Psyllid ID: psy1861

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-
MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKELRVLRSRCGPSPWRHILEDSVIVSEMQFEENAHGGTSALGHFVSSDSKGGCQGFGGALRGGLNRESREITLDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRILQRMKKDMLHSGRRPNGLIGKYSCDSHVDISRVAGDDYIKSNELPRVIKECLEDADLEEETEGEIRGIGPTPAMLGMATNQDAERNDQIVDDAEDDLGDIDDEEINSYILTEGEATNKAKLWEVLNREYLTLQAERKAREEVEGKKEKKKRKPKANKATSVAKTAGEAIEKMLKEKKISTKINYDVLKSLDFTVDVNTGEMSTEQKSAPRIIENLEITSSIKKTRAKPTKEKREPTPKTPPKVAGDNYIKSNELPRVIKECLEDADLEEDMGGEIRGIGPTPAMLGMATNQDAE
ccccHHHHHHHHHHHHHHHcccccccccEEEEcccEEEEEccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEcccEEEEEEEccccccHHHHHHHHHHHHHHHHHccccccccEEEcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccccccEEEcccccEEEEcEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHccccccccccHHHHHHHccccHHHHHcccccccccccccccccccccHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccc
cccccHHHHHHHHHHEEEEEEEccccccEEEEEcEEEEEEEEcEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEcccEEEEEEEcEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHEcEEEcccEEEEEEEEEEEcccEEEccEEcccccccEEEcccccccccEEEccccEEEEEEEEEccccccEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccHHcHHHcHHHHHHHHHcccccccHHHHHHHHHHHcccccHcHccccHHccccccHHHHcccHHHHHccHHHHccccHHcHccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHcHHHHHcHHHHHHcccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccHHHHHHHcccccccccccccccccccccHHHccccccccc
MNFDDDEKQKLIEEVHAVVTVRdakhtnfvefrNFKIVYRRYAGLYFCICvdvndnnlCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKFRNFKIVYRRYAGLYFCICvdvndnnlCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKELRVLrsrcgpspwrhiledsVIVSEMQfeenahggtsalghfvssdskggcqgfggalrgglnresreitLDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQALCisipsmdpclyvlrysnrldfgaktHEVTMTALRILQRMKKDmlhsgrrpngligkyscdshvdisrvagddyiksnelpRVIKECLEdadleeetegeirgigptpamlgmatnqdaerndqivddaeddlgdiddeeINSYILTEGEATNKAKLWEVLNREYLTLQAERKAREEVEgkkekkkrkpkankaTSVAKTAGEAIEKMLKEKKISTKINYDVLKSLDftvdvntgemsteqksaprIIENLEITSSikktrakptkekreptpktppkvagdnyiksnelPRVIKECLEdadleedmggeirgigptpamlgmatnqdae
mnfdddekqKLIEEVHAvvtvrdakhtnfvefrnfKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAgeiretsqtkvlKELRvlrsrcgpspwrhILEDSVIVSEMQFEENAHGGTSALGHFVSSDSKGGCQGFGGalrgglnresREITLDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRILQRMKKDMLHSGRRPNGLIGKYSCDSHVDISRVAgddyiksnelprVIKECLEDAdleeetegeirgigptpaMLGMATNQDAERNDQIVDDAEDDLGDIDDEEINSYIltegeatnkakLWEVLNREYLTlqaerkareevegkkekkkrkpkankatsvaktagEAIEKMlkekkistkinydvlkslDFTVDVNTgemsteqksapriienleitssikktrakptkekreptpktppkvagdnyiksnelprVIKECLEDADLEEDMGGEIrgigptpamlgmatnqdae
MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKELRVLRSRCGPSPWRHILEDSVIVSEMQFEENAHGGTSALGHFVSSDSKGGCQGFGGALRGGLNRESREITLDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRILQRMKKDMLHSGRRPNGLIGKYSCDSHVDISRVAGDDYIKSNELPRVIKecledadleeetegeirgigPTPAMLGMATNQDAERNDQivddaeddlgdiddeeiNSYILTEGEATNKAKLWEVLNREYLTLQaerkareevegkkekkkrkpkankaTSVAKTAGEAIEKMLKEKKISTKINYDVLKSLDFTVDVNTGEMSTEQKSAPRIIENLEITSSIKKTRAkptkekreptpktppkVAGDNYIKSNELPRVIKECLEDADLEEDMGGEIRGIGPTPAMLGMATNQDAE
**********LIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKELRVLRSRCGPSPWRHILEDSVIVSEMQFEE******SALGHFV*****GGCQGFGGALRGGLNRESREITLDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRILQRMKKDMLHSGRRPNGLIGKYSCDSHVDISRVAGDDYIKSNELPRVIKECLE**************************************************EINSYILTEGEATNKAKLWEVLNREYLTL*********************************************ISTKINYDVLKSLDFTVDVN***********************************************************VIKEC*********************************
*******KQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKELRVLRSRCGP****HILEDSVIVSEMQFEENAHGGTSAL*******************************LDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRIL****************LIGKYSCDSHVDISRVAGDDYIKSNELPRVIKECL********************************************************************LWEVLNR*****************************************************KINYDVL***********************************************************************************************************
MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKELRVLRSRCGPSPWRHILEDSVIVSEMQFEENAHGGTSALGHFVSSDSKGGCQGFGGALRGGLNRESREITLDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRILQRMKKDMLHSGRRPNGLIGKYSCDSHVDISRVAGDDYIKSNELPRVIKECLEDADLEEETEGEIRGIGPTPAMLGMATNQDAERNDQIVDDAEDDLGDIDDEEINSYILTEGEATNKAKLWEVLNREYLTLQAER***************************TAGEAIEKMLKEKKISTKINYDVLKSLDFTVDVNTGEMSTEQKSAPRIIENLEITSSIK********************VAGDNYIKSNELPRVIKECLEDADLEEDMGGEIRGIGPTPAMLGMATNQDAE
*NFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKELRVLRSRCGPSPWRHILEDSVIVSEMQFEENAHGGTSALGHFVSSDSK**CQGF*G*******RESREITLDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRILQRMKKDMLHSGRRPNGLIGKYSCDSHVDISRVAGDDYIKSNELPRVIKECLE****************PTP***GMA*N***E*****VDDAEDDLGDIDDEEINSYILTEGEATNKAKLWEVLNREYLTLQAERKAR***********************KTAGEAIEKMLKEKKISTKINYDVLKSLD**************************************************************************************IGPTP************
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MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKELRVLRSRCGPSPWRHILEDSVIVSEMQFEENAHGGTSALGHFVSSDSKGGCQGFGGALRGGLNRESREITLDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRILQRMKKDMLHSGRRPNGLIGKYSCDSHVDISRVAGDDYIKSNELPRVIKECLEDADLEEETEGEIRGIGPTPAMLGMATNQDAERNDQIVDDAEDDLGDIDDEEINSYILTEGEATNKAKLWEVLNREYLTxxxxxxxxxxxxxxxxxxxxxPKANKATSVAKTAGEAIEKMLKEKKISTKINYDVLKSLDFTVDVNTGEMSTEQKSAPRIIENLEITSSIKKTRAKPTKEKREPTPKTPPKVAGDNYIKSNELPRVIKECLEDADLEEDMGGEIRGIGPTPAMLGMATNQDAE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query661 2.2.26 [Sep-21-2011]
Q8CFK2 676 Transcription factor IIIB yes N/A 0.284 0.278 0.55 9e-65
Q92994 677 Transcription factor IIIB yes N/A 0.284 0.277 0.555 4e-62
P62744142 AP-2 complex subunit sigm yes N/A 0.134 0.626 0.966 6e-46
Q5R940142 AP-2 complex subunit sigm no N/A 0.134 0.626 0.966 6e-46
P62743142 AP-2 complex subunit sigm no N/A 0.134 0.626 0.966 6e-46
P53680142 AP-2 complex subunit sigm no N/A 0.134 0.626 0.966 6e-46
Q17QC5142 AP-2 complex subunit sigm yes N/A 0.134 0.626 0.966 6e-46
Q9P6R0492 Transcription factor IIIB yes N/A 0.301 0.404 0.415 7e-43
P43072553 Transcription factor IIIB N/A N/A 0.302 0.361 0.385 1e-36
P29056596 Transcription factor IIIB yes N/A 0.293 0.325 0.363 1e-35
>sp|Q8CFK2|TF3B_MOUSE Transcription factor IIIB 90 kDa subunit OS=Mus musculus GN=Brf1 PE=1 SV=1 Back     alignment and function desciption
 Score =  248 bits (634), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 110/200 (55%), Positives = 156/200 (78%)

Query: 188 ILEDSVIVSEMQFEENAHGGTSALGHFVSSDSKGGCQGFGGALRGGLNRESREITLDNCK 247
           +LED++IVSE+QF EN+ GG+SA+G FVS D  G     GG     L +ESR  TL N +
Sbjct: 31  VLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQTLQNGR 90

Query: 248 RNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLI 307
           R+I  L +QL+LNQHCL+T+FN +KMA+S++LT+GR+   V AAC+Y+ CR EGT H+L+
Sbjct: 91  RHIHHLGSQLQLNQHCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150

Query: 308 DFSELLQICIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRI 367
           D S+LLQ+ ++ LG+T+L L++ LCI+ P++DPCLY+ R+++ L+FG K HEV+MTALR+
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGEKNHEVSMTALRL 210

Query: 368 LQRMKKDMLHSGRRPNGLIG 387
           LQRMK+D +H+GRRP+GL G
Sbjct: 211 LQRMKRDWMHTGRRPSGLCG 230
General activator of RNA polymerase which utilizes different TFIIIB complexes at structurally distinct promoters.
Mus musculus (taxid: 10090)
>sp|Q92994|TF3B_HUMAN Transcription factor IIIB 90 kDa subunit OS=Homo sapiens GN=BRF1 PE=1 SV=1 Back     alignment and function description
>sp|P62744|AP2S1_RAT AP-2 complex subunit sigma OS=Rattus norvegicus GN=Ap2s1 PE=2 SV=1 Back     alignment and function description
>sp|Q5R940|AP2S1_PONAB AP-2 complex subunit sigma OS=Pongo abelii GN=AP2S1 PE=2 SV=1 Back     alignment and function description
>sp|P62743|AP2S1_MOUSE AP-2 complex subunit sigma OS=Mus musculus GN=Ap2s1 PE=1 SV=1 Back     alignment and function description
>sp|P53680|AP2S1_HUMAN AP-2 complex subunit sigma OS=Homo sapiens GN=AP2S1 PE=1 SV=2 Back     alignment and function description
>sp|Q17QC5|AP2S1_BOVIN AP-2 complex subunit sigma OS=Bos taurus GN=AP2S1 PE=2 SV=1 Back     alignment and function description
>sp|Q9P6R0|TF3B_SCHPO Transcription factor IIIB 60 kDa subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brf1 PE=1 SV=2 Back     alignment and function description
>sp|P43072|TF3B_CANAL Transcription factor IIIB 70 kDa subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TDS4 PE=3 SV=1 Back     alignment and function description
>sp|P29056|TF3B_YEAST Transcription factor IIIB 70 kDa subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRF1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query661
351697943203 AP-2 complex subunit sigma [Heterocephal 0.239 0.778 0.825 7e-78
345498426668 PREDICTED: transcription factor IIIB 90 0.299 0.296 0.636 2e-73
157128816609 transcription factor IIIB 90 kDa subunit 0.295 0.320 0.637 8e-73
157128814644 transcription factor IIIB 90 kDa subunit 0.295 0.302 0.637 8e-73
189238877617 PREDICTED: similar to transcription fact 0.282 0.303 0.62 2e-72
347971505688 AGAP004233-PA [Anopheles gambiae str. PE 0.295 0.283 0.627 8e-72
328785533661 PREDICTED: transcription factor IIIB 90 0.301 0.301 0.615 2e-71
380022853631 PREDICTED: transcription factor IIIB 90 0.301 0.315 0.615 3e-71
350403589659 PREDICTED: transcription factor IIIB 90 0.301 0.301 0.61 7e-71
340722869659 PREDICTED: transcription factor IIIB 90 0.301 0.301 0.61 8e-71
>gi|351697943|gb|EHB00862.1| AP-2 complex subunit sigma [Heterocephