC
Q psy1859          92 VNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS---DGYVNIWDGFNKKRLCQFH-RYDTGITSLCFSYD  162 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~pd  162 (162)
                      |.++++..................+ ++|++..|+.+..   .+.|..+++... ....+. ..-.....++++|+
T Consensus       103 I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~  177 (267)
T 1npe_A          103 IEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAF  177 (267)
T ss_dssp             EEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETT
T ss_pred             EEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCC
Confidence            9999986432221222122456778 9997666655543   368888887532 222221 22235677888764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.15  E-value=2.2e-05  Score=56.86  Aligned_cols=70  Identities=13%  Similarity=0.099  Sum_probs=50.4

Q ss_pred             ceEEEEecCCCCEEEE-ecCCCeEEEEeCCCcc------------ceeeeeecccceeEE-EcCCCCEEEEecCCCeEEE
Q psy1859          70 PVNAISFHQEYNTFAT-GGSDGYVNIWDGFNKK------------RLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNI  135 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~-~~~d~~v~~wd~~~~~------------~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~i  135 (162)
                      ...++.++|||+++++ +..+..|.++|+.+.+            ....+. -......+ |+|+|....+.-.|++|.+
T Consensus       278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~k  356 (595)
T 1fwx_A          278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVK  356 (595)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEE
T ss_pred             CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEE
Confidence            4678999999976554 5578999999998653            122222 23456677 9999944445568899999


Q ss_pred             EeCCC
Q psy1859         136 WDGFN  140 (162)
Q Consensus       136 wd~~~  140 (162)
                      ||+.+
T Consensus       357 wdi~~  361 (595)
T 1fwx_A          357 WNIED  361 (595)
T ss_dssp             EEHHH
T ss_pred             EEhhH
Confidence            99876

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.08  E-value=0.00049  Score=44.45  Aligned_cols=121  Identities=7%  Similarity=0.054  Sum_probs=74.8

Q ss_pred             CCeEEE-EcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccce
Q psy1859          25 KQGYVL-SSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRL  103 (162)
Q Consensus        25 ~~~l~~-~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~  103 (162)
                      ++.+.. .-.++.+.+  +|..+  .+.+.++....            ....+.+++..|+.+..++.|.++|..+.+.+
T Consensus        74 ~~~ly~ltw~~~~v~v--~D~~t--l~~~~ti~~~~------------~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~  137 (243)
T 3mbr_X           74 RDRLIQLTWRNHEGFV--YDLAT--LTPRARFRYPG------------EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQV  137 (243)
T ss_dssp             TTEEEEEESSSSEEEE--EETTT--TEEEEEEECSS------------CCCEEEECSSCEEEECSSSEEEEECTTTCCEE
T ss_pred             CCEEEEEEeeCCEEEE--EECCc--CcEEEEEeCCC------------CceEEeeCCCEEEEECCCCeEEEEeCCCCeEE
Confidence            444444 445566666  66655  44444433221            11233356666666667899999999998877


Q ss_pred             eeeeec--ccc---eeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccC-------------CCceeEEEecCC
Q psy1859         104 CQFHRY--DTG---ITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY-------------DTGITSLCFSYD  162 (162)
Q Consensus       104 ~~~~~~--~~~---v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------------~~~v~~v~~~pd  162 (162)
                      .++...  ..+   +..+ +. +|+.++..-.+..|.+-|.++++.+..+...             .+-.+.|+++|+
T Consensus       138 ~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~  214 (243)
T 3mbr_X          138 GSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE  214 (243)
T ss_dssp             EEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT
T ss_pred             EEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCC
Confidence            776532  222   2334 44 6666655557789999999999987776411             124578999874

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.05  E-value=0.00029  Score=46.09  Aligned_cols=124  Identities=6%  Similarity=-0.063  Sum_probs=78.2

Q ss_pred             eeCCCeEEEE-cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCc
Q psy1859          22 FPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNK  100 (162)
Q Consensus        22 ~~~~~~l~~~-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~  100 (162)
                      .++++.+... -.++.+.+  +|..+  .+.+.++....            ....+++++..|+.+..++.|.++|..+.
T Consensus       102 t~~g~~Ly~ltw~~~~v~V--~D~~T--l~~~~ti~~~~------------eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~  165 (268)
T 3nok_A          102 ASDGERLYQLTWTEGLLFT--WSGMP--PQRERTTRYSG------------EGWGLCYWNGKLVRSDGGTMLTFHEPDGF  165 (268)
T ss_dssp             EECSSCEEEEESSSCEEEE--EETTT--TEEEEEEECSS------------CCCCEEEETTEEEEECSSSEEEEECTTTC
T ss_pred             EEeCCEEEEEEccCCEEEE--EECCc--CcEEEEEeCCC------------ceeEEecCCCEEEEECCCCEEEEEcCCCC
Confidence            3344444444 44566666  66655  44444443321            11223356777777777999999999998


Q ss_pred             cceeeeeec--ccc---eeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccC-------------CCceeEEEecC
Q psy1859         101 KRLCQFHRY--DTG---ITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY-------------DTGITSLCFSY  161 (162)
Q Consensus       101 ~~~~~~~~~--~~~---v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------------~~~v~~v~~~p  161 (162)
                      +.+..+...  ..+   +..+ |. +|+..+....+..|.+-|.++++.+..+...             .+-.+.|+|+|
T Consensus       166 ~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp  244 (268)
T 3nok_A          166 ALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEP  244 (268)
T ss_dssp             CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECT
T ss_pred             eEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcC
Confidence            877776532  222   3445 55 7766665557889999999999987776421             13457899987


Q ss_pred             C
Q psy1859         162 D  162 (162)
Q Consensus       162 d  162 (162)
                      +
T Consensus       245 ~  245 (268)
T 3nok_A          245 G  245 (268)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.94  E-value=0.00023  Score=52.85  Aligned_cols=88  Identities=11%  Similarity=0.110  Sum_probs=50.7

Q ss_pred             EEEEeeCCCeEEEEcCCCcE-----------------EEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC
Q psy1859          18 CIKCFPNKQGYVLSSIEGRA-----------------AVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY   80 (162)
Q Consensus        18 ~i~~~~~~~~l~~~~~~g~i-----------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~   80 (162)
                      .+++.|++..++.++.++..                 .|+-+|..+  .+.+..+.......-..........+....+|
T Consensus       247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~T--G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG  324 (677)
T 1kb0_A          247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDT--GKYKWHYQETPGDNWDYTSTQPMILADIKIAG  324 (677)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT--CCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred             ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCC--CCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence            46788888888887765421                 233477766  34444433211000000001122333344466


Q ss_pred             ---CEEEEecCCCeEEEEeCCCccceeeee
Q psy1859          81 ---NTFATGGSDGYVNIWDGFNKKRLCQFH  107 (162)
Q Consensus        81 ---~~l~~~~~d~~v~~wd~~~~~~~~~~~  107 (162)
                         ..++.++.+|.++++|..+++.+..+.
T Consensus       325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~  354 (677)
T 1kb0_A          325 KPRKVILHAPKNGFFFVLDRTNGKFISAKN  354 (677)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             cEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence               678899999999999999998876543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.93  E-value=0.0022  Score=45.06  Aligned_cols=130  Identities=12%  Similarity=0.080  Sum_probs=72.7

Q ss_pred             EEEEEee-CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC-CC----
Q psy1859          17 RCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-DG----   90 (162)
Q Consensus        17 ~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~----   90 (162)
                      ..|+++| ++..|.++...+.|..  ++..........  .  ..        .....++|+++++.|..+.. ++    
T Consensus       140 ~~lavdp~~~g~Lyv~d~~~~I~~--id~~~~~v~~~~--~--~~--------~~P~~ia~d~~G~~lyvad~~~~~~~~  205 (430)
T 3tc9_A          140 VWLSFDPKNHNHLYLVGEQHPTRL--IDFEKEYVSTVY--S--GL--------SKVRTICWTHEADSMIITNDQNNNDRP  205 (430)
T ss_dssp             CEEEEETTEEEEEEEEEBTEEEEE--EETTTTEEEEEE--C--CC--------SCEEEEEECTTSSEEEEEECCSCTTSE
T ss_pred             CEEEECCCCCCeEEEEeCCCcEEE--EECCCCEEEEEe--c--CC--------CCcceEEEeCCCCEEEEEeCCCCcccc
Confidence            5788997 4555555544455554  665441122111  1  11        14789999999985444433 22    


Q ss_pred             eEEEEeCCCccce--eeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCceeeeeecc-CCCceeEEEecCC
Q psy1859          91 YVNIWDGFNKKRL--CQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQFHR-YDTGITSLCFSYD  162 (162)
Q Consensus        91 ~v~~wd~~~~~~~--~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~pd  162 (162)
                      .+...+ ..+...  ..+.. ......+ ++| ++.++++-..++.|..++..++........ .......++|+|+
T Consensus       206 ~v~~~~-~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pd  280 (430)
T 3tc9_A          206 NNYILT-RESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPS  280 (430)
T ss_dssp             EEEEEE-GGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTT
T ss_pred             eEEEEe-CCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCC
Confidence            333344 333322  22322 2345566 899 777777766788999999987654222221 2234678888875

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.89  E-value=0.0016  Score=42.46  Aligned_cols=118  Identities=6%  Similarity=0.047  Sum_probs=71.2

Q ss_pred             eeccccccEEEEEEeeCCCeEEE-EcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe
Q psy1859           8 RESSLKFQTRCIKCFPNKQGYVL-SSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG   86 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~~~~~l~~-~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~   86 (162)
                      ....+...+..++++|++..|.+ ...++.|..  +|... .......+.+..          ....|++.+++.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~--ld~~g-~v~~~i~l~g~~----------D~EGIa~~~~g~~~vs~   87 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVE--MTTNG-DLIRTIPLDFVK----------DLETIEYIGDNQFVISD   87 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEE--EETTC-CEEEEEECSSCS----------SEEEEEECSTTEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEE--EeCCC-CEEEEEecCCCC----------ChHHeEEeCCCEEEEEE
Confidence            33455567889999998765555 455555544  66642 222222222222          36788888888777776


Q ss_pred             cCCCeEEEEeCCCccce---eeee------ecccceeEE-EcCCCCEEEEecCCCeEEEEeC
Q psy1859          87 GSDGYVNIWDGFNKKRL---CQFH------RYDTGITSL-FHQEYNTFATGGSDGYVNIWDG  138 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~~~---~~~~------~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~  138 (162)
                      -.++.+.++++.....+   ....      ..+.....+ |+|.++.|+++.+.....+|.+
T Consensus        88 E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~  149 (255)
T 3qqz_A           88 ERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV  149 (255)
T ss_dssp             TTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred             CCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence            67788999987654321   2221      123345788 9998877777765544444444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.79  E-value=0.0023  Score=48.14  Aligned_cols=116  Identities=12%  Similarity=-0.026  Sum_probs=63.8

Q ss_pred             EEEEEeeCCCeEEEEcCCC--c-EEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec---CCC
Q psy1859          17 RCIKCFPNKQGYVLSSIEG--R-AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG---SDG   90 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~~g--~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~---~d~   90 (162)
                      ..++|+||++.|+....+.  . -.||.++..+........+.....        .....+.|+|+++.|+..+   ...
T Consensus       224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~--------~~~~~~~~SpDg~~l~~~~~~~~~~  295 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNP--------LFSAFMYKAADTNTLCIGSQSPETA  295 (751)
T ss_dssp             SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCT--------TCEEEEEECTTSSEEEEEEECSSCE
T ss_pred             eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCC--------ceEEEEEECCCCCEEEEEecCCCCc
Confidence            3578999998888776542  1 355556654422221122111110        1356789999998777554   345


Q ss_pred             eEEEEeCCCcc-ce--eee-eecccceeEE-EcCCCCEEEEecCC----CeEEEEeCCC
Q psy1859          91 YVNIWDGFNKK-RL--CQF-HRYDTGITSL-FHQEYNTFATGGSD----GYVNIWDGFN  140 (162)
Q Consensus        91 ~v~~wd~~~~~-~~--~~~-~~~~~~v~~~-~~~~~~~l~~~~~d----~~i~iwd~~~  140 (162)
                      .|+++|+.++. ..  ..+ .........+ |+..+.+++....+    ..|..+|+.+
T Consensus       296 ~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          296 EVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             EEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             eEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            78889988752 22  222 2223334444 54444444554443    3677778764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.78  E-value=0.00052  Score=45.75  Aligned_cols=116  Identities=13%  Similarity=0.124  Sum_probs=68.9

Q ss_pred             CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCcccee
Q psy1859          25 KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC  104 (162)
Q Consensus        25 ~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~  104 (162)
                      +..+.+++.++.+..  ++...   +..........         .+.++...+++. +..++.++.+..+|.. ++...
T Consensus       107 ~~~l~v~t~~~~l~~--~d~~g---~~~~~~~~~~~---------~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~  170 (330)
T 3hxj_A          107 EDILYVTSMDGHLYA--INTDG---TEKWRFKTKKA---------IYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKW  170 (330)
T ss_dssp             TTEEEEECTTSEEEE--ECTTS---CEEEEEECSSC---------CCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEE
T ss_pred             CCEEEEEecCCEEEE--EcCCC---CEEEEEcCCCc---------eeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeE
Confidence            455667777777776  55431   12222221111         345566666666 4556778999999998 76666


Q ss_pred             eeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEec
Q psy1859         105 QFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS  160 (162)
Q Consensus       105 ~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  160 (162)
                      .+......+..+ ..+++.+++..   +.|..+| .+++.+..+......+.++...
T Consensus       171 ~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~  223 (330)
T 3hxj_A          171 RFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAIS  223 (330)
T ss_dssp             EEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEEC
T ss_pred             EEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEEC
Confidence            655444555556 66777755444   7889999 6776665554433445444443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.75  E-value=0.0007  Score=49.27  Aligned_cols=61  Identities=16%  Similarity=0.078  Sum_probs=45.3

Q ss_pred             CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeecc
Q psy1859          88 SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR  149 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  149 (162)
                      .++.|..||..+++.+.++... ..+... +...+..++.++.|+.|+.+|.++++.+.++..
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence            3578999999999887776532 222222 333566788899999999999999999888763

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.68  E-value=0.0018  Score=48.22  Aligned_cols=83  Identities=6%  Similarity=0.054  Sum_probs=48.0

Q ss_pred             EEEEeeCCCeEEEEcCCCc-------------------EEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecC
Q psy1859          18 CIKCFPNKQGYVLSSIEGR-------------------AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ   78 (162)
Q Consensus        18 ~i~~~~~~~~l~~~~~~g~-------------------i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p   78 (162)
                      .+++.|+...+++++.++.                   +..  +|..+  .+.+..+.......-......++.......
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A--lD~~T--G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~  314 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA--VNADT--GEYVWHYQTTPGDAWDYTATQHMILAELPI  314 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE--EETTT--CCEEEEEESSTTCCSCCCCCSCEEEEEEEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE--EEccC--CceeEeeecCCcccccccCCCCcEEEeecc
Confidence            4678888888888877653                   444  67666  444444332110000000111122222223


Q ss_pred             CCC---EEEEecCCCeEEEEeCCCcccee
Q psy1859          79 EYN---TFATGGSDGYVNIWDGFNKKRLC  104 (162)
Q Consensus        79 ~~~---~l~~~~~d~~v~~wd~~~~~~~~  104 (162)
                      +|+   .++.++.+|.++++|.++++.+.
T Consensus       315 ~G~~~~~v~~~~~~G~l~~lD~~tG~~l~  343 (689)
T 1yiq_A          315 DGKPRKVLMQAPKNGFFYVIDRATGELLS  343 (689)
T ss_dssp             TTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             CCcEEEEEEEECCCCeEEEEECCCCCEec
Confidence            454   78899999999999999998763

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.67  E-value=0.0012  Score=48.83  Aligned_cols=117  Identities=14%  Similarity=0.105  Sum_probs=72.2

Q ss_pred             EEEEee-CCCeEEEEcCCC---------cEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859          18 CIKCFP-NKQGYVLSSIEG---------RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus        18 ~i~~~~-~~~~l~~~~~~g---------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      ..++.+ +++.++.|+.+.         .-.++.||..++.......+...+.        ....++++.+++++++.|+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~--------~~~~~~~~~~~g~lyv~GG  261 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD--------MFCPGISMDGNGQIVVTGG  261 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC--------CSSCEEEECTTSCEEEECS
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCC--------CccccccCCCCCCEEEeCC
Confidence            456677 788888876532         2245557776644444333222111        1234567788899999998


Q ss_pred             -CCCeEEEEeCCCccceee--eeecccceeEE-EcCCCCEEEEec-CC-----CeEEEEeCCCcee
Q psy1859          88 -SDGYVNIWDGFNKKRLCQ--FHRYDTGITSL-FHQEYNTFATGG-SD-----GYVNIWDGFNKKR  143 (162)
Q Consensus        88 -~d~~v~~wd~~~~~~~~~--~~~~~~~v~~~-~~~~~~~l~~~~-~d-----~~i~iwd~~~~~~  143 (162)
                       .+..+.+||..+.+....  +.... .-..+ ..+++++++.|+ .+     ..+.+||..+++-
T Consensus       262 ~~~~~v~~yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          262 NDAKKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             SSTTCEEEEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             CCCCceEEecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence             456899999887644322  22111 12233 567899999998 34     5789999987653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.66  E-value=0.00078  Score=49.16  Aligned_cols=61  Identities=21%  Similarity=0.222  Sum_probs=45.5

Q ss_pred             CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccC
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY  150 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  150 (162)
                      +|.|..||+.+++.+.+..... +...- ....+.+++.++.|+.++.+|.++|+.+.+++..
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~  526 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG  526 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC
Confidence            5889999999998877665332 22211 2335678888999999999999999998887643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.65  E-value=0.0023  Score=43.69  Aligned_cols=117  Identities=7%  Similarity=-0.038  Sum_probs=67.8

Q ss_pred             CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceece-EEEEecCCCCEEEEecCCCeEEEEeCCCccce
Q psy1859          25 KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV-NAISFHQEYNTFATGGSDGYVNIWDGFNKKRL  103 (162)
Q Consensus        25 ~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~  103 (162)
                      +..+++++.++.+..  +|..+  .+....................+ ..+..  .+..++.++.++.|..+|..+++.+
T Consensus        53 ~~~v~~~~~~g~v~a--~d~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~  126 (376)
T 3q7m_A           53 DNVVYAADRAGLVKA--LNADD--GKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVA  126 (376)
T ss_dssp             TTEEEEECTTSEEEE--EETTT--CCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCEEEEEcCCCeEEE--EEccC--CceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEE
Confidence            456777777887777  66655  33333322211000000000012 12222  3457777888999999999999877


Q ss_pred             eeeeecccceeEEEcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859         104 CQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus       104 ~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      ............... .+..+++++.++.|..+|.++++.+....
T Consensus       127 W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~  170 (376)
T 3q7m_A          127 WQTKVAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVN  170 (376)
T ss_dssp             EEEECSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEeCCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEe
Confidence            666533221111111 24578888889999999999998776654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.60  E-value=0.0075  Score=41.68  Aligned_cols=120  Identities=9%  Similarity=0.003  Sum_probs=68.0

Q ss_pred             cEEEEEEeeCCCeEEEEcCC--CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCe
Q psy1859          15 QTRCIKCFPNKQGYVLSSIE--GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGY   91 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~--g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~   91 (162)
                      ....|++.|.+..++.+...  +.|..  ++........+.. ..  .        .....|+++|++ .++++-+..+.
T Consensus       203 ~P~giavdp~~g~ly~td~~~~~~I~r--~~~dG~~~~~~~~-~~--~--------~~PnGlavd~~~~~lY~aD~~~~~  269 (386)
T 3v65_B          203 KPRAIALHPMEGTIYWTDWGNTPRIEA--SSMDGSGRRIIAD-TH--L--------FWPNGLTIDYAGRRMYWVDAKHHV  269 (386)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEE--EETTSCSCEEEEC-SS--C--------SCEEEEEEEGGGTEEEEEETTTTE
T ss_pred             CCcEEEEEcCCCeEEEeccCCCCEEEE--EeCCCCCcEEEEE-CC--C--------CCeeeEEEeCCCCEEEEEECCCCE
Confidence            34678888876665555433  34444  5443211222111 11  1        136789999865 55566667789


Q ss_pred             EEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859          92 VNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      |..+|+........+.........+ + .++.++++-...+.|..+|..+++.+..+.
T Consensus       270 I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          270 IERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             EEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            9999986533322222223345566 6 344555666677889989866666555544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.55  E-value=0.0043  Score=42.32  Aligned_cols=106  Identities=14%  Similarity=0.061  Sum_probs=67.7

Q ss_pred             CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCcccee
Q psy1859          25 KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC  104 (162)
Q Consensus        25 ~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~  104 (162)
                      +..+++++.++.+..  +|..+  .+........           ....+..  .+..+..++.++.+..+|..+++...
T Consensus       239 ~~~v~~~~~~g~l~~--~d~~t--G~~~w~~~~~-----------~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w  301 (376)
T 3q7m_A          239 NGVVFALAYNGNLTA--LDLRS--GQIMWKRELG-----------SVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLW  301 (376)
T ss_dssp             TTEEEEECTTSCEEE--EETTT--CCEEEEECCC-----------CEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEE
T ss_pred             CCEEEEEecCcEEEE--EECCC--CcEEeeccCC-----------CCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence            455677777888777  56544  3333332211           1233333  25667777789999999999998766


Q ss_pred             eeeecc-cceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeecc
Q psy1859         105 QFHRYD-TGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR  149 (162)
Q Consensus       105 ~~~~~~-~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  149 (162)
                      ...... ...... .  .+..++.++.+|.|..+|.++++.+.....
T Consensus       302 ~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          302 TQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV  346 (376)
T ss_dssp             EECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             eecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence            554211 122222 2  356788888999999999999988776654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.53  E-value=0.0077  Score=40.27  Aligned_cols=114  Identities=11%  Similarity=-0.090  Sum_probs=66.8

Q ss_pred             cEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcccceeeee-eeeeeeccCcccceeceEEEEecC-CCCEEEEecC---
Q psy1859          15 QTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYA-FKCHRIKEDGIEKIYPVNAISFHQ-EYNTFATGGS---   88 (162)
Q Consensus        15 ~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~---   88 (162)
                      ....+++.+ +++ |+++...+.+..  ++...+..+.... ..+...        .....+++.+ +|+++++-..   
T Consensus        81 ~p~gi~~~~~~g~-l~v~d~~~~i~~--~d~~~g~~~~~~~~~~~~~~--------~~p~~i~~d~~~G~l~v~d~~~~~  149 (322)
T 2fp8_A           81 RTYDISYNLQNNQ-LYIVDCYYHLSV--VGSEGGHATQLATSVDGVPF--------KWLYAVTVDQRTGIVYFTDVSTLY  149 (322)
T ss_dssp             CEEEEEEETTTTE-EEEEETTTEEEE--ECTTCEECEEEESEETTEEC--------SCEEEEEECTTTCCEEEEESCSSC
T ss_pred             CCceEEEcCCCCc-EEEEECCCCEEE--EeCCCCEEEEecccCCCCcc--------cccceEEEecCCCEEEEECCcccc
Confidence            456788887 555 444444444544  5654321111111 011111        1467899999 8987776532   


Q ss_pred             --------------CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEe-cCCCeEEEEeCCC
Q psy1859          89 --------------DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATG-GSDGYVNIWDGFN  140 (162)
Q Consensus        89 --------------d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~-~~d~~i~iwd~~~  140 (162)
                                    ++.|..+|..+++..... ..-.....+ ++|++++|+.+ ...+.|..+++..
T Consensus       150 ~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          150 DDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL-KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             CTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE-EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             cccccceehcccCCCceEEEEeCCCCEEEEec-cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence                          377888988765432222 222345567 99999866655 5668999999864

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.53  E-value=0.0044  Score=45.98  Aligned_cols=61  Identities=16%  Similarity=0.198  Sum_probs=46.8

Q ss_pred             CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccC
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY  150 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  150 (162)
                      +|.|..||+.+++.+.+...... .... +...+.++++++.|+.++.||.++++.+..+...
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~-~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTH-WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cceEEEEeCCCCcEEEEccCCCC-CcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence            48899999999988777654322 2222 4456788999999999999999999988877543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.52  E-value=0.0091  Score=41.92  Aligned_cols=114  Identities=14%  Similarity=0.004  Sum_probs=67.6

Q ss_pred             cEEEEEEeeCCCeEEEEcC-CC--cEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecC-CCCEEEEecCCC
Q psy1859          15 QTRCIKCFPNKQGYVLSSI-EG--RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ-EYNTFATGGSDG   90 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~-~g--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~   90 (162)
                      ....|+++++++.++++.. ++  ...+..++... .......+..  ..        ....++++| ++.++++-..++
T Consensus       180 ~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-~~~~~~~l~~--~~--------~p~giavdp~~g~lyv~d~~~~  248 (430)
T 3tc9_A          180 KVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-GFKVITELTK--GQ--------NCNGAETHPINGELYFNSWNAG  248 (430)
T ss_dssp             CEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG-TSCSEEEEEE--CS--------SCCCEEECTTTCCEEEEETTTT
T ss_pred             CcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC-ceeeeeeecc--CC--------CceEEEEeCCCCEEEEEECCCC
Confidence            3567899999986665543 22  22232233322 1111111111  11        367888999 678888877889


Q ss_pred             eEEEEeCCCccceeeeee-cccceeEE-EcCCCCEEEEe-cCCCeEEEEeCC
Q psy1859          91 YVNIWDGFNKKRLCQFHR-YDTGITSL-FHQEYNTFATG-GSDGYVNIWDGF  139 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~-~~~~v~~~-~~~~~~~l~~~-~~d~~i~iwd~~  139 (162)
                      .|..++...+........ .......+ |+|+|++|+.+ ...+.|..++..
T Consensus       249 ~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          249 QVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            999999886543222221 12346678 99999955444 567789887754

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.43  E-value=0.013  Score=40.46  Aligned_cols=133  Identities=7%  Similarity=-0.075  Sum_probs=73.1

Q ss_pred             EEEEEEeeCCCeEEEE-cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCeEE
Q psy1859          16 TRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVN   93 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v~   93 (162)
                      ...++|.+....|+.+ ...+.|..  ++......+.+.. ....          ....+++.+.+ .++++-...+.|.
T Consensus       118 ~~gl~~d~~~~~ly~~D~~~~~I~r--~~~~g~~~~~~~~-~~~~----------~p~glavd~~~g~lY~~d~~~~~I~  184 (386)
T 3v65_B          118 AIALDFHHRRELVFWSDVTLDRILR--ANLNGSNVEEVVS-TGLE----------SPGGLAVDWVHDKLYWTDSGTSRIE  184 (386)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEE--EETTSCCEEEEEC-SSCS----------CCCCEEEETTTTEEEEEETTTTEEE
T ss_pred             cEEEEEecCCCeEEEEeCCCCcEEE--EecCCCCcEEEEe-CCCC----------CccEEEEEeCCCeEEEEcCCCCeEE
Confidence            4578888765555544 44555555  4443211111111 1111          35678888754 5666667778899


Q ss_pred             EEeCCCccceeeeeecccceeEE-EcCCCCEEEEec-CC-CeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          94 IWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGG-SD-GYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      +.++........+...-.....+ ++|.+.+|+.+. .. +.|...++............-.....|+|+|
T Consensus       185 ~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~  255 (386)
T 3v65_B          185 VANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDY  255 (386)
T ss_dssp             ECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEG
T ss_pred             EEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeC
Confidence            98887543222232223456778 898766666554 33 6788888754322222222223467777775

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.42  E-value=0.012  Score=39.78  Aligned_cols=139  Identities=12%  Similarity=0.107  Sum_probs=81.8

Q ss_pred             EEEEEeeCCCeEEEEc-CCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEe---cCCCCEEEEec-----
Q psy1859          17 RCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF---HQEYNTFATGG-----   87 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~p~~~~l~~~~-----   87 (162)
                      .++.|.+....|..++ ..++|..  +++..+..... .+..-...  +. ....+..+.|   .|+++++++..     
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~--~~~~~~~~~~~-~~~~~s~~--g~-~~~~~sGl~~~~~D~~grL~vv~~~~~af   89 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEV--YNPKTQSHFNV-VIDGASSN--GD-GEQQMSGLSLLTHDNSKRLFAVMKNAKSF   89 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEE--ECTTTCCEEEE-CCTTTCCS--SC-CSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred             cCccCcCCCCEEEEEeccCCEEEE--EcCCCCeEEEE-ecCCcccc--CC-CcceeeEEEEeccCCCCcEEEEEcccccc
Confidence            5788988655555554 7899888  55542112222 22210000  00 0113689999   68877777543     


Q ss_pred             --------CCCeEEEEeCC---Cccceeeee--ecc-----------cceeEE-EcCCCCEEEEecCC-CeEEEEeCCCc
Q psy1859          88 --------SDGYVNIWDGF---NKKRLCQFH--RYD-----------TGITSL-FHQEYNTFATGGSD-GYVNIWDGFNK  141 (162)
Q Consensus        88 --------~d~~v~~wd~~---~~~~~~~~~--~~~-----------~~v~~~-~~~~~~~l~~~~~d-~~i~iwd~~~~  141 (162)
                              .+..|..+|+.   +++.+....  ...           .....+ ..++|+..++++.. +.|...+....
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence                    26789999999   776665443  111           236677 99999999988887 88777776533


Q ss_pred             eeeeeec--c----CCCceeEEEecCC
Q psy1859         142 KRLCQFH--R----YDTGITSLCFSYD  162 (162)
Q Consensus       142 ~~~~~~~--~----~~~~v~~v~~~pd  162 (162)
                       .+..+.  .    .....+.|+++||
T Consensus       170 -~~~~~~~~~~~~~~~~G~nGIv~~pd  195 (334)
T 2p9w_A          170 -TVSTFAWESGNGGQRPGYSGITFDPH  195 (334)
T ss_dssp             -CEEEEEECCCCSSSCCSCSEEEEETT
T ss_pred             -EEeeeeecCCCcccccCcceEEEeCC
Confidence             222221  1    1123567888775

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.36  E-value=0.015  Score=39.56  Aligned_cols=120  Identities=10%  Similarity=0.037  Sum_probs=66.9

Q ss_pred             cEEEEEEeeCCCeEEEEcC-C-CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCe
Q psy1859          15 QTRCIKCFPNKQGYVLSSI-E-GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGY   91 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~-~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~   91 (162)
                      ....|++.|.+..++.+.. . +.|...+.+...  .+.... ..  .        .....++++|++ .++++-...+.
T Consensus       160 ~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~--~~~~~~-~~--~--------~~PnGla~d~~~~~lY~aD~~~~~  226 (349)
T 3v64_C          160 KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRIIAD-TH--L--------FWPNGLTIDYAGRRMYWVDAKHHV  226 (349)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEESCC-SS--C--------SCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC--cEEEEE-CC--C--------CCcceEEEeCCCCEEEEEECCCCE
Confidence            3467889986655555433 3 445553333221  222111 11  1        136789999866 55556667789


Q ss_pred             EEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859          92 VNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      |..+|+........+.........+ + .++.++++-...+.|...+..+++.+..+.
T Consensus       227 I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          227 IERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             EEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            9999987533222222223345566 6 345555555567888888866665544443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.35  E-value=0.017  Score=40.07  Aligned_cols=138  Identities=9%  Similarity=-0.041  Sum_probs=74.7

Q ss_pred             cEEEEEEeeCCCeEEEE-cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC-CCEEEEecCCCeE
Q psy1859          15 QTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE-YNTFATGGSDGYV   92 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~~v   92 (162)
                      ....++|.+....|+.+ ...+.|..++.+......... .+.....        .....+++.+. ++++++-...+.|
T Consensus       113 ~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~-~~~~~~~--------~~p~glavD~~~~~lY~~d~~~~~I  183 (400)
T 3p5b_L          113 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD-TVISRDI--------QAPDGLAVDWIHSNIYWTDSVLGTV  183 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCE-EEECSSC--------SCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             cceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcce-EEEeCCC--------CCcccEEEEecCCceEEEECCCCeE
Confidence            45678888865555544 444666554333211000001 1111011        14678888874 5666677778899


Q ss_pred             EEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecC--CCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          93 NIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS--DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      .+.++........+.........+ ++|.+.+|+....  .+.|...++............-.....|+++|
T Consensus       184 ~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~  255 (400)
T 3p5b_L          184 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL  255 (400)
T ss_dssp             EEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEET
T ss_pred             EEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEe
Confidence            999987544333333333456778 9997666666542  36888888854332222222223566777765

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.35  E-value=0.00096  Score=44.44  Aligned_cols=77  Identities=10%  Similarity=0.087  Sum_probs=51.3

Q ss_pred             CCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEE
Q psy1859          80 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLC  158 (162)
Q Consensus        80 ~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~  158 (162)
                      +..+..++.++.+..+|.. ++...........+..+ ..+++. ++.++.++.|..+|.. ++.+..+......+.++.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence            4566778888999999988 76665555444444555 666666 5567778999999998 776655544333444444


Q ss_pred             e
Q psy1859         159 F  159 (162)
Q Consensus       159 ~  159 (162)
                      +
T Consensus       184 ~  184 (330)
T 3hxj_A          184 I  184 (330)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.34  E-value=0.0071  Score=44.35  Aligned_cols=61  Identities=13%  Similarity=0.117  Sum_probs=44.3

Q ss_pred             CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeecc
Q psy1859          88 SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR  149 (162)
Q Consensus        88 ~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  149 (162)
                      ..|.|..||+.+++.+.+.... .+...- ....+.+++.++.|+.++.+|.++|+.+.+++.
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l  512 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence            3478999999999877666422 111111 233577888899999999999999999888763

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.34  E-value=0.013  Score=38.24  Aligned_cols=143  Identities=10%  Similarity=0.041  Sum_probs=77.3

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC--eE
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG--YV   92 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~--~v   92 (162)
                      ....|++.+++.++++.-.++.+.++..+.... ......... ..  ..........+++|+|.+..|.++....  .|
T Consensus        71 D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~-i~~~~~~~~-~~--~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i  146 (255)
T 3qqz_A           71 DLETIEYIGDNQFVISDERDYAIYVISLTPNSE-VKILKKIKI-PL--QESPTNCGFEGLAYSRQDHTFWFFKEKNPIEV  146 (255)
T ss_dssp             SEEEEEECSTTEEEEEETTTTEEEEEEECTTCC-EEEEEEEEC-CC--SSCCCSSCCEEEEEETTTTEEEEEEESSSEEE
T ss_pred             ChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe-eeeeeeecc-cc--ccccccCCcceEEEeCCCCEEEEEECcCCceE
Confidence            446688888887666655667777755554331 011111110 00  0001122578999999986655555443  44


Q ss_pred             EEEeCC-Cccceeeeee-------cccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCceeeeeeccCC---------Cc
Q psy1859          93 NIWDGF-NKKRLCQFHR-------YDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD---------TG  153 (162)
Q Consensus        93 ~~wd~~-~~~~~~~~~~-------~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------~~  153 (162)
                      +.|+-. ....+..+..       ....+..+ ++| .+.+++.+.....|.++|.. ++.+..+....         ..
T Consensus       147 ~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~q  225 (255)
T 3qqz_A          147 YKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQ  225 (255)
T ss_dssp             EEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCS
T ss_pred             EEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCC
Confidence            455411 1111221111       12346677 888 55667777788899999975 55555543221         14


Q ss_pred             eeEEEecCC
Q psy1859         154 ITSLCFSYD  162 (162)
Q Consensus       154 v~~v~~~pd  162 (162)
                      .-.|+|.|+
T Consensus       226 pEGia~d~~  234 (255)
T 3qqz_A          226 AEGVAMDAS  234 (255)
T ss_dssp             EEEEEECTT
T ss_pred             CCeeEECCC
Confidence            567888764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.33  E-value=0.014  Score=40.97  Aligned_cols=130  Identities=8%  Similarity=-0.003  Sum_probs=68.4

Q ss_pred             EEEEEeeC--CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC---Ce
Q psy1859          17 RCIKCFPN--KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD---GY   91 (162)
Q Consensus        17 ~~i~~~~~--~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d---~~   91 (162)
                      ..|++.|+  ...|..+...+.|+.  ++...  ........  ..        .....++++++++++++....   ..
T Consensus       142 ~gvavd~~s~~g~Lyv~D~~~~I~~--id~~~--g~v~~~~~--~~--------~~P~giavd~dG~lyVad~~~~~~~~  207 (433)
T 4hw6_A          142 WRMMFDPNSNYDDLYWVGQRDAFRH--VDFVN--QYVDIKTT--NI--------GQCADVNFTLNGDMVVVDDQSSDTNT  207 (433)
T ss_dssp             CEEEECTTTTTCEEEEECBTSCEEE--EETTT--TEEEEECC--CC--------SCEEEEEECTTCCEEEEECCSCTTSE
T ss_pred             ceEEEccccCCCEEEEEeCCCCEEE--EECCC--CEEEEeec--CC--------CCccEEEECCCCCEEEEcCCCCcccc
Confidence            47888884  344555444366665  66543  22211111  11        147899999999966555422   12


Q ss_pred             -EEEEeCCCccce--eeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCCCceeeeee-c-cCCCceeEEEecCC
Q psy1859          92 -VNIWDGFNKKRL--CQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQF-H-RYDTGITSLCFSYD  162 (162)
Q Consensus        92 -v~~wd~~~~~~~--~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~-~~~~~v~~v~~~pd  162 (162)
                       +...+.. +...  ..+. .......+ ++| +|.++++-..++.|+.+|..++.....+ . ........++|+||
T Consensus       208 gv~~~~~~-~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpd  283 (433)
T 4hw6_A          208 GIYLFTRA-SGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPT  283 (433)
T ss_dssp             EEEEECGG-GTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTT
T ss_pred             eEEEEECC-CCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCC
Confidence             3333322 2111  1121 22334456 888 6766666667789999999766542222 1 11122345888775

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.33  E-value=0.014  Score=41.77  Aligned_cols=113  Identities=13%  Similarity=0.035  Sum_probs=62.1

Q ss_pred             EEEEEEee-CCCeEEEEcCC-CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEe-------cCCCCEEEEe
Q psy1859          16 TRCIKCFP-NKQGYVLSSIE-GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF-------HQEYNTFATG   86 (162)
Q Consensus        16 ~~~i~~~~-~~~~l~~~~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~p~~~~l~~~   86 (162)
                      ...|++.| +...|+++... +.|  +.+|..+.....+..  ...      ........++|       ++++..|+.+
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i--~~ID~~~~~v~~l~~--~~~------~~~~~p~~ia~~~~~~~~d~~G~~lyva  210 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAI--QLIDLKNRMLSSPLN--INT------IPTNRIRSIAFNKKIEGYADEAEYMIVA  210 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEE--EEEETTTTEEEEEEC--CTT------SSCSBEEEEEECCCBTTTBCTTCEEEEE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeE--EEEECCCCEEEEEEc--cCc------cccCCCcEEEEeecccccCCCCCEEEEE
Confidence            46789998 34545554433 444  447765522222221  110      01114789999       9999855555


Q ss_pred             cCCC-------eEEEEeCCC-ccce-----eeeeecccceeEE-EcC-CCCEEEEecCCCeEEEEeCC
Q psy1859          87 GSDG-------YVNIWDGFN-KKRL-----CQFHRYDTGITSL-FHQ-EYNTFATGGSDGYVNIWDGF  139 (162)
Q Consensus        87 ~~d~-------~v~~wd~~~-~~~~-----~~~~~~~~~v~~~-~~~-~~~~l~~~~~d~~i~iwd~~  139 (162)
                      ...+       .+.+.+... +...     ..+... .....+ ++| ++.++++-..++.|..+|+.
T Consensus       211 d~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          211 IDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             ECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred             eCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence            4332       366666443 2222     223222 233456 888 45556666688899999987

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.29  E-value=0.016  Score=38.65  Aligned_cols=77  Identities=5%  Similarity=-0.119  Sum_probs=50.0

Q ss_pred             ceEEEEecCCCCE-EEEecCCCeEEEEeCCCcc--ceeeeeecccceeEE-EcCCCCEEEEecC----------CCeEEE
Q psy1859          70 PVNAISFHQEYNT-FATGGSDGYVNIWDGFNKK--RLCQFHRYDTGITSL-FHQEYNTFATGGS----------DGYVNI  135 (162)
Q Consensus        70 ~v~~~~~~p~~~~-l~~~~~d~~v~~wd~~~~~--~~~~~~~~~~~v~~~-~~~~~~~l~~~~~----------d~~i~i  135 (162)
                      ....++++|+++. +++-..++.|..|++....  ....+....+ ...+ ++++|.+.++...          .+.|..
T Consensus       186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~  264 (322)
T 2fp8_A          186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIK  264 (322)
T ss_dssp             CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEE
T ss_pred             cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEE
Confidence            3568999999975 4555677899999987532  1122221223 6667 9999987666544          466888


Q ss_pred             EeCCCceeeeeec
Q psy1859         136 WDGFNKKRLCQFH  148 (162)
Q Consensus       136 wd~~~~~~~~~~~  148 (162)
                      +|. .++.+..+.
T Consensus       265 ~d~-~G~~~~~~~  276 (322)
T 2fp8_A          265 FDE-FGNILEVIP  276 (322)
T ss_dssp             ECT-TSCEEEEEE
T ss_pred             ECC-CCCEEEEEE
Confidence            887 466655554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.26  E-value=0.02  Score=38.95  Aligned_cols=132  Identities=6%  Similarity=-0.082  Sum_probs=73.2

Q ss_pred             EEEEEEeeCCCeEEEE-cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCeEE
Q psy1859          16 TRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVN   93 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v~   93 (162)
                      ...++|.+....|+.+ ...+.|..  ++......+.+.. .+..          ....+++.+.+ +++++-...+.|.
T Consensus        75 ~~~l~~d~~~~~ly~~D~~~~~I~r--~~~~g~~~~~~~~-~~~~----------~p~glavd~~~g~ly~~d~~~~~I~  141 (349)
T 3v64_C           75 AIALDFHHRRELVFWSDVTLDRILR--ANLNGSNVEEVVS-TGLE----------SPGGLAVDWVHDKLYWTDSGTSRIE  141 (349)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEE--EETTSCSCEEEEC-SSCS----------CCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             eEEEEEeccccEEEEEeccCCceEE--EecCCCCceEEEe-CCCC----------CccEEEEecCCCeEEEEcCCCCeEE
Confidence            4677888765555544 44555555  4433211222111 1111          35688888754 5666767788999


Q ss_pred             EEeCCCccceeeeeecccceeEE-EcCCCCEEEEec-CC-CeEEEEeCCCceeeeee-ccCCCceeEEEecC
Q psy1859          94 IWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGG-SD-GYVNIWDGFNKKRLCQF-HRYDTGITSLCFSY  161 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d-~~i~iwd~~~~~~~~~~-~~~~~~v~~v~~~p  161 (162)
                      +.++........+...-.....+ ++|.+..|+... .. +.|...++.... ...+ ...-.....++|+|
T Consensus       142 ~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~  212 (349)
T 3v64_C          142 VANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDY  212 (349)
T ss_dssp             EEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEET
T ss_pred             EEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeC
Confidence            99987543222222223456778 998666555554 44 788888875432 2222 22223467788775

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.25  E-value=0.019  Score=38.44  Aligned_cols=136  Identities=9%  Similarity=-0.051  Sum_probs=74.1

Q ss_pred             cEEEEEEeeCCCeEEEE-cCCCcEEEEEecCCc--ccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCC
Q psy1859          15 QTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGP--EMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDG   90 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~-~~~g~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~   90 (162)
                      ....++|.+.+..++.+ ...+.|..++.+...  ......  +.. ..        .....+++.+.+ +++++-..++
T Consensus        31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~--~~~-~~--------~~p~glavd~~~~~ly~~d~~~~   99 (316)
T 1ijq_A           31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--ISR-DI--------QAPDGLAVDWIHSNIYWTDSVLG   99 (316)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE--ECS-SC--------SCCCEEEEETTTTEEEEEETTTT
T ss_pred             ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE--EeC-CC--------CCcCEEEEeecCCeEEEEECCCC
Confidence            34678899865555544 445667664443210  001111  110 00        135788888654 5666667789


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCC--CeEEEEeCCCceeeeee-ccCCCceeEEEecCC
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSD--GYVNIWDGFNKKRLCQF-HRYDTGITSLCFSYD  162 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~-~~~~~~v~~v~~~pd  162 (162)
                      .|.+.++........+.........+ ++|.+..++.+...  +.|...++. +.....+ ...-.....++|+|+
T Consensus       100 ~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~  174 (316)
T 1ijq_A          100 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLL  174 (316)
T ss_dssp             EEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETT
T ss_pred             EEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEecc
Confidence            99999987433222222233456778 99876666555432  688888875 3322222 122234667777753

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.18  E-value=0.046  Score=41.53  Aligned_cols=92  Identities=9%  Similarity=-0.057  Sum_probs=56.7

Q ss_pred             ceEEEEecCCC-CEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecC--CCeEEEEeCCCceeee
Q psy1859          70 PVNAISFHQEY-NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS--DGYVNIWDGFNKKRLC  145 (162)
Q Consensus        70 ~v~~~~~~p~~-~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~  145 (162)
                      ....|++.+.+ +++++-...+.|.+.++........+.........| ++|.+.+|+.+..  .+.|...++.......
T Consensus       472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~  551 (791)
T 3m0c_C          472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  551 (791)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE
Confidence            36688888776 566677778999999987543322333333457788 9997666666542  3688888885433222


Q ss_pred             eeccCCCceeEEEecC
Q psy1859         146 QFHRYDTGITSLCFSY  161 (162)
Q Consensus       146 ~~~~~~~~v~~v~~~p  161 (162)
                      .+...-.....|++.+
T Consensus       552 lv~~~l~~P~GLavD~  567 (791)
T 3m0c_C          552 LVTENIQWPNGITLDL  567 (791)
T ss_dssp             EECSSCSCEEEEEEET
T ss_pred             EEeCCCCCceEEEEec
Confidence            2222223566666654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.14  E-value=0.026  Score=37.97  Aligned_cols=133  Identities=5%  Similarity=-0.105  Sum_probs=72.5

Q ss_pred             EEEEEEeeCCCeEE-EEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC-CCEEEEecCCCeEE
Q psy1859          16 TRCIKCFPNKQGYV-LSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE-YNTFATGGSDGYVN   93 (162)
Q Consensus        16 ~~~i~~~~~~~~l~-~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~~v~   93 (162)
                      ...+.|.+....|+ +-...+.|..++.+...  ...... . ...        ....++++.+. +.++++-...+.|.
T Consensus        37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~--~~~~~~-~-~~l--------~~p~glavd~~~g~ly~~d~~~~~I~  104 (318)
T 3sov_A           37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE--SVQNVV-V-SGL--------LSPDGLACDWLGEKLYWTDSETNRIE  104 (318)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETTSSS--CCCEEE-E-ECC--------SCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             cEEEEEEeCCCEEEEEECCCCcEEEEEccCCC--ceEEEE-c-CCC--------CCccEEEEEcCCCeEEEEECCCCEEE
Confidence            34677888544444 43445666654333221  111111 1 110        13667888874 46666767788999


Q ss_pred             EEeCCCccceeeeeecccceeEE-EcCCCCEEEEec--CCCeEEEEeCCCceeeeee-ccCCCceeEEEecC
Q psy1859          94 IWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGG--SDGYVNIWDGFNKKRLCQF-HRYDTGITSLCFSY  161 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~-~~~~~~v~~v~~~p  161 (162)
                      ++++........+.........+ ++|.+.+|+.+.  ..+.|...++... ....+ ...-.....++|+|
T Consensus       105 ~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~l~~Pnglavd~  175 (318)
T 3sov_A          105 VSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPNGLTLDY  175 (318)
T ss_dssp             EEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEET
T ss_pred             EEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEEEECCCCCccEEEEec
Confidence            99987533222222233456677 888766666655  3578888887532 22222 22223456777776

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.11  E-value=0.03  Score=39.29  Aligned_cols=116  Identities=14%  Similarity=0.130  Sum_probs=67.3

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCc-ccc-------eeeeeeeeeeeccCcccceeceEEEEecCCC---CEE
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGP-EMQ-------KMKYAFKCHRIKEDGIEKIYPVNAISFHQEY---NTF   83 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~l   83 (162)
                      .+..+..+|+|++|+..+. ..|.|..+.... ...       .....+....   .......+|..+.|||-+   ..|
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~---~~~~~~s~I~qVlWHPl~~~ds~L  142 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE---EEVGPKSSIKKVLFHPKSYRDSCI  142 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG---CC--CCCCEEEEEECTTBGGGCEE
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCC---cccCCCCceeEEEeccccCCCCeE
Confidence            5677999999999988654 566763333111 000       0011111110   001123479999999975   589


Q ss_pred             EEecCCCeEEEEeCCCc--cceeeee---------ecccceeEE-EcCCCCEEEEe--cCCCeEEE
Q psy1859          84 ATGGSDGYVNIWDGFNK--KRLCQFH---------RYDTGITSL-FHQEYNTFATG--GSDGYVNI  135 (162)
Q Consensus        84 ~~~~~d~~v~~wd~~~~--~~~~~~~---------~~~~~v~~~-~~~~~~~l~~~--~~d~~i~i  135 (162)
                      ++-..|+.|++||+...  ++. .+.         .....+.++ |.+++-.|...  ...|.|+-
T Consensus       143 VVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          143 VVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             EEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             EEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            99999999999999863  222 221         112456677 87766545443  35565543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.06  E-value=0.032  Score=37.79  Aligned_cols=71  Identities=13%  Similarity=0.112  Sum_probs=52.9

Q ss_pred             ceEEEEecCCCCEEEEecCC-CeEEEEeCCCccceeeeee------cccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc
Q psy1859          70 PVNAISFHQEYNTFATGGSD-GYVNIWDGFNKKRLCQFHR------YDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK  141 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d-~~v~~wd~~~~~~~~~~~~------~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~  141 (162)
                      ....++..++|+..++++.. +.|...+.... .+..+..      .....+.+ ++|+|..|++....+.|..+|+++.
T Consensus       138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          138 GVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             CCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            47899999999999999888 88887776533 3332211      12235678 9999999888877999999998743

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.03  E-value=0.044  Score=38.52  Aligned_cols=90  Identities=13%  Similarity=0.120  Sum_probs=60.5

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCcc----------c--eeeeee------cccceeEE-EcC---CCCEEEEe
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKK----------R--LCQFHR------YDTGITSL-FHQ---EYNTFATG  127 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~----------~--~~~~~~------~~~~v~~~-~~~---~~~~l~~~  127 (162)
                      .+..+..+|+|.+||..+ +..|.+-.+..+.          .  .+.+.-      ...+|..+ |||   .+.-|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            377899999999998875 4578887776321          1  112221      13568888 999   45689999


Q ss_pred             cCCCeEEEEeCCCce--eeeeec---------cCCCceeEEEecC
Q psy1859         128 GSDGYVNIWDGFNKK--RLCQFH---------RYDTGITSLCFSY  161 (162)
Q Consensus       128 ~~d~~i~iwd~~~~~--~~~~~~---------~~~~~v~~v~~~p  161 (162)
                      ..|+.|++||+....  +. .+.         .....|.+++|.+
T Consensus       146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~  189 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK  189 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT
T ss_pred             ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC
Confidence            999999999997521  12 221         1225688888875

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.02  E-value=0.021  Score=42.39  Aligned_cols=85  Identities=8%  Similarity=0.147  Sum_probs=47.4

Q ss_pred             EEEEeeCCCeEEEEcCCCc-----------------EEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC
Q psy1859          18 CIKCFPNKQGYVLSSIEGR-----------------AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY   80 (162)
Q Consensus        18 ~i~~~~~~~~l~~~~~~g~-----------------i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~   80 (162)
                      .+++.|+...++.++.++.                 ..|+-+|..+  .+.+..+.......-......+.....+..++
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~t--G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G  311 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDT--GKLAWHYQVTPGDSWDFTATQQITLAELNIDG  311 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT--CCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCC--CceeeEeecCCCccccccCCCCcEEEEeccCC
Confidence            3677887788888776653                 0233477766  44444433211000000000122222333355


Q ss_pred             C---EEEEecCCCeEEEEeCCCcccee
Q psy1859          81 N---TFATGGSDGYVNIWDGFNKKRLC  104 (162)
Q Consensus        81 ~---~l~~~~~d~~v~~wd~~~~~~~~  104 (162)
                      +   .++.++.+|.++++|..+|+.+.
T Consensus       312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~  338 (668)
T 1kv9_A          312 KPRKVLMQAPKNGFFYVLDRTNGKLIS  338 (668)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             cEEEEEEEECCCCEEEEEECCCCCEec
Confidence            4   68889999999999999998763

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.01  E-value=0.034  Score=36.93  Aligned_cols=113  Identities=11%  Similarity=0.027  Sum_probs=65.7

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC--Ce
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD--GY   91 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d--~~   91 (162)
                      .....++|.++++.+++-..++.|..  ++.... ......  ..          ..+..+++.++++++++....  ..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~--~d~~g~-~~~~~~--~~----------~~p~gia~~~dG~l~vad~~~~~~~   96 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVS--ITPDGN-QQIHAT--VE----------GKVSGLAFTSNGDLVATGWNADSIP   96 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEE--ECTTCC-EEEEEE--CS----------SEEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEE--ECCCCc-eEEEEe--CC----------CCceeEEEcCCCcEEEEeccCCcce
Confidence            34567899999886666667777766  555431 111111  11          147889999999877665432  35


Q ss_pred             EEEEeCCCccceeeeeec-ccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc
Q psy1859          92 VNIWDGFNKKRLCQFHRY-DTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK  141 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~~-~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~  141 (162)
                      |..+|..+++........ ......+ ..+++..+++-..++.|..+|..++
T Consensus        97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A           97 VVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             EEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence            777777766543222111 1122333 4445544555546788988888654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.96  E-value=0.033  Score=39.16  Aligned_cols=70  Identities=7%  Similarity=-0.077  Sum_probs=47.9

Q ss_pred             ceEEEEecC-CCCEEEEecCCCeEEEEeCCCccceeeeeec--ccceeEE-EcCCCCEEEEe-cCCCeEEEEeCC
Q psy1859          70 PVNAISFHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQFHRY--DTGITSL-FHQEYNTFATG-GSDGYVNIWDGF  139 (162)
Q Consensus        70 ~v~~~~~~p-~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~--~~~v~~~-~~~~~~~l~~~-~~d~~i~iwd~~  139 (162)
                      ....++++| ++.++++-..++.|+.+|..++.....+...  ......+ |+|++++|+.+ ...+.|+.++..
T Consensus       229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            356788999 6777777778899999998866542222211  1223357 99999955554 466789997764

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.94  E-value=0.016  Score=37.03  Aligned_cols=108  Identities=9%  Similarity=-0.015  Sum_probs=61.8

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEE
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI   94 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~   94 (162)
                      ..+.++++|++...++  .+|.  ||..+..+.....-+....+-..    .--....++.|.|+|.+.++  .||.|+-
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~--Ly~~~~~t~~~~~W~~s~t~IG~----~Gw~~F~a~~fD~~G~LYav--~dG~iyr  111 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDK--IYKGTPPTHDNDNWMGRAKKIGN----GGWNQFQFLFFDPNGYLYAV--SKDKLYK  111 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTE--EEEESCCCSTTCCHHHHCEEEEC----SCGGGCSEEEECTTSCEEEE--ETTEEEE
T ss_pred             cceeEEECCCccEEEE--eCCe--EEEECCCCCCcccccccccEecc----cccccceEEEECCCCCEEEe--CCCEEEE
Confidence            4568999999887666  5564  55576643111111110000000    00002478999999988888  5699988


Q ss_pred             EeCCCccc---ee---ee-eecccceeEE-EcCCCCEEEEecCCCeEE
Q psy1859          95 WDGFNKKR---LC---QF-HRYDTGITSL-FHQEYNTFATGGSDGYVN  134 (162)
Q Consensus        95 wd~~~~~~---~~---~~-~~~~~~v~~~-~~~~~~~l~~~~~d~~i~  134 (162)
                      ++..+...   +.   .+ ...-..+..+ +.|+|.+.++.  |+.+.
T Consensus       112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             eCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            87643211   11   11 1122467788 99999877777  66653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.92  E-value=0.006  Score=45.54  Aligned_cols=78  Identities=10%  Similarity=-0.042  Sum_probs=48.2

Q ss_pred             ceEEEEecCCC-CEEEEecCCCeEEEEeCCCccceeeeee--cccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeee
Q psy1859          70 PVNAISFHQEY-NTFATGGSDGYVNIWDGFNKKRLCQFHR--YDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLC  145 (162)
Q Consensus        70 ~v~~~~~~p~~-~~l~~~~~d~~v~~wd~~~~~~~~~~~~--~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  145 (162)
                      ....|+|+|++ .++++-...+.|..+++........+..  .......+ +..+ .++++....+.|..+|..+++.+.
T Consensus       541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~  619 (699)
T 1n7d_A          541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN  619 (699)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred             CccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence            35689999875 6666767788999999864322222211  11222333 4332 344455566899999988888766


Q ss_pred             eec
Q psy1859         146 QFH  148 (162)
Q Consensus       146 ~~~  148 (162)
                      ++.
T Consensus       620 ~i~  622 (699)
T 1n7d_A          620 LLA  622 (699)
T ss_dssp             CCC
T ss_pred             Eee
Confidence            664

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.91  E-value=0.045  Score=37.32  Aligned_cols=103  Identities=10%  Similarity=0.050  Sum_probs=56.0

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC---C-CEEEEecCC-
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE---Y-NTFATGGSD-   89 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~-~~l~~~~~d-   89 (162)
                      ....+++.|+|+.+++ ...|.|.+++ + .+  ...+..+....      .-......|+++|+   + .++++-... 
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~-~-g~--~~~~~~~~v~~------~g~~~p~gia~~pdf~~~g~lYv~~~~~~  100 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR-E-GR--LSTYAELSVYH------RGESGLLGLALHPRFPQEPYVYAYRTVAE  100 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE-T-TE--EEEEEECCCCC------STTCSEEEEEECTTTTTSCEEEEEEEECT
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE-C-CC--ccEeecceEee------cCCCCceeEEECCCCCCCCEEEEEEecCC
Confidence            3468999999985555 5568888744 2 11  22222111000      01125789999998   4 444444432 


Q ss_pred             ----CeEEEEeCCCcc-----ce-eeeee---cccceeEE-EcCCCCEEEEec
Q psy1859          90 ----GYVNIWDGFNKK-----RL-CQFHR---YDTGITSL-FHQEYNTFATGG  128 (162)
Q Consensus        90 ----~~v~~wd~~~~~-----~~-~~~~~---~~~~v~~~-~~~~~~~l~~~~  128 (162)
                          +.|..++...+.     .+ ..+..   .......+ |.|||.+.++.+
T Consensus       101 ~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          101 GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence                678888876431     11 11221   11123567 999997666643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.83  E-value=0.053  Score=36.46  Aligned_cols=119  Identities=12%  Similarity=0.021  Sum_probs=65.5

Q ss_pred             cEEEEEEeeCCCeEEEEcC--CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCe
Q psy1859          15 QTRCIKCFPNKQGYVLSSI--EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGY   91 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~--~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~   91 (162)
                      ....|++.|.+..++.+..  .+.|..  ++......+.... ..  .        .....++++|++ .++.+-+..+.
T Consensus       123 ~P~giavdp~~g~ly~td~~~~~~I~r--~~~dG~~~~~~~~-~~--l--------~~Pnglavd~~~~~lY~aD~~~~~  189 (318)
T 3sov_A          123 QPRAIALDPSSGFMYWTDWGEVPKIER--AGMDGSSRFIIIN-SE--I--------YWPNGLTLDYEEQKLYWADAKLNF  189 (318)
T ss_dssp             SEEEEEEEGGGTEEEEEECSSSCEEEE--EETTSCSCEEEEC-SS--C--------SCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CccEEEEeCCCCEEEEEecCCCCEEEE--EEcCCCCeEEEEE-CC--C--------CCccEEEEeccCCEEEEEECCCCE
Confidence            3467888886555555543  344444  4433211221111 11  1        136789999966 55556667889


Q ss_pred             EEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeee
Q psy1859          92 VNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQF  147 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  147 (162)
                      |..+|+..................+ +. .+.++++-...+.|..++..+++....+
T Consensus       190 I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          190 IHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             EEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEE
Confidence            9999986432222222223344455 53 3344555556788999998777654444

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.79  E-value=0.063  Score=36.77  Aligned_cols=115  Identities=9%  Similarity=0.050  Sum_probs=69.8

Q ss_pred             ccEEEEEEee--CCC-eEEEE-cC--CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859          14 FQTRCIKCFP--NKQ-GYVLS-SI--EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus        14 ~~~~~i~~~~--~~~-~l~~~-~~--~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      .+..-|.+.+  ++. +|+++ ..  +..+.+|.++...........+.+....        ....+++.++|.++++..
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~--------~pND~~v~~~G~fyvt~~  183 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLP--------SVNDIVAVGPEHFYATND  183 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCS--------SEEEEEEEETTEEEEEES
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCC--------CCceEEEeCCCCEEecCC
Confidence            3455566655  343 34443 22  4678888888765333333333333222        578999999998777653


Q ss_pred             -----------------CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEec-CCCeEEEEeCC
Q psy1859          88 -----------------SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGG-SDGYVNIWDGF  139 (162)
Q Consensus        88 -----------------~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~iwd~~  139 (162)
                                       ..|.|..+|.  ++ +..+...-.....+ |+||++.++.+. ..+.|..|++.
T Consensus       184 ~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          184 HYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             CSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             cEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence                             1255655654  32 33332333456678 999998777765 56889999985

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.74  E-value=0.0066  Score=45.33  Aligned_cols=134  Identities=8%  Similarity=-0.051  Sum_probs=68.0

Q ss_pred             EEEEEEeeCCCeEEEE-cCCCcEEEEEecCCc--ccceeeeeeeeeeeccCcccceeceEEEEecCC-CCEEEEecCCCe
Q psy1859          16 TRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGP--EMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE-YNTFATGGSDGY   91 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~-~~~g~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~~   91 (162)
                      ...|+|.+.+..|+.+ ...+.|..++.+...  ........ ...          .....|++.+. ++++++-...+.
T Consensus       408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~-~~~----------~~P~glavD~~~g~LY~tD~~~~~  476 (699)
T 1n7d_A          408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDI----------QAPDGLAVDWIHSNIYWTDSVLGT  476 (699)
T ss_dssp             CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC-SCC------------CCCEECCCSSSBCEECCTTTSC
T ss_pred             eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe-CCC----------CCcceEEEEeeCCcEEEEeccCCe
Confidence            3467788766555554 344666664443210  00111110 000          12557888854 466666667789


Q ss_pred             EEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecC-C-CeEEEEeCCCceeeeee-ccCCCceeEEEecC
Q psy1859          92 VNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS-D-GYVNIWDGFNKKRLCQF-HRYDTGITSLCFSY  161 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d-~~i~iwd~~~~~~~~~~-~~~~~~v~~v~~~p  161 (162)
                      |.+.++........+.........+ ++|.+.+|+.+.. . +.|...++.... ...+ ...-.....|+|+|
T Consensus       477 I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~  549 (699)
T 1n7d_A          477 VSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDL  549 (699)
T ss_dssp             EEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECT
T ss_pred             EEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEec
Confidence            9999987543322222222345667 8886665555543 2 677777764322 2222 11122345666665

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.69  E-value=0.074  Score=36.27  Aligned_cols=107  Identities=10%  Similarity=0.061  Sum_probs=53.5

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC----CCEEEEecC--
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE----YNTFATGGS--   88 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~l~~~~~--   88 (162)
                      +...|++.|+++.++++...|.|.+  ++......+.+..+.....     ........|+++|+    +.++++-+.  
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~--~~~~g~~~~~~~~~~~v~~-----~g~~g~~gia~~pdf~~~g~lYv~~~~~~   91 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRH--WQAGKGLSAPLSGVPDVWA-----HGQGGLLDVVLAPDFAQSRRIWLSYSEVG   91 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEE--EETTTEECCCCBSCCCCCC-----STTCSEEEEEECTTHHHHCEEEEEEEEEC
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEE--EeCCCceeeEecCCccccc-----CCCCCceeEEECCCCCCCCEEEEEEeCCC
Confidence            4578999999983444556788777  4432211111111110000     01124689999995    455554332  


Q ss_pred             -----CCeEEEEeCCCc--c--ceee-eee------cccceeEE-EcCCCCEEEEec
Q psy1859          89 -----DGYVNIWDGFNK--K--RLCQ-FHR------YDTGITSL-FHQEYNTFATGG  128 (162)
Q Consensus        89 -----d~~v~~wd~~~~--~--~~~~-~~~------~~~~v~~~-~~~~~~~l~~~~  128 (162)
                           ...|..+++...  +  ..+. +..      .......+ |.|||.+.++.+
T Consensus        92 ~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  148 (353)
T 2g8s_A           92 DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG  148 (353)
T ss_dssp             SSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred             CCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence                 235666665432  1  1111 111      11123467 999997666643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.60  E-value=0.076  Score=35.20  Aligned_cols=72  Identities=13%  Similarity=0.010  Sum_probs=50.5

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCC--CeEEEEeCCCcee
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSD--GYVNIWDGFNKKR  143 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d--~~i~iwd~~~~~~  143 (162)
                      ....++|+++++++++-..++.|..||.... ....+. .......+ ++++|+++++....  ..|..+|..+++.
T Consensus        33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  107 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence            4778999999998888778899999998653 332222 23457778 99999966655432  2476777777654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.52  E-value=0.091  Score=35.14  Aligned_cols=92  Identities=13%  Similarity=-0.026  Sum_probs=53.4

Q ss_pred             ceEEEEecCCC-CEEEEecCCCeEEEEeCCC---ccceee-eeecccceeEE-EcCCCCEE-EEecCCCeEEEEeCCCce
Q psy1859          70 PVNAISFHQEY-NTFATGGSDGYVNIWDGFN---KKRLCQ-FHRYDTGITSL-FHQEYNTF-ATGGSDGYVNIWDGFNKK  142 (162)
Q Consensus        70 ~v~~~~~~p~~-~~l~~~~~d~~v~~wd~~~---~~~~~~-~~~~~~~v~~~-~~~~~~~l-~~~~~d~~i~iwd~~~~~  142 (162)
                      .+.+++|++.+ .++.+-..++.|..+++..   +..... +...-.....+ +++.+..| ++-...+.|.+.++....
T Consensus        31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~  110 (316)
T 1ijq_A           31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  110 (316)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS
T ss_pred             ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc
Confidence            47899999865 5666666789999999875   122222 22222345677 87655544 454567899999986443


Q ss_pred             eeeeeccCCCceeEEEecC
Q psy1859         143 RLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus       143 ~~~~~~~~~~~v~~v~~~p  161 (162)
                      ....+...-.....+++.|
T Consensus       111 ~~~~~~~~~~~P~~iavdp  129 (316)
T 1ijq_A          111 RKTLFRENGSKPRAIVVDP  129 (316)
T ss_dssp             EEEEEECTTCCEEEEEEET
T ss_pred             eEEEEECCCCCcceEEeCC
Confidence            2222222223556677665

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.39  E-value=0.21  Score=37.82  Aligned_cols=117  Identities=10%  Similarity=-0.031  Sum_probs=68.5

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      ..+.++...++++.|.+|+.++-+.+  ++..++....... ....      .....|.++...+++.+.+... + -+.
T Consensus       406 ~~v~~i~~d~~g~~lWigt~~~Gl~~--~d~~~~~~~~~~~-~~~~------l~~~~v~~i~~d~~g~lwigt~-~-Gl~  474 (795)
T 4a2l_A          406 NNIKAVYVDEKKSLVYIGTHAGGLSI--LHRNSGQVENFNQ-RNSQ------LVNENVYAILPDGEGNLWLGTL-S-ALV  474 (795)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEE--EETTTCCEEEECT-TTSC------CSCSCEEEEEECSSSCEEEEES-S-CEE
T ss_pred             ccEEEEEEcCCCCEEEEEeCcCceeE--EeCCCCcEEEeec-CCCC------cCCCeeEEEEECCCCCEEEEec-C-cee
Confidence            45778888777874566666666666  5544311111110 0000      0122588999888887666554 4 588


Q ss_pred             EEeCCCccceeeee------ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCcee
Q psy1859          94 IWDGFNKKRLCQFH------RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKR  143 (162)
Q Consensus        94 ~wd~~~~~~~~~~~------~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~  143 (162)
                      +||..+++......      .....+.++ ..++|.+.+...  +-|..||..+++.
T Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~  529 (795)
T 4a2l_A          475 RFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI  529 (795)
T ss_dssp             EEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE
T ss_pred             EEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE
Confidence            89987654322111      123567788 888887666554  4588888876654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.39  E-value=0.21  Score=37.80  Aligned_cols=139  Identities=11%  Similarity=0.024  Sum_probs=77.3

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      ..+.++...++++. -.|+.++-+..  ++..+...............  . -....|.++...+++++|..|+.++-|.
T Consensus       357 ~~V~~i~~d~~g~l-WiGt~~~Gl~~--~~~~~~~~~~~~~~~~~~~~--~-l~~~~v~~i~~d~~g~~lWigt~~~Gl~  430 (795)
T 4a2l_A          357 NVVSCIVEDKDKNL-WIGTNDGGLNL--YNPITQRFTSYTLQEDESAR--G-IGSNNIKAVYVDEKKSLVYIGTHAGGLS  430 (795)
T ss_dssp             SSEEEEEECTTSCE-EEEESSSCEEE--ECTTTCCEEEECCC--------C-CSCSCEEEEEEETTTTEEEEEETTTEEE
T ss_pred             CeeEEEEECCCCCE-EEEECCCCeEE--EcCCCCcEEEEecCCCCccc--C-CCCccEEEEEEcCCCCEEEEEeCcCcee
Confidence            34777877777764 45666666666  55443111111100000000  0 0112588999888888566677777799


Q ss_pred             EEeCCCccceeeee-----ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeecc------CCCceeEEEecC
Q psy1859          94 IWDGFNKKRLCQFH-----RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR------YDTGITSLCFSY  161 (162)
Q Consensus        94 ~wd~~~~~~~~~~~-----~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~v~~v~~~p  161 (162)
                      .+|..+++.. .+.     .....+.++ ..++|.+.+...  +-|..||..+++.......      ....|.++...+
T Consensus       431 ~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~  507 (795)
T 4a2l_A          431 ILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS  507 (795)
T ss_dssp             EEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT
T ss_pred             EEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEEECC
Confidence            9998876432 221     123467788 778887655554  4588899877654322111      124566665543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.38  E-value=0.15  Score=36.13  Aligned_cols=109  Identities=11%  Similarity=0.109  Sum_probs=55.7

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC----CCEEEEecC--
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE----YNTFATGGS--   88 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~l~~~~~--   88 (162)
                      +...|++.|+|+.+++-...+.|.+  ++...+....+..+...-.   ...-......|+|+|+    +.+.++-+.  
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~--~~~~~g~~~~~~~~~~~~~---~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~  102 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILR--VNPESGSVKTVFQVPEIVN---DADGQNGLLGFAFHPDFKNNPYIYISGTFKN  102 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEE--ECTTTCCEEEEEECTTCCC---CTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEE--EECCCCcEeEEecCCcccc---ccCCCCceeEEEECCCcCcCCEEEEEEeccc
Confidence            4568999999987776544455666  5543221222222111000   0001225789999995    444444432  


Q ss_pred             ----------CCeEEEEeCCCc-------ccee-eeee-cccceeEE-EcCCCCEEEEec
Q psy1859          89 ----------DGYVNIWDGFNK-------KRLC-QFHR-YDTGITSL-FHQEYNTFATGG  128 (162)
Q Consensus        89 ----------d~~v~~wd~~~~-------~~~~-~~~~-~~~~v~~~-~~~~~~~l~~~~  128 (162)
                                ...|.-++....       +.+. .+.. .......+ |.|||.+.++.+
T Consensus       103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                      235555654321       1111 1211 12335677 999999777654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.34  E-value=0.17  Score=36.32  Aligned_cols=114  Identities=12%  Similarity=-0.004  Sum_probs=66.5

Q ss_pred             cEEEEEE-------eeCCCeEEEEcCCC-----cEEEEEecCCc-cccee---eeeeeeeeeccCcccceeceEEEEecC
Q psy1859          15 QTRCIKC-------FPNKQGYVLSSIEG-----RAAVEYLDTGP-EMQKM---KYAFKCHRIKEDGIEKIYPVNAISFHQ   78 (162)
Q Consensus        15 ~~~~i~~-------~~~~~~l~~~~~~g-----~i~i~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p   78 (162)
                      ....|+|       +++++.++++...+     ...++.++... +....   ...+....          ....++.+|
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~----------~p~giavdp  256 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK----------QCNGATIHP  256 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES----------CCCCEEECT
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC----------CceEEEEcC
Confidence            3577999       99998666665543     23344454221 01110   01111111          356788899


Q ss_pred             C-CCEEEEecCCCeEEEEeCC-------Cccc-----------eeee-ee-cccceeEE-EcCCCCEEEEe-cCCCeEEE
Q psy1859          79 E-YNTFATGGSDGYVNIWDGF-------NKKR-----------LCQF-HR-YDTGITSL-FHQEYNTFATG-GSDGYVNI  135 (162)
Q Consensus        79 ~-~~~l~~~~~d~~v~~wd~~-------~~~~-----------~~~~-~~-~~~~v~~~-~~~~~~~l~~~-~~d~~i~i  135 (162)
                      + +.++++-..++.|..+|+.       ++..           ...+ .. .......+ |+|+|++|+.+ .....|+.
T Consensus       257 ~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~k  336 (496)
T 3kya_A          257 INGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMR  336 (496)
T ss_dssp             TTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence            5 5777777788999999987       4432           1121 11 12345678 99999965554 46678888


Q ss_pred             EeC
Q psy1859         136 WDG  138 (162)
Q Consensus       136 wd~  138 (162)
                      ++.
T Consensus       337 id~  339 (496)
T 3kya_A          337 SDY  339 (496)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.28  E-value=0.034  Score=41.18  Aligned_cols=73  Identities=14%  Similarity=0.089  Sum_probs=44.9

Q ss_pred             EEEEeeCCCeEEEEcCC-CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec-CC-----C
Q psy1859          18 CIKCFPNKQGYVLSSIE-GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-SD-----G   90 (162)
Q Consensus        18 ~i~~~~~~~~l~~~~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d-----~   90 (162)
                      ++++..+++.++.|+.+ ..+.+  ||..+........+...+          .-.+++..+++++++.|+ .+     .
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~--yd~~t~~W~~~~~~~~~R----------~~~s~~~~~dg~iyv~GG~~~~~~~~~  314 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSL--YDSSSDSWIPGPDMQVAR----------GYQSSATMSDGRVFTIGGSWSGGVFEK  314 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEE--EEGGGTEEEECCCCSSCC----------SSCEEEECTTSCEEEECCCCCSSSCCC
T ss_pred             cccCCCCCCEEEeCCCCCCceEE--ecCcCCceeECCCCCccc----------cccceEEecCCeEEEEeCcccCCcccc
Confidence            45667889999998754 45655  565443243332222211          123455567889999988 34     5


Q ss_pred             eEEEEeCCCccc
Q psy1859          91 YVNIWDGFNKKR  102 (162)
Q Consensus        91 ~v~~wd~~~~~~  102 (162)
                      .+.+||..+.+.
T Consensus       315 ~~e~yd~~t~~W  326 (656)
T 1k3i_A          315 NGEVYSPSSKTW  326 (656)
T ss_dssp             CEEEEETTTTEE
T ss_pred             cceEeCCCCCcc
Confidence            689999987543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.24  E-value=0.27  Score=37.51  Aligned_cols=119  Identities=8%  Similarity=-0.136  Sum_probs=63.8

Q ss_pred             cEEEEEEeeCCCeEEEEcCC--CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCe
Q psy1859          15 QTRCIKCFPNKQGYVLSSIE--GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGY   91 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~--g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~   91 (162)
                      ....|++.|.+.+|+.+...  +.|..  .+........+..   ...        .....|++++.+ +++++-.....
T Consensus       515 ~P~gIaVDp~~g~LYwtD~g~~~~I~~--~~~dG~~~~~lv~---~~l--------~~P~GLavD~~~~~LYwaD~~~~~  581 (791)
T 3m0c_C          515 KPRAIVVDPVHGFMYWTDWGTPAKIKK--GGLNGVDIYSLVT---ENI--------QWPNGITLDLLSGRLYWVDSKLHS  581 (791)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEE--EETTSCCEEEEEC---SSC--------SCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CcceEEEecCCCCEEEecCCCCCeEEE--EecCCCceEEEEe---CCC--------CCceEEEEecCCCeEEEEeCCCCc
Confidence            35678888875555555432  44555  4433211222211   111        147789999766 45555556788


Q ss_pred             EEEEeCCCccceeeeeec--ccceeEEEcCCCCEEEEe-cCCCeEEEEeCCCceeeeee
Q psy1859          92 VNIWDGFNKKRLCQFHRY--DTGITSLFHQEYNTFATG-GSDGYVNIWDGFNKKRLCQF  147 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~  147 (162)
                      |...++........+...  -.....+ ...+.+|+.+ ...+.|...|..+++.+.++
T Consensus       582 I~~~d~dG~~~~~v~~~~~~l~~P~gl-av~~~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          582 ISSIDVNGGNRKTILEDEKRLAHPFSL-AVFEDKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEEETTSCSCEEEEECTTTTSSEEEE-EEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEEecCCCceEEEecCCCccCCCCEE-EEeCCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            999998654333333221  1223344 2223344444 46678888887777654444

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.20  E-value=0.17  Score=35.08  Aligned_cols=128  Identities=10%  Similarity=-0.084  Sum_probs=68.3

Q ss_pred             EEEEEEeeCCCeEEEEcC--CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCE-EEEecCCCeE
Q psy1859          16 TRCIKCFPNKQGYVLSSI--EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT-FATGGSDGYV   92 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~--~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~~~~~d~~v   92 (162)
                      ...|++.|.+.+|+.+..  .+.|...+.+...  ...... ...          .....|++++++.. +++-...+.|
T Consensus       204 P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~--~~~~~~-~~l----------~~P~glavd~~~~~lY~aD~~~~~I  270 (400)
T 3p5b_L          204 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVT-ENI----------QWPNGITLDLLSGRLYWVDSKLHSI  270 (400)
T ss_dssp             EEEEEEETTTTEEEEEECSSSCCEEEEETTSCS--CEEEEC-SSC----------SCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             cceEEEecccCeEEEEeCCCCCEEEEEeCCCCc--cEEEEE-CCC----------CceEEEEEEeCCCEEEEEECCCCEE
Confidence            467888886655555443  2455553333221  222111 110          14678999987654 4555667899


Q ss_pred             EEEeCCCccceeeeee--cccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEE
Q psy1859          93 NIWDGFNKKRLCQFHR--YDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL  157 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~~--~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v  157 (162)
                      ..+|+...........  .-.....+ +. .+.++++-...+.|..+|..+++.+..+........+|
T Consensus       271 ~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i  337 (400)
T 3p5b_L          271 SSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDM  337 (400)
T ss_dssp             EEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEE
T ss_pred             EEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceE
Confidence            9999865433222221  12233445 42 33445555566789989977776555554333334444

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.18  E-value=0.075  Score=39.08  Aligned_cols=74  Identities=12%  Similarity=0.183  Sum_probs=48.8

Q ss_pred             EEecCCCCE----EEEecCCCeEEEEeCCCccceeeeeeccc----ceeEE-EcCCCCEEEEec------CCCeEEEEeC
Q psy1859          74 ISFHQEYNT----FATGGSDGYVNIWDGFNKKRLCQFHRYDT----GITSL-FHQEYNTFATGG------SDGYVNIWDG  138 (162)
Q Consensus        74 ~~~~p~~~~----l~~~~~d~~v~~wd~~~~~~~~~~~~~~~----~v~~~-~~~~~~~l~~~~------~d~~i~iwd~  138 (162)
                      ++++|.+..    ++.++.|+.|..+|..+|+.+.+......    .+... .-.++ .+++++      .++.|+.+|.
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g-~V~vg~~g~e~g~~g~v~A~D~  189 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYDV  189 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEET
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECC-EEEEEecccccCCCCeEEEEEC
Confidence            445443333    77888899999999999988766543221    22221 11134 555554      3799999999


Q ss_pred             CCceeeeeec
Q psy1859         139 FNKKRLCQFH  148 (162)
Q Consensus       139 ~~~~~~~~~~  148 (162)
                      ++|+.+.++.
T Consensus       190 ~TG~~~W~~~  199 (599)
T 1w6s_A          190 KTGEQVWRAY  199 (599)
T ss_dssp             TTCCEEEEEE
T ss_pred             CCCcEEEEEc
Confidence            9999887765

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.15  E-value=0.017  Score=36.89  Aligned_cols=65  Identities=6%  Similarity=-0.084  Sum_probs=42.4

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCccc------eeeeee-cccceeEE-EcCCCCEEEEecCCCeEEEEeC
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR------LCQFHR-YDTGITSL-FHQEYNTFATGGSDGYVNIWDG  138 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~------~~~~~~-~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~  138 (162)
                      .+..++|+|++.+.++  .+|.++-.+..+...      -..+-. .-.....+ |.|+|.+.++  .||.|.-++-
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            5779999999887777  778777777654211      111110 11124677 9999987777  5588876765

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.06  E-value=0.021  Score=41.59  Aligned_cols=48  Identities=19%  Similarity=0.277  Sum_probs=32.7

Q ss_pred             CCCEEEEecCCCeEEEEeCCCccceeeeeecccce-eEE-EcCCCCEEEE
Q psy1859          79 EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGI-TSL-FHQEYNTFAT  126 (162)
Q Consensus        79 ~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v-~~~-~~~~~~~l~~  126 (162)
                      .+.+++.++.|+.|+.+|.++++.+.++....... .-+ +..+|+.++.
T Consensus       474 ~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence            35667778999999999999999988876433221 122 5567764443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.04  E-value=0.2  Score=34.28  Aligned_cols=121  Identities=13%  Similarity=0.122  Sum_probs=73.8

Q ss_pred             EEEEE--eeC-CC-eEEEEcCCCcEEEEEecCC-c--ccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          17 RCIKC--FPN-KQ-GYVLSSIEGRAAVEYLDTG-P--EMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        17 ~~i~~--~~~-~~-~l~~~~~~g~i~i~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      .-+++  +|. ++ ++++...+|.+..|.+... .  ...+.+..+....          .+..+...+....|..+-.+
T Consensus       131 yGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs----------q~EgcvvDd~~g~Lyv~eEd  200 (355)
T 3amr_A          131 YGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS----------QTEGMAADDEYGRLYIAEED  200 (355)
T ss_dssp             CCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS----------CEEEEEEETTTTEEEEEETT
T ss_pred             eEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC----------CcceEEEcCCCCeEEEeccc
Confidence            34565  564 44 5666777888887666432 1  1123334433322          58899999988888888888


Q ss_pred             CeEEEEeCCC-----ccceeeee--ecccceeEE-E--cCCCC-EEEEec-CCCeEEEEeCC-Cceeeeee
Q psy1859          90 GYVNIWDGFN-----KKRLCQFH--RYDTGITSL-F--HQEYN-TFATGG-SDGYVNIWDGF-NKKRLCQF  147 (162)
Q Consensus        90 ~~v~~wd~~~-----~~~~~~~~--~~~~~v~~~-~--~~~~~-~l~~~~-~d~~i~iwd~~-~~~~~~~~  147 (162)
                      .-|+.++.+.     ++.+..+.  .....+..+ +  .++++ +|++++ .++++.+||.. +.+.+..+
T Consensus       201 ~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          201 EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence            7788888552     23343332  112356666 3  56666 666666 67799999996 55555555

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.91  E-value=0.23  Score=33.90  Aligned_cols=103  Identities=15%  Similarity=0.076  Sum_probs=55.8

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC----CCEEEEecC--
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE----YNTFATGGS--   88 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~l~~~~~--   88 (162)
                      ....++|.|+++.+++ ..+|.|.+  ++... . +.+..+.....      -......|+++|+    +.++++-+.  
T Consensus        30 ~P~~ia~~pdG~l~V~-e~~g~I~~--~d~~G-~-~~~~~~~v~~~------g~~g~~gia~~pdf~~~g~lyv~~~~~~   98 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVT-ERPGRLVL--ISPSG-K-KLVASFDVANV------GEAGLLGLALHPEFPKKSWVYLYASYFA   98 (354)
T ss_dssp             CEEEEEEEETTEEEEE-ETTTEEEE--ECSSC-E-EEEEECCCCCS------TTCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred             CCeEEEEcCCCeEEEE-eCCCEEEE--EeCCC-c-eEeeccceeec------CCCceeeEEeCCCCCcCCEEEEEEeccC
Confidence            3468999999985555 55588877  45322 1 22221110000      0125789999997    445444432  


Q ss_pred             -C----CeEEEEeCCCc--c-----ce-eeeee-cccceeEE-EcCCCCEEEEec
Q psy1859          89 -D----GYVNIWDGFNK--K-----RL-CQFHR-YDTGITSL-FHQEYNTFATGG  128 (162)
Q Consensus        89 -d----~~v~~wd~~~~--~-----~~-~~~~~-~~~~v~~~-~~~~~~~l~~~~  128 (162)
                       +    ..|..|+....  .     .+ ..+.. .......+ |.|||.++++.+
T Consensus        99 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A           99 EGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             GGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             CCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence             3    56777776543  1     11 11221 11123567 999998777653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.80  E-value=0.38  Score=35.55  Aligned_cols=134  Identities=6%  Similarity=-0.084  Sum_probs=71.4

Q ss_pred             EEEEEEeeCCCeEEEEcC-CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCeEE
Q psy1859          16 TRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVN   93 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v~   93 (162)
                      ...+++++.+..++.+.. .+.|..++.+.... .+.+.. .+.          .....+++.+.+ +++++-...+.|.
T Consensus        42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~-~~~v~~-~~~----------~~P~GlAvD~~~~~ly~~d~~~~~I~  109 (619)
T 3s94_A           42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-VQNVVV-SGL----------LSPDGLACDWLGEKLYWTDSETNRIE  109 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC------CEEEEC-SSC----------SCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc-eEEEEe-CCC----------CCcCeEEEEecCCEEEEEeCCCCEEE
Confidence            457888886666655543 45555544332210 011111 110          147789999855 5666667789999


Q ss_pred             EEeCCCccceeeeeecccceeEE-EcCCCCEEEEecC--CCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          94 IWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS--DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      +.++........+...-.....+ ++|.+.+|+.+..  .+.|...++............-.....|+++|
T Consensus       110 v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~  180 (619)
T 3s94_A          110 VSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDY  180 (619)
T ss_dssp             EEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEET
T ss_pred             EEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEc
Confidence            99987543222222233446677 8887666655543  46777777643222111211223456666664

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.72  E-value=0.41  Score=35.37  Aligned_cols=76  Identities=8%  Similarity=0.002  Sum_probs=43.3

Q ss_pred             ceEEEEecCCC-CEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEe-cCCCeEEEEeCCCceeeee
Q psy1859          70 PVNAISFHQEY-NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATG-GSDGYVNIWDGFNKKRLCQ  146 (162)
Q Consensus        70 ~v~~~~~~p~~-~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~  146 (162)
                      ....+++++++ +++++-...+.|...|+..................+ +..+  .++.+ ...+.|...|..+++....
T Consensus       172 ~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~  249 (619)
T 3s94_A          172 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLRE  249 (619)
T ss_dssp             SEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred             CCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEE
Confidence            46789999875 555555677889999987543322222112222344 4433  44444 4667899999877764444


Q ss_pred             e
Q psy1859         147 F  147 (162)
Q Consensus       147 ~  147 (162)
                      +
T Consensus       250 i  250 (619)
T 3s94_A          250 I  250 (619)
T ss_dssp             C
T ss_pred             E
Confidence            3

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.69  E-value=0.28  Score=33.36  Aligned_cols=68  Identities=12%  Similarity=0.176  Sum_probs=43.4

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCcc--ceeeee---ecccceeEE-EcCC---CCEEEEecC-C-----CeEE
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKK--RLCQFH---RYDTGITSL-FHQE---YNTFATGGS-D-----GYVN  134 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~--~~~~~~---~~~~~v~~~-~~~~---~~~l~~~~~-d-----~~i~  134 (162)
                      ....++|.|+|+++++. .++.|.+++  +++  .+..+.   ........+ ++|+   +..|+++.. .     +.|.
T Consensus        32 ~P~~ia~~pdG~l~V~e-~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAE-RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEEE-TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEEe-CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            36789999999866665 559999998  333  222221   123456778 9998   555555443 2     5777


Q ss_pred             EEeCCC
Q psy1859         135 IWDGFN  140 (162)
Q Consensus       135 iwd~~~  140 (162)
                      .++...
T Consensus       109 r~~~~~  114 (352)
T 2ism_A          109 RLRHLG  114 (352)
T ss_dssp             EEEECS
T ss_pred             EEEeCC
Confidence            787764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.69  E-value=0.47  Score=35.85  Aligned_cols=133  Identities=11%  Similarity=0.006  Sum_probs=72.7

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      ..+.++...+++.. -.|+.++-+..  ++..+...... . ....      .....|.++...+++.+.+ |+.++-+.
T Consensus       363 ~~v~~i~~d~~g~l-Wigt~~~Gl~~--~~~~~~~~~~~-~-~~~~------~~~~~v~~i~~d~~g~lWi-gt~~~Gl~  430 (781)
T 3v9f_A          363 KVVSSVCDDGQGKL-WIGTDGGGINV--FENGKRVAIYN-K-ENRE------LLSNSVLCSLKDSEGNLWF-GTYLGNIS  430 (781)
T ss_dssp             SCEEEEEECTTSCE-EEEEBSSCEEE--EETTEEEEECC-------------CCCSBEEEEEECTTSCEEE-EETTEEEE
T ss_pred             cceEEEEEcCCCCE-EEEeCCCcEEE--EECCCCeEEEc-c-CCCC------CCCcceEEEEECCCCCEEE-EeccCCEE
Confidence            45677777776664 45565555565  55443111111 0 0000      0112588998888777655 56666788


Q ss_pred             EEeCCCccceeeee---ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccC-----CCceeEEEecC
Q psy1859          94 IWDGFNKKRLCQFH---RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY-----DTGITSLCFSY  161 (162)
Q Consensus        94 ~wd~~~~~~~~~~~---~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~v~~v~~~p  161 (162)
                      .+|..+++.. .+.   .....+.++ ..+++.+.+. +. +-|..+|..+++........     ...|.++...+
T Consensus       431 ~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~  504 (781)
T 3v9f_A          431 YYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS  504 (781)
T ss_dssp             EECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT
T ss_pred             EEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC
Confidence            8998765432 221   123567777 7777765444 44 56888998766533222111     24566665543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=95.59  E-value=0.034  Score=40.64  Aligned_cols=48  Identities=23%  Similarity=0.347  Sum_probs=34.0

Q ss_pred             CCEEEEecCCCeEEEEeCCCccceeeeeeccccee-EE-EcCCCC-EEEEe
Q psy1859          80 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGIT-SL-FHQEYN-TFATG  127 (162)
Q Consensus        80 ~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~-~~-~~~~~~-~l~~~  127 (162)
                      +.+++.++.|+.++.||.++++.+.+++....... -+ +..+|+ |+++.
T Consensus       497 gglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~  547 (582)
T 1flg_A          497 GNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence            56777799999999999999999888765433222 23 667776 44433

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.47  E-value=0.52  Score=34.91  Aligned_cols=92  Identities=7%  Similarity=-0.159  Sum_probs=55.5

Q ss_pred             ceEEEEecCCC-CEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEE-EEecCCCeEEEEeCCCceeeee
Q psy1859          70 PVNAISFHQEY-NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTF-ATGGSDGYVNIWDGFNKKRLCQ  146 (162)
Q Consensus        70 ~v~~~~~~p~~-~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~  146 (162)
                      .+.+++|++.+ .++.+-..++.|..+++........+.........+ +++.+..| ++-...+.|.+.++........
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l  117 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL  117 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEE
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEE
Confidence            47899999865 555566678999999987543332332222345567 77655545 4444667899999864432111


Q ss_pred             eccCCCceeEEEecC
Q psy1859         147 FHRYDTGITSLCFSY  161 (162)
Q Consensus       147 ~~~~~~~v~~v~~~p  161 (162)
                      +...-....+|++.|
T Consensus       118 ~~~~l~~P~~iavdp  132 (628)
T 4a0p_A          118 VWKDLDSPRALALDP  132 (628)
T ss_dssp             ECSSCCCEEEEEEET
T ss_pred             EeCCCCCcccEEEcc
Confidence            212223456777765

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.44  E-value=0.28  Score=35.89  Aligned_cols=102  Identities=9%  Similarity=-0.023  Sum_probs=62.4

Q ss_pred             EEEEEeeCCCeEEEE-cCCCcEEEEEecCCcc-------cce--eeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe
Q psy1859          17 RCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPE-------MQK--MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG   86 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~-~~~g~i~i~~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~   86 (162)
                      ..+..+|||++++++ -.+.++.+++++.-..       ..+  ......  .    +    -.....+|.++|+...+.
T Consensus       326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~----G----lGPlHt~Fd~~G~aYTtl  395 (638)
T 3sbq_A          326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--L----G----LGPLHTTFDGRGNAYTTL  395 (638)
T ss_dssp             CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--C----C----SCEEEEEECSSSEEEEEE
T ss_pred             cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--C----C----CcccEEEECCCCceEeee
Confidence            347899999998776 4467899977652110       000  011111  0    1    146788999999777777


Q ss_pred             cCCCeEEEEeCCCc----------cceeeeeecccceeEE------EcCCCCEEEEec
Q psy1859          87 GSDGYVNIWDGFNK----------KRLCQFHRYDTGITSL------FHQEYNTFATGG  128 (162)
Q Consensus        87 ~~d~~v~~wd~~~~----------~~~~~~~~~~~~v~~~------~~~~~~~l~~~~  128 (162)
                      .-|.+|..|++...          ..+.++..|-++-...      -.|+|++|++..
T Consensus       396 fidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          396 FIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             TTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             eecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            89999999999753          2233443332222211      357899998885

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.41  E-value=0.56  Score=37.39  Aligned_cols=68  Identities=13%  Similarity=0.201  Sum_probs=41.6

Q ss_pred             eEEEEecCC-CCEEEEec----------CCCeEEEEeCCCccceeee-eecccceeEE--EcCCCCEEEEecCCCeEEEE
Q psy1859          71 VNAISFHQE-YNTFATGG----------SDGYVNIWDGFNKKRLCQF-HRYDTGITSL--FHQEYNTFATGGSDGYVNIW  136 (162)
Q Consensus        71 v~~~~~~p~-~~~l~~~~----------~d~~v~~wd~~~~~~~~~~-~~~~~~v~~~--~~~~~~~l~~~~~d~~i~iw  136 (162)
                      +..+.|..+ ..+++.|+          ..|.|.+|++.+++..... ...+++++++  |  +|++++..  ..+|++|
T Consensus       834 v~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla~i--g~~l~vy  909 (1158)
T 3ei3_A          834 LVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLASI--NSTVRLY  909 (1158)
T ss_dssp             EEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEEEE--TTEEEEE
T ss_pred             EEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEEEc--CCEEEEE
Confidence            444445443 36787775          3588999998754322211 1346778888  6  35444433  4689999


Q ss_pred             eCCCce
Q psy1859         137 DGFNKK  142 (162)
Q Consensus       137 d~~~~~  142 (162)
                      ++...+
T Consensus       910 ~l~~~~  915 (1158)
T 3ei3_A          910 EWTTEK  915 (1158)
T ss_dssp             EECTTS
T ss_pred             ECCCCc
Confidence            997654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.39  E-value=0.27  Score=32.32  Aligned_cols=107  Identities=14%  Similarity=0.135  Sum_probs=56.0

Q ss_pred             CCCeEEEEcCCCc---EEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC-----CeEEEE
Q psy1859          24 NKQGYVLSSIEGR---AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD-----GYVNIW   95 (162)
Q Consensus        24 ~~~~l~~~~~~g~---i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-----~~v~~w   95 (162)
                      +++.++.|+.++.   -.+|.+|..+.....+..+...+.         ....+.+  ++++++.|+.+     ..+.+|
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~---------~~~~~~~--~~~i~v~GG~~~~~~~~~v~~y  227 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRS---------GAGVALL--NDHIYVVGGFDGTAHLSSVEAY  227 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCB---------SCEEEEE--TTEEEEECCBCSSSBCCCEEEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccc---------cceEEEE--CCEEEEEeCCCCCcccceEEEE
Confidence            5667777765432   224446665533443322221111         1122222  46777777764     468899


Q ss_pred             eCCCcccee--eeeecccceeEEEcCCCCEEEEecCC-----CeEEEEeCCCce
Q psy1859          96 DGFNKKRLC--QFHRYDTGITSLFHQEYNTFATGGSD-----GYVNIWDGFNKK  142 (162)
Q Consensus        96 d~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~  142 (162)
                      |+.+.+...  .+.........+ .-++++++.|+.+     ..+.+||+++.+
T Consensus       228 d~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          228 NIRTDSWTTVTSMTTPRCYVGAT-VLRGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             ETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             eCCCCcEEECCCCCCcccceeEE-EECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            998764332  222111112222 2267777887755     467899998765

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.30  E-value=0.67  Score=35.04  Aligned_cols=131  Identities=12%  Similarity=0.069  Sum_probs=70.5

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      ..+.++...+++...+ |+.++-+..  ++..+...+... ....        ....|.++...+++.+.+.. . +-+.
T Consensus       407 ~~v~~i~~d~~g~lWi-gt~~~Gl~~--~~~~~~~~~~~~-~~~~--------~~~~v~~i~~d~~g~lwigt-~-~Gl~  472 (781)
T 3v9f_A          407 NSVLCSLKDSEGNLWF-GTYLGNISY--YNTRLKKFQIIE-LEKN--------ELLDVRVFYEDKNKKIWIGT-H-AGVF  472 (781)
T ss_dssp             SBEEEEEECTTSCEEE-EETTEEEEE--ECSSSCEEEECC-STTT--------CCCCEEEEEECTTSEEEEEE-T-TEEE
T ss_pred             cceEEEEECCCCCEEE-EeccCCEEE--EcCCCCcEEEec-cCCC--------CCCeEEEEEECCCCCEEEEE-C-CceE
Confidence            4566777666666444 555454555  555431111111 0000        11258899888877655544 4 5688


Q ss_pred             EEeCCCccceeeeeec-----ccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeecc----CCCceeEEEec
Q psy1859          94 IWDGFNKKRLCQFHRY-----DTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR----YDTGITSLCFS  160 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~-----~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~v~~~  160 (162)
                      .+|..+++........     ...+.++ ..++|.+.+.....| |..+|..+++... +..    ....|.++...
T Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d  547 (781)
T 3v9f_A          473 VIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK-FNQYEGFCSNTINQIYRS  547 (781)
T ss_dssp             EEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE-ECTTTTCSCSCEEEEEEC
T ss_pred             EEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE-ccCCCCCCCCeeEEEEEC
Confidence            8998765433221111     3567788 888887655543344 7778887654332 221    12346666554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.14  E-value=0.43  Score=32.01  Aligned_cols=134  Identities=13%  Similarity=0.127  Sum_probs=69.3

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .....+..+++.+++.+++++. +|.+.. ..|......+....  ..         ...+..+++.+++.+++.+ .+|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~g~-~G~~~~-S~d~gG~tW~~~~~--~~---------~~~~~~~~~~~~g~~~~~~-~~G  225 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSGEYVAVSS-RGSFYS-TWEPGQTAWEPHNR--TT---------SRRLHNMGFTPDGRLWMIV-NGG  225 (327)
T ss_dssp             SCCCCEEEEEECTTSCEEEEET-TSSEEE-EECTTCSSCEEEEC--CS---------SSCEEEEEECTTSCEEEEE-TTT
T ss_pred             CCCcceEEEEEcCCCcEEEEEC-CCcEEE-EeCCCCCceeECCC--CC---------CCccceeEECCCCCEEEEe-CCc
Confidence            3344567788888877766654 444433 12321111222211  11         1257888899988766544 578


Q ss_pred             eEEEEeCCCccceeeeee----cccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec---cCCCceeEEEec
Q psy1859          91 YVNIWDGFNKKRLCQFHR----YDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH---RYDTGITSLCFS  160 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~----~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~v~~~  160 (162)
                      .+++.+...++.-..+..    ....+..+ +.+++..++++. ++.| ++....++.-..+.   .....+.++.|.
T Consensus       226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~  301 (327)
T 2xbg_A          226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFF  301 (327)
T ss_dssp             EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEE
T ss_pred             eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEE
Confidence            777764332332222221    12346778 888877776664 5655 34444443222222   123456677664

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.12  E-value=0.3  Score=32.13  Aligned_cols=64  Identities=19%  Similarity=0.256  Sum_probs=38.0

Q ss_pred             CCCEEEEecCC-----CeEEEEeCCCcccee--eeeecccceeEEEcCCCCEEEEecCCC-----eEEEEeCCCcee
Q psy1859          79 EYNTFATGGSD-----GYVNIWDGFNKKRLC--QFHRYDTGITSLFHQEYNTFATGGSDG-----YVNIWDGFNKKR  143 (162)
Q Consensus        79 ~~~~l~~~~~d-----~~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~  143 (162)
                      ++++++.|+.+     ..+.+||+.+.+...  .+.........+ .-++++++.|+.++     .+.+||+.+.+-
T Consensus       204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence            46777787754     468899998754322  221111111122 22677778877553     589999987753

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.09  E-value=0.095  Score=35.67  Aligned_cols=111  Identities=13%  Similarity=0.183  Sum_probs=61.9

Q ss_pred             CeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEe--cC-CCCEEEEe-cCCCeEEEEeCCCcc
Q psy1859          26 QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF--HQ-EYNTFATG-GSDGYVNIWDGFNKK  101 (162)
Q Consensus        26 ~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p-~~~~l~~~-~~d~~v~~wd~~~~~  101 (162)
                      ..+++++.||.+.-  +|..+  .+..+.++.....        ++....-  .+ ++..++.. +.||.|..++..+|.
T Consensus        11 ~~V~v~t~dG~l~A--ld~~t--G~~~W~~~~~~~~--------p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~   78 (339)
T 2be1_A           11 DILIAADVEGGLHA--VDRRN--GHIIWSIEPENFQ--------PLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL   78 (339)
T ss_dssp             EEEEEEETTSCEEE--EETTT--TEEEEEECGGGSC--------CSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE
T ss_pred             CEEEEEeCCCeEEE--EECCC--CcEEEEecCCccC--------CcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc
Confidence            35667777777766  55554  4444443322000        1111100  01 22334343 689999999988875


Q ss_pred             ceeeeeec----ccceeE---E-E-c----CCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859         102 RLCQFHRY----DTGITS---L-F-H----QEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus       102 ~~~~~~~~----~~~v~~---~-~-~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      ....+...    ..++..   . . .    -.+..+++|+.++.+...|+++|+.+..+.
T Consensus        79 ~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           79 QKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             EEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             EEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            44333211    111110   0 1 0    145678999999999999999999988875

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.00  E-value=0.31  Score=32.12  Aligned_cols=105  Identities=10%  Similarity=0.100  Sum_probs=54.8

Q ss_pred             CeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC----CeEEEEeCCCcc
Q psy1859          26 QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD----GYVNIWDGFNKK  101 (162)
Q Consensus        26 ~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d----~~v~~wd~~~~~  101 (162)
                      ..++.|+.+..-.+|.+|..+.....+..+...+.         .-..+.+  ++.+++.|+.+    ..+.+||..+.+
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~---------~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~   81 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRR---------DAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDS   81 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCB---------SCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTE
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccc---------eeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCe
Confidence            34566665433334557766543443332222111         1122222  46677777754    678889988764


Q ss_pred             ceee--eeecccceeEEEcCCCCEEEEecCC------CeEEEEeCCCce
Q psy1859         102 RLCQ--FHRYDTGITSLFHQEYNTFATGGSD------GYVNIWDGFNKK  142 (162)
Q Consensus       102 ~~~~--~~~~~~~v~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~  142 (162)
                      ....  +.........+ .-++++++.|+.+      ..+.+||..+.+
T Consensus        82 W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~  129 (306)
T 3ii7_A           82 WYSKLGPPTPRDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTES  129 (306)
T ss_dssp             EEEEECCSSCCBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred             EEECCCCCccccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence            3322  21111111222 2266777777754      468899988765

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.00  E-value=0.52  Score=32.20  Aligned_cols=107  Identities=13%  Similarity=-0.017  Sum_probs=57.2

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC----CCEEEEe--cC
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE----YNTFATG--GS   88 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~l~~~--~~   88 (162)
                      ....|++.|+|+.+++--..|.|.+  ++........+..+..-     ...-......|+++|+    +.+.++-  ..
T Consensus        33 ~P~~ia~~pdG~llVter~~G~I~~--v~~~~g~~~~v~~~~~v-----~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRDEATITR--VDAKTGRKTELGEVPGV-----SPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEE--ECTTTCCEEEEEECTTC-----CCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             CceEEEEcCCCcEEEEEecCCEEEE--EECCCCcEeeecccCce-----eecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            4468999999987777555788877  55432212222111100     0001125789999995    4444432  24


Q ss_pred             CCeEEEEeCCCcc--------c--e-eeeee-cccceeEE-EcCCCCEEEEec
Q psy1859          89 DGYVNIWDGFNKK--------R--L-CQFHR-YDTGITSL-FHQEYNTFATGG  128 (162)
Q Consensus        89 d~~v~~wd~~~~~--------~--~-~~~~~-~~~~v~~~-~~~~~~~l~~~~  128 (162)
                      ++.|.-|.+..+.        .  + ..+.. .......+ |.|||.+.++.+
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            5566666655411        1  1 11211 11234457 999998777754

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=94.69  E-value=0.78  Score=35.80  Aligned_cols=35  Identities=20%  Similarity=0.212  Sum_probs=29.7

Q ss_pred             eeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeee
Q psy1859         113 ITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQF  147 (162)
Q Consensus       113 v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  147 (162)
                      +.++ ..++..++++-+.|+++|+|++.+++++.+.
T Consensus       238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4455 6678889999999999999999999887765

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=94.59  E-value=0.69  Score=31.69  Aligned_cols=89  Identities=15%  Similarity=0.195  Sum_probs=58.8

Q ss_pred             ceEEEEe--cCC-CC-EEEEecCCCeEEEEeCC-------CccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEe
Q psy1859          70 PVNAISF--HQE-YN-TFATGGSDGYVNIWDGF-------NKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWD  137 (162)
Q Consensus        70 ~v~~~~~--~p~-~~-~l~~~~~d~~v~~wd~~-------~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd  137 (162)
                      .+..+++  +|. +. ++++...+|.+..|++.       +.+.++++.. .+.+..+ ..+....|+.+-++..|..++
T Consensus       129 ~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~d  207 (355)
T 3amr_A          129 EVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFS  207 (355)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred             CeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEe
Confidence            4667777  775 43 56677788999999883       2355666654 3566677 888888999999987787778


Q ss_pred             CC-----Cceeeeeec-c-CCCceeEEEe
Q psy1859         138 GF-----NKKRLCQFH-R-YDTGITSLCF  159 (162)
Q Consensus       138 ~~-----~~~~~~~~~-~-~~~~v~~v~~  159 (162)
                      .+     +++.+..+. + -...+..|+.
T Consensus       208 a~p~~~~~~~~v~~~~~g~l~aDvEGLai  236 (355)
T 3amr_A          208 AEPDGGSNGTVIDRADGRHLTRDIEGLTI  236 (355)
T ss_dssp             CSTTSCSCCEEEEEBSSSSBCSCEEEEEE
T ss_pred             CCcCCCCCceEEEEecCCccccCcceEEE
Confidence            55     344554442 1 1224555555

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=94.51  E-value=0.66  Score=31.12  Aligned_cols=131  Identities=11%  Similarity=0.104  Sum_probs=68.9

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      +....+.+.+++..++++ .+|.+.. ..|... ..+...  ....         ..+..+++.|++.+++.+...+..+
T Consensus       122 ~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~-tW~~~~--~~~~---------~~~~~~~~~~~~~~~~~g~~G~~~~  187 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGK-NWQALV--QEAI---------GVMRNLNRSPSGEYVAVSSRGSFYS  187 (327)
T ss_dssp             SCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTS-SEEEEE--CSCC---------CCEEEEEECTTSCEEEEETTSSEEE
T ss_pred             CCeEEEEEECCCCEEEEe-CCccEEE-EcCCCC-CCEEee--cCCC---------cceEEEEEcCCCcEEEEECCCcEEE
Confidence            445677777766666554 4554432 133211 122211  1111         2578899999888887776555555


Q ss_pred             EEeC--CCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeecc----CCCceeEEEecC
Q psy1859          94 IWDG--FNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR----YDTGITSLCFSY  161 (162)
Q Consensus        94 ~wd~--~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~v~~~p  161 (162)
                      -.|-  .+.+.+.  ......+..+ +.+++..++.+ .+|.+++.+...++.-..+..    ....+.++.|.|
T Consensus       188 S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~  259 (327)
T 2xbg_A          188 TWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT  259 (327)
T ss_dssp             EECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS
T ss_pred             EeCCCCCceeECC--CCCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC
Confidence            5553  2233321  1234567777 88888766544 577777764332332222211    122466777654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.25  E-value=0.69  Score=30.32  Aligned_cols=107  Identities=16%  Similarity=0.177  Sum_probs=56.0

Q ss_pred             CCCeEEEEcCCCc---EEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC-----CeEEEE
Q psy1859          24 NKQGYVLSSIEGR---AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD-----GYVNIW   95 (162)
Q Consensus        24 ~~~~l~~~~~~g~---i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-----~~v~~w   95 (162)
                      +++.++.|+.++.   -.+|.+|..+........+...+.         .-..+.+  ++++++.|+.+     ..+.+|
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~---------~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~  180 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTARE---------GAGLVVA--SGVIYCLGGYDGLNILNSVEKY  180 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCB---------SCEEEEE--TTEEEEECCBCSSCBCCCEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcc---------cceEEEE--CCEEEEECCCCCCcccceEEEE
Confidence            5677777765432   235557765533443322221111         1112222  56777777654     468889


Q ss_pred             eCCCccceee--eeecccceeEEEcCCCCEEEEecCC-----CeEEEEeCCCce
Q psy1859          96 DGFNKKRLCQ--FHRYDTGITSLFHQEYNTFATGGSD-----GYVNIWDGFNKK  142 (162)
Q Consensus        96 d~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~  142 (162)
                      |+.+.+....  +.........+ .-++++++.|+.+     ..+.+||+.+.+
T Consensus       181 d~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          181 DPHTGHWTNVTPMATKRSGAGVA-LLNDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             ETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             eCCCCcEEeCCCCCcccccceEE-EECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence            9877543322  21111111222 2256777777754     468999998765

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.10  E-value=0.54  Score=37.37  Aligned_cols=32  Identities=16%  Similarity=0.149  Sum_probs=27.8

Q ss_pred             EcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859         117 FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus       117 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      ..++..++++-+.|+++|+|++.+++++.+..
T Consensus       245 ~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          245 FLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             EETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             ccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            55678899999999999999999999887753

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.82  E-value=0.97  Score=30.47  Aligned_cols=95  Identities=19%  Similarity=0.169  Sum_probs=46.0

Q ss_pred             CCCeEEEEcCCCcEEEEEecCCc--ccceeeeeee-eeeeccCcccceeceEEEEecCCCCEEEEecC-C---------C
Q psy1859          24 NKQGYVLSSIEGRAAVEYLDTGP--EMQKMKYAFK-CHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-D---------G   90 (162)
Q Consensus        24 ~~~~l~~~~~~g~i~i~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d---------~   90 (162)
                      +++.++.|+.++. .+|.+|...  .....+..+. ..+.         ....+.+  ++.+++.|+. +         .
T Consensus        19 ~~~iyv~GG~~~~-~~~~~d~~~~~~~W~~~~~~p~~~R~---------~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~   86 (357)
T 2uvk_A           19 NDTVYIGLGSAGT-AWYKLDTQAKDKKWTALAAFPGGPRD---------QATSAFI--DGNLYVFGGIGKNSEGLTQVFN   86 (357)
T ss_dssp             TTEEEEECGGGTT-CEEEEETTSSSCCEEECCCCTTCCCB---------SCEEEEE--TTEEEEECCEEECTTSCEEECC
T ss_pred             CCEEEEEeCcCCC-eEEEEccccCCCCeeECCCCCCCcCc---------cceEEEE--CCEEEEEcCCCCCCCccceeec
Confidence            6777777765543 345566542  2233332222 1111         1112222  4677777765 2         4


Q ss_pred             eEEEEeCCCcccee--eeeecccceeEEEcCCCCEEEEecCC
Q psy1859          91 YVNIWDGFNKKRLC--QFHRYDTGITSLFHQEYNTFATGGSD  130 (162)
Q Consensus        91 ~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d  130 (162)
                      .+.+||..+.+...  .+......-..+...++++++.|+.+
T Consensus        87 ~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           87 DVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             CEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred             cEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence            68899988754332  22201111112222467777888754

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=93.82  E-value=0.87  Score=29.90  Aligned_cols=107  Identities=18%  Similarity=0.208  Sum_probs=55.7

Q ss_pred             CCCeEEEEcCCCc---EEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC-------CeEE
Q psy1859          24 NKQGYVLSSIEGR---AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD-------GYVN   93 (162)
Q Consensus        24 ~~~~l~~~~~~g~---i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-------~~v~   93 (162)
                      +++.++.|+.++.   -.+|.+|..+........+...+.         ....+.+  ++++++.|+.+       ..+.
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~---------~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~  176 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRS---------SVGVGVV--GGLLYAVGGYDVASRQCLSTVE  176 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCB---------SCEEEEE--TTEEEEECCEETTTTEECCCEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCccc---------CceEEEE--CCEEEEEeCCCCCCCccccEEE
Confidence            5667777765432   235667766543444332221111         1112222  46677777542       4588


Q ss_pred             EEeCCCcccee--eeeecccceeEEEcCCCCEEEEecCC-----CeEEEEeCCCce
Q psy1859          94 IWDGFNKKRLC--QFHRYDTGITSLFHQEYNTFATGGSD-----GYVNIWDGFNKK  142 (162)
Q Consensus        94 ~wd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~  142 (162)
                      +||+.+.+...  .+.........+ .-++++++.|+.+     ..+.+||+.+.+
T Consensus       177 ~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          177 CYNATTNEWTYIAEMSTRRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             EEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             EEeCCCCcEEECCCCccccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence            89988754332  222111112222 1256777777754     468899998765

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=93.51  E-value=1.7  Score=32.25  Aligned_cols=117  Identities=8%  Similarity=-0.072  Sum_probs=66.0

Q ss_pred             EEEEEEeeCCCeEEEEcC--CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCeE
Q psy1859          16 TRCIKCFPNKQGYVLSSI--EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYV   92 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~--~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v   92 (162)
                      ...|++.|....|+.+..  .+.|..  .+........+.  ..  .        .....+++++++ +++.+-...+.|
T Consensus       125 P~~iavdp~~G~lY~tD~g~~~~I~r--~~~dG~~~~~l~--~~--~--------~~P~GlalD~~~~~LY~aD~~~~~I  190 (628)
T 4a0p_A          125 PRALALDPAEGFMYWTEWGGKPKIDR--AAMDGSERTTLV--PN--V--------GRANGLTIDYAKRRLYWTDLDTNLI  190 (628)
T ss_dssp             EEEEEEETTTTEEEEEECSSSCEEEE--EETTSCSCEEEE--CS--C--------SSEEEEEEETTTTEEEEEETTTTEE
T ss_pred             cccEEEccCCCeEEEeCCCCCCEEEE--EeCCCCceEEEE--CC--C--------CCcceEEEccccCEEEEEECCCCEE
Confidence            467888886555555443  344444  443321122222  11  1        146789999976 455555677899


Q ss_pred             EEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859          93 NIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      ...|+..... ..+.........+ +.. +.++++-...+.|...|..+++....+.
T Consensus       191 ~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~  245 (628)
T 4a0p_A          191 ESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQ  245 (628)
T ss_dssp             EEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEe
Confidence            9999875433 3333333334455 443 3444444457889999977776444443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.49  E-value=1  Score=29.71  Aligned_cols=108  Identities=17%  Similarity=0.211  Sum_probs=56.1

Q ss_pred             CCCeEEEEcCCCc---EEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC-----CeEEEE
Q psy1859          24 NKQGYVLSSIEGR---AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD-----GYVNIW   95 (162)
Q Consensus        24 ~~~~l~~~~~~g~---i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-----~~v~~w   95 (162)
                      +++.++.|+.++.   -.+|.+|..+.....+..+...+.         ....+.+  ++++++.|+.+     ..+.+|
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~---------~~~~~~~--~~~iyv~GG~~~~~~~~~v~~y  236 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS---------GAGVCVL--HNCIYAAGGYDGQDQLNSVERY  236 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB---------SCEEEEE--TTEEEEECCBCSSSBCCCEEEE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccc---------cceEEEE--CCEEEEEeCCCCCCccceEEEE
Confidence            5667777765432   123446665533443322221111         1122222  56777787654     568899


Q ss_pred             eCCCcccee--eeeecccceeEEEcCCCCEEEEecCC-----CeEEEEeCCCcee
Q psy1859          96 DGFNKKRLC--QFHRYDTGITSLFHQEYNTFATGGSD-----GYVNIWDGFNKKR  143 (162)
Q Consensus        96 d~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~  143 (162)
                      |+.+.+...  .+.........+. -++++++.|+.+     ..+.+||+.+.+-
T Consensus       237 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  290 (308)
T 1zgk_A          237 DVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTW  290 (308)
T ss_dssp             ETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             eCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence            988754332  2221111112222 256777777743     4688999987753

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.22  E-value=0.88  Score=34.12  Aligned_cols=109  Identities=13%  Similarity=0.065  Sum_probs=60.0

Q ss_pred             CCCeEEEEcCCCc----EEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC--eEEEEeC
Q psy1859          24 NKQGYVLSSIEGR----AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG--YVNIWDG   97 (162)
Q Consensus        24 ~~~~l~~~~~~g~----i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~--~v~~wd~   97 (162)
                      +++.++.|+.++.    -.+|.+|..+........+...+.          -.+++.-.++.+++.|+.++  .+.+||.
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~----------~h~~~~~~~~~iyv~GG~~~~~~v~~yd~  520 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF----------RHSACSLPDGNVLILGGVTEGPAMLLYNV  520 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB----------SCEEEECTTSCEEEECCBCSSCSEEEEET
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc----------cceEEEEcCCEEEEECCCCCCCCEEEEEC
Confidence            6777777765431    135557766543444433222211          11222223678888887654  6899999


Q ss_pred             CCccceeee-----eecccceeEE-EcCC-CCEEEEecC--C-----CeEEEEeCCCce
Q psy1859          98 FNKKRLCQF-----HRYDTGITSL-FHQE-YNTFATGGS--D-----GYVNIWDGFNKK  142 (162)
Q Consensus        98 ~~~~~~~~~-----~~~~~~v~~~-~~~~-~~~l~~~~~--d-----~~i~iwd~~~~~  142 (162)
                      .+.+....-     .........+ +..+ +++++.|+.  +     ..+.+||+.+..
T Consensus       521 ~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          521 TEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             TTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            876433221     1112222334 5554 667777765  2     468889987765

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=93.13  E-value=2.3  Score=33.31  Aligned_cols=37  Identities=14%  Similarity=0.145  Sum_probs=31.4

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeee
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF  106 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~  106 (162)
                      .+.+++..++..++++-+.|+.+++|++.+++++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4677778888889999999999999999998876654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.11  E-value=1.4  Score=33.06  Aligned_cols=112  Identities=13%  Similarity=0.171  Sum_probs=59.6

Q ss_pred             eCCCeEEEEcCCCcEEEEEecCCcccceeeee---eeeeeeccCcccceeceEEEEecCC-CCEEEEecC--C-----Ce
Q psy1859          23 PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYA---FKCHRIKEDGIEKIYPVNAISFHQE-YNTFATGGS--D-----GY   91 (162)
Q Consensus        23 ~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~--d-----~~   91 (162)
                      .+++.++.|+.++.-.+|.+|..+........   ....+.         ...++.+..+ +++++.|+.  +     ..
T Consensus       499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~---------~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~  569 (695)
T 2zwa_A          499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSL---------VSAGLEFDPVSKQGIILGGGFMDQTTVSDK  569 (695)
T ss_dssp             TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCC---------BSCEEEEETTTTEEEEECCBCTTSSCBCCE
T ss_pred             cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccc---------ceeEEEEeCCCCEEEEECCcCCCCCeeeCc
Confidence            36788888866542244557766533443322   111111         1233555555 667777765  2     46


Q ss_pred             EEEEeCCCccc-----eeeeee---cccceeEE-EcCCCCEEEEecC--------CCeEEEEeCCCcee
Q psy1859          92 VNIWDGFNKKR-----LCQFHR---YDTGITSL-FHQEYNTFATGGS--------DGYVNIWDGFNKKR  143 (162)
Q Consensus        92 v~~wd~~~~~~-----~~~~~~---~~~~v~~~-~~~~~~~l~~~~~--------d~~i~iwd~~~~~~  143 (162)
                      +..||+.+.+.     -..+..   ....-..+ ...++++++.|+.        ...+.+||+.+.+-
T Consensus       570 v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W  638 (695)
T 2zwa_A          570 AIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL  638 (695)
T ss_dssp             EEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred             EEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence            88999887662     111111   11111122 2333777777774        34689999987653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=92.74  E-value=1.4  Score=29.02  Aligned_cols=108  Identities=13%  Similarity=0.125  Sum_probs=55.1

Q ss_pred             eCCCeEEEEcCC--CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC------CeEEE
Q psy1859          23 PNKQGYVLSSIE--GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD------GYVNI   94 (162)
Q Consensus        23 ~~~~~l~~~~~~--g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d------~~v~~   94 (162)
                      -++..++.|+.+  ..-.+|.+|..+........+...+.         ....+.+  ++++++.|+.+      ..+.+
T Consensus        54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~---------~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~  122 (306)
T 3ii7_A           54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD---------SLAACAA--EGKIYTSGGSEVGNSALYLFEC  122 (306)
T ss_dssp             ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB---------SCEEEEE--TTEEEEECCBBTTBSCCCCEEE
T ss_pred             ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc---------ceeEEEE--CCEEEEECCCCCCCcEeeeEEE
Confidence            356667777654  12234557766533443322221111         1112222  56777777754      46889


Q ss_pred             EeCCCccceee--eeecccceeEEEcCCCCEEEEecC---------CCeEEEEeCCCce
Q psy1859          95 WDGFNKKRLCQ--FHRYDTGITSLFHQEYNTFATGGS---------DGYVNIWDGFNKK  142 (162)
Q Consensus        95 wd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~  142 (162)
                      ||..+.+....  +.........+ .-++++++.|+.         -..+.+||+.+.+
T Consensus       123 ~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~  180 (306)
T 3ii7_A          123 YDTRTESWHTKPSMLTQRCSHGMV-EANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET  180 (306)
T ss_dssp             EETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred             EeCCCCceEeCCCCcCCcceeEEE-EECCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence            99887643222  21111111122 125666777653         3458899998765

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=92.70  E-value=0.41  Score=32.33  Aligned_cols=55  Identities=15%  Similarity=-0.035  Sum_probs=27.8

Q ss_pred             eEEEEeCCCcccee--eeeecccceeEEEcCCCCEEEEecCCC------eEEEEeCCCceeeee
Q psy1859          91 YVNIWDGFNKKRLC--QFHRYDTGITSLFHQEYNTFATGGSDG------YVNIWDGFNKKRLCQ  146 (162)
Q Consensus        91 ~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~  146 (162)
                      .+.+||+.+.+...  .+......... ..-++++++.|+.++      .+.++++++++.+..
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVS-LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEE-EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             eEEEEecCCCceeeCCCCCCCccccee-EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence            57789988754332  22221222122 223677888887542      456668887775543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=92.70  E-value=1.6  Score=29.87  Aligned_cols=98  Identities=9%  Similarity=0.056  Sum_probs=59.3

Q ss_pred             EEEEEEeeCCCeEEEEcC---------------CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC
Q psy1859          16 TRCIKCFPNKQGYVLSSI---------------EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY   80 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~---------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~   80 (162)
                      ...+.+.++|.++++...               ...-.||.++..+  .+..  ..+-.          ..+.++|+|++
T Consensus       167 pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~--~~~~--~~~l~----------~pNGia~spDg  232 (355)
T 3sre_A          167 VNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND--VRVV--AEGFD----------FANGINISPDG  232 (355)
T ss_dssp             EEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC--CEEE--EEEES----------SEEEEEECTTS
T ss_pred             CceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe--EEEe--ecCCc----------ccCcceECCCC
Confidence            467888888887776531               1234566676532  2211  12211          47899999999


Q ss_pred             CEEE-EecCCCeEEEEeCCC-ccc--eeeeeecccceeEE-EcC-CCCEEEEec
Q psy1859          81 NTFA-TGGSDGYVNIWDGFN-KKR--LCQFHRYDTGITSL-FHQ-EYNTFATGG  128 (162)
Q Consensus        81 ~~l~-~~~~d~~v~~wd~~~-~~~--~~~~~~~~~~v~~~-~~~-~~~~l~~~~  128 (162)
                      +.+. +-+..+.|..|++.. ++.  .+.+ ...+..-.+ +.+ +|.+.+++.
T Consensus       233 ~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          233 KYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEE
T ss_pred             CEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEec
Confidence            6555 455778999999864 322  1223 223445566 888 588777664

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.65  E-value=1.4  Score=29.03  Aligned_cols=63  Identities=17%  Similarity=0.198  Sum_probs=37.3

Q ss_pred             CCCEEEEecCC-----CeEEEEeCCCcccee--eeeecccceeEEEcCCCCEEEEecCC-----CeEEEEeCCCce
Q psy1859          79 EYNTFATGGSD-----GYVNIWDGFNKKRLC--QFHRYDTGITSLFHQEYNTFATGGSD-----GYVNIWDGFNKK  142 (162)
Q Consensus        79 ~~~~l~~~~~d-----~~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~  142 (162)
                      ++.+++.|+.+     ..+.+||+.+.+...  .+.........+.. ++++++.|+.+     ..+.+||+.+.+
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            56777777654     458889988754322  22211112222211 56777777654     568999998765

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=92.64  E-value=1.6  Score=29.70  Aligned_cols=44  Identities=5%  Similarity=-0.119  Sum_probs=28.0

Q ss_pred             CCCCEEEEecCCCeEEEEeCCCc-eee--eee-ccCCCceeEEEecCC
Q psy1859         119 QEYNTFATGGSDGYVNIWDGFNK-KRL--CQF-HRYDTGITSLCFSYD  162 (162)
Q Consensus       119 ~~~~~l~~~~~d~~i~iwd~~~~-~~~--~~~-~~~~~~v~~v~~~pd  162 (162)
                      .+|.++++.-..+.|...++... +..  ..+ ......+.++++.||
T Consensus       275 ~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pD  322 (354)
T 3a9g_A          275 LRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDD  322 (354)
T ss_dssp             GTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTT
T ss_pred             cCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCC
Confidence            46777777767788888888643 221  222 222346888888886

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.85  E-value=2.5  Score=30.10  Aligned_cols=113  Identities=11%  Similarity=-0.007  Sum_probs=56.1

Q ss_pred             cEEEEEEeeCCC-eEEEEcCCCcEEEEEecCCccc-ceeeeeeeeeeeccCcccceeceEEEEecCC----CCEEEEecC
Q psy1859          15 QTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEM-QKMKYAFKCHRIKEDGIEKIYPVNAISFHQE----YNTFATGGS   88 (162)
Q Consensus        15 ~~~~i~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~l~~~~~   88 (162)
                      +-..|++.|++. .++++...|.|++  ++..... ...+..+...-.......-......|+|+|+    +.+.++-+.
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~--~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKI--LTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEE--ECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEE--EeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            346899999986 5666677898888  4432210 1111111100000000001235789999996    444444322


Q ss_pred             --C----------CeEEEEeCCCc----------cceeeee--ecccceeEE-EcCCCCEEEEecC
Q psy1859          89 --D----------GYVNIWDGFNK----------KRLCQFH--RYDTGITSL-FHQEYNTFATGGS  129 (162)
Q Consensus        89 --d----------~~v~~wd~~~~----------~~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~  129 (162)
                        +          ..|.-|.+..+          +.+..+.  ........+ |.|||.+.++.+.
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence              1          14444555421          1222222  112335577 9999987776654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=91.31  E-value=2.2  Score=28.41  Aligned_cols=65  Identities=8%  Similarity=-0.103  Sum_probs=38.9

Q ss_pred             EEecCCCCEEEEec----CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecC-CCeEEEEeCCCcee
Q psy1859          74 ISFHQEYNTFATGG----SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS-DGYVNIWDGFNKKR  143 (162)
Q Consensus        74 ~~~~p~~~~l~~~~----~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d~~i~iwd~~~~~~  143 (162)
                      ..|++++..|+-..    .+..|..-++.. .....+..+..    . ++++++.|+..+. ...|...++..+..
T Consensus       109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~  179 (302)
T 3s25_A          109 IYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSE  179 (302)
T ss_dssp             EEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEE
T ss_pred             cEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCE
Confidence            36677887766554    345565566653 33344433222    4 6777887776654 57888888866543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=91.03  E-value=2.6  Score=28.67  Aligned_cols=68  Identities=13%  Similarity=0.062  Sum_probs=40.5

Q ss_pred             ceEEEEecCCCC-EEEEecCCCeEEEEeCCCccc---eeee----eecccceeEE-EcCC---CCEEEEec-C-------
Q psy1859          70 PVNAISFHQEYN-TFATGGSDGYVNIWDGFNKKR---LCQF----HRYDTGITSL-FHQE---YNTFATGG-S-------  129 (162)
Q Consensus        70 ~v~~~~~~p~~~-~l~~~~~d~~v~~wd~~~~~~---~~~~----~~~~~~v~~~-~~~~---~~~l~~~~-~-------  129 (162)
                      ....|+|.|+++ ++++. ..|.|++++.. ++.   +..+    .........+ ++|+   +.+|+... .       
T Consensus        19 ~P~~i~~~pdG~~l~V~e-~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITL-RGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SEEEEEECSTTCCEEEEE-TTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CcEEEEEcCCCCEEEEEe-CCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            467999999998 66554 57999999854 322   1111    1123345778 9995   44444442 2       


Q ss_pred             CCeEEEEeCC
Q psy1859         130 DGYVNIWDGF  139 (162)
Q Consensus       130 d~~i~iwd~~  139 (162)
                      ...|..+++.
T Consensus        97 ~~~v~r~~~~  106 (353)
T 2g8s_A           97 GTAVGYGRLS  106 (353)
T ss_dssp             EEEEEEEEEC
T ss_pred             eeEEEEEEEC
Confidence            2356666654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.95  E-value=2.7  Score=28.74  Aligned_cols=53  Identities=11%  Similarity=0.085  Sum_probs=36.7

Q ss_pred             ccceeEE-EcCCCCEEEEecCCCeEEEEeCCCcee--eeee----ccCCCceeEEEecCC
Q psy1859         110 DTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKR--LCQF----HRYDTGITSLCFSYD  162 (162)
Q Consensus       110 ~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~----~~~~~~v~~v~~~pd  162 (162)
                      -.....+ |.|+|+++++--..|.|++++..+++.  +..+    .........|+|+||
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd   90 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD   90 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence            3456678 999999888776689999998765543  2222    123456788999885

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=90.38  E-value=3.6  Score=29.20  Aligned_cols=58  Identities=12%  Similarity=0.143  Sum_probs=37.1

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCccc--eeeeee------cccceeEE-EcCC---CCEEEEe
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR--LCQFHR------YDTGITSL-FHQE---YNTFATG  127 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~--~~~~~~------~~~~v~~~-~~~~---~~~l~~~  127 (162)
                      ....|+|.|+|+++++....+.|++++..+++.  +..+..      .......+ |+|+   ..+|..+
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~   97 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence            367999999999888776556788887655432  222211      23456678 9995   4544444

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=89.64  E-value=3.1  Score=27.47  Aligned_cols=63  Identities=16%  Similarity=0.188  Sum_probs=35.3

Q ss_pred             CCCEEEEecCC-------CeEEEEeCCCccceee--eeecccceeEEEcCCCCEEEEecC------CCeEEEEeCCCce
Q psy1859          79 EYNTFATGGSD-------GYVNIWDGFNKKRLCQ--FHRYDTGITSLFHQEYNTFATGGS------DGYVNIWDGFNKK  142 (162)
Q Consensus        79 ~~~~l~~~~~d-------~~v~~wd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~  142 (162)
                      ++.+++.|+.+       ..+.+||..+.+....  +...... .++...++++++.|+.      -..+.+||+.+.+
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEEETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence            46777777653       3577888887543321  1111111 1122236677777763      2358899998765

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=89.63  E-value=2.7  Score=31.01  Aligned_cols=58  Identities=12%  Similarity=0.125  Sum_probs=40.9

Q ss_pred             ceEEEEecCCCCEEEEecCC------------CeEEEEeCCCccceeeeee-cccceeEE-EcCCCCEEEEe
Q psy1859          70 PVNAISFHQEYNTFATGGSD------------GYVNIWDGFNKKRLCQFHR-YDTGITSL-FHQEYNTFATG  127 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d------------~~v~~wd~~~~~~~~~~~~-~~~~v~~~-~~~~~~~l~~~  127 (162)
                      ..-.|.|+|.|.+++....+            ..+.+.+..+++..+-+.. ....++.+ |+||++.|++.
T Consensus       477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            35679999999987776432            3566667666665444443 35678888 99999988776

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=89.33  E-value=3.3  Score=27.32  Aligned_cols=65  Identities=12%  Similarity=0.128  Sum_probs=36.9

Q ss_pred             CCCEEEEecCCC-----eEEEEeCCCcccee--eeeecccceeEEEcCCCCEEEEecCC--------------CeEEEEe
Q psy1859          79 EYNTFATGGSDG-----YVNIWDGFNKKRLC--QFHRYDTGITSLFHQEYNTFATGGSD--------------GYVNIWD  137 (162)
Q Consensus        79 ~~~~l~~~~~d~-----~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d--------------~~i~iwd  137 (162)
                      ++++++.|+.++     .+.+||+.+.+...  .+.........+ .-++++++.|+.+              ..+.+||
T Consensus       196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd  274 (315)
T 4asc_A          196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYN  274 (315)
T ss_dssp             TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE-EECCEEEEECCccccCcCCccccccccCcEEEec
Confidence            567777777543     57889988754332  221111112222 1256777777653              2477899


Q ss_pred             CCCceee
Q psy1859         138 GFNKKRL  144 (162)
Q Consensus       138 ~~~~~~~  144 (162)
                      +.+.+-.
T Consensus       275 ~~~~~W~  281 (315)
T 4asc_A          275 EEEKKWE  281 (315)
T ss_dssp             TTTTEEE
T ss_pred             CCCChhh
Confidence            9877543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=89.23  E-value=3.4  Score=27.28  Aligned_cols=108  Identities=12%  Similarity=0.066  Sum_probs=55.4

Q ss_pred             eCCCeEEEEcC-----C--CcE--EEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC----
Q psy1859          23 PNKQGYVLSSI-----E--GRA--AVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD----   89 (162)
Q Consensus        23 ~~~~~l~~~~~-----~--g~i--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d----   89 (162)
                      .+++.++.|+.     .  ..+  .+|.+|..+...+....+...+.         ....+.+  ++.+++.|+.+    
T Consensus        44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~---------~~~~~~~--~~~lyv~GG~~~~~~  112 (315)
T 4asc_A           44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC---------LFGLGEA--LNSIYVVGGREIKDG  112 (315)
T ss_dssp             TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE---------SCEEEEE--TTEEEEECCEESSTT
T ss_pred             ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh---------ceeEEEE--CCEEEEEeCCcCCCC
Confidence            46777777763     1  122  26667876643433322222211         1112222  45677777632    


Q ss_pred             ----CeEEEEeCCCcccee--eeeecccceeEEEcCCCCEEEEecC-C-----CeEEEEeCCCce
Q psy1859          90 ----GYVNIWDGFNKKRLC--QFHRYDTGITSLFHQEYNTFATGGS-D-----GYVNIWDGFNKK  142 (162)
Q Consensus        90 ----~~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~-d-----~~i~iwd~~~~~  142 (162)
                          ..+.+||..+.+...  .+....... ++..-++++++.|+. +     ..+.+||..+.+
T Consensus       113 ~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A          113 ERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             CCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred             CcccceEEEECCCCCcEeECCCCCCcccce-eEEEECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence                458889988754322  221111111 122235667777765 2     468899988764

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.94  E-value=4.2  Score=32.54  Aligned_cols=37  Identities=14%  Similarity=0.145  Sum_probs=29.7

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeee
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF  106 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~  106 (162)
                      .+.+++..++..++++-+.|+.+++|++.+++++.+.
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~  275 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  275 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence            3455666777789999999999999999998776543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=88.90  E-value=3.9  Score=27.84  Aligned_cols=65  Identities=11%  Similarity=0.154  Sum_probs=42.6

Q ss_pred             CEEEEecCCCeEEEEeCCCccceeeeeecc-cceeEE---EcC-CCCEEEEe-cCCCeEEEEeCCCceeee
Q psy1859          81 NTFATGGSDGYVNIWDGFNKKRLCQFHRYD-TGITSL---FHQ-EYNTFATG-GSDGYVNIWDGFNKKRLC  145 (162)
Q Consensus        81 ~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~-~~v~~~---~~~-~~~~l~~~-~~d~~i~iwd~~~~~~~~  145 (162)
                      .+++.++.||.|.-.|..+|+...++.... .++...   -.+ ++..++.. ..||.|..++..+|....
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~   81 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL   81 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe
Confidence            467888999999999999998887776431 222221   111 22333343 589999999988875433

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=88.77  E-value=1.1  Score=33.72  Aligned_cols=36  Identities=11%  Similarity=0.081  Sum_probs=28.5

Q ss_pred             eeEEEcCCCCEEEEecCCCeEEEEeCCCceeeeeecc
Q psy1859         113 ITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR  149 (162)
Q Consensus       113 v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  149 (162)
                      |.++ ..+..++++-+.|..+|+|++++++++.+...
T Consensus       224 Is~~-~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          224 ISCK-LFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             EEEE-EETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             EEEe-ccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            4443 33477999999999999999999998777653

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=87.72  E-value=4.4  Score=26.76  Aligned_cols=66  Identities=20%  Similarity=0.200  Sum_probs=36.8

Q ss_pred             CCCEEEEecCC-----CeEEEEeCCCcccee--eeeecccceeEEEcCCCCEEEEecCC--------------CeEEEEe
Q psy1859          79 EYNTFATGGSD-----GYVNIWDGFNKKRLC--QFHRYDTGITSLFHQEYNTFATGGSD--------------GYVNIWD  137 (162)
Q Consensus        79 ~~~~l~~~~~d-----~~v~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d--------------~~i~iwd  137 (162)
                      ++++++.|+.+     ..+.+||+.+.+...  .+....... .+..-++++++.|+.+              ..+.+||
T Consensus       206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd  284 (318)
T 2woz_A          206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI-SLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYE  284 (318)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC-EEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEE
T ss_pred             CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce-EEEEECCEEEEECCeeccCCCCceeccceeeeEEEEe
Confidence            46777777643     357789988754322  222111111 2212256777777643              4588899


Q ss_pred             CCCceeee
Q psy1859         138 GFNKKRLC  145 (162)
Q Consensus       138 ~~~~~~~~  145 (162)
                      +.+.+-..
T Consensus       285 ~~~~~W~~  292 (318)
T 2woz_A          285 DDKKEWAG  292 (318)
T ss_dssp             TTTTEEEE
T ss_pred             CCCCEehh
Confidence            98876433

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=86.91  E-value=5.1  Score=26.67  Aligned_cols=102  Identities=8%  Similarity=-0.047  Sum_probs=54.9

Q ss_pred             EEEeeCCCeEEEEc--CCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec-CCCeEEEE
Q psy1859          19 IKCFPNKQGYVLSS--IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-SDGYVNIW   95 (162)
Q Consensus        19 i~~~~~~~~l~~~~--~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~v~~w   95 (162)
                      ..++++++.++...  .++.-.|+..+......+.+..   +           .+  .+++|+++.|.-.+ ....|..-
T Consensus       109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~---~-----------~~--~~~~~~g~~iy~t~~g~~~Iy~~  172 (302)
T 3s25_A          109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKN---H-----------YL--FTCNTSDRYFYYNNPKNGQLYRY  172 (302)
T ss_dssp             EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEES---S-----------CC--CCSEEETTEEEEECTTTCCEEEE
T ss_pred             cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeC---C-----------Cc--eEeeEECCEEEEEeCCCceEEEE
Confidence            36788888888765  3555566556654321222211   1           12  34567776665444 46778888


Q ss_pred             eCCCccceeeeeecccceeEE-EcCCCCEEEEecCC--CeEEEEeCCC
Q psy1859          96 DGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSD--GYVNIWDGFN  140 (162)
Q Consensus        96 d~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d--~~i~iwd~~~  140 (162)
                      ++..+.....+.   +.. .. ++|++++|+.....  ..|..-++..
T Consensus       173 ~l~g~~~~~l~~---~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG  216 (302)
T 3s25_A          173 DTASQSEALFYD---CNC-YKPVVLDDTNVYYMDVNRDNAIVHVNINN  216 (302)
T ss_dssp             ETTTTEEEEEEC---SCE-EEEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred             ECCCCCEEEEeC---CCc-cceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence            876544332222   112 23 55878777766533  3555556543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=86.06  E-value=12  Score=30.15  Aligned_cols=69  Identities=13%  Similarity=-0.059  Sum_probs=44.2

Q ss_pred             ceEEEEecCC------CCEEEEecC-CCeEEEEeCCCccceeeeee-cccceeEE-Ec--CCCCEEEEecCCCeEEEEeC
Q psy1859          70 PVNAISFHQE------YNTFATGGS-DGYVNIWDGFNKKRLCQFHR-YDTGITSL-FH--QEYNTFATGGSDGYVNIWDG  138 (162)
Q Consensus        70 ~v~~~~~~p~------~~~l~~~~~-d~~v~~wd~~~~~~~~~~~~-~~~~v~~~-~~--~~~~~l~~~~~d~~i~iwd~  138 (162)
                      .|.|+++.|.      ...++.|.. |+.++++++.+.+.+....- ......++ +.  ....+|..|-.||.+.-+.+
T Consensus       555 evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~  634 (1158)
T 3ei3_A          555 EVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGL  634 (1158)
T ss_dssp             CEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEE
T ss_pred             ceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEE
Confidence            6999999763      368888886 99999999986544432221 11233334 21  23357888888998755543

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=84.77  E-value=9.9  Score=28.12  Aligned_cols=59  Identities=10%  Similarity=0.083  Sum_probs=40.8

Q ss_pred             ceEEEEecCCCCEEEEecC------------CCeEEEEeCCCccceeeeee-cccceeEE-EcCCCCEEEEec
Q psy1859          70 PVNAISFHQEYNTFATGGS------------DGYVNIWDGFNKKRLCQFHR-YDTGITSL-FHQEYNTFATGG  128 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~------------d~~v~~wd~~~~~~~~~~~~-~~~~v~~~-~~~~~~~l~~~~  128 (162)
                      ....|.|.++|.+.+....            ...+..++..+++....+.. ....++.+ |+||++.|++.-
T Consensus       477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence            5678999999988774322            22677777766765444432 23567888 999999888764

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=84.06  E-value=4.9  Score=29.73  Aligned_cols=60  Identities=15%  Similarity=0.156  Sum_probs=35.6

Q ss_pred             EEEEEeeCCCeEEEEcCC----------CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe
Q psy1859          17 RCIKCFPNKQGYVLSSIE----------GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG   86 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~~----------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~   86 (162)
                      .-|+|+|.|++++.-..+          +.-.+|..+...+  +....+.++..        ..++.+.|+|+++.|...
T Consensus       479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g--~~~rf~~~P~g--------aE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG--EIRRFMVGPIG--------CEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTC--CEEEEEECCTT--------CEEEEEEECTTSSEEEEE
T ss_pred             cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCC--eEEEEEeCCCC--------ccCcCeeECCCCCEEEEE
Confidence            458899999866665332          2334555665542  22222233322        258999999999766554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=83.47  E-value=3.5  Score=30.48  Aligned_cols=70  Identities=11%  Similarity=0.002  Sum_probs=47.4

Q ss_pred             ceEEEEecCCCCEEEEe-cCCCeEEEEeCCCccc-------------eeeeeecccceeEE-EcCCCCEEEEecCCCeEE
Q psy1859          70 PVNAISFHQEYNTFATG-GSDGYVNIWDGFNKKR-------------LCQFHRYDTGITSL-FHQEYNTFATGGSDGYVN  134 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~-~~d~~v~~wd~~~~~~-------------~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~  134 (162)
                      ....+..+|+|++++.+ -.+..+.++|+++-..             ..... -.-..... |.++|.-..+.--|.+|.
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEE
Confidence            45689999999776655 5789999999985211             11222 23344555 999994444445899999


Q ss_pred             EEeCCC
Q psy1859         135 IWDGFN  140 (162)
Q Consensus       135 iwd~~~  140 (162)
                      -|++..
T Consensus       403 kWni~~  408 (638)
T 3sbq_A          403 KWNMEE  408 (638)
T ss_dssp             EEEHHH
T ss_pred             EEeccH
Confidence            999864

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=80.83  E-value=13  Score=26.67  Aligned_cols=71  Identities=11%  Similarity=-0.045  Sum_probs=48.4

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCC
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFN  140 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~  140 (162)
                      ...++..++....+..-+.-|.+.+||+.++.++..-+.....+... -+.+..=++.....|.|.--.+..
T Consensus       260 FPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          260 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred             ceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence            46688889988889999999999999999999987766555555444 333322333334666555444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	162
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-16
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.002
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.002
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.002
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.001
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.004

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.2 bits (175), Expect = 3e-16
 Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 2/141 (1%)

Query: 3   YIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEM--QKMKYAFKCHRI 60
                                 ++GY  SSI+GR AVE+ D   +      ++AF+CHR+
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243

Query: 61  KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQE 120
                   YPVN+I F   +    T GSDG ++ W+   +K++  F +++          
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACS 303

Query: 121 YNTFATGGSDGYVNIWDGFNK 141
            N      SD         ++
Sbjct: 304 DNILCLATSDDTFKTNAAIDQ 324

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 4e-07
 Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 17/110 (15%)

Query: 69  YPVNAISFHQEYNTFATGGSDGYVNIWD------GFNKKRLCQFHRYDTGITSL------ 116
              +     +E   +A    DG V +         +N  +   F  +   +         
Sbjct: 195 QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPV 254

Query: 117 ----FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
               F   +    T GSDG ++ W+   +K++  F +++   + +  +  
Sbjct: 255 NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACS 303

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 2e-04
 Identities = 10/84 (11%), Positives = 20/84 (23%), Gaps = 4/84 (4%)

Query: 71  VNAISFHQEYNTFATGGSDGYVNIWD---GFNKKRLCQFHRYDTGITSL-FHQEYNTFAT 126
           ++ I      +       DG + ++          L Q  RY   +    F    +    
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73

Query: 127 GGSDGYVNIWDGFNKKRLCQFHRY 150
            G+     +          Q    
Sbjct: 74  VGTVQGEILKVDLIGSPSFQALTN 97

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.1 bits (162), Expect = 2e-14
 Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 12/122 (9%)

Query: 17  RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF 76
             I  FPN   +   S +    +  L    E+    +                 + ++SF
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC-----------GITSVSF 278

Query: 77  HQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNI 135
            +       G  D   N+WD     R      +D  ++ L    +    ATG  D ++ I
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

Query: 136 WD 137
           W+
Sbjct: 339 WN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.0 bits (154), Expect = 2e-13
 Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 3/96 (3%)

Query: 70  PVNAISFHQEYNTFATGGSDGYVNI--WDGFNKKRLCQFHRYDTGITSL-FHQEYNTFAT 126
            +NAI F    N FATG  D    +       +           GITS+ F +       
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287

Query: 127 GGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
           G  D   N+WD     R      +D  ++ L  + D
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD 323

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.7 bits (109), Expect = 3e-07
 Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 3/118 (2%)

Query: 48  MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH 107
                +  +  +           V ++S   +   F +G  D    +WD         F 
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223

Query: 108 RYDTGITSL-FHQEYNTFATGGSDGYVNI--WDGFNKKRLCQFHRYDTGITSLCFSYD 162
            +++ I ++ F    N FATG  D    +       +           GITS+ FS  
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 9e-05
 Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 70  PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGG 128
            + A+ +  +     +   DG + IWD +   ++       + + +  +    N  A GG
Sbjct: 57  KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116

Query: 129 SDGYVNIWDGFNKKRLCQFHRYDTG 153
            D   +I++   ++   +  R   G
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAG 141

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 6/52 (11%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 112 GITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
            I ++ +  +     +   DG + IWD +   ++       + + +  ++  
Sbjct: 57  KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.8 bits (156), Expect = 1e-13
 Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 8/128 (6%)

Query: 17  RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF 76
             +    + Q  V  S++    +  L         K              K   V +++ 
Sbjct: 258 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK-DFVLSVAT 316

Query: 77  HQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-------FHQEYNTFATGGS 129
            Q      +G  D  V  WD  +   L     +   + S+          EYN FATG  
Sbjct: 317 TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 376

Query: 130 DGYVNIWD 137
           D    IW 
Sbjct: 377 DCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 3e-10
 Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 20/159 (12%)

Query: 18  CIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF 76
            +   P    Y+ + S++    V   +TG  ++++    +     +D       V ++ F
Sbjct: 209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD------SVYSVVF 262

Query: 77  HQEYNTFATGGSDGYVNIWDGFNKKR------------LCQFHRYDTGITSL-FHQEYNT 123
            ++  +  +G  D  V +W+  N                  +  +   + S+   Q    
Sbjct: 263 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY 322

Query: 124 FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
             +G  D  V  WD  +   L     +   + S+  +  
Sbjct: 323 ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 361

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (138), Expect = 3e-11
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 70  PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGG 128
            V  + FH       +   D  + +WD  NK+ +   + ++  +TSL FH+      TG 
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 308

Query: 129 SDGYVNIWD 137
            D  V +W+
Sbjct: 309 VDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (137), Expect = 5e-11
 Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 1/107 (0%)

Query: 57  CHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL 116
                   I +          +      +G  D  + +WD      L     +D  +  +
Sbjct: 194 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV 253

Query: 117 -FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
            FH       +   D  + +WD  NK+ +   + ++  +TSL F   
Sbjct: 254 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT 300

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 1e-05
 Identities = 9/79 (11%), Positives = 19/79 (24%)

Query: 70  PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGS 129
           PV  + FH  ++   +   D  + +WD            +   +  +            S
Sbjct: 19  PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 78

Query: 130 DGYVNIWDGFNKKRLCQFH 148
                    F      +  
Sbjct: 79  ADMTIKLWDFQGFECIRTM 97

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.0 bits (89), Expect = 1e-04
 Identities = 14/112 (12%), Positives = 29/112 (25%), Gaps = 21/112 (18%)

Query: 72  NAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH---------------------RYD 110
             +  +Q+    A+  +D  V +W    K+   +                          
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206

Query: 111 TGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
              T    +      +G  D  + +WD      L     +D  +  + F   
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSG 258

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.1 bits (79), Expect = 0.002
 Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 13/80 (16%)

Query: 17  RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF 76
           R +      +  +  + +    V        M+        H          + V ++ F
Sbjct: 251 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT----LNAHE---------HFVTSLDF 297

Query: 77  HQEYNTFATGGSDGYVNIWD 96
           H+      TG  D  V +W+
Sbjct: 298 HKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.1 bits (79), Expect = 0.002
 Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 112 GITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF 159
            +T + FH  ++   +   D  + +WD            +   +  + F
Sbjct: 19  PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.3 bits (126), Expect = 2e-09
 Identities = 11/84 (13%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 70  PVNAISFHQEYNTFATGGSDGYVNIWD--GFNKKRLCQFHRYDTGITSL-FHQEYNTFAT 126
           P++  +++++    A   ++  V+I++  G    ++ +   ++  +T + +  + N   T
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 127 GGSDGYVNIWDGFNKKRLCQFHRY 150
            G+D    +W    +         
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVIL 92

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.0 bits (81), Expect = 0.001
 Identities = 11/107 (10%), Positives = 29/107 (27%)

Query: 42  LDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKK 101
           ++  P             +  +       V+ + F    +  A    D  V + D   K 
Sbjct: 175 VEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM 234

Query: 102 RLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH 148
            +         + ++     ++    G D +  ++   +      F 
Sbjct: 235 AVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFG 281

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.0 bits (81), Expect = 0.001
 Identities = 7/53 (13%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 113 ITSL-FHQEYNTFATGGSDGYVNIWD--GFNKKRLCQFHRYDTGITSLCFSYD 162
           I+   ++++    A   ++  V+I++  G    ++ +   ++  +T + ++ D
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 2e-08
 Identities = 12/90 (13%), Positives = 26/90 (28%)

Query: 48  MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH 107
              ++        K         V ++ F      F + G D  +N W       + Q  
Sbjct: 245 SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 304

Query: 108 RYDTGITSLFHQEYNTFATGGSDGYVNIWD 137
              + ++     +     TG  D    +++
Sbjct: 305 ESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 7e-06
 Identities = 13/112 (11%), Positives = 30/112 (26%), Gaps = 1/112 (0%)

Query: 51  MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD 110
           ++        +    +    + ++ +       A G     V +       +        
Sbjct: 207 VRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHES 266

Query: 111 TGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
             ++  F      F + G D  +N W       + Q     + + S   S D
Sbjct: 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVD 317

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (78), Expect = 0.003
 Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 7/98 (7%)

Query: 70  PVNAISFHQEYNTFATGGSDGYVNIWD---GFNKKRLCQ--FHRYDTGITSL-FHQEYNT 123
            V A++         TG   G V +WD     NK  + Q      D  I S     +  T
Sbjct: 53  VVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT 111

Query: 124 FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY 161
              GG    ++IWD        +     +       + 
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 149

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-06
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 4/94 (4%)

Query: 48  MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF- 106
                 + +  +  ED  E +          +   FAT G+D  + +WD    K + ++ 
Sbjct: 231 SCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT 290

Query: 107 ---HRYDTGITSLFHQEYNTFATGGSDGYVNIWD 137
               +       +         +   DG +N ++
Sbjct: 291 LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 3e-06
 Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 9/100 (9%)

Query: 70  PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC--QFHRYDTGITSLFHQEYNTFATG 127
             + +      N   +G +D  V IWD    + L   Q         +      N   T 
Sbjct: 219 LTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS 276

Query: 128 GSDGYVNIWDGFNKKRLCQFHRYDTG-----ITSLCFSYD 162
             DG V +WD    + +      ++G     +  +  S  
Sbjct: 277 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 316

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 1e-04
 Identities = 11/68 (16%), Positives = 20/68 (29%)

Query: 95  WDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGI 154
           W     K       +D  + +      N   +G  D  + +W     K L     +  G+
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60

Query: 155 TSLCFSYD 162
            S     +
Sbjct: 61  WSSQMRDN 68

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 1e-04
 Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 1/70 (1%)

Query: 81  NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFN 140
               +G  D  + +WD      +     + +  + +  ++ N   +G +D  V IWD   
Sbjct: 188 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-NILVSGNADSTVKIWDIKT 246

Query: 141 KKRLCQFHRY 150
            + L      
Sbjct: 247 GQCLQTLQGP 256

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.002
 Identities = 11/115 (9%), Positives = 30/115 (26%), Gaps = 1/115 (0%)

Query: 48  MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH 107
                  +     +   +   +         +     +G  D  V +WD   +  L    
Sbjct: 115 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 174

Query: 108 RYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
            + T        +     +G  D  + +WD      +     + +  + +    +
Sbjct: 175 GH-TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN 228

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (95), Expect = 1e-05
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 1/91 (1%)

Query: 48  MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWD-GFNKKRLCQF 106
             K                K     A     E +  ATG  D  + I+      K +   
Sbjct: 195 EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL 254

Query: 107 HRYDTGITSLFHQEYNTFATGGSDGYVNIWD 137
           + +  G+ +L  +  +T  + G+D  +  W+
Sbjct: 255 NAHKDGVNNLLWETPSTLVSSGADACIKRWN 285

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.1 bits (94), Expect = 2e-05
 Identities = 13/93 (13%), Positives = 28/93 (30%), Gaps = 3/93 (3%)

Query: 48  MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWD---GFNKKRLC 104
           +                      V  +S+  +    ATG  D  V +W+     +   + 
Sbjct: 204 IPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII 263

Query: 105 QFHRYDTGITSLFHQEYNTFATGGSDGYVNIWD 137
           +     + + S+      T  + G D  +  W+
Sbjct: 264 KGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 1e-04
 Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 1/82 (1%)

Query: 70  PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG-ITSLFHQEYNTFATGG 128
            + A+S   +  T  +  ++G++N WD         F       IT +         T  
Sbjct: 14  AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS 73

Query: 129 SDGYVNIWDGFNKKRLCQFHRY 150
            D ++ +               
Sbjct: 74  WDDHLKVVPAGGSGVDSSKAVA 95

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 4e-05
 Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 16/82 (19%)

Query: 70  PVNAISFHQEYNTFATGGSDGYVNIWD------GFNKKRLCQFHRYDTGI--------TS 115
            + ++S     +   +   DGY+ +WD         K +      + +G+          
Sbjct: 16  DIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIE 73

Query: 116 LFHQEYNTFATGGSDGYVNIWD 137
               E    AT    G +  + 
Sbjct: 74  RDAFELCLVATTSFSGDLLFYR 95

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 5e-04
 Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 8/96 (8%)

Query: 70  PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-----FHQEYNTF 124
            V ++SF+    T  + G DG +  WD   K+R+   + +   I          +  ++ 
Sbjct: 291 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL 350

Query: 125 ATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS 160
           A  G      +  G    R       +  +  +C  
Sbjct: 351 AEPGVFDVKFLKKG---WRSGMGADLNESLCCVCLD 383

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.2 bits (79), Expect = 0.002
 Identities = 15/136 (11%), Positives = 31/136 (22%), Gaps = 21/136 (15%)

Query: 48  MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH 107
                        +   I     + ++ F  + +  A             +  +   +  
Sbjct: 211 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG 270

Query: 108 RYDTGITSL-----------------FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY 150
                  S                  F+    T  + G DG +  WD   K+R+   + +
Sbjct: 271 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 330

Query: 151 DTGI----TSLCFSYD 162
              I      L     
Sbjct: 331 CDDIEIEEDILAVDEH 346

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.3 bits (92), Expect = 4e-05
 Identities = 11/126 (8%), Positives = 35/126 (27%), Gaps = 8/126 (6%)

Query: 14  FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA 73
                ++  P+   +  +  +G   +     G +    +     +            V  
Sbjct: 190 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG------SVFG 243

Query: 74  ISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF--HRYDTGITSLFHQEYNTFATGGSDG 131
           +++  +    A+  +D  + IW+    K                          +  ++G
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303

Query: 132 YVNIWD 137
           ++N  +
Sbjct: 304 FINFVN 309

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 6e-05
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 71  VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSD 130
           +  + F   Y    TG  D  + ++D  NKK L Q   +D G+ +L +       +G +D
Sbjct: 16  ITCLQFEDNY--VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTD 73

Query: 131 GYVNIWDGFNKKRLCQFHRYDTGITSLCFSY 161
             V +WD         F  +++ +  L    
Sbjct: 74  RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE 104

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 2e-04
 Identities = 14/138 (10%), Positives = 36/138 (26%), Gaps = 1/138 (0%)

Query: 1   MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 60
              I    +++++                 + +      +              +  +  
Sbjct: 214 KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDY 273

Query: 61  KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG-ITSLFHQ 119
                     ++AI+     +     GS+   NI++  + K +      D   I S+  +
Sbjct: 274 SRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK 333

Query: 120 EYNTFATGGSDGYVNIWD 137
                A    DG   +  
Sbjct: 334 GKTLVAAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 2e-04
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 110 DTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 162
            T + +    E N   TG  D  + ++D  NKK L Q   +D G+ +L +++ 
Sbjct: 12  MTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.0 bits (81), Expect = 0.001
 Identities = 11/100 (11%), Positives = 25/100 (25%), Gaps = 5/100 (5%)

Query: 39  VEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF 98
            +  D       +      +R+       I   +     +    +      G +  +D  
Sbjct: 247 YDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK 306

Query: 99  NKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWD 137
            +K           +T L    +  T      DG +  + 
Sbjct: 307 TRKV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFP 342

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 0.004
 Identities = 11/70 (15%), Positives = 18/70 (25%), Gaps = 8/70 (11%)

Query: 76  FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLFHQEY--------NTFATG 127
              +     +G  DG + +WD                 T + H               + 
Sbjct: 224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSS 283

Query: 128 GSDGYVNIWD 137
             D  + IWD
Sbjct: 284 SHDDTILIWD 293

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.95
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.94
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.94
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.93
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.93
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.93
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.93
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.92
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.91
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.9
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.9
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.89
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.89
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.89
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.89
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.87
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.86
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.85
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.85
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.82
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.82
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.8
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.78
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.76
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.73
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.72
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.71
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.66
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.65
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.63
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.56
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.56
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.54
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.54
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.52
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.5
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.46
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.43
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.43
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.35
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.27
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.25
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.18
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.17
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.03
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.88
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.86
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.62
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.6
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.55
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.52
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.5
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.5
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.48
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.48
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.44
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.36
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.35
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.29
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.25
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.17
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.08
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.96
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.94
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.79
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.76
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.7
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.13
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.98
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.16
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.56
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.29
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.07
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.77
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.63
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.4
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.96
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.96
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.91
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.88
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.35
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.12
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.1
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	92.77
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	92.11
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	91.49
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.31
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.16
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	89.82
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	89.52
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.47
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	87.9
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	87.57
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	87.21
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	86.88
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	84.77

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=6.5e-27  Score=155.70  Aligned_cols=144  Identities=17%  Similarity=0.161  Sum_probs=123.0

Q ss_pred             eeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec
Q psy1859           8 RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG   87 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~   87 (162)
                      ....+...+.+++|+|++++|++|+.||.|+||+.....  ......+..|.         .+|.+++|+|+++++++++
T Consensus        53 ~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~--~~~~~~~~~~~---------~~v~~v~~s~d~~~l~~~~  121 (311)
T d1nr0a1          53 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT--HILKTTIPVFS---------GPVKDISWDSESKRIAAVG  121 (311)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT--CCEEEEEECSS---------SCEEEEEECTTSCEEEEEE
T ss_pred             EEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc--ccccccccccc---------Ccccccccccccccccccc
Confidence            334567889999999999999999999999997766543  33333444444         3799999999999998887


Q ss_pred             C--CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCE-EEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          88 S--DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNT-FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        88 ~--d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .  +..+++|++++++....+..|...|.++ |+|++++ +++|+.|+.|++||+++++....+..|...|+++.|+||
T Consensus       122 ~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~  200 (311)
T d1nr0a1         122 EGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD  200 (311)
T ss_dssp             CCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT
T ss_pred             ccccccccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcc
Confidence            5  4669999999999989999999999999 9999885 788999999999999999999999999999999999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.4e-27  Score=163.29  Aligned_cols=140  Identities=16%  Similarity=0.226  Sum_probs=111.0

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC---
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG---   90 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~---   90 (162)
                      ..+.+++|+|++ +|++|+.||.|+||+....    +.+..+....   ...+|..+|.+++|+|++++|++|+.|+   
T Consensus       185 ~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~----~~~~~~~~~~---~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~  256 (393)
T d1sq9a_         185 QFATSVDISERG-LIATGFNNGTVQISELSTL----RPLYNFESQH---SMINNSNSIRSVKFSPQGSLLAIAHDSNSFG  256 (393)
T ss_dssp             CCCCEEEECTTS-EEEEECTTSEEEEEETTTT----EEEEEEECCC------CCCCCEEEEEECSSTTEEEEEEEETTEE
T ss_pred             CcEEEEEECCCC-EEEEEeCCCcEEEEeeccc----cccccccccc---ccccccceEEEcccccccceeeeecCCCCcc
Confidence            446789999987 8899999999999665432    2333322211   1223666899999999999999999886   


Q ss_pred             eEEEEeCCCccceeeee-------------ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCcee-
Q psy1859          91 YVNIWDGFNKKRLCQFH-------------RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGIT-  155 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~-------------~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-  155 (162)
                      .|++||+++++.+..+.             +|...|+++ |+|++++|++++.|++|++||+++++++.++.+|.+.|. 
T Consensus       257 ~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~  336 (393)
T d1sq9a_         257 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI  336 (393)
T ss_dssp             EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSS
T ss_pred             eeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccC
Confidence            58999999887766553             688899999 999999999999999999999999999999999987664 


Q ss_pred             ---EEEecC
Q psy1859         156 ---SLCFSY  161 (162)
Q Consensus       156 ---~v~~~p  161 (162)
                         .++|+|
T Consensus       337 ~~~~~~~~~  345 (393)
T d1sq9a_         337 EEDILAVDE  345 (393)
T ss_dssp             GGGCCCBCT
T ss_pred             CccEEEECC
Confidence               345554

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=1.4e-26  Score=157.17  Aligned_cols=139  Identities=12%  Similarity=0.101  Sum_probs=115.6

Q ss_pred             cccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeE
Q psy1859          13 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV   92 (162)
Q Consensus        13 ~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v   92 (162)
                      ..+|+|++|+|++++|++|+.+|.|+||+.+..+  ......+++|..         +|.+++|+|++++|++++.|+.|
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~--~~~~~~l~gH~~---------~V~~l~fsp~~~~l~s~s~D~~i   75 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--WVQVHELKEHNG---------QVTGVDWAPDSNRIVTCGTDRNA   75 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE--EEEEEEEECCSS---------CEEEEEEETTTTEEEEEETTSCE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC--EEEEEEecCCCC---------CEEEEEECCCCCEEEEEECCCeE
Confidence            3678999999999999999999999998776544  455556666554         79999999999999999999999


Q ss_pred             EEEeCCCccc--eeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCcee----eeeeccCCCceeEEEecCC
Q psy1859          93 NIWDGFNKKR--LCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKR----LCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        93 ~~wd~~~~~~--~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~v~~~pd  162 (162)
                      ++||+.++..  ...+..+...+.++ |+|+++++++++.|+.+++|++.....    ......|...|.+++|+||
T Consensus        76 ~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  152 (371)
T d1k8kc_          76 YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN  152 (371)
T ss_dssp             EEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred             EEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccccccc
Confidence            9999987643  44455678889999 999999999999999999998865432    3334578889999999986

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.4e-25  Score=148.47  Aligned_cols=143  Identities=15%  Similarity=0.157  Sum_probs=117.5

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .+...|.+++|+|++++|++|+ ||.|+||+++...  .........      ...|...|.+++|+|++++|++++.|+
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~--~~~~~~~~~------~~~h~~~I~~v~~s~dg~~l~s~~~dg  119 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG--NKSPVSQLD------CLNRDNYIRSCKLLPDGCTLIVGGEAS  119 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT--CCSCSEEEE------CSCTTSBEEEEEECTTSSEEEEEESSS
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCc--ccceeEEee------ecCCCCcEEEEEEcCCCCEEEEeeccc
Confidence            4567889999999999999987 7999998776533  211111110      112555899999999999999999999


Q ss_pred             eEEEEeCCCc--cceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          91 YVNIWDGFNK--KRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        91 ~v~~wd~~~~--~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .|++||+...  +....+..|...+..+ |+|++.++++++.|+.+++||+++++.......|...|.+++|+|+
T Consensus       120 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  194 (337)
T d1gxra_         120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND  194 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999998754  4456667788889999 9999999999999999999999999998888899999999999875

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=4.6e-25  Score=149.66  Aligned_cols=142  Identities=15%  Similarity=0.179  Sum_probs=117.7

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      ....+.+++|+|+++.|++++.++.+++|.++..............         |...|.+++|+|++++|++++.|+.
T Consensus        94 ~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~---------~~~~v~~v~~~p~~~~l~s~s~D~~  164 (371)
T d1k8kc_          94 INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKP---------IRSTVLSLDWHPNSVLLAAGSCDFK  164 (371)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTT---------CCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccccccccccceeecccCcceeeeeecccccccccccccc---------cccccccccccccccceeccccCcE
Confidence            4566899999999999999999999999988865422222222222         4447999999999999999999999


Q ss_pred             EEEEeCCCcc------------------ceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCC
Q psy1859          92 VNIWDGFNKK------------------RLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT  152 (162)
Q Consensus        92 v~~wd~~~~~------------------~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  152 (162)
                      +++||.....                  .+.....|...+.++ |+|+++++++++.|+.|++||+.+++.+..+..|..
T Consensus       165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  244 (371)
T d1k8kc_         165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL  244 (371)
T ss_dssp             EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred             EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccc
Confidence            9999986432                  233445677889999 999999999999999999999999999999999999


Q ss_pred             ceeEEEecCC
Q psy1859         153 GITSLCFSYD  162 (162)
Q Consensus       153 ~v~~v~~~pd  162 (162)
                      +|.+++|+||
T Consensus       245 ~v~s~~fs~d  254 (371)
T d1k8kc_         245 PLLAVTFITE  254 (371)
T ss_dssp             CEEEEEEEET
T ss_pred             cceeeeecCC
Confidence            9999999986

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=1.2e-24  Score=144.70  Aligned_cols=140  Identities=18%  Similarity=0.242  Sum_probs=117.9

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCC--CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCC-EEEEe
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIE--GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN-TFATG   86 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~--g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~   86 (162)
                      ..+...+.+++|+|+++++++++.+  ..++||+++..+    ....+.+|.         ..|.+++|+|+++ .|++|
T Consensus        99 ~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~----~~~~l~~h~---------~~v~~v~~~~~~~~~l~sg  165 (311)
T d1nr0a1          99 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT----SNGNLTGQA---------RAMNSVDFKPSRPFRIISG  165 (311)
T ss_dssp             ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC----BCBCCCCCS---------SCEEEEEECSSSSCEEEEE
T ss_pred             ccccCcccccccccccccccccccccccccccccccccc----ccccccccc---------cccccccccccceeeeccc
Confidence            4456788999999999999988764  558898877543    333444444         3799999999986 58889


Q ss_pred             cCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec-------cCCCceeEEE
Q psy1859          87 GSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH-------RYDTGITSLC  158 (162)
Q Consensus        87 ~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~v~~v~  158 (162)
                      +.|+.|++||+++++....+..|...+.++ |+|+++++++++.|+.+++||++++..+..+.       +|...|++++
T Consensus       166 s~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~  245 (311)
T d1nr0a1         166 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT  245 (311)
T ss_dssp             ETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999998999999999 99999999999999999999999887766553       5788999999


Q ss_pred             ecCC
Q psy1859         159 FSYD  162 (162)
Q Consensus       159 ~~pd  162 (162)
                      |+||
T Consensus       246 ~s~~  249 (311)
T d1nr0a1         246 WSPD  249 (311)
T ss_dssp             ECTT
T ss_pred             cCCC
Confidence            9986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=3.8e-24  Score=142.26  Aligned_cols=138  Identities=22%  Similarity=0.319  Sum_probs=117.3

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      ....+....+.+.+.++++++.|+.+++|+..  +  .+....+.+|..         .|.+++|+|++++|++++.|+.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~--~--~~~~~~~~~h~~---------~i~~v~~~p~~~~l~s~s~d~~  249 (340)
T d1tbga_         183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVR--E--GMCRQTFTGHES---------DINAICFFPNGNAFATGSDDAT  249 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTTEEEEEETT--T--TEEEEEECCCSS---------CEEEEEECTTSSEEEEEETTSC
T ss_pred             cceeEeeeccccccceeEEeecCceEEEEECC--C--CcEEEEEeCCCC---------CeEEEEECCCCCEEEEEeCCCe
Confidence            34456677788889999999999999996554  3  444555555543         7999999999999999999999


Q ss_pred             EEEEeCCCccceeeee--ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          92 VNIWDGFNKKRLCQFH--RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~--~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |++||++.......+.  .+...+..+ |+|++++|++|+.||.|++||+.+++++.++.+|.+.|++++|+||
T Consensus       250 i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d  323 (340)
T d1tbga_         250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD  323 (340)
T ss_dssp             EEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             EEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCC
Confidence            9999999887766553  455678899 9999999999999999999999999999999999999999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1e-23  Score=138.51  Aligned_cols=150  Identities=13%  Similarity=0.122  Sum_probs=125.5

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeec---------------------------
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIK---------------------------   61 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~---------------------------   61 (162)
                      ...+.+.|.+++|+|++++|++|+.||+|+||+++..+    ....+.+|...                           
T Consensus        13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~----~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD----FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF   88 (317)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC----CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             EcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC----EEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence            34567789999999999999999999999998765432    22222221110                           


Q ss_pred             ------cCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEE
Q psy1859          62 ------EDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVN  134 (162)
Q Consensus        62 ------~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~  134 (162)
                            .....|...+.++.|+|++..+++++.|+.+++||+++++.+..+..+...+.++ |+|++.++++++.|+.|+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~  168 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR  168 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEE
Confidence                  0234466688899999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             EEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         135 IWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       135 iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +|++.+++.+..+..|...+.+++|+|+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~  196 (317)
T d1vyhc1         169 VWVVATKECKAELREHRHVVECISWAPE  196 (317)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECCS
T ss_pred             EEeeccceeeEEEecCCCCceEEEEeec
Confidence            9999999999999999999999999875

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=5.8e-24  Score=139.66  Aligned_cols=138  Identities=20%  Similarity=0.216  Sum_probs=118.2

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC------------
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE------------   79 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~------------   79 (162)
                      ....+.+++++|+++++++++.|+.+++|+....    .....+..+..         .+.+++|+|+            
T Consensus       142 ~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~----~~~~~~~~~~~---------~i~~~~~~~~~~~~~~~~~~~~  208 (317)
T d1vyhc1         142 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK----ECKAELREHRH---------VVECISWAPESSYSSISEATGS  208 (317)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----CEEEEECCCSS---------CEEEEEECCSCGGGGGGGCCSC
T ss_pred             CCCcceeeecccCCCEEEEEeCCCeEEEEeeccc----eeeEEEecCCC---------CceEEEEeeccccceeeccccc
Confidence            4566788999999999999999999999665543    33334444433         5777777665            


Q ss_pred             --------CCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccC
Q psy1859          80 --------YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY  150 (162)
Q Consensus        80 --------~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  150 (162)
                              +..+++++.|+.|++||+++++++..+..|...+.++ |+|++++|++++.||.|++||+++++++.++.+|
T Consensus       209 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h  288 (317)
T d1vyhc1         209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH  288 (317)
T ss_dssp             C-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC
T ss_pred             eeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCC
Confidence                    3468899999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             CCceeEEEecCC
Q psy1859         151 DTGITSLCFSYD  162 (162)
Q Consensus       151 ~~~v~~v~~~pd  162 (162)
                      .+.|++++|+||
T Consensus       289 ~~~V~~~~~s~~  300 (317)
T d1vyhc1         289 EHFVTSLDFHKT  300 (317)
T ss_dssp             SSCEEEEEECSS
T ss_pred             CCCEEEEEEcCC
Confidence            999999999986

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-23  Score=141.20  Aligned_cols=140  Identities=19%  Similarity=0.286  Sum_probs=120.7

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .+...|.+++|+|++++|++++.||.|++|++...+  .+....+..|..         .+..++|+|++.++++++.|+
T Consensus        95 ~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~---------~v~~~~~~~~~~~l~s~~~d~  163 (337)
T d1gxra_          95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT--PRIKAELTSSAP---------ACYALAISPDSKVCFSCCSDG  163 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC----EEEEEEECSSS---------CEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCcEEEEEEcCCCCEEEEeecccccccccccccc--cccccccccccc---------ccccccccccccccccccccc
Confidence            345679999999999999999999999998766544  444444444433         799999999999999999999


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .+++|++.+++.......|...+.++ |++++.++++++.|+.+++||+++++.+..+. |...|.+++|+|+
T Consensus       164 ~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~  235 (337)
T d1gxra_         164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPT  235 (337)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEccc
Confidence            99999999998888888889999999 99999999999999999999999999887764 7889999999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=7.1e-24  Score=140.93  Aligned_cols=116  Identities=22%  Similarity=0.372  Sum_probs=99.3

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG   90 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~   90 (162)
                      .+...+.+++|+|++++|++|+.||.+++|++....  .........         +...+.+++|+|++++|++|+.||
T Consensus       224 ~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~--~~~~~~~~~---------~~~~i~~~~~s~~~~~l~~g~~dg  292 (340)
T d1tbga_         224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDN---------IICGITSVSFSKSGRLLLAGYDDF  292 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCTT---------CCSCEEEEEECSSSCEEEEEETTS
T ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccc--ccccccccc---------ccCceEEEEECCCCCEEEEEECCC
Confidence            356778999999999999999999999997765433  222222112         333799999999999999999999


Q ss_pred             eEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEe
Q psy1859          91 YVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWD  137 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd  137 (162)
                      .|++||+.+++++..+.+|...|+++ |+|++++|++|+.||.|++||
T Consensus       293 ~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         293 NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            99999999999999999999999999 999999999999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=1.7e-22  Score=132.83  Aligned_cols=158  Identities=13%  Similarity=0.119  Sum_probs=115.3

Q ss_pred             ceeeeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccc-------eeeeeeeeeeecc---------------
Q psy1859           5 MQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQ-------KMKYAFKCHRIKE---------------   62 (162)
Q Consensus         5 ~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~-------~~~~~~~~~~~~~---------------   62 (162)
                      +.+....+...|.+++|+|++++|++|+.||.|++|+++......       ..+..+.-.+...               
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~   83 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPA   83 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECS
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEecc
Confidence            445566778889999999999999999999999998764322100       0000000000000               


Q ss_pred             -----------------------------------------------CcccceeceEEEEecCCCCEEEEecCCCeEEEE
Q psy1859          63 -----------------------------------------------DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW   95 (162)
Q Consensus        63 -----------------------------------------------~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~w   95 (162)
                                                                     ........+.+++|+|+++++++++.|+.+++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~  163 (299)
T d1nr0a2          84 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY  163 (299)
T ss_dssp             SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             CCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                                           000112246678899999999999999999999


Q ss_pred             eCCCcccee-eeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceee---eeeccCCCceeEEEecCC
Q psy1859          96 DGFNKKRLC-QFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRL---CQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        96 d~~~~~~~~-~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~v~~v~~~pd  162 (162)
                      |+++++... ....|...+.++ |+|+++++++++.|+.|++||+.++...   ..+..|...|++++|+|+
T Consensus       164 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~  235 (299)
T d1nr0a2         164 KLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD  235 (299)
T ss_dssp             EEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            998766543 334678899999 9999999999999999999999876543   345678999999999986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=4.1e-22  Score=134.96  Aligned_cols=141  Identities=16%  Similarity=0.212  Sum_probs=106.1

Q ss_pred             cEEEEEEee-CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEE
Q psy1859          15 QTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN   93 (162)
Q Consensus        15 ~~~~i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~   93 (162)
                      ...++.+++ ++++|++++.|+.+++|+.....    ....+....  ....+|...|.+++|+|++++|++++.|+.|+
T Consensus       206 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~----~~~~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~  279 (388)
T d1erja_         206 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF----LVERLDSEN--ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK  279 (388)
T ss_dssp             CEEEEEECSTTCCEEEEEETTSCEEEEETTTCC----EEEEEC--------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ccccccccCCCCCeEEEEcCCCeEEEeecccCc----cceeecccc--ccccCCCCCEEEEEECCCCCEEEEEECCCcEE
Confidence            344555555 78899999999999996655432    222211111  11234666899999999999999999999999


Q ss_pred             EEeCCCccc------------eeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEec
Q psy1859          94 IWDGFNKKR------------LCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS  160 (162)
Q Consensus        94 ~wd~~~~~~------------~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  160 (162)
                      +||++++..            ......|...+.++ |+|++++|++|+.||.|++||+++++++.++.+|.+.|++++++
T Consensus       280 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~  359 (388)
T d1erja_         280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA  359 (388)
T ss_dssp             EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             EEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEe
Confidence            999986532            22344567889999 99999999999999999999999999999999999999999865


Q ss_pred             C
Q psy1859         161 Y  161 (162)
Q Consensus       161 p  161 (162)
                      +
T Consensus       360 ~  360 (388)
T d1erja_         360 N  360 (388)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=5.2e-22  Score=134.48  Aligned_cols=144  Identities=19%  Similarity=0.259  Sum_probs=111.7

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeec---------cCcccceeceEEEEecCCCCE
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIK---------EDGIEKIYPVNAISFHQEYNT   82 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~v~~~~~~p~~~~   82 (162)
                      +...|.|++|+|+|++|++|+ |+.|+||+.....    ....+..+...         .....|...|.+++|+|++++
T Consensus        61 H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~  135 (388)
T d1erja_          61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGS----LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  135 (388)
T ss_dssp             CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCC----EEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             CCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccc----eEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence            567789999999999999986 8999997665422    22222222110         012346668999999999999


Q ss_pred             EEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          83 FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        83 l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      |++|+.|+.|++||...++.+..+..|...+.++ +++++..+++++.++.+++||.++.........+. ...++.|.|
T Consensus       136 l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~  214 (388)
T d1erja_         136 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED-GVTTVAVSP  214 (388)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS-CEEEEEECS
T ss_pred             ceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccccccccc-ccccccccC
Confidence            9999999999999999999998888999999999 99999999999999999999999888776665444 344455543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=5.5e-22  Score=132.30  Aligned_cols=131  Identities=16%  Similarity=0.144  Sum_probs=103.9

Q ss_pred             ccccEEEEEEeeCCCe-EEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC-CCEEEEecCC
Q psy1859          12 LKFQTRCIKCFPNKQG-YVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE-YNTFATGGSD   89 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~-l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d   89 (162)
                      +...+.+++|+|++++ +++++.|+.+++|+...    .+.......+      .+|...|.+++|+|+ +.++++++.|
T Consensus       158 h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~----~~~~~~~~~~------~~~~~~v~~v~~~pd~~~~l~s~~~d  227 (325)
T d1pgua1         158 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP----FKFSASDRTH------HKQGSFVRDVEFSPDSGEFVITVGSD  227 (325)
T ss_dssp             CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT----BEEEEEECSS------SCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred             cccccccccccccccceEEEeecccccccccccc----cccceecccc------cCCCCccEEeeeccccceeccccccc
Confidence            4567899999998875 67789999999965432    2222222222      125557999999997 5899999999


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-Ec---CCCCEEEEecCCCeEEEEeCCCceeeeeeccCCC
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FH---QEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT  152 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~---~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  152 (162)
                      +.|++||+++++.+..+..|...+..+ |+   |++++|++++.|+.|+|||+++++++..+..|..
T Consensus       228 ~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~  294 (325)
T d1pgua1         228 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ  294 (325)
T ss_dssp             CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred             cceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCC
Confidence            999999999999999998888777665 55   7899999999999999999999999888766554

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.5e-21  Score=128.35  Aligned_cols=145  Identities=19%  Similarity=0.114  Sum_probs=111.9

Q ss_pred             cccEEEEEEee--CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec--C
Q psy1859          13 KFQTRCIKCFP--NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG--S   88 (162)
Q Consensus        13 ~~~~~~i~~~~--~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~--~   88 (162)
                      ...+.+++|+|  +++++++|+.||+|+||++................     ...|..+|.+++|+++++.+++++  .
T Consensus        63 ~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~-----~~~~~~~v~~v~~s~~~~~l~~~~~~~  137 (325)
T d1pgua1          63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE-----FQVLAGPISDISWDFEGRRLCVVGEGR  137 (325)
T ss_dssp             TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEE-----EECCSSCEEEEEECTTSSEEEEEECCS
T ss_pred             CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccc-----cccccCcEEEEEECCCCCccceeeccc
Confidence            45689999998  56799999999999998876533111111111100     112455899999999998887765  4


Q ss_pred             CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCE-EEEecCCCeEEEEeCCCceeeeee---ccCCCceeEEEecCC
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNT-FATGGSDGYVNIWDGFNKKRLCQF---HRYDTGITSLCFSYD  162 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~v~~~pd  162 (162)
                      ++.+.+|+..+++.+..+..|...+.++ |+|++.+ +++++.|+.+++||....+....+   ..|...|++++|+||
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd  216 (325)
T d1pgua1         138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD  216 (325)
T ss_dssp             SCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST
T ss_pred             cceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccc
Confidence            6789999999999999999999999999 9998875 678899999999999887765544   456778999999986

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.4e-21  Score=129.19  Aligned_cols=81  Identities=19%  Similarity=0.114  Sum_probs=61.7

Q ss_pred             eeccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEe
Q psy1859           8 RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATG   86 (162)
Q Consensus         8 ~~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~   86 (162)
                      ++...+..|++|+|+|++++|++|+.||+|+||+++........ .....         |..+|.+++|+|++ .+|++|
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~-~~~~~---------h~~~V~~v~f~~~~~~~l~sg   75 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL-LQSLR---------YKHPLLCCNFIDNTDLQIYVG   75 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE-EEEEE---------CSSCEEEEEEEESSSEEEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEE-EEecC---------CCCCEEEEEEeCCCCCEEEEc
Confidence            44566777999999999999999999999999888765421111 11122         44479999999875 678889


Q ss_pred             cCCCeEEEEeCC
Q psy1859          87 GSDGYVNIWDGF   98 (162)
Q Consensus        87 ~~d~~v~~wd~~   98 (162)
                      +.|+.|++|++.
T Consensus        76 ~~d~~v~~w~~~   87 (342)
T d1yfqa_          76 TVQGEILKVDLI   87 (342)
T ss_dssp             ETTSCEEEECSS
T ss_pred             ccccceeeeecc
Confidence            999999998775

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.1e-21  Score=133.79  Aligned_cols=147  Identities=14%  Similarity=0.152  Sum_probs=108.1

Q ss_pred             cEEEEEEeeC-----CCeEEEEcCCCcEEEEEecCCcccce-----eeeeeeeeeeccCcccceeceEEEEecCCCCEEE
Q psy1859          15 QTRCIKCFPN-----KQGYVLSSIEGRAAVEYLDTGPEMQK-----MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA   84 (162)
Q Consensus        15 ~~~~i~~~~~-----~~~l~~~~~~g~i~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~   84 (162)
                      ....+++.++     +.++++++.||.+++|++........     ................+...+.+++|+|++ +|+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~la  199 (393)
T d1sq9a_         121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIA  199 (393)
T ss_dssp             CEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEE
T ss_pred             ceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEE
Confidence            3456677664     46789999999999998764321110     000001111111222344568899999987 889


Q ss_pred             EecCCCeEEEEeCCCccceeee------eecccceeEE-EcCCCCEEEEecCCC---eEEEEeCCCceeeeeec------
Q psy1859          85 TGGSDGYVNIWDGFNKKRLCQF------HRYDTGITSL-FHQEYNTFATGGSDG---YVNIWDGFNKKRLCQFH------  148 (162)
Q Consensus        85 ~~~~d~~v~~wd~~~~~~~~~~------~~~~~~v~~~-~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~------  148 (162)
                      +|+.|+.|++||+.+++++..+      ..|..+|.++ |+|+|++|++|+.|+   .|++||+++++.+..+.      
T Consensus       200 sgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~  279 (393)
T d1sq9a_         200 TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS  279 (393)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC----
T ss_pred             EEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccc
Confidence            9999999999999988766544      4578899999 999999999999887   49999999988776653      


Q ss_pred             -------cCCCceeEEEecCC
Q psy1859         149 -------RYDTGITSLCFSYD  162 (162)
Q Consensus       149 -------~~~~~v~~v~~~pd  162 (162)
                             +|.+.|++++|+||
T Consensus       280 ~~~~~~~gH~~~V~~l~fspd  300 (393)
T d1sq9a_         280 QASLGEFAHSSWVMSLSFNDS  300 (393)
T ss_dssp             ----CCBSBSSCEEEEEECSS
T ss_pred             cceeeeecccCceeeeccCCC
Confidence                   79999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.89  E-value=1.7e-21  Score=127.96  Aligned_cols=138  Identities=12%  Similarity=0.125  Sum_probs=106.7

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      ......+++++|+++++++++.+|.+++|+++...  .... ....         |...|.+++|+|++.++++++.|+.
T Consensus       135 ~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~--~~~~-~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~  202 (299)
T d1nr0a2         135 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS--VSEV-KTIV---------HPAEITSVAFSNNGAFLVATDQSRK  202 (299)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE--EEEE-EEEE---------CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccccccccccccccccccccccccccccc--cccc-cccc---------ccccccccccccccccccccccccc
Confidence            44567889999999999999999999997776433  2211 1122         3347999999999999999999999


Q ss_pred             EEEEeCCCccce---eeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeee--ecc-CCCceeEEEecC
Q psy1859          92 VNIWDGFNKKRL---CQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQ--FHR-YDTGITSLCFSY  161 (162)
Q Consensus        92 v~~wd~~~~~~~---~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~-~~~~v~~v~~~p  161 (162)
                      |++||+.++...   ..+..|...++++ |+|++++|++|+.|+.|++||++++.....  ... +...+.++.|.+
T Consensus       203 i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  279 (299)
T d1nr0a2         203 VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN  279 (299)
T ss_dssp             EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECC
Confidence            999999876544   3455688899999 999999999999999999999987653222  223 345677777654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.1e-20  Score=123.44  Aligned_cols=134  Identities=15%  Similarity=0.137  Sum_probs=103.6

Q ss_pred             EEEEEeeCCCeEEEEcCCC-cEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEE
Q psy1859          17 RCIKCFPNKQGYVLSSIEG-RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW   95 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~w   95 (162)
                      ...++++++..+++++.++ .+++|+...    ......+...        |...+.+++|+|++.+|++++.|+.|++|
T Consensus       122 ~~~~~~~~~~~~~v~~~~~~~v~~~~~~~----~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~g~~dg~i~i~  189 (287)
T d1pgua2         122 PGSAVSLSQNYVAVGLEEGNTIQVFKLSD----LEVSFDLKTP--------LRAKPSYISISPSETYIAAGDVMGKILLY  189 (287)
T ss_dssp             CEEEEEECSSEEEEEETTTSCEEEEETTE----EEEEEECSSC--------CSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeeeeeccCcceeeeccccceeeeeeccc----cceeeeeeec--------cCCceeEEEeccCccccccccccccccce
Confidence            3456778888888777664 688965432    2222221111        33379999999999999999999999999


Q ss_pred             eCCCcccee-eeeecccceeEE-EcCC----------CCEEEEecCCCeEEEEeCCC-ceeeeeeccCCCceeEEEecCC
Q psy1859          96 DGFNKKRLC-QFHRYDTGITSL-FHQE----------YNTFATGGSDGYVNIWDGFN-KKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        96 d~~~~~~~~-~~~~~~~~v~~~-~~~~----------~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |+.+++... .+..|...+.++ |+|+          +.++++|+.|+.|++||+++ ++.+..+.+|.+.|++++|+||
T Consensus       190 d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~  269 (287)
T d1pgua2         190 DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP  269 (287)
T ss_dssp             ETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET
T ss_pred             eecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCC
Confidence            999876543 456788899999 9874          46899999999999999976 4567777899999999999986

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1e-20  Score=123.64  Aligned_cols=117  Identities=18%  Similarity=0.292  Sum_probs=93.1

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC---------
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE---------   79 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---------   79 (162)
                      .......+.+++|+|++.+|++|+.+|.+++|+.....  . ....+..         |..+|.+++|+|.         
T Consensus       158 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~--~-~~~~~~~---------h~~~v~~~~~~p~~~~~~~~~~  225 (287)
T d1pgua2         158 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE--V-KTSRWAF---------RTSKINAISWKPAEKGANEEEI  225 (287)
T ss_dssp             SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--E-EECCSCC---------CSSCEEEEEECCCC------CC
T ss_pred             eeccCCceeEEEeccCccccccccccccccceeecccc--c-ccccccc---------cccccceeeecccccccccccC
Confidence            34466788999999999999999999999996654322  1 1112233         4447999999875         


Q ss_pred             -CCEEEEecCCCeEEEEeCCC-ccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeC
Q psy1859          80 -YNTFATGGSDGYVNIWDGFN-KKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDG  138 (162)
Q Consensus        80 -~~~l~~~~~d~~v~~wd~~~-~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~  138 (162)
                       +.++++|+.|+.|++||+++ .+.+..+.+|...|+++ |+|++ .+++++.|+.|++|++
T Consensus       226 ~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         226 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             SCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence             35899999999999999987 45566677899999999 99986 5889999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.1e-20  Score=122.34  Aligned_cols=129  Identities=18%  Similarity=0.192  Sum_probs=99.9

Q ss_pred             EEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeC
Q psy1859          18 CIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDG   97 (162)
Q Consensus        18 ~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~   97 (162)
                      ...+.+++.++++++.||.|++|+...    .+.+..+..|..         .+.++++++  ++|++++.|+.|++||+
T Consensus       180 ~~~~~~~~~~l~s~~~dg~i~~~d~~~----~~~~~~~~~~~~---------~v~~~~~~~--~~l~s~s~d~~i~iwd~  244 (342)
T d2ovrb2         180 VYSLQFDGIHVVSGSLDTSIRVWDVET----GNCIHTLTGHQS---------LTSGMELKD--NILVSGNADSTVKIWDI  244 (342)
T ss_dssp             EEEEEECSSEEEEEETTSCEEEEETTT----CCEEEEECCCCS---------CEEEEEEET--TEEEEEETTSCEEEEET
T ss_pred             cccccCCCCEEEEEeCCCeEEEeeccc----ceeeeEeccccc---------ceeEEecCC--CEEEEEcCCCEEEEEec
Confidence            455677899999999999999976554    334444444443         688887765  69999999999999999


Q ss_pred             CCccceeeeeec---ccceeEEEcCCCCEEEEecCCCeEEEEeCCCceeeeeec-----cCCCceeEEEecCC
Q psy1859          98 FNKKRLCQFHRY---DTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH-----RYDTGITSLCFSYD  162 (162)
Q Consensus        98 ~~~~~~~~~~~~---~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~v~~~pd  162 (162)
                      ...+....+..+   ...+.++ +++++++++++.||.|++||+++++.++.+.     +|...|++++|+||
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~  316 (342)
T d2ovrb2         245 KTGQCLQTLQGPNKHQSAVTCL-QFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT  316 (342)
T ss_dssp             TTCCEEEEECSTTSCSSCEEEE-EECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             ccccccccccccceeeeceeec-ccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCC
Confidence            988777666544   3344444 4456799999999999999999999887763     57778999999986

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=3.7e-20  Score=123.08  Aligned_cols=133  Identities=17%  Similarity=0.252  Sum_probs=104.9

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      ....+.++.++|+++.+++++.|+.+++|+...    ......+.+|..         .|.+++|++  ++|++++.||.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~----~~~~~~~~~h~~---------~v~~~~~~~--~~l~~~~~dg~  264 (355)
T d1nexb2         200 HTDRIYSTIYDHERKRCISASMDTTIRIWDLEN----GELMYTLQGHTA---------LVGLLRLSD--KFLVSAAADGS  264 (355)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEETTT----CCEEEEECCCSS---------CCCEEEECS--SEEEEECTTSE
T ss_pred             cccccccccccccceeeecccccceEEeeeccc----cccccccccccc---------ccccccccc--ceeeeeecccc
Confidence            445667888999999999999999999965543    344455555543         799999975  68999999999


Q ss_pred             EEEEeCCCccceeeeeecccceeEE--EcCCCCEEEEecCCCeEEEEeCCCceeee-eeccCCCceeEEEecCC
Q psy1859          92 VNIWDGFNKKRLCQFHRYDTGITSL--FHQEYNTFATGGSDGYVNIWDGFNKKRLC-QFHRYDTGITSLCFSYD  162 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~v~~~--~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~v~~~pd  162 (162)
                      |++||+++...  .+..|...+..+  +++++.++++| .|+.|++||+++++++. .+.+|.+.|++++|+|+
T Consensus       265 i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~  335 (355)
T d1nexb2         265 IRGWDANDYSR--KFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK  335 (355)
T ss_dssp             EEEEETTTCCE--EEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT
T ss_pred             cccccccccce--ecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC
Confidence            99999987654  344566666666  67787777666 58999999999999875 45789999999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.82  E-value=2.6e-19  Score=119.72  Aligned_cols=127  Identities=12%  Similarity=0.051  Sum_probs=102.0

Q ss_pred             EEEee-CCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC--CeEEEE
Q psy1859          19 IKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD--GYVNIW   95 (162)
Q Consensus        19 i~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d--~~v~~w   95 (162)
                      -.||| ||+++++++ +|.+.+|  +...  .... .+ .         |...|.+++|+|+|+.|++++.+  ..|++|
T Consensus         8 ~~fSP~dG~~~a~~~-~g~v~v~--d~~~--~~~~-~~-~---------~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~   71 (360)
T d1k32a3           8 EDFSPLDGDLIAFVS-RGQAFIQ--DVSG--TYVL-KV-P---------EPLRIRYVRRGGDTKVAFIHGTREGDFLGIY   71 (360)
T ss_dssp             EEEEECGGGCEEEEE-TTEEEEE--CTTS--SBEE-EC-S---------CCSCEEEEEECSSSEEEEEEEETTEEEEEEE
T ss_pred             ccccCCCCCEEEEEE-CCeEEEE--ECCC--CcEE-Ec-c---------CCCCEEEEEECCCCCEEEEEEcCCCCEEEEE
Confidence            56999 999999876 4788885  4443  2221 21 2         33479999999999888776544  378999


Q ss_pred             eCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          96 DGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        96 d~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |..+++. ..+..+...+..+ |+|+++++++++.++.+++|++.+++....+..|...+.+++|+||
T Consensus        72 d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd  138 (360)
T d1k32a3          72 DYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDN  138 (360)
T ss_dssp             ETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTT
T ss_pred             ECCCCcE-EEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccc
Confidence            9987654 4566788899999 9999999999999999999999999988888889889999999986

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.82  E-value=5.2e-19  Score=118.22  Aligned_cols=137  Identities=12%  Similarity=0.015  Sum_probs=107.5

Q ss_pred             cccccEEEEEEeeCCCeEEEEcCCC--cEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859          11 SLKFQTRCIKCFPNKQGYVLSSIEG--RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus        11 ~~~~~~~~i~~~~~~~~l~~~~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      .+...+.+++|+|||+.|++++.+.  .+.+|  +...  .+ ...+..+         ...+.+++|+|++++|++++.
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~--d~~~--~~-~~~~~~~---------~~~v~~~~~spdg~~l~~~~~  105 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIY--DYRT--GK-AEKFEEN---------LGNVFAMGVDRNGKFAVVAND  105 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEE--ETTT--CC-EEECCCC---------CCSEEEEEECTTSSEEEEEET
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEE--ECCC--Cc-EEEeeCC---------CceEEeeeecccccccceecc
Confidence            4567889999999999998876554  56665  4433  11 2222333         347999999999999999999


Q ss_pred             CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEec----------CCCeEEEEeCCCceeeeeeccCCCceeEE
Q psy1859          89 DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGG----------SDGYVNIWDGFNKKRLCQFHRYDTGITSL  157 (162)
Q Consensus        89 d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~v~~v  157 (162)
                      ++.+++|++.+++....+..+...+.++ |+|+|++|+.+.          .++.+++||+.+++.... ..+...+..+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~  184 (360)
T d1k32a3         106 RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTENSHDYAP  184 (360)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SCSSSBEEEE
T ss_pred             ccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeee-cccccccccc
Confidence            9999999999998888888888888999 999999998653          345799999998876554 4466778889


Q ss_pred             EecCC
Q psy1859         158 CFSYD  162 (162)
Q Consensus       158 ~~~pd  162 (162)
                      +|+||
T Consensus       185 ~~spd  189 (360)
T d1k32a3         185 AFDAD  189 (360)
T ss_dssp             EECTT
T ss_pred             cccCC
Confidence            99986

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=3.3e-18  Score=113.57  Aligned_cols=109  Identities=14%  Similarity=0.137  Sum_probs=84.1

Q ss_pred             EeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCc
Q psy1859          21 CFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNK  100 (162)
Q Consensus        21 ~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~  100 (162)
                      +++++++|++|+.||.|+||+..  +  .+.+..+.+|..         +|.+++|+|+ .+|++++.|+.|++|+....
T Consensus        19 ~~~~~~~l~tgs~Dg~i~vWd~~--~--~~~~~~l~~H~~---------~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~   84 (355)
T d1nexb2          19 LQFEDNYVITGADDKMIRVYDSI--N--KKFLLQLSGHDG---------GVWALKYAHG-GILVSGSTDRTVRVWDIKKG   84 (355)
T ss_dssp             EEEETTEEEEEETTTEEEEEETT--T--TEEEEEEECCSS---------CEEEEEEETT-TEEEEEETTCCEEEEETTTT
T ss_pred             EEECCCEEEEEeCCCeEEEEECC--C--CcEEEEEECCCC---------CEEEEEEcCC-CEEEEEeccccccccccccc
Confidence            45568999999999999996654  3  455666666554         7999999985 58999999999999999987


Q ss_pred             cceeeeeecccc--eeEE-EcCCCCEEEEecCCCeEEEEeCCCcee
Q psy1859         101 KRLCQFHRYDTG--ITSL-FHQEYNTFATGGSDGYVNIWDGFNKKR  143 (162)
Q Consensus       101 ~~~~~~~~~~~~--v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~  143 (162)
                      +...........  .... +++++.++++++.|+.|++||+++...
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~  130 (355)
T d1nexb2          85 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS  130 (355)
T ss_dssp             EEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC---
T ss_pred             ccccccccccccccccccccccccceeeeecCCCcEEEEEccCCce
Confidence            766555433332  3334 888999999999999999999987653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.6e-17  Score=108.61  Aligned_cols=135  Identities=10%  Similarity=0.054  Sum_probs=98.6

Q ss_pred             ccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          10 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        10 ~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ..+.+.|.+ +++++|++|++|+.||.|+||++..    .+.+..+.+|..         .|.+++|+|+  +|++++.|
T Consensus        13 ~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~----~~~~~~~~~h~~---------~V~~v~~~~~--~l~s~s~D   76 (342)
T d2ovrb2          13 KGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVT----GKCLRTLVGHTG---------GVWSSQMRDN--IIISGSTD   76 (342)
T ss_dssp             ECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTT----CCEEEECCCCSS---------CEEEEEEETT--EEEEEETT
T ss_pred             CCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCC----CCEEEEEeCCCC---------CEEEEEeCCC--ccccceec
Confidence            344455543 4677899999999999999976543    345555565544         7999999874  89999999


Q ss_pred             CeEEEEeCCCcccee-----------------------------------------------------------------
Q psy1859          90 GYVNIWDGFNKKRLC-----------------------------------------------------------------  104 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~-----------------------------------------------------------------  104 (162)
                      +.+++|+........                                                                 
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  156 (342)
T d2ovrb2          77 RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD  156 (342)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETT
T ss_pred             ccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCC
Confidence            999988876421100                                                                 


Q ss_pred             ---------------eeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         105 ---------------QFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       105 ---------------~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                                     .+..|  ..... +++++.++++++.|+.|++||++.++.+..+..|...+.+++++++
T Consensus       157 ~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~  228 (342)
T d2ovrb2         157 FMVKVWDPETETCLHTLQGH--TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN  228 (342)
T ss_dssp             SCEEEEEGGGTEEEEEECCC--SSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETT
T ss_pred             CeEEEeecccceeeEEEcCc--ccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCC
Confidence                           00001  11222 4567889999999999999999999999999999999999998864

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.5e-16  Score=102.86  Aligned_cols=132  Identities=15%  Similarity=0.211  Sum_probs=91.1

Q ss_pred             ccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      ....|.|+  ++++++|++|+.||.|+||+.+.    .+....+++|..         .|.+++|  ++++|++++.|+.
T Consensus        14 ~~~~V~c~--~~d~~~l~sgs~Dg~i~vWd~~~----~~~~~~l~~H~~---------~V~~v~~--~~~~l~s~s~D~~   76 (293)
T d1p22a2          14 TSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNT----LECKRILTGHTG---------SVLCLQY--DERVIITGSSDST   76 (293)
T ss_dssp             SCCCEEEE--ECCSSEEEEEESSSCEEEEESSS----CCEEEEECCCSS---------CEEEEEC--CSSEEEEEETTSC
T ss_pred             CCCCEEEE--EEcCCEEEEEeCCCeEEEEECCC----CcEEEEEecCCC---------CEeeeec--ccceeeccccccc
Confidence            34455654  56799999999999999976543    445556666554         7999987  4679999999999


Q ss_pred             EEEEeCCCccceeee-------------------------------------------eecccceeEEEcCCCCEEEEec
Q psy1859          92 VNIWDGFNKKRLCQF-------------------------------------------HRYDTGITSLFHQEYNTFATGG  128 (162)
Q Consensus        92 v~~wd~~~~~~~~~~-------------------------------------------~~~~~~v~~~~~~~~~~l~~~~  128 (162)
                      +++|++..+......                                           ..+...+..+ .+....+++++
T Consensus        77 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~s  155 (293)
T d1p22a2          77 VRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV-DFDDKYIVSAS  155 (293)
T ss_dssp             EEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEE-EEETTEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccc-eeccccccccc
Confidence            999999865322111                                           0111222222 22345677777


Q ss_pred             CCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859         129 SDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus       129 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      .|+.+++||+++++.+..+.++...+..+.+++
T Consensus       156 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~  188 (293)
T d1p22a2         156 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD  188 (293)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEEET
T ss_pred             CCCceeeecCCCCcEEEEEcccccccccccCCC
Confidence            888888888888887777777777777777654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.73  E-value=3.2e-17  Score=112.69  Aligned_cols=112  Identities=13%  Similarity=-0.030  Sum_probs=84.7

Q ss_pred             CeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccceee
Q psy1859          26 QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQ  105 (162)
Q Consensus        26 ~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~  105 (162)
                      -++++.+.||.|+||+  ..+  .+.+..+..+.          .+.+++|+|+|+++++++.|+.+++||+.+++....
T Consensus        33 ~~~V~~~~dg~v~vwD--~~t--~~~~~~l~~g~----------~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~   98 (426)
T d1hzua2          33 LFSVTLRDAGQIALVD--GDS--KKIVKVIDTGY----------AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV   98 (426)
T ss_dssp             EEEEEETTTTEEEEEE--TTT--CSEEEEEECCS----------SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred             EEEEEEcCCCEEEEEE--CCC--CcEEEEEeCCC----------CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEE
Confidence            3457788999999955  444  45555555543          489999999999999999999999999998865432


Q ss_pred             --ee---ecccceeEE-EcCCCCEEEEe-cCCCeEEEEeCCCceeeeeeccCC
Q psy1859         106 --FH---RYDTGITSL-FHQEYNTFATG-GSDGYVNIWDGFNKKRLCQFHRYD  151 (162)
Q Consensus       106 --~~---~~~~~v~~~-~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~  151 (162)
                        +.   .+...+.++ |+|||++++++ ..++.+++||..++..+..+..|.
T Consensus        99 ~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~  151 (426)
T d1hzua2          99 AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG  151 (426)
T ss_dssp             EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCE
T ss_pred             EEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccC
Confidence              22   445556666 99999987555 488999999999988777665444

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=4.3e-16  Score=107.37  Aligned_cols=140  Identities=9%  Similarity=-0.096  Sum_probs=101.5

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEE-EEecCCCeEE
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF-ATGGSDGYVN   93 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~d~~v~   93 (162)
                      .+..++|+|||+++++++.|+.+.+|+++..+  ......++..      ..|...+.+.+|+|+|+++ +++..++.+.
T Consensus        63 ~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~--~~~~~~i~~~------~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~  134 (432)
T d1qksa2          63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKE--PTTVAEIKIG------SEARSIETSKMEGWEDKYAIAGAYWPPQYV  134 (432)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSS--CCEEEEEECC------SEEEEEEECCSTTCTTTEEEEEEEETTEEE
T ss_pred             CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCC--ceEEEEEecC------CCCCCeEEecccCCCCCEEEEEcCCCCeEE
Confidence            46889999999999999999999997766543  3333322211      1133367788899999865 6788899999


Q ss_pred             EEeCCCccceeeeeec-----------ccceeEE-EcCCCCEE-EEecCCCeEEEEeCCCceeeeeec-cCCCceeEEEe
Q psy1859          94 IWDGFNKKRLCQFHRY-----------DTGITSL-FHQEYNTF-ATGGSDGYVNIWDGFNKKRLCQFH-RYDTGITSLCF  159 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~-----------~~~v~~~-~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~v~~  159 (162)
                      +||..+++++..+..+           ......+ ++|+|..+ ++...++.|.+||..+++...... .+...+.+++|
T Consensus       135 i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~  214 (432)
T d1qksa2         135 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGL  214 (432)
T ss_dssp             EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEE
T ss_pred             EEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceE
Confidence            9999998877766533           2344566 89988875 455678999999998776543332 34557888999


Q ss_pred             cCC
Q psy1859         160 SYD  162 (162)
Q Consensus       160 ~pd  162 (162)
                      +||
T Consensus       215 spd  217 (432)
T d1qksa2         215 DGS  217 (432)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            987

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=3.9e-17  Score=112.63  Aligned_cols=110  Identities=17%  Similarity=-0.027  Sum_probs=83.7

Q ss_pred             CeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCccce--
Q psy1859          26 QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRL--  103 (162)
Q Consensus        26 ~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~--  103 (162)
                      -++++.+.+|+|.||+  ..+  .+.+..+..+.          .+..++|+|+|+++++++.|+.+.+||+.+++..  
T Consensus        33 ~~~v~~~d~g~v~v~D--~~t--~~v~~~~~~g~----------~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~   98 (432)
T d1qksa2          33 LFSVTLRDAGQIALID--GST--YEIKTVLDTGY----------AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV   98 (432)
T ss_dssp             EEEEEETTTTEEEEEE--TTT--CCEEEEEECSS----------CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE
T ss_pred             EEEEEEcCCCEEEEEE--CCC--CcEEEEEeCCC----------CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE
Confidence            3457889999999954  444  44555554443          4899999999999999999999999999887543  


Q ss_pred             eeee---ecccceeEE-EcCCCCEE-EEecCCCeEEEEeCCCceeeeeecc
Q psy1859         104 CQFH---RYDTGITSL-FHQEYNTF-ATGGSDGYVNIWDGFNKKRLCQFHR  149 (162)
Q Consensus       104 ~~~~---~~~~~v~~~-~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~  149 (162)
                      ..+.   .+.+.+.+. |+|||+++ +++..++.+++||..+++.+..+..
T Consensus        99 ~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~  149 (432)
T d1qksa2          99 AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST  149 (432)
T ss_dssp             EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred             EEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeecc
Confidence            2332   445555666 89999986 6777899999999999988776654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.7e-15  Score=96.79  Aligned_cols=124  Identities=15%  Similarity=0.180  Sum_probs=96.0

Q ss_pred             eeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCCCcc
Q psy1859          22 FPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKK  101 (162)
Q Consensus        22 ~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~  101 (162)
                      .+....+++++.|+.+++|+..  +  .+.+..+.++..         .+..+.++  +..+++++.|+.|++||+++.+
T Consensus       145 ~~~~~~~~~~s~d~~i~~~d~~--~--~~~~~~~~~~~~---------~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~  209 (293)
T d1p22a2         145 DFDDKYIVSASGDRTIKVWNTS--T--CEFVRTLNGHKR---------GIACLQYR--DRLVVSGSSDNTIRLWDIECGA  209 (293)
T ss_dssp             EEETTEEEEEETTSEEEEEETT--T--CCEEEEEECCSS---------CEEEEEEE--TTEEEEEETTSCEEEEETTTCC
T ss_pred             eecccccccccCCCceeeecCC--C--CcEEEEEccccc---------ccccccCC--CCeEEEecCCCEEEEEecccce
Confidence            3345678889999999996554  3  344444454443         57777665  5689999999999999999998


Q ss_pred             ceeeeeecccceeEEEcCCCCEEEEecCCCeEEEEeCCC---------ceeeeeeccCCCceeEEEecC
Q psy1859         102 RLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFN---------KKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus       102 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      .+.....+...+.. +++++.+|++++.||.|++||+.+         ...+..+.+|.+.|++++|++
T Consensus       210 ~~~~~~~~~~~v~~-~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~  277 (293)
T d1p22a2         210 CLRVLEGHEELVRC-IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE  277 (293)
T ss_dssp             EEEEECCCSSCEEE-EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS
T ss_pred             eeeeecccceeeee-ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcC
Confidence            88888777766655 566788999999999999999753         235777889999999999976

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=5.3e-16  Score=102.04  Aligned_cols=84  Identities=12%  Similarity=0.063  Sum_probs=68.6

Q ss_pred             cceeceEEEEecCCCCEEEEecCCCeEEEEeCCCcccee---eeeecccceeEE-EcCC-CCEEEEecCCCeEEEEeCCC
Q psy1859          66 EKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC---QFHRYDTGITSL-FHQE-YNTFATGGSDGYVNIWDGFN  140 (162)
Q Consensus        66 ~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~---~~~~~~~~v~~~-~~~~-~~~l~~~~~d~~i~iwd~~~  140 (162)
                      +|.+.|++|+|+|++++|++++.|+.|++||+..+....   ....|..+|.++ |+|+ +.++++|+.|+.|++|++..
T Consensus         9 ~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~   88 (342)
T d1yfqa_           9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred             CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccc
Confidence            455689999999999999999999999999998754432   333688999999 9986 55899999999999999987


Q ss_pred             ceeeeeecc
Q psy1859         141 KKRLCQFHR  149 (162)
Q Consensus       141 ~~~~~~~~~  149 (162)
                      +........
T Consensus        89 ~~~~~~~~~   97 (342)
T d1yfqa_          89 SPSFQALTN   97 (342)
T ss_dssp             SSSEEECBS
T ss_pred             ccccccccc
Confidence            765554443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.63  E-value=6.8e-15  Score=97.04  Aligned_cols=125  Identities=14%  Similarity=0.015  Sum_probs=94.2

Q ss_pred             CeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEE-EEecCCCeEEEEeCCCcccee
Q psy1859          26 QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF-ATGGSDGYVNIWDGFNKKRLC  104 (162)
Q Consensus        26 ~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~d~~v~~wd~~~~~~~~  104 (162)
                      +++++++.|++|.||  |..+  .+.+..+..+..       ...+.+++|+|+|+++ ++++.++.|.+||+.+++.+.
T Consensus         2 ~~~vt~~~d~~v~v~--D~~s--~~~~~~i~~~~~-------~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~   70 (337)
T d1pbyb_           2 DYILAPARPDKLVVI--DTEK--MAVDKVITIADA-------GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG   70 (337)
T ss_dssp             EEEEEEETTTEEEEE--ETTT--TEEEEEEECTTC-------TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             eEEEEEcCCCEEEEE--ECCC--CeEEEEEECCCC-------CCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEE
Confidence            578999999999995  5544  444444443221       1147789999999876 567789999999999998887


Q ss_pred             eeeecc-----cceeEE-EcCCCCEEEEec------------CCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         105 QFHRYD-----TGITSL-FHQEYNTFATGG------------SDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       105 ~~~~~~-----~~v~~~-~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .+..+.     ..+..+ |+|++++++++.            .+..+.+||..+++....+.. ...+..++|+||
T Consensus        71 ~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~d  145 (337)
T d1pbyb_          71 RIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARD  145 (337)
T ss_dssp             EEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTT
T ss_pred             EEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCC
Confidence            776443     334567 999999998876            357899999999988887764 446788999886

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.56  E-value=1.1e-12  Score=85.00  Aligned_cols=135  Identities=7%  Similarity=0.026  Sum_probs=100.3

Q ss_pred             ccccEEEEEEeeCCCeEE-EEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCC-EEEEecCC
Q psy1859          12 LKFQTRCIKCFPNKQGYV-LSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN-TFATGGSD   89 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~-~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d   89 (162)
                      +......++++|+|++++ +++.++.|.+|+..  +  .+.+..+..+.          .+..++|++++. .++++..+
T Consensus        30 ~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~--t--~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~   95 (301)
T d1l0qa2          30 VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA--T--NNVIATVPAGS----------SPQGVAVSPDGKQVYVTNMAS   95 (301)
T ss_dssp             CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT--T--TEEEEEEECSS----------SEEEEEECTTSSEEEEEETTT
T ss_pred             CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC--C--Cceeeeeeccc----------ccccccccccccccccccccc
Confidence            335567899999999875 56778999995544  3  34444444433          378899999996 45566788


Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEE-EecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFA-TGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +.+.+|+..+++....+..+ .....+ |+|+++.++ ++..++.+.+|+..+++.+..+..+ ..+..+.|+||
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  168 (301)
T d1l0qa2          96 STLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPD  168 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTT
T ss_pred             ceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeecc
Confidence            89999999998887777644 455667 999999775 4557889999999999888777644 35777888875

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.56  E-value=4.1e-13  Score=87.19  Aligned_cols=119  Identities=10%  Similarity=0.052  Sum_probs=89.3

Q ss_pred             EEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEE-EEecCCCeEEEEeCCCccceeee
Q psy1859          28 YVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF-ATGGSDGYVNIWDGFNKKRLCQF  106 (162)
Q Consensus        28 l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~d~~v~~wd~~~~~~~~~~  106 (162)
                      +++.+.+++|.+|  |..+  .+.+..++...          .+..++|+|+|+++ +++..++.|.+||+.+++.+..+
T Consensus         5 yV~~~~~~~v~v~--D~~t--~~~~~~i~~g~----------~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~   70 (301)
T d1l0qa2           5 YIANSESDNISVI--DVTS--NKVTATIPVGS----------NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV   70 (301)
T ss_dssp             EEEETTTTEEEEE--ETTT--TEEEEEEECSS----------SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCEEEEE--ECCC--CeEEEEEECCC----------CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee
Confidence            4556788999995  5544  34444443322          37789999999866 57778999999999999988888


Q ss_pred             eecccceeEE-EcCCCCEEEE-ecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         107 HRYDTGITSL-FHQEYNTFAT-GGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       107 ~~~~~~v~~~-~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ..+. .+..+ |++++.++++ +..++.+.+|+..+++....+..+ ..+.++.|+||
T Consensus        71 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d  126 (301)
T d1l0qa2          71 PAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPD  126 (301)
T ss_dssp             ECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT
T ss_pred             eccc-cccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecC
Confidence            7654 45677 9999986554 557789999999999888877644 45678888876

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=1.3e-13  Score=90.81  Aligned_cols=124  Identities=12%  Similarity=-0.039  Sum_probs=84.8

Q ss_pred             EEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEE-EecCCCeEEEEeCCCccceeee
Q psy1859          28 YVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA-TGGSDGYVNIWDGFNKKRLCQF  106 (162)
Q Consensus        28 l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~~v~~wd~~~~~~~~~~  106 (162)
                      +++++.+++|++|+++...  .........         |...+..++|+|+|++|+ ++..|+.|.+|++........+
T Consensus         7 ~v~~~~~~~I~v~~~~~~~--~l~~~~~~~---------~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~   75 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEG--ALTLTQVVD---------VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF   75 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTS--CEEEEEEEE---------CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEECCCCCcEEEEEEcCCC--CeEEEEEEc---------CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE
Confidence            5677899999998887543  211221112         223689999999998775 5556899999999875443322


Q ss_pred             e---ecccceeEE-EcCCCCEEEEecC-CCeEEEEeCCCceeeee--eccCCCceeEEEecCC
Q psy1859         107 H---RYDTGITSL-FHQEYNTFATGGS-DGYVNIWDGFNKKRLCQ--FHRYDTGITSLCFSYD  162 (162)
Q Consensus       107 ~---~~~~~v~~~-~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~pd  162 (162)
                      .   .....+..+ |+|||+++++++. ++.+.+|+.........  ...+...+.++.|+||
T Consensus        76 ~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d  138 (333)
T d1ri6a_          76 AAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPD  138 (333)
T ss_dssp             EEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTT
T ss_pred             eeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeec
Confidence            2   234556778 9999999988874 67899998766554322  3345566777888875

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.54  E-value=2e-13  Score=93.61  Aligned_cols=141  Identities=9%  Similarity=-0.094  Sum_probs=92.2

Q ss_pred             ccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEE-EecCCCeE
Q psy1859          14 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA-TGGSDGYV   92 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~~v   92 (162)
                      ..+..++|+|||+++++++.|+.+++|+.+..+  ......++...      +|...+.+++|+|+|++++ ++..++.+
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~--~~~~~~i~~~~------~~~~~~~s~~~spDG~~l~v~~~~~~~v  133 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKE--PTKVAEIKIGI------EARSVESSKFKGYEDRYTIAGAYWPPQF  133 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSS--CEEEEEEECCS------EEEEEEECCSTTCTTTEEEEEEEESSEE
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCc--eeEEEEEeCCC------CCcceEEeeeecCCCCEEEEeecCCCeE
Confidence            356789999999999999999999997766543  33333322111      1334678889999998765 55588999


Q ss_pred             EEEeCCCccceeeeeecccce-----------eEE-EcCCCCEEEEec-CCCeEEEEeCCCcee-eeeeccCCCceeEEE
Q psy1859          93 NIWDGFNKKRLCQFHRYDTGI-----------TSL-FHQEYNTFATGG-SDGYVNIWDGFNKKR-LCQFHRYDTGITSLC  158 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~v-----------~~~-~~~~~~~l~~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~v~~v~  158 (162)
                      .+||...+.+...+..+...+           ..+ +++++..++... ..+.+.+++...... ......+...+..+.
T Consensus       134 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (426)
T d1hzua2         134 AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGG  213 (426)
T ss_dssp             EEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEE
T ss_pred             EEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeee
Confidence            999999988776665443333           334 556665554443 335565665554432 122234666788888


Q ss_pred             ecCC
Q psy1859         159 FSYD  162 (162)
Q Consensus       159 ~~pd  162 (162)
                      |+|+
T Consensus       214 ~~~~  217 (426)
T d1hzua2         214 WDSS  217 (426)
T ss_dssp             ECTT
T ss_pred             ECCC
Confidence            8875

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.52  E-value=7.5e-14  Score=92.23  Aligned_cols=115  Identities=5%  Similarity=-0.064  Sum_probs=84.5

Q ss_pred             EEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEE-EEecCCCeEEEEeC
Q psy1859          19 IKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF-ATGGSDGYVNIWDG   97 (162)
Q Consensus        19 i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~d~~v~~wd~   97 (162)
                      ++++++++++++++.++.|.+|+.  .+  .+.+.+++...        ...+.+++|+|+|+++ +++..++.|.+||+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~--~t--~~~~~t~~~~~--------~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~   69 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDV--AS--DTVYKSCVMPD--------KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL   69 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEET--TT--TEEEEEEECSS--------CCSSCEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEEC--CC--CCEEEEEEcCC--------CCCcceEEECCCCCEEEEEECCCCcEEEEeC
Confidence            367899999999999999999554  44  44444443221        1247899999999765 56678999999999


Q ss_pred             CCccceeeeeecc------cceeEE-EcCCCCEEEEec------------CCCeEEEEeCCCceeee
Q psy1859          98 FNKKRLCQFHRYD------TGITSL-FHQEYNTFATGG------------SDGYVNIWDGFNKKRLC  145 (162)
Q Consensus        98 ~~~~~~~~~~~~~------~~v~~~-~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~  145 (162)
                      .+++.+..+....      ..+..+ |+|||+++++++            .++.+.+||..+++...
T Consensus        70 ~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  136 (346)
T d1jmxb_          70 DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK  136 (346)
T ss_dssp             TTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred             ccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeee
Confidence            9998877665322      234567 999999988775            46788999988765443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.50  E-value=4e-13  Score=88.36  Aligned_cols=79  Identities=10%  Similarity=0.002  Sum_probs=66.3

Q ss_pred             eceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeee
Q psy1859          69 YPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQF  147 (162)
Q Consensus        69 ~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  147 (162)
                      ..+..++++|++.+++..  ++.+++||+.+++.+..+. +...+.++ |+|||++|++++.++.|++||.++++.+.++
T Consensus       241 ~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i  317 (337)
T d1pbyb_         241 VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             cceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            356677788888777665  5889999999998888775 45678889 9999999999999999999999999988887


Q ss_pred             ccC
Q psy1859         148 HRY  150 (162)
Q Consensus       148 ~~~  150 (162)
                      +..
T Consensus       318 ~~~  320 (337)
T d1pbyb_         318 DLP  320 (337)
T ss_dssp             ECG
T ss_pred             ECC
Confidence            643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=2.3e-12  Score=84.76  Aligned_cols=141  Identities=11%  Similarity=0.046  Sum_probs=93.8

Q ss_pred             ccccEEEEEEeeCCCeEEEE-cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec-CC
Q psy1859          12 LKFQTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-SD   89 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d   89 (162)
                      ..+.+..|+|+|||++|+++ ..++.|.+|+++...  .....  ..+..      +...+..++|+|+|+++++++ .+
T Consensus        35 ~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~--~~~~~--~~~~~------~~~~p~~l~~spDg~~l~v~~~~~  104 (333)
T d1ri6a_          35 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD--GALTF--AAESA------LPGSLTHISTDHQGQFVFVGSYNA  104 (333)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT--CCEEE--EEEEE------CSSCCSEEEECTTSSEEEEEETTT
T ss_pred             CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCC--CcEEE--eeecc------cCCCceEEEEcCCCCEEeecccCC
Confidence            44677899999999988655 558999998887654  22211  11111      112467899999998887776 57


Q ss_pred             CeEEEEeCCCccceee--eeecccceeEE-EcCCCCEEEEec-CCCeEEEEeCCCceeeee------eccCCCceeEEEe
Q psy1859          90 GYVNIWDGFNKKRLCQ--FHRYDTGITSL-FHQEYNTFATGG-SDGYVNIWDGFNKKRLCQ------FHRYDTGITSLCF  159 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~--~~~~~~~v~~~-~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~------~~~~~~~v~~v~~  159 (162)
                      +.+.+|+.........  ...+...+..+ ++|+++++++++ .+..+.+|+.........      .......+..++|
T Consensus       105 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~  184 (333)
T d1ri6a_         105 GNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF  184 (333)
T ss_dssp             TEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEE
T ss_pred             CceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEE
Confidence            7899998876544333  23445667778 999999888776 456799999865432111      1123345667777


Q ss_pred             cCC
Q psy1859         160 SYD  162 (162)
Q Consensus       160 ~pd  162 (162)
                      +++
T Consensus       185 ~~~  187 (333)
T d1ri6a_         185 HPN  187 (333)
T ss_dssp             CTT
T ss_pred             ecc
Confidence            764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.43  E-value=2e-12  Score=85.90  Aligned_cols=142  Identities=15%  Similarity=0.141  Sum_probs=95.7

Q ss_pred             EEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeecc-CcccceeceEEEEecCCCCEEEEecCC------
Q psy1859          17 RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE-DGIEKIYPVNAISFHQEYNTFATGGSD------   89 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~d------   89 (162)
                      ....+.+++..++.++.++.+.+|+.+...  .........+.... ...........+++++++..++....+      
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~  275 (355)
T d2bbkh_         198 NHPAYSQKAGRLVWPTYTGKIHQIDLSSGD--AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRH  275 (355)
T ss_dssp             SCCEEETTTTEEEEEBTTSEEEEEECTTSS--CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCT
T ss_pred             eeccccCCCCeEEEecCCCeEEEEecCCCc--EEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceee
Confidence            345677778888888999999997665433  22221111111000 000011234568899999776654332      


Q ss_pred             ----CeEEEEeCCCccceeeeeecccceeEE-EcCCCC--EEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          90 ----GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYN--TFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        90 ----~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                          ..|.+||..+++.+..+.. ...+.++ |+|||+  +++++..|+.|++||+++++.+.++..+......|.+.+
T Consensus       276 ~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d  353 (355)
T d2bbkh_         276 KTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD  353 (355)
T ss_dssp             TSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCC
T ss_pred             cCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCC
Confidence                4799999999988887764 4557888 999998  456677899999999999999999987766666666554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.43  E-value=6.2e-13  Score=87.75  Aligned_cols=89  Identities=10%  Similarity=-0.046  Sum_probs=72.6

Q ss_pred             EEecCCCCEEEEecCCCeEEEEeCCCccceeeeee-cccceeEE-EcCCCCEE-EEecCCCeEEEEeCCCceeeeeeccC
Q psy1859          74 ISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR-YDTGITSL-FHQEYNTF-ATGGSDGYVNIWDGFNKKRLCQFHRY  150 (162)
Q Consensus        74 ~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~-~~~~v~~~-~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~  150 (162)
                      ++|+++++++++++.++.|.+||+.+++.+.++.. +...+..+ |+|||+++ +++..++.|.+||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            57899999999999999999999999999888764 45567788 99999987 45567899999999999887766432


Q ss_pred             C------CceeEEEecCC
Q psy1859         151 D------TGITSLCFSYD  162 (162)
Q Consensus       151 ~------~~v~~v~~~pd  162 (162)
                      .      ..+..++|+||
T Consensus        82 ~~~~~~~~~~~~v~~s~D   99 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPD   99 (346)
T ss_dssp             CSTTEEEECSSCEEECTT
T ss_pred             ccccccCCceEEEEEecC
Confidence            2      23567888876

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.35  E-value=3.3e-12  Score=88.34  Aligned_cols=119  Identities=9%  Similarity=-0.048  Sum_probs=84.0

Q ss_pred             EEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC--------
Q psy1859          17 RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS--------   88 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--------   88 (162)
                      ..+.|.++++++..  .++.+.+|  +..++.....  +..+..    ..|...|.++.||||++.|+.++.        
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~--~~~t~~~~~~--~~~~~~----~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s   89 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVF--NAEYGNSSVF--LENSTF----DEFGHSINDYSISPDGQFILLEYNYVKQWRHS   89 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEE--ETTTCCEEEE--ECTTTT----TTSSSCCCEEEECTTSSEEEEEEEEEECSSSC
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEE--ECCCCCEEEE--Echhhh----hhccCccceeEECCCCCEEEEEECCcceeeec
Confidence            35779998876653  46778884  5444223322  222211    124446999999999998887743        


Q ss_pred             -CCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeee
Q psy1859          89 -DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQF  147 (162)
Q Consensus        89 -d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  147 (162)
                       ++.+.+||+.+++ +..+..+...+..+ |||||++++.. .++.+.+|+..+++..+..
T Consensus        90 ~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t  148 (470)
T d2bgra1          90 YTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRIT  148 (470)
T ss_dssp             EEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECC
T ss_pred             cCceEEEEECCCCc-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeee
Confidence             5788999999876 44566677788888 99999999986 5678999999888765543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.27  E-value=1.2e-10  Score=77.79  Aligned_cols=122  Identities=9%  Similarity=-0.101  Sum_probs=84.8

Q ss_pred             ccccEEEEEEeeCCCeEEEE---cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec-
Q psy1859          12 LKFQTRCIKCFPNKQGYVLS---SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-   87 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~---~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-   87 (162)
                      ..+.+..++++|+++.+++.   ..++...+|.+|..+  .+.+..+..+.           ...++|+|+|+++++++ 
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~t--g~~~~~~~~~~-----------~~~~a~SpDG~~l~va~~   85 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGS--GSILGHVNGGF-----------LPNPVAAHSGSEFALAST   85 (373)
T ss_pred             CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCC--CCEEEEEeCCC-----------CccEEEcCCCCEEEEEee
Confidence            45667889999999988765   334455566688766  45554444332           33799999999888764 


Q ss_pred             ---------CCCeEEEEeCCCccceeeeeecccc-------eeEE-EcCCCCEEEEec--CCCeEEEEeCCCceeeee
Q psy1859          88 ---------SDGYVNIWDGFNKKRLCQFHRYDTG-------ITSL-FHQEYNTFATGG--SDGYVNIWDGFNKKRLCQ  146 (162)
Q Consensus        88 ---------~d~~v~~wd~~~~~~~~~~~~~~~~-------v~~~-~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~  146 (162)
                               .++.|.+||..+++.+..+..+...       ...+ |+++++.++...  .++.+.+|+....+....
T Consensus        86 ~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~  163 (373)
T d2madh_          86 SFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL  163 (373)
T ss_pred             cCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE
Confidence                     4678999999999888776544332       2346 888888765554  456889999877665443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.25  E-value=9.3e-10  Score=73.35  Aligned_cols=78  Identities=12%  Similarity=0.118  Sum_probs=64.9

Q ss_pred             EEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCE--EEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEe
Q psy1859          83 FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNT--FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF  159 (162)
Q Consensus        83 l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~--l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~  159 (162)
                      +++...++.+.+||..+++.+..+. +...+..+ |+|||+.  +++++.|+.|++||+.+++.+.++..+....+.+++
T Consensus       291 ~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~  369 (373)
T d2madh_         291 WKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSV  369 (373)
T ss_pred             EEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEE
Confidence            3455667889999999998888775 55678889 9999984  467889999999999999999999888878888887


Q ss_pred             cC
Q psy1859         160 SY  161 (162)
Q Consensus       160 ~p  161 (162)
                      .+
T Consensus       370 ~~  371 (373)
T d2madh_         370 MN  371 (373)
T ss_pred             ec
Confidence            65

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.18  E-value=1.4e-10  Score=77.68  Aligned_cols=124  Identities=6%  Similarity=-0.178  Sum_probs=87.2

Q ss_pred             ccEEEEEEeeCCCeEE---EEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec---
Q psy1859          14 FQTRCIKCFPNKQGYV---LSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG---   87 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~---~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~---   87 (162)
                      ++...++..++++...   ....++...+|.+|..+  .+.......+           ....++|+|+|+.+++.+   
T Consensus        20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~--~~~~~~~~~~-----------~~~~~a~spDg~~i~~~~~~~   86 (368)
T d1mdah_          20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGC--GVTLGHSLGA-----------FLSLAVAGHSGSDFALASTSF   86 (368)
T ss_dssp             CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTT--TEEEEEEEEC-----------TTCEEEECTTSSCEEEEEEEE
T ss_pred             CCccccccCCCCcceeEEeeccCCCcceEEEEeCCC--CcEEEEEeCC-----------CCCcceECCCCCEEEEEcccC
Confidence            3344455667776532   24667888888888876  4444433332           234689999998877643   


Q ss_pred             -------CCCeEEEEeCCCccceeeeeeccc-------ceeEE-EcCCCCEEEEec-CCCeEEEEeCCCceeeeeeccC
Q psy1859          88 -------SDGYVNIWDGFNKKRLCQFHRYDT-------GITSL-FHQEYNTFATGG-SDGYVNIWDGFNKKRLCQFHRY  150 (162)
Q Consensus        88 -------~d~~v~~wd~~~~~~~~~~~~~~~-------~v~~~-~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~  150 (162)
                             .|+.|.+||..+++++..+..+..       ....+ |+|||++++++. .++.+.+||+.+++.+..+..+
T Consensus        87 ~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~  165 (368)
T d1mdah_          87 ARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSA  165 (368)
T ss_dssp             TTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECS
T ss_pred             ccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeecc
Confidence                   478899999999988877754322       23357 999999988776 5789999999999887776543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.17  E-value=6.6e-10  Score=73.50  Aligned_cols=115  Identities=11%  Similarity=-0.017  Sum_probs=80.0

Q ss_pred             EEeeCCCeEEEEcC-----CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEe--------
Q psy1859          20 KCFPNKQGYVLSSI-----EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG--------   86 (162)
Q Consensus        20 ~~~~~~~~l~~~~~-----~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~--------   86 (162)
                      +.+|+++.+++...     +..+.+  ||..+  .+.+..+...           ....++|+|+|++|++.        
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v--~D~~t--g~~~~~~~~g-----------~~~~~a~SpDg~~l~v~~~~~~~~~   72 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFV--IDGEA--GRVIGMIDGG-----------FLPNPVVADDGSFIAHASTVFSRIA   72 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEE--EETTT--TEEEEEEEEC-----------SSCEEEECTTSSCEEEEEEEEEETT
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEE--EECCC--CcEEEEEECC-----------CCCceEEcCCCCEEEEEeCCCcccc
Confidence            45789998876532     234555  67655  4444444333           24479999999877654        


Q ss_pred             --cCCCeEEEEeCCCccceeeeeecc-------cceeEE-EcCCCCEEEEec--CCCeEEEEeCCCceeeeeecc
Q psy1859          87 --GSDGYVNIWDGFNKKRLCQFHRYD-------TGITSL-FHQEYNTFATGG--SDGYVNIWDGFNKKRLCQFHR  149 (162)
Q Consensus        87 --~~d~~v~~wd~~~~~~~~~~~~~~-------~~v~~~-~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~  149 (162)
                        ..++.|++||+.+++.+..+..+.       .....+ |+|++++++++.  .+..+.+|+..+++.+..+..
T Consensus        73 ~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  147 (355)
T d2bbkh_          73 RGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV  147 (355)
T ss_dssp             EEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             ccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEec
Confidence              347899999999998877665332       223456 999999887764  567899999999988776654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.03  E-value=7.6e-09  Score=69.07  Aligned_cols=86  Identities=8%  Similarity=0.045  Sum_probs=62.1

Q ss_pred             EEEecCCCCEEEEec-C--------CCeEEEEeCCCccceeeeeecccceeEE-EcCCCC-E-EEEecCCCeEEEEeCCC
Q psy1859          73 AISFHQEYNTFATGG-S--------DGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYN-T-FATGGSDGYVNIWDGFN  140 (162)
Q Consensus        73 ~~~~~p~~~~l~~~~-~--------d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~-~-l~~~~~d~~i~iwd~~~  140 (162)
                      .++++|++..+.... .        ...|.+||..+++.+..+.. ...+..+ |+|||+ + ++++..++.|++||..+
T Consensus       268 ~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t  346 (368)
T d1mdah_         268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             eEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence            466777775544332 1        13588999999988877763 4567788 999997 3 45667889999999999


Q ss_pred             ceeeeeeccCCCceeEEEec
Q psy1859         141 KKRLCQFHRYDTGITSLCFS  160 (162)
Q Consensus       141 ~~~~~~~~~~~~~v~~v~~~  160 (162)
                      ++.+..+.... ....|++-
T Consensus       347 gk~~~~i~~g~-~P~~l~~~  365 (368)
T d1mdah_         347 DQDQSSVELDK-GPESLSVQ  365 (368)
T ss_dssp             CEEEEECCCCS-CCCEEECC
T ss_pred             CCEEEEEECCC-CCCEEEEe
Confidence            99999887543 35566553

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.88  E-value=4.5e-09  Score=72.42  Aligned_cols=89  Identities=6%  Similarity=0.063  Sum_probs=70.0

Q ss_pred             eEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeee-----ecccceeEE-EcCCCCEEEEecC---------CCeEEE
Q psy1859          71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH-----RYDTGITSL-FHQEYNTFATGGS---------DGYVNI  135 (162)
Q Consensus        71 v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~-----~~~~~v~~~-~~~~~~~l~~~~~---------d~~i~i  135 (162)
                      -..+.|.+++.++..  .++.+.+||+.+++....+.     .+...+.++ |||||++|+.++.         ++.+.+
T Consensus        19 ~~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          19 LYSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence            346889998876654  47789999999987655443     345678899 9999999988753         567899


Q ss_pred             EeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         136 WDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       136 wd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      ||+.+++. ..+..+...+..+.||||
T Consensus        97 ~d~~~~~~-~~l~~~~~~~~~~~~SPD  122 (470)
T d2bgra1          97 YDLNKRQL-ITEERIPNNTQWVTWSPV  122 (470)
T ss_dssp             EETTTTEE-CCSSCCCTTEEEEEECSS
T ss_pred             EECCCCcc-cccccCCccccccccccC
Confidence            99998874 457778889999999997

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.86  E-value=2.8e-07  Score=61.58  Aligned_cols=142  Identities=4%  Similarity=-0.124  Sum_probs=81.9

Q ss_pred             ccccEEEEEEeeCCCeEEEEcC-CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEE-EEecCC
Q psy1859          12 LKFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF-ATGGSD   89 (162)
Q Consensus        12 ~~~~~~~i~~~~~~~~l~~~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~d   89 (162)
                      ...|+.++.++|+|++++++.. ...|.+|.++... ............       .......++|+|+++++ ++...+
T Consensus       143 ~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g-~~~~~~~~~~~~-------~g~gPr~i~f~pdg~~~yv~~e~~  214 (365)
T d1jofa_         143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASG-EVELVGSVDAPD-------PGDHPRWVAMHPTGNYLYALMEAG  214 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS-CEEEEEEEECSS-------TTCCEEEEEECTTSSEEEEEETTT
T ss_pred             CCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCC-ceeeccceeecC-------CCCceEEEEECCCCceEEEeccCC
Confidence            3456789999999998887754 3456666555432 111111111100       11257899999999766 555678


Q ss_pred             CeEEEEeCCCccceeeee-------------------ecccceeEE-EcCCCCEEEEecC------CCeEEEEeCCCcee
Q psy1859          90 GYVNIWDGFNKKRLCQFH-------------------RYDTGITSL-FHQEYNTFATGGS------DGYVNIWDGFNKKR  143 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~-------------------~~~~~v~~~-~~~~~~~l~~~~~------d~~i~iwd~~~~~~  143 (162)
                      +.|.+|++...+......                   ........+ ++|+|++|+++..      ...|..|++.....
T Consensus       215 ~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~  294 (365)
T d1jofa_         215 NRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS  294 (365)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred             CEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCc
Confidence            999999987654321111                   011234567 9999999988742      22477777653221


Q ss_pred             ee------eeccCCCceeEEEecC
Q psy1859         144 LC------QFHRYDTGITSLCFSY  161 (162)
Q Consensus       144 ~~------~~~~~~~~v~~v~~~p  161 (162)
                      +.      ..........+++|+|
T Consensus       295 ~~~~~~~~~~~~~G~~p~~i~~~p  318 (365)
T d1jofa_         295 IEKQLFLSPTPTSGGHSNAVSPCP  318 (365)
T ss_dssp             EEEEEEEEECSSCCTTCCCEEECT
T ss_pred             eeeEeEeeEEEcCCCCccEEEecC
Confidence            11      1111233456677776

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=2.3e-06  Score=54.12  Aligned_cols=131  Identities=11%  Similarity=-0.009  Sum_probs=77.7

Q ss_pred             EEEEeeCCCeEE-EEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC-CCeEEEE
Q psy1859          18 CIKCFPNKQGYV-LSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-DGYVNIW   95 (162)
Q Consensus        18 ~i~~~~~~~~l~-~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~v~~w   95 (162)
                      ...++++++.++ +...++...+|..+..........   ...         .......|+|++..++..+. .+...+|
T Consensus       131 ~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~---~~~---------~~~~~~~~spdg~~~~~~~~~~~~~~i~  198 (269)
T d2hqsa1         131 EPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT---WEG---------SQNQDADVSSDGKFMVMVSSNGGQQHIA  198 (269)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC---CSS---------SEEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred             ccccccccccceecccccCCceEeeeecccccceeee---ccc---------ccccccccccccceeEEEeecCCceeee
Confidence            345666655444 444556666666665442122111   111         14667889999987776654 3444444


Q ss_pred             eCCCccceeeeeecccceeEE-EcCCCCEEEEecC---CCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          96 DGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS---DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        96 d~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      ..................... |+|||++|+..+.   ...|.++++..+.. ..+....+.+...+|||
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         199 KQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECC
T ss_pred             EeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCC
Confidence            433322222233344555667 9999998876543   34789999976654 44555677788999998

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.60  E-value=3.2e-06  Score=53.63  Aligned_cols=133  Identities=7%  Similarity=-0.036  Sum_probs=82.5

Q ss_pred             EEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEE
Q psy1859          16 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW   95 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~w   95 (162)
                      ...++++++++.+++....+.+++  ++...  ...........          ...++++.++++++++-..+..+..+
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~--~~~~~--~~~~~~~~~~~----------~p~~iavd~~g~i~v~d~~~~~~~~~  124 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTL--AAGSN--NQTVLPFDGLN----------YPEGLAVDTQGAVYVADRGNNRVVKL  124 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEE--CTTCS--CCEECCCCSCC----------SEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             ceEEEEcCCCCEEEeeeeeceeee--eeecc--ceeeeeeeeee----------ecccccccccceeEeecccccccccc
Confidence            356788888887766555555554  44333  22222222211          47889999999988887777888888


Q ss_pred             eCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          96 DGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        96 d~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +...................+ ++++++++++...++.|..+|.............-.....|++.++
T Consensus       125 ~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~  192 (260)
T d1rwia_         125 AAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA  192 (260)
T ss_dssp             CTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTT
T ss_pred             ccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeee
Confidence            776533222111222345678 8999998888888889999998654433222233344567777653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.55  E-value=1.1e-05  Score=52.14  Aligned_cols=142  Identities=12%  Similarity=0.033  Sum_probs=80.5

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS   88 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~   88 (162)
                      ..........+++.++|+.+++...++.+..+..+...............          .....+++.++++++++.+.
T Consensus        63 ~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~n~i~~~~~g~~~v~~~~  132 (302)
T d2p4oa1          63 HATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDA----------IFLNGITPLSDTQYLTADSY  132 (302)
T ss_dssp             EEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTC----------SCEEEEEESSSSEEEEEETT
T ss_pred             EEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCc----------cccceeEEccCCCEEeeccc
Confidence            34455677889999999988888777777776555433111111111110          13556666666666666555


Q ss_pred             CCeEEEEeCCCcc---------------------------------------------------ceee--eeecccceeE
Q psy1859          89 DGYVNIWDGFNKK---------------------------------------------------RLCQ--FHRYDTGITS  115 (162)
Q Consensus        89 d~~v~~wd~~~~~---------------------------------------------------~~~~--~~~~~~~v~~  115 (162)
                      ++.+..+|...+.                                                   ....  ..........
T Consensus       133 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdg  212 (302)
T d2p4oa1         133 RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDD  212 (302)
T ss_dssp             TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSS
T ss_pred             cccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcc
Confidence            5555555544321                                                   0000  0011122334


Q ss_pred             E-EcCCCCEEEEecCCCeEEEEeCCCcee-eeeeccCCCceeEEEec
Q psy1859         116 L-FHQEYNTFATGGSDGYVNIWDGFNKKR-LCQFHRYDTGITSLCFS  160 (162)
Q Consensus       116 ~-~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~v~~~  160 (162)
                      + ++++|.++++...++.|..++...... +......-..+++++|.
T Consensus       213 ia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg  259 (302)
T d2p4oa1         213 FAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFG  259 (302)
T ss_dssp             EEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEEC
T ss_pred             eEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEc
Confidence            6 888999888888888999888754321 22233333467889993

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.52  E-value=6.6e-06  Score=53.26  Aligned_cols=112  Identities=9%  Similarity=0.057  Sum_probs=79.4

Q ss_pred             EEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEE
Q psy1859          16 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW   95 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~w   95 (162)
                      +..+++.|||+.+++...+++|..  ++...  ....+  ....         ..+.+++|+|+|+++++...++.+..+
T Consensus        30 ~e~iAv~pdG~l~vt~~~~~~I~~--i~p~g--~~~~~--~~~~---------~~~~gla~~~dG~l~v~~~~~~~~~~~   94 (302)
T d2p4oa1          30 LENLASAPDGTIFVTNHEVGEIVS--ITPDG--NQQIH--ATVE---------GKVSGLAFTSNGDLVATGWNADSIPVV   94 (302)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEE--ECTTC--CEEEE--EECS---------SEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             cCCEEECCCCCEEEEeCCCCEEEE--EeCCC--CEEEE--EcCC---------CCcceEEEcCCCCeEEEecCCceEEEE
Confidence            567999999999888888887655  66543  11111  1111         258899999999999998888888888


Q ss_pred             eCCCccc-eeeee--ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCce
Q psy1859          96 DGFNKKR-LCQFH--RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKK  142 (162)
Q Consensus        96 d~~~~~~-~~~~~--~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~  142 (162)
                      +...... ...+.  ........+ +.++++++++-..++.+..+|...+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~  145 (302)
T d2p4oa1          95 SLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS  145 (302)
T ss_dssp             EEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred             EecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCc
Confidence            7654322 22221  123456677 99999999998889999999987765

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.50  E-value=3.5e-05  Score=51.23  Aligned_cols=127  Identities=9%  Similarity=0.073  Sum_probs=76.6

Q ss_pred             ccEEEEEEeeCCCeEEEE-cCCCcEEEEEecCCcccceeeeeeeeeeecc--------CcccceeceEEEEecCCCCEEE
Q psy1859          14 FQTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE--------DGIEKIYPVNAISFHQEYNTFA   84 (162)
Q Consensus        14 ~~~~~i~~~~~~~~l~~~-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~p~~~~l~   84 (162)
                      ...+.++|+|+++++.+. ..+++|.+|+++...  ..............        ...........+.++|+|++++
T Consensus       193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ly  270 (365)
T d1jofa_         193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT--HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF  270 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT--CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred             CceEEEEECCCCceEEEeccCCCEEEEEEecCCC--ceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEE
Confidence            455779999999987554 567889998877654  22222211111000        1112223466899999998887


Q ss_pred             EecC------CCeEEEEeCCCccceeee------eecccceeEE-EcC-CCCEEEEec-CCCeEEEEeCCCce
Q psy1859          85 TGGS------DGYVNIWDGFNKKRLCQF------HRYDTGITSL-FHQ-EYNTFATGG-SDGYVNIWDGFNKK  142 (162)
Q Consensus        85 ~~~~------d~~v~~wd~~~~~~~~~~------~~~~~~v~~~-~~~-~~~~l~~~~-~d~~i~iwd~~~~~  142 (162)
                      ++.+      ...|..|++.....+...      .........+ ++| +|++|+++. .++.|.+|++....
T Consensus       271 vsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            7642      234777777653222211      1123455678 898 899887775 67899999875443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.50  E-value=2e-05  Score=49.84  Aligned_cols=134  Identities=10%  Similarity=0.015  Sum_probs=82.0

Q ss_pred             EEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEE
Q psy1859          16 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW   95 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~w   95 (162)
                      ...+++.++++.+++-.....+..  ++.... ...........          ...+++++|+++++++...++.|..+
T Consensus       100 p~~iavd~~g~i~v~d~~~~~~~~--~~~~~~-~~~~~~~~~~~----------~p~~i~~~~~g~~~v~~~~~~~i~~~  166 (260)
T d1rwia_         100 PEGLAVDTQGAVYVADRGNNRVVK--LAAGSK-TQTVLPFTGLN----------DPDGVAVDNSGNVYVTDTDNNRVVKL  166 (260)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEE--ECTTCS-SCEECCCCSCC----------SCCEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             cccccccccceeEeeccccccccc--cccccc-eeeeeeecccC----------CcceeeecCCCCEeeecccccccccc
Confidence            467888888877666554454444  443321 11111111111          35789999999998888889999999


Q ss_pred             eCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          96 DGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        96 d~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      |.............-.....+ ++++|.++++....+.|..++.............-....+|++++|
T Consensus       167 d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~  234 (260)
T d1rwia_         167 EAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD  234 (260)
T ss_dssp             CTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTT
T ss_pred             ccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCC
Confidence            987543322222333456778 9999998888888888888886543321111122235677887764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=8e-06  Score=51.55  Aligned_cols=48  Identities=6%  Similarity=-0.150  Sum_probs=30.9

Q ss_pred             eeEE-EcCCCCEEEEecCCC---eEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         113 ITSL-FHQEYNTFATGGSDG---YVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       113 v~~~-~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .... |+|+++.++..+.++   .+.+.+...+.. . ............|+||
T Consensus       173 ~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~-~~~~~~~~~~p~~SPD  224 (269)
T d2hqsa1         173 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-Q-VLSSTFLDETPSLAPN  224 (269)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-E-ECCCSSSCEEEEECTT
T ss_pred             ccccccccccceeEEEeecCCceeeeEeecccccc-e-EeecCccccceEECCC
Confidence            3345 999999888776543   455556655443 2 3334556778899997

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.48  E-value=1.5e-05  Score=51.96  Aligned_cols=69  Identities=10%  Similarity=0.133  Sum_probs=56.4

Q ss_pred             eEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCC-EEEEecCCCeEEEEeCC
Q psy1859          71 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYN-TFATGGSDGYVNIWDGF  139 (162)
Q Consensus        71 v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~iwd~~  139 (162)
                      ...+++.++|+++++....+.|.+||.+.++....+.......+++ |.|+++ ++++...++.|...++.
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            5689999999999988889999999998887776666555677888 999997 55666778888888874

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=4.8e-07  Score=62.38  Aligned_cols=117  Identities=5%  Similarity=-0.048  Sum_probs=73.4

Q ss_pred             EEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEec---------CC
Q psy1859          19 IKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG---------SD   89 (162)
Q Consensus        19 i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~---------~d   89 (162)
                      ..|.+++.++. -..+|.+.+  ++..++....+..  ....      ....+....|||+++.++...         ..
T Consensus        22 ~~W~~~~~~~~-~~~~g~i~~--~~~~~~~~~~l~~--~~~~------~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~   90 (465)
T d1xfda1          22 AKWISDTEFIY-REQKGTVRL--WNVETNTSTVLIE--GKKI------ESLRAIRYEISPDREYALFSYNVEPIYQHSYT   90 (465)
T ss_dssp             CCBSSSSCBCC-CCSSSCEEE--BCGGGCCCEEEEC--TTTT------TTTTCSEEEECTTSSEEEEEESCCCCSSSCCC
T ss_pred             CEEeCCCcEEE-EeCCCcEEE--EECCCCCEEEEEc--Cccc------cccccceeEECCCCCeEEEEEcccceeEeecc
Confidence            46888877654 356677777  6655432333322  1111      111467788999998776653         35


Q ss_pred             CeEEEEeCCCccceeee--eecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeee
Q psy1859          90 GYVNIWDGFNKKRLCQF--HRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQF  147 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~--~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  147 (162)
                      +.+.++|+.++......  ......+... |||||+.++... ++.|.+.+..++..++..
T Consensus        91 ~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt  150 (465)
T d1xfda1          91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVV  150 (465)
T ss_dssp             SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEE
T ss_pred             ccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEe
Confidence            78899999987643322  2223344456 999999998875 567888888776654433

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.36  E-value=6e-05  Score=49.04  Aligned_cols=92  Identities=9%  Similarity=0.089  Sum_probs=65.4

Q ss_pred             eEEEEecCCCC-----EEEEecCCCeEEEEeCCCcccee------eeee-cccceeEE-EcCCCCEEEEecCCCeEEEEe
Q psy1859          71 VNAISFHQEYN-----TFATGGSDGYVNIWDGFNKKRLC------QFHR-YDTGITSL-FHQEYNTFATGGSDGYVNIWD  137 (162)
Q Consensus        71 v~~~~~~p~~~-----~l~~~~~d~~v~~wd~~~~~~~~------~~~~-~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd  137 (162)
                      ...++|+|++.     ++++-+..+.|..||+.....+.      .+.. .....-.+ +.++|++.++....+.|.+||
T Consensus       174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~d  253 (314)
T d1pjxa_         174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG  253 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             eeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEe
Confidence            56889988764     56666788999999876432221      1111 11234467 899999888887889999999


Q ss_pred             CCCceeeeeeccCCCceeEEEecCC
Q psy1859         138 GFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       138 ~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      .+.++.+..+..+...+++++|.||
T Consensus       254 p~~g~~~~~i~~p~~~~t~~afg~d  278 (314)
T d1pjxa_         254 PDGGQPKMRIRCPFEKPSNLHFKPQ  278 (314)
T ss_dssp             TTCBSCSEEEECSSSCEEEEEECTT
T ss_pred             CCCCEEEEEEECCCCCEEEEEEeCC
Confidence            9887766666666667899999885

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.35  E-value=7.1e-05  Score=47.72  Aligned_cols=134  Identities=10%  Similarity=0.125  Sum_probs=87.0

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEE
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI   94 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~   94 (162)
                      ....+++.++++.+++....+.+.+  ++...   +.+..+....       +......+++.++++++++....+.|++
T Consensus       115 ~p~~~avd~~G~i~v~~~~~~~~~~--~~~~g---~~~~~~g~~~-------~~~~~~~i~~d~~g~i~v~d~~~~~V~~  182 (279)
T d1q7fa_         115 HPRGVTVDNKGRIIVVECKVMRVII--FDQNG---NVLHKFGCSK-------HLEFPNGVVVNDKQEIFISDNRAHCVKV  182 (279)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEE--ECTTS---CEEEEEECTT-------TCSSEEEEEECSSSEEEEEEGGGTEEEE
T ss_pred             ccceeccccCCcEEEEeeccceeeE--eccCC---ceeecccccc-------cccccceeeeccceeEEeeeccccceee
Confidence            3456777777777766665565555  55432   2222221111       2235778899999999999999999999


Q ss_pred             EeCCCccceeeee--ecccceeEE-EcCCCCEEEEec-CCCeEEEEeCCCceeeeeeccC--CCceeEEEecCC
Q psy1859          95 WDGFNKKRLCQFH--RYDTGITSL-FHQEYNTFATGG-SDGYVNIWDGFNKKRLCQFHRY--DTGITSLCFSYD  162 (162)
Q Consensus        95 wd~~~~~~~~~~~--~~~~~v~~~-~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~--~~~v~~v~~~pd  162 (162)
                      ||.. ++.+..+.  +.......+ ++++|+++++-. .+..|.+++. +++.+.++...  ......|++.||
T Consensus       183 ~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~d  254 (279)
T d1q7fa_         183 FNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD  254 (279)
T ss_dssp             EETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred             eecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCC
Confidence            9975 55555553  223446778 999999777654 3457999985 67766665422  235678888775

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.29  E-value=1.3e-05  Score=54.57  Aligned_cols=95  Identities=8%  Similarity=-0.140  Sum_probs=65.8

Q ss_pred             ceeceEEEEecCCCCEE-EEecCCCeEEEEeCCCccceeeeee-cccceeEE-EcCCCC--EEEEecCCC----------
Q psy1859          67 KIYPVNAISFHQEYNTF-ATGGSDGYVNIWDGFNKKRLCQFHR-YDTGITSL-FHQEYN--TFATGGSDG----------  131 (162)
Q Consensus        67 ~~~~v~~~~~~p~~~~l-~~~~~d~~v~~wd~~~~~~~~~~~~-~~~~v~~~-~~~~~~--~l~~~~~d~----------  131 (162)
                      |.........+|||+++ ++...++.|.++|+.+.+....+.. .......+ |+|+|+  |++..+.+.          
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~  149 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF  149 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccc
Confidence            44456667778999766 5556889999999999887776653 45678888 999998  444444332          


Q ss_pred             -------eEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859         132 -------YVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus       132 -------~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                             .+..+|..+.+...++... +.+..+.|+||
T Consensus       150 ~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spd  186 (441)
T d1qnia2         150 SLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYT  186 (441)
T ss_dssp             CGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSS
T ss_pred             ccccccceEEeecCccceeeEEEecC-CCccceEECCC
Confidence                   2356788777766665533 35677888876

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.25  E-value=1.2e-05  Score=54.75  Aligned_cols=102  Identities=6%  Similarity=-0.072  Sum_probs=61.4

Q ss_pred             cEEEEEEeeCCCeEEEE-cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCE-EEEecCCCe-
Q psy1859          15 QTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT-FATGGSDGY-   91 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~~~~~d~~-   91 (162)
                      +.......|||+++++. ..+..|.++  |..+.+...+..+..          ...+..++|+|+++. .+++..+.. 
T Consensus        73 ~~s~t~gtpDGr~lfV~d~~~~rVavI--Dl~t~k~~~ii~iP~----------g~gphgi~~spdg~t~YV~~~~~~~v  140 (441)
T d1qnia2          73 HISMTDGRYDGKYLFINDKANTRVARI--RLDIMKTDKITHIPN----------VQAIHGLRLQKVPKTNYVFCNAEFVI  140 (441)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEE--ETTTTEEEEEEECTT----------CCCEEEEEECCSSBCCEEEEEECSCE
T ss_pred             CcceecccCCCCEEEEEcCCCCEEEEE--ECCCCcEeeEEecCC----------CCCccceEEeccCCEEEEEeccCCcc
Confidence            34445568999988666 456778884  444422333322211          125889999999863 233332322 


Q ss_pred             -----------------EEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecC
Q psy1859          92 -----------------VNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS  129 (162)
Q Consensus        92 -----------------v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~  129 (162)
                                       +..+|..+.+....+.. .+....+ ++|+|+++++.+.
T Consensus       141 ~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~  195 (441)
T d1qnia2         141 PQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIV-DGNLDNTDADYTGKYATSTCY  195 (441)
T ss_dssp             ESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEES
T ss_pred             cccCcccccccccccceEEeecCccceeeEEEec-CCCccceEECCCCCEEEEEec
Confidence                             34477776666655543 3446677 9999998887764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.17  E-value=8.9e-05  Score=47.25  Aligned_cols=113  Identities=4%  Similarity=-0.028  Sum_probs=74.5

Q ss_pred             cEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC-CCeEE
Q psy1859          15 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-DGYVN   93 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~v~   93 (162)
                      ....+++.++++.+++....+.|.++  +...   +....+...       +......+|++.++|+++++-.. +..|.
T Consensus       158 ~~~~i~~d~~g~i~v~d~~~~~V~~~--d~~G---~~~~~~g~~-------g~~~~P~giavD~~G~i~Vad~~~~~~v~  225 (279)
T d1q7fa_         158 FPNGVVVNDKQEIFISDNRAHCVKVF--NYEG---QYLRQIGGE-------GITNYPIGVGINSNGEILIADNHNNFNLT  225 (279)
T ss_dssp             SEEEEEECSSSEEEEEEGGGTEEEEE--ETTC---CEEEEESCT-------TTSCSEEEEEECTTCCEEEEECSSSCEEE
T ss_pred             ccceeeeccceeEEeeeccccceeee--ecCC---ceeeeeccc-------ccccCCcccccccCCeEEEEECCCCcEEE
Confidence            34567788888877777777777774  4332   222222111       11124678999999998877554 55799


Q ss_pred             EEeCCCccceeeeeec--ccceeEE-EcCCCCEEEEecCCCeEEEEeCCCc
Q psy1859          94 IWDGFNKKRLCQFHRY--DTGITSL-FHQEYNTFATGGSDGYVNIWDGFNK  141 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~--~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~  141 (162)
                      +|+. +++.+..+...  ......+ +.|+|.+++ ++.+..|++|.....
T Consensus       226 ~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         226 IFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred             EECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence            9984 57766666432  2346777 999997655 457889999998654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.08  E-value=0.00036  Score=45.33  Aligned_cols=134  Identities=11%  Similarity=-0.005  Sum_probs=81.2

Q ss_pred             EEEEEEeeCCCeEEEEcCC----CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCE-EEEecCCC
Q psy1859          16 TRCIKCFPNKQGYVLSSIE----GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT-FATGGSDG   90 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~~~~~d~   90 (162)
                      ...+++.++|++.++....    ..-.+|.++........+.  ....          ....++|+|+++. +++-+..+
T Consensus       132 ~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~--~~~~----------~pnGia~s~dg~~lyvad~~~~  199 (319)
T d2dg1a1         132 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII--QNIS----------VANGIALSTDEKVLWVTETTAN  199 (319)
T ss_dssp             EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE--EEES----------SEEEEEECTTSSEEEEEEGGGT
T ss_pred             CcceeEEeccceeecccccccccCcceeEEEecccceeEEEe--eccc----------eeeeeeeccccceEEEecccCC
Confidence            4567788888766653221    1223444554321111111  1111          3678999999975 56667789


Q ss_pred             eEEEEeCCCc-cceeeee-------ecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeecc------CCCcee
Q psy1859          91 YVNIWDGFNK-KRLCQFH-------RYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR------YDTGIT  155 (162)
Q Consensus        91 ~v~~wd~~~~-~~~~~~~-------~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~v~  155 (162)
                      .|..|++... .......       ........+ +.++|++.++....+.|.++|. .++.+.++..      +...++
T Consensus       200 ~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~  278 (319)
T d2dg1a1         200 RLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRST  278 (319)
T ss_dssp             EEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCC
T ss_pred             ceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceee
Confidence            9999988642 2211111       111224467 8999998888888999999996 6877776643      233577


Q ss_pred             EEEecCC
Q psy1859         156 SLCFSYD  162 (162)
Q Consensus       156 ~v~~~pd  162 (162)
                      +++|.|+
T Consensus       279 ~~~~~~~  285 (319)
T d2dg1a1         279 HPQFIPG  285 (319)
T ss_dssp             EEEECTT
T ss_pred             eEEEeCC
Confidence            8888763

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.9e-05  Score=54.26  Aligned_cols=102  Identities=5%  Similarity=-0.056  Sum_probs=61.6

Q ss_pred             cEEEEEEeeCCCeEEEEcC---------CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEE
Q psy1859          15 QTRCIKCFPNKQGYVLSSI---------EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFAT   85 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~~---------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~   85 (162)
                      .+....+|||+++++...+         .+.+.+  +|..++....+.......         ..+....|||+|+.++-
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i--~d~~~~~~~~l~~~~~~~---------~~l~~~~wSPDG~~iaf  130 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL--SKIPHGDPQSLDPPEVSN---------AKLQYAGWGPKGQQLIF  130 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE--EESSSCCCEECCCTTCCS---------CCCSBCCBCSSTTCEEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEE--EEccCCceeeccCccCCc---------cccceeeeccCCceEEE
Confidence            3456679999999887643         344445  555442233222111111         14567889999988876


Q ss_pred             ecCCCeEEEEeCCCccceeeeee-ccc-----------------ceeEE-EcCCCCEEEEec
Q psy1859          86 GGSDGYVNIWDGFNKKRLCQFHR-YDT-----------------GITSL-FHQEYNTFATGG  128 (162)
Q Consensus        86 ~~~d~~v~~wd~~~~~~~~~~~~-~~~-----------------~v~~~-~~~~~~~l~~~~  128 (162)
                      .. ++.|.+.+...+..++.... ...                 .-..+ |||||++|+...
T Consensus       131 v~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         131 IF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             EE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             Ee-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            64 66788888876655443321 111                 12466 999999998864

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.94  E-value=0.00016  Score=45.49  Aligned_cols=108  Identities=8%  Similarity=-0.058  Sum_probs=62.4

Q ss_pred             EEeeC--CCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC-C-----Ce
Q psy1859          20 KCFPN--KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-D-----GY   91 (162)
Q Consensus        20 ~~~~~--~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d-----~~   91 (162)
                      ..+|+  |+.++..+. +.  ||.++...+..+.+   ..+..         .+...+|||+|+.|+-... +     ..
T Consensus         5 ~~sPdi~G~~v~f~~~-~d--l~~~d~~~g~~~~L---t~~~~---------~~~~p~~SPDG~~iaf~~~~~~~~~~~~   69 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DD--LWEHDLKSGSTRKI---VSNLG---------VINNARFFPDGRKIAIRVMRGSSLNTAD   69 (281)
T ss_dssp             CEEEEEETTEEEEEET-TE--EEEEETTTCCEEEE---ECSSS---------EEEEEEECTTSSEEEEEEEESTTCCEEE
T ss_pred             ccCCCCCCCEEEEEeC-Cc--EEEEECCCCCEEEE---ecCCC---------cccCEEECCCCCEEEEEEeeCCCCCceE
Confidence            35788  998887544 44  55566655323322   22221         4778999999988875432 1     34


Q ss_pred             EEEEeCCCccceeeeee------cccceeEE-EcCCCCEEEEecCC------CeEEEEeCCCce
Q psy1859          92 VNIWDGFNKKRLCQFHR------YDTGITSL-FHQEYNTFATGGSD------GYVNIWDGFNKK  142 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~------~~~~v~~~-~~~~~~~l~~~~~d------~~i~iwd~~~~~  142 (162)
                      |.+++...++..+....      ........ |+|+|+.++.....      ..+...+...+.
T Consensus        70 i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~  133 (281)
T d1k32a2          70 LYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN  133 (281)
T ss_dssp             EEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE
T ss_pred             EEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce
Confidence            77778777654332111      11234456 99999988876332      234555554443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.79  E-value=0.0014  Score=42.43  Aligned_cols=133  Identities=14%  Similarity=0.076  Sum_probs=73.5

Q ss_pred             EEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC----CCe
Q psy1859          16 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS----DGY   91 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~----d~~   91 (162)
                      ...++|.++|+.+++-...+.|..  +++..  ......+....         .....++++++|+++++...    .+.
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~r--i~p~g--~~~~~~~~~~~---------~~p~gla~~~dG~l~va~~~~~~~~~~  108 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFK--INPET--KEIKRPFVSHK---------ANPAAIKIHKDGRLFVCYLGDFKSTGG  108 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEE--ECTTT--CCEEEEEECSS---------SSEEEEEECTTSCEEEEECTTSSSCCE
T ss_pred             cEeCEECCCCCEEEEECCCCEEEE--EECCC--CeEEEEEeCCC---------CCeeEEEECCCCCEEEEecCCCcccee
Confidence            467889999987666666676655  66544  21111111111         14678999999998887543    344


Q ss_pred             EEEEeCCCccceeeeee--cccceeEE-EcCCCCEEEEecC------CCeEEEEeCCCceeeeeeccCCCceeEEEecCC
Q psy1859          92 VNIWDGFNKKRLCQFHR--YDTGITSL-FHQEYNTFATGGS------DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  162 (162)
Q Consensus        92 v~~wd~~~~~~~~~~~~--~~~~v~~~-~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~pd  162 (162)
                      +...+............  .......+ +.++|++.++...      .+.+..++...+. +..+...-...+.++|+||
T Consensus       109 i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~d  187 (319)
T d2dg1a1         109 IFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTD  187 (319)
T ss_dssp             EEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTT
T ss_pred             EEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccc
Confidence            55556554433322221  12335667 9999987766432      2335555553332 2222222224567888775

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.76  E-value=0.00014  Score=45.75  Aligned_cols=86  Identities=9%  Similarity=-0.123  Sum_probs=55.5

Q ss_pred             EecCC--CCEEEEecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecC-C-----CeEEEEeCCCceeee
Q psy1859          75 SFHQE--YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGS-D-----GYVNIWDGFNKKRLC  145 (162)
Q Consensus        75 ~~~p~--~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~-d-----~~i~iwd~~~~~~~~  145 (162)
                      ..+|+  |+.++-.+ ++.|++.|+..++. +.+.......... |||||+.|+.... +     ..|.+++..+++..+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            34677  87776553 56788899987765 4455556667777 9999998886532 1     247788887776544


Q ss_pred             eecc------CCCceeEEEecCC
Q psy1859         146 QFHR------YDTGITSLCFSYD  162 (162)
Q Consensus       146 ~~~~------~~~~v~~v~~~pd  162 (162)
                      ....      .........|+||
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spd  105 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPD  105 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTT
T ss_pred             eeecCCCccCccccccccccCCC
Confidence            2211      1123456677775

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.70  E-value=0.0019  Score=41.34  Aligned_cols=90  Identities=11%  Similarity=0.073  Sum_probs=64.5

Q ss_pred             ceEEEEecCCCC-EEEEecCCCeEEEEeCCCcc--c---eee---eeecccceeEE-EcCCCCEEEEecCCCeEEEEeCC
Q psy1859          70 PVNAISFHQEYN-TFATGGSDGYVNIWDGFNKK--R---LCQ---FHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGF  139 (162)
Q Consensus        70 ~v~~~~~~p~~~-~l~~~~~d~~v~~wd~~~~~--~---~~~---~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~  139 (162)
                      ....++|+++++ ++++-+..+.|..+++....  .   ...   .....+....+ +..+|.+.++.-..+.|..||. 
T Consensus       149 ~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-  227 (295)
T d2ghsa1         149 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-  227 (295)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-
T ss_pred             CcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-
Confidence            367899999996 45566778899998875321  1   111   11223445667 8999998887777889999996 


Q ss_pred             CceeeeeeccCCCceeEEEec
Q psy1859         140 NKKRLCQFHRYDTGITSLCFS  160 (162)
Q Consensus       140 ~~~~~~~~~~~~~~v~~v~~~  160 (162)
                      .++.+..+......+++++|-
T Consensus       228 ~G~~~~~i~lP~~~~T~~~FG  248 (295)
T d2ghsa1         228 DGNHIARYEVPGKQTTCPAFI  248 (295)
T ss_dssp             TCCEEEEEECSCSBEEEEEEE
T ss_pred             CCcEeeEecCCCCceEEEEEe
Confidence            678888887666679999994

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.13  E-value=0.012  Score=37.55  Aligned_cols=103  Identities=12%  Similarity=0.071  Sum_probs=65.8

Q ss_pred             EEEEEeeCCCeEEEE-cCCCcEEEEEecCCccccee-eeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEE
Q psy1859          17 RCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKM-KYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI   94 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~-~~~g~i~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~   94 (162)
                      ..++|+++++.++.+ +..+.|..+++|........ ...+....      +.......+++..+|++.++.-..+.|..
T Consensus       151 Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~------~~~g~pdG~~vD~~GnlWva~~~~g~V~~  224 (295)
T d2ghsa1         151 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST------GIKGGMDGSVCDAEGHIWNARWGEGAVDR  224 (295)
T ss_dssp             EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT------TSSSEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred             ceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccC------cccccccceEEcCCCCEEeeeeCCCceEE
Confidence            457899988866544 56677777777654311110 11100000      01124678899999999888878899999


Q ss_pred             EeCCCccceeeeeecccceeEE-Ec-CCCCEEEE
Q psy1859          95 WDGFNKKRLCQFHRYDTGITSL-FH-QEYNTFAT  126 (162)
Q Consensus        95 wd~~~~~~~~~~~~~~~~v~~~-~~-~~~~~l~~  126 (162)
                      ||. +++.+..+......++++ |- |+.+.|+.
T Consensus       225 ~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         225 YDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             ECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEE
T ss_pred             ecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEE
Confidence            995 578888877655668888 75 56665543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.98  E-value=0.011  Score=38.71  Aligned_cols=111  Identities=16%  Similarity=0.139  Sum_probs=66.1

Q ss_pred             EeeCCCeEEEEcCC-----C------cEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC
Q psy1859          21 CFPNKQGYVLSSIE-----G------RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD   89 (162)
Q Consensus        21 ~~~~~~~l~~~~~~-----g------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d   89 (162)
                      ...+++.++.|+.+     +      .+.+  ||+.++............        .......++.+++.+++.|+.+
T Consensus        27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~--yd~~t~~w~~~~~~~~~~--------~~~~~~~~~~~~g~i~v~Gg~~   96 (387)
T d1k3ia3          27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSS--WDPSTGIVSDRTVTVTKH--------DMFCPGISMDGNGQIVVTGGND   96 (387)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEE--ECTTTCCBCCCEEEECSC--------CCSSCEEEECTTSCEEEECSSS
T ss_pred             EeeCCEEEEEEeecCcccCCCCCceeEEEE--EECCCCcEeecCCCCCCc--------ccceeEEEEecCCcEEEeecCC
Confidence            34578888877642     1      1344  666553343322222111        1123456788999999988755


Q ss_pred             -CeEEEEeCCCcccee--eeeecccceeEE-EcCCCCEEEEecCC------CeEEEEeCCCce
Q psy1859          90 -GYVNIWDGFNKKRLC--QFHRYDTGITSL-FHQEYNTFATGGSD------GYVNIWDGFNKK  142 (162)
Q Consensus        90 -~~v~~wd~~~~~~~~--~~~~~~~~v~~~-~~~~~~~l~~~~~d------~~i~iwd~~~~~  142 (162)
                       ..+.+||..+.....  .+.... .-... ..+||++++.++.+      ..+.+||..+.+
T Consensus        97 ~~~~~~yd~~~~~w~~~~~~~~~r-~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          97 AKKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             TTCEEEEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             CcceeEecCccCcccccccccccc-cccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence             689999998764432  221111 22334 67799999998753      368999998765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.16  E-value=0.093  Score=35.32  Aligned_cols=28  Identities=11%  Similarity=0.099  Sum_probs=23.0

Q ss_pred             ceeEE-EcCCCCEEEEec-CCCeEEEEeCC
Q psy1859         112 GITSL-FHQEYNTFATGG-SDGYVNIWDGF  139 (162)
Q Consensus       112 ~v~~~-~~~~~~~l~~~~-~d~~i~iwd~~  139 (162)
                      ....+ .+|||+++++++ .+.++.|+|++
T Consensus       276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             CCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence            35567 999999987776 67899999986

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.56  E-value=0.037  Score=38.74  Aligned_cols=59  Identities=22%  Similarity=0.269  Sum_probs=43.9

Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeecc
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR  149 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  149 (162)
                      |.+.-+|+.+++...+..... +...- .+-.+.++++|+.|+.++.+|.++|+.+..++.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            567888888887776665332 22211 444678888999999999999999999988763

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.29  E-value=0.058  Score=37.68  Aligned_cols=59  Identities=17%  Similarity=0.121  Sum_probs=40.5

Q ss_pred             CeEEEEeCCCccceeeeeecccceeEEEcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      |.|.-+|+.+++.+.+.............-.+.++++++.|+.++.+|.++|+.+..+.
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence            46777788887766555422111111122256788889999999999999999988875

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.07  E-value=0.27  Score=33.07  Aligned_cols=106  Identities=8%  Similarity=-0.049  Sum_probs=60.8

Q ss_pred             EEEEEeeCCCeEEEE-cCCCcEEEEEecCCccc----ceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCe
Q psy1859          17 RCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEM----QKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY   91 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~-~~~g~i~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~   91 (162)
                      ..+..+|||++++++ ..+.++.|+++..-...    ......+.+...      ..-....-+|..+|+-..+---|.+
T Consensus       278 HGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e------lglgPLht~fd~~g~aytslfids~  351 (459)
T d1fwxa2         278 HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE------LGLGPLHTAFDGRGNAYTSLFLDSQ  351 (459)
T ss_dssp             CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB------CCSCEEEEEECTTSEEEEEETTTTE
T ss_pred             CceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc------cCcCccccccCCCceEEEEeeccce
Confidence            357899999998766 55789999666311100    000000000000      1113456778888877777789999


Q ss_pred             EEEEeCCCc----------cceeeeeecccce-eEE-----EcCCCCEEEEec
Q psy1859          92 VNIWDGFNK----------KRLCQFHRYDTGI-TSL-----FHQEYNTFATGG  128 (162)
Q Consensus        92 v~~wd~~~~----------~~~~~~~~~~~~v-~~~-----~~~~~~~l~~~~  128 (162)
                      |.-|++...          ..+.++..|=.+- ...     ..|+|++|++..
T Consensus       352 v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         352 VVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             EEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             EEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence            999998643          2233333221111 111     468999999986

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.77  E-value=0.14  Score=35.59  Aligned_cols=60  Identities=17%  Similarity=0.189  Sum_probs=42.0

Q ss_pred             CeEEEEeCCCccceeeeeecccceeEEEcCCCCEEEEecCCCeEEEEeCCCceeeeeecc
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR  149 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  149 (162)
                      |.+.-+|+.+++.+.+...........+.-.+.++++|+.|+.++.+|.++|+.+..+..
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence            567788888887766654321111111233567888999999999999999999888763

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.63  E-value=0.084  Score=36.84  Aligned_cols=59  Identities=15%  Similarity=0.201  Sum_probs=43.8

Q ss_pred             CeEEEEeCCCccceeeeeecccceeEEEcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSLFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      |.+.-||+.+++.+.+.+..........+-.+.++++|+.|+.++.+|.++|+.+..+.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence            46888999998887766543221111123367889999999999999999999988875

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.40  E-value=0.32  Score=34.08  Aligned_cols=68  Identities=15%  Similarity=0.213  Sum_probs=46.3

Q ss_pred             CEEEEecCCCeEEEEeCCCccceeeeeecccce-eEE-EcC--CCCEEEEecC------CCeEEEEeCCCceeeeeec
Q psy1859          81 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGI-TSL-FHQ--EYNTFATGGS------DGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        81 ~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v-~~~-~~~--~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~  148 (162)
                      .+++.++.|+.|.-.|.++++++..+....... ..+ -.|  .+..++.+..      .|.|+-+|+++|+.+.++.
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            468888999999999999999887764321111 111 122  2344555543      4899999999999988764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.96  E-value=0.08  Score=37.18  Aligned_cols=58  Identities=14%  Similarity=0.158  Sum_probs=41.8

Q ss_pred             CeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeeeeec
Q psy1859          90 GYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        90 ~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  148 (162)
                      |.|.-||+.+++.+...... .+...- ++-.|.++++|+.|+.++.+|.++|+.+..+.
T Consensus       453 G~l~A~D~~TG~~~W~~~~~-~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~  511 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCCceecccCCC-CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence            56778888888766554321 111111 34467888899999999999999999988875

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.96  E-value=0.5  Score=31.39  Aligned_cols=99  Identities=5%  Similarity=-0.010  Sum_probs=54.7

Q ss_pred             EEEEEeeCCCeEEEEc-CCC--cEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecC-----
Q psy1859          17 RCIKCFPNKQGYVLSS-IEG--RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-----   88 (162)
Q Consensus        17 ~~i~~~~~~~~l~~~~-~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-----   88 (162)
                      ...+++|++++++.+- .+|  ...|+.+|..+  .+.+-. .....         ....++|.+++..|+-...     
T Consensus       128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~t--g~~~~~-~i~~~---------~~~~~~W~~D~~~~~Y~~~~~~~~  195 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG--AKELPD-VLERV---------KFSCMAWTHDGKGMFYNAYPQQDG  195 (430)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTT--TEEEEE-EEEEE---------CSCCEEECTTSSEEEEEECCCCSS
T ss_pred             cceEecCCCCEEEEEeccccCchheeEEeccCc--ceeccc-ccccc---------cccceEEcCCCCEEEEEEeccccC
Confidence            4467899999988652 223  23344467665  222211 11111         2357899999977664332     


Q ss_pred             -----------CCeEEEEeCCCccc--eeeeeecc--cceeEE-EcCCCCEEEEe
Q psy1859          89 -----------DGYVNIWDGFNKKR--LCQFHRYD--TGITSL-FHQEYNTFATG  127 (162)
Q Consensus        89 -----------d~~v~~wd~~~~~~--~~~~~~~~--~~v~~~-~~~~~~~l~~~  127 (162)
                                 ...+..+.+.+...  ...+....  ..+..+ .++++++++..
T Consensus       196 ~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             cccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence                       23677888776432  22232222  234455 78899987654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.38  Score=29.83  Aligned_cols=138  Identities=9%  Similarity=-0.022  Sum_probs=70.3

Q ss_pred             cEEEEEEeeCCCeEEEEc-CCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCeE
Q psy1859          15 QTRCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYV   92 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v   92 (162)
                      .+..+.+.+..+.+.-+. ..+.|.-..++............. ...        ..+.++++.+.+ ++..+-...+.|
T Consensus        31 ~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~-~~~--------~~p~glAvD~~~~~lY~~d~~~~~I  101 (266)
T d1ijqa1          31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDI--------QAPDGLAVDWIHSNIYWTDSVLGTV  101 (266)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-SSC--------SCCCEEEEETTTTEEEEEETTTTEE
T ss_pred             ceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEe-CCC--------CCcceEEEeeccceEEEEecCCCEE
Confidence            345677877666665553 334444433332211011110101 110        136678887655 555566677899


Q ss_pred             EEEeCCCccceeeeeecccceeEE-EcCCCCEEEEec--CCCeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          93 NIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGG--SDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      .+.++........+.........+ ++|...+++...  ..+.|.-.++............-....++++.+
T Consensus       102 ~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~  173 (266)
T d1ijqa1         102 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL  173 (266)
T ss_dssp             EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEET
T ss_pred             EeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeec
Confidence            999987654444444444556778 888666665553  334566666643322222222223456666654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.88  E-value=0.16  Score=35.40  Aligned_cols=48  Identities=23%  Similarity=0.355  Sum_probs=34.2

Q ss_pred             CCCEEEEecCCCeEEEEeCCCccceeeeeeccccee-EE-EcCCCC-EEEE
Q psy1859          79 EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGIT-SL-FHQEYN-TFAT  126 (162)
Q Consensus        79 ~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~-~~-~~~~~~-~l~~  126 (162)
                      .+.++++|+.|+.++.+|.++|+.+.+++-...... -+ |..+|+ |++.
T Consensus       496 agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i  546 (582)
T d1flga_         496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence            456777899999999999999999988764322211 13 667885 4444

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.35  E-value=0.65  Score=30.80  Aligned_cols=71  Identities=8%  Similarity=-0.004  Sum_probs=46.2

Q ss_pred             ceEEEEecCCCCEEEEe-----cCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCC-------------
Q psy1859          70 PVNAISFHQEYNTFATG-----GSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSD-------------  130 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~-----~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d-------------  130 (162)
                      .+..+.++|++++++.+     +....++++|+.+++.+...- .......+ |.+|++.|+....+             
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            45677889999877743     223578999999987654221 11222456 99999977665322             


Q ss_pred             ---CeEEEEeCCCc
Q psy1859         131 ---GYVNIWDGFNK  141 (162)
Q Consensus       131 ---~~i~iwd~~~~  141 (162)
                         ..+..+.+.+.
T Consensus       205 ~~~~~v~~h~lgt~  218 (430)
T d1qfma1         205 NLHQKLYYHVLGTD  218 (430)
T ss_dssp             CCCCEEEEEETTSC
T ss_pred             CCcceEEEEECCCC
Confidence               25777777665

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.12  E-value=0.76  Score=30.88  Aligned_cols=65  Identities=12%  Similarity=0.147  Sum_probs=37.4

Q ss_pred             eccccccEEEEEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC
Q psy1859           9 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE   79 (162)
Q Consensus         9 ~~~~~~~~~~i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~   79 (162)
                      .+.+. +-.+|+|.|+++.|++--..|.|.+  ++..+...+.+..+.....   ...-......|+++|+
T Consensus        23 a~~L~-~P~~la~~pdg~llVter~~G~i~~--v~~~~g~~~~i~~~~~~~~---~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          23 LSNLN-KPHALLWGPDNQIWLTERATGKILR--VNPESGSVKTVFQVPEIVN---DADGQNGLLGFAFHPD   87 (450)
T ss_dssp             ECCCS-SEEEEEECTTSCEEEEETTTCEEEE--ECTTTCCEEEEEECTTCCC---CTTSSCSEEEEEECTT
T ss_pred             ECCCC-CceEEEEeCCCeEEEEEecCCEEEE--EECCCCcEeecccCCcccc---ccCCCCceeeEEeCCC
Confidence            34454 4569999999998887655788877  5544422333222211100   0011226789999996

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.54  Score=29.10  Aligned_cols=86  Identities=7%  Similarity=-0.111  Sum_probs=50.9

Q ss_pred             ceEEEEecCCCCE-EEEecCCCeEEEEeCCCccceeeeeecc--cceeEE-EcCCCCEEEEe-cCCCeEEEEeCCCceee
Q psy1859          70 PVNAISFHQEYNT-FATGGSDGYVNIWDGFNKKRLCQFHRYD--TGITSL-FHQEYNTFATG-GSDGYVNIWDGFNKKRL  144 (162)
Q Consensus        70 ~v~~~~~~p~~~~-l~~~~~d~~v~~wd~~~~~~~~~~~~~~--~~v~~~-~~~~~~~l~~~-~~d~~i~iwd~~~~~~~  144 (162)
                      ...++++.+.+.. ..+-...+.|...++.............  .....+ +.  +.+|..+ ..++.|...+..++...
T Consensus       165 ~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~  242 (266)
T d1ijqa1         165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV  242 (266)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             eeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcce
Confidence            3678999987754 4455677899999986543322222221  233445 33  3455554 46788888888887766


Q ss_pred             eeeccCCCceeEE
Q psy1859         145 CQFHRYDTGITSL  157 (162)
Q Consensus       145 ~~~~~~~~~v~~v  157 (162)
                      ..+......+.++
T Consensus       243 ~~~~~~~~~p~~i  255 (266)
T d1ijqa1         243 NLLAENLLSPEDM  255 (266)
T ss_dssp             EEEECSCSCCCCE
T ss_pred             EEEEcCCCCceEE
Confidence            5555443334443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.77  E-value=0.6  Score=28.84  Aligned_cols=92  Identities=7%  Similarity=-0.107  Sum_probs=57.3

Q ss_pred             ceEEEEecCCCCEEE-EecCCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEe-cCCCeEEEEeCCCceeeee
Q psy1859          70 PVNAISFHQEYNTFA-TGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATG-GSDGYVNIWDGFNKKRLCQ  146 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~-~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~  146 (162)
                      .+.+++|++..+.+. +-..++.|+..++........+...-..+..+ ++.-++.|..+ ...+.|.+.++........
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l  116 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL  116 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEE
Confidence            478899988765444 55677889988887654433333333456777 77655555544 5677999999865443222


Q ss_pred             eccCCCceeEEEecC
Q psy1859         147 FHRYDTGITSLCFSY  161 (162)
Q Consensus       147 ~~~~~~~v~~v~~~p  161 (162)
                      +...-..+..+++.|
T Consensus       117 ~~~~l~~p~~l~vdp  131 (263)
T d1npea_         117 FDTGLVNPRGIVTDP  131 (263)
T ss_dssp             ECSSCSSEEEEEEET
T ss_pred             ecccccCCcEEEEec
Confidence            222234567777765

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=92.11  E-value=0.88  Score=29.20  Aligned_cols=113  Identities=13%  Similarity=0.040  Sum_probs=64.4

Q ss_pred             EEEEeeCCCeEEEEcCC-CcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCC------C
Q psy1859          18 CIKCFPNKQGYVLSSIE-GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD------G   90 (162)
Q Consensus        18 ~i~~~~~~~~l~~~~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d------~   90 (162)
                      ..++.++++.++.|+.+ ..+.+  ||..+......-.+...+          .-...+..+++++++.++.+      .
T Consensus        80 ~~~~~~~g~i~v~Gg~~~~~~~~--yd~~~~~w~~~~~~~~~r----------~~~~~~~~~dG~v~v~GG~~~~~~~~~  147 (387)
T d1k3ia3          80 GISMDGNGQIVVTGGNDAKKTSL--YDSSSDSWIPGPDMQVAR----------GYQSSATMSDGRVFTIGGSWSGGVFEK  147 (387)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEE--EEGGGTEEEECCCCSSCC----------SSCEEEECTTSCEEEECCCCCSSSCCC
T ss_pred             EEEEecCCcEEEeecCCCcceeE--ecCccCcccccccccccc----------cccceeeecCCceeeeccccccccccc
Confidence            45677889988888665 56777  454442233322222111          23356667789998888753      4


Q ss_pred             eEEEEeCCCccceee--ee-------eccc-----ceeEE-EcCCCCEEEEecCCCeEEEEeCCCce
Q psy1859          91 YVNIWDGFNKKRLCQ--FH-------RYDT-----GITSL-FHQEYNTFATGGSDGYVNIWDGFNKK  142 (162)
Q Consensus        91 ~v~~wd~~~~~~~~~--~~-------~~~~-----~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~  142 (162)
                      .+.+||..+.+....  ..       .+..     ....+ .-++|+.++.+...+.+.+++..+..
T Consensus       148 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         148 NGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             CEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred             eeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCc
Confidence            688999887543211  10       0000     00111 23467777777777777788776654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.49  E-value=0.9  Score=28.02  Aligned_cols=133  Identities=8%  Similarity=-0.119  Sum_probs=70.4

Q ss_pred             EEEEEEeeCCCeEEEE-cCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCC-CEEEEecCCCeEE
Q psy1859          16 TRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVN   93 (162)
Q Consensus        16 ~~~i~~~~~~~~l~~~-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~v~   93 (162)
                      +..+++.+..+.+.-+ ...+.|....++...  .+.+.. .+.          ..+.++++..-+ ++..+-...+.|.
T Consensus        38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~--~~~v~~-~~~----------~~p~~iAvD~~~~~lY~~d~~~~~I~  104 (263)
T d1npea_          38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--PTTIIR-QDL----------GSPEGIALDHLGRTIFWTDSQLDRIE  104 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCC--CEEEEC-TTC----------CCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEEEEeCCCEEEEEECCCCeEEEEEcccCC--cEEEEE-ecc----------ccccEEEEeccCCeEEEeccCCCEEE
Confidence            4457788766666555 444666664444322  222221 111          146788887655 4555666778999


Q ss_pred             EEeCCCccceeeeeecccceeEE-EcCCCCEEEEecCC---CeEEEEeCCCceeeeeeccCCCceeEEEecC
Q psy1859          94 IWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATGGSD---GYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  161 (162)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~p  161 (162)
                      +.++........+...-.....+ ++|...+++.....   ..|.--++............-....++++.+
T Consensus       105 ~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~  176 (263)
T d1npea_         105 VAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA  176 (263)
T ss_dssp             EEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEET
T ss_pred             EEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEee
Confidence            99987544322222223456778 88877766655322   2344445543322222222223455666653

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=91.31  E-value=0.74  Score=31.86  Aligned_cols=69  Identities=19%  Similarity=0.173  Sum_probs=44.3

Q ss_pred             CCEEEEecCCCeEEEEeCCCccceeeeeecccc-eeEE-EcC--CCCEEEEecC------CCeEEEEeCCCceeeeeec
Q psy1859          80 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG-ITSL-FHQ--EYNTFATGGS------DGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        80 ~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~-v~~~-~~~--~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~  148 (162)
                      +..++.+..++.|.-.|..+++.+......... ...+ -.|  ....++.+..      .|.|.-+|.++|+.+.++.
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeee
Confidence            346778888999999999999887766532211 1111 111  1234444432      3679999999999888764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.16  E-value=1  Score=30.25  Aligned_cols=52  Identities=13%  Similarity=0.147  Sum_probs=37.1

Q ss_pred             cceeEE-EcCCCCEEEEecCCCeEEEEeCCCcee--eeeec------cCCCceeEEEecCC
Q psy1859         111 TGITSL-FHQEYNTFATGGSDGYVNIWDGFNKKR--LCQFH------RYDTGITSLCFSYD  162 (162)
Q Consensus       111 ~~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~------~~~~~v~~v~~~pd  162 (162)
                      ...+.+ |.|+|+++++--..|.|++++..+++.  +..+.      .-+.....|+|+||
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            456688 999999988886689999999877653  22221      12346778999885

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.82  E-value=1.7  Score=28.51  Aligned_cols=58  Identities=10%  Similarity=-0.065  Sum_probs=39.4

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeee-----ecccceeEE-EcCCCCEEEEecC
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH-----RYDTGITSL-FHQEYNTFATGGS  129 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~-----~~~~~v~~~-~~~~~~~l~~~~~  129 (162)
                      ++..+.++|.  .++....++.+.++++.+++......     ...+.+.++ |++.|..++++..
T Consensus       127 ~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g  190 (381)
T d1xipa_         127 PVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRN  190 (381)
T ss_dssp             CEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred             cccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCC
Confidence            5778888774  56667778999999998875322211     223556777 8888888877743

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.52  E-value=2.3  Score=29.45  Aligned_cols=67  Identities=18%  Similarity=0.125  Sum_probs=43.9

Q ss_pred             CEEEEecCCCeEEEEeCCCccceeeeeecc----cceeEE-EcCCCCEEEEec------CCCeEEEEeCCCceeeeeec
Q psy1859          81 NTFATGGSDGYVNIWDGFNKKRLCQFHRYD----TGITSL-FHQEYNTFATGG------SDGYVNIWDGFNKKRLCQFH  148 (162)
Q Consensus        81 ~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~----~~v~~~-~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~  148 (162)
                      ..++.++.|+.+.-.|.++++.+.......    ..++.. .-.++ .++.+.      ..|.|+-+|+++|+.+.++.
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence            467778889999999999998766553211    112211 11133 444444      36789999999999888764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=89.47  E-value=0.55  Score=32.62  Aligned_cols=48  Identities=10%  Similarity=0.103  Sum_probs=33.7

Q ss_pred             CCCEEEEecCCCeEEEEeCCCccceeeeeecccceeE-E-EcCCCC-EEEE
Q psy1859          79 EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITS-L-FHQEYN-TFAT  126 (162)
Q Consensus        79 ~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~~-~-~~~~~~-~l~~  126 (162)
                      .+.++++++.|+.++.+|.++|+.+.++......... + |..+|+ |++.
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v  537 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV  537 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence            4667888999999999999999999887643222111 2 556776 4433

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=87.90  E-value=2.2  Score=27.35  Aligned_cols=99  Identities=9%  Similarity=0.114  Sum_probs=55.8

Q ss_pred             cEEEEEEeeCCCeEEEEc--C-------------CCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCC
Q psy1859          15 QTRCIKCFPNKQGYVLSS--I-------------EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE   79 (162)
Q Consensus        15 ~~~~i~~~~~~~~l~~~~--~-------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~   79 (162)
                      ....++...++.++++-.  .             .+...+|.++...  .+...  .+..          ....|+++|+
T Consensus       151 ~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~--~~~~~--~~l~----------~pNGI~~s~d  216 (340)
T d1v04a_         151 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND--VRVVA--EGFD----------FANGINISPD  216 (340)
T ss_dssp             SEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC--EEEEE--EEES----------SEEEEEECTT
T ss_pred             CccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc--eEEEc--CCCC----------ccceeEECCC
Confidence            346677777777777621  1             1244566676543  22221  2211          5789999999


Q ss_pred             CCE-EEEecCCCeEEEEeCCCccceeeee--ecccceeEE-EcC-CCCEEEEe
Q psy1859          80 YNT-FATGGSDGYVNIWDGFNKKRLCQFH--RYDTGITSL-FHQ-EYNTFATG  127 (162)
Q Consensus        80 ~~~-l~~~~~d~~v~~wd~~~~~~~~~~~--~~~~~v~~~-~~~-~~~~l~~~  127 (162)
                      ++. +++.+..+.|+.|++..........  .-....-.+ +.+ +|.+.+++
T Consensus       217 ~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         217 GKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             CCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            865 4566678999999987543322211  123344456 665 44444443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.57  E-value=2.3  Score=27.12  Aligned_cols=45  Identities=11%  Similarity=0.030  Sum_probs=36.9

Q ss_pred             ceEEEEecCCCCEEEEecCCCeEEEEeCCCccceeeeeeccccee
Q psy1859          70 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGIT  114 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~v~  114 (162)
                      ...++..++....+..-+.-|.+.+||+.++.++..-+.....+.
T Consensus       257 FPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF  301 (327)
T d1utca2         257 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF  301 (327)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             cEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceE
Confidence            566888899888999999999999999999998877665444444

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=87.21  E-value=2  Score=26.10  Aligned_cols=32  Identities=16%  Similarity=0.214  Sum_probs=24.8

Q ss_pred             ceeEE-EcCCCCEEEEecCCCeEEEEeCCCceeee
Q psy1859         112 GITSL-FHQEYNTFATGGSDGYVNIWDGFNKKRLC  145 (162)
Q Consensus       112 ~v~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  145 (162)
                      .++-+ +.|++++++.+-.||.-+++.  +|+.+.
T Consensus       239 ~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in  271 (313)
T d2hu7a1         239 AITWLGYLPDGRLAVVARREGRSAVFI--DGERVE  271 (313)
T ss_dssp             EEEEEEECTTSCEEEEEEETTEEEEEE--TTEEEC
T ss_pred             EEEeeeeCCCCcEEEEEecCCchheee--cceEec
Confidence            45567 899999999999999998886  344443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=86.88  E-value=2.6  Score=27.03  Aligned_cols=69  Identities=9%  Similarity=0.023  Sum_probs=43.6

Q ss_pred             ceEEEEecCCCCEEEEec-----------------CCCeEEEEeCCCccceeeeeecccceeEE-EcCCCCEEEEe-cCC
Q psy1859          70 PVNAISFHQEYNTFATGG-----------------SDGYVNIWDGFNKKRLCQFHRYDTGITSL-FHQEYNTFATG-GSD  130 (162)
Q Consensus        70 ~v~~~~~~p~~~~l~~~~-----------------~d~~v~~wd~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~-~~d  130 (162)
                      ...++++..++..++|-.                 ..+.+.-||...   .......-.....+ ++||+++|+.+ ...
T Consensus       151 ~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~---~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~  227 (340)
T d1v04a_         151 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND---VRVVAEGFDFANGINISPDGKYVYIAELLA  227 (340)
T ss_dssp             SEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC---EEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred             CccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc---eEEEcCCCCccceeEECCCCCEEEEEeCCC
Confidence            467888888888777721                 123444455432   22222233456778 99999877665 467


Q ss_pred             CeEEEEeCCCc
Q psy1859         131 GYVNIWDGFNK  141 (162)
Q Consensus       131 ~~i~iwd~~~~  141 (162)
                      +.|+.|++...
T Consensus       228 ~~i~~y~~~~~  238 (340)
T d1v04a_         228 HKIHVYEKHAN  238 (340)
T ss_dssp             TEEEEEEECTT
T ss_pred             CeEEEEEeCCC
Confidence            78999988643

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.77  E-value=3.3  Score=26.36  Aligned_cols=116  Identities=14%  Similarity=0.094  Sum_probs=69.1

Q ss_pred             EEEeeCCCeEEEEcCCCcEEEEEecCCcccceeeeeeeeeeeccCcccceeceEEEEecCCCCEEEEecCCCeEEEEeCC
Q psy1859          19 IKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF   98 (162)
Q Consensus        19 i~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~v~~wd~~   98 (162)
                      .-.+|..+.++.-+ ...+.+++++.++    ..   +.+...+       +|.-=.|-.+. .|+..+ +..|+-|++.
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~----kl---ks~~~~e-------~VvfWkWis~~-~L~lVT-~taVYHW~~~  130 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKS----KM---KAHTMTD-------DVTFWKWISLN-TVALVT-DNAVYHWSME  130 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTE----EE---EEEECSS-------CCCEEEESSSS-EEEEEC-SSEEEEEESS
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhh----hh---ceEEcCC-------CcEEEEecCCC-EEEEEc-CCceEEEccc
Confidence            44778888777755 4578885554433    22   2233221       57677775543 343332 5679999996


Q ss_pred             Cc-cceeeeeecc----cceeEE-EcCCCCEEEEec---C----CCeEEEEeCCCceeeeeeccCCC
Q psy1859          99 NK-KRLCQFHRYD----TGITSL-FHQEYNTFATGG---S----DGYVNIWDGFNKKRLCQFHRYDT  152 (162)
Q Consensus        99 ~~-~~~~~~~~~~----~~v~~~-~~~~~~~l~~~~---~----d~~i~iwd~~~~~~~~~~~~~~~  152 (162)
                      .. .+.+.+..|.    ..|... .++++++++..+   .    .|.+.+|..+.+ ..+.+++|..
T Consensus       131 g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa  196 (327)
T d1utca2         131 GESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA  196 (327)
T ss_dssp             SSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEE
T ss_pred             CCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceee
Confidence            53 4566555443    345555 788888876654   2    357889998654 3444566654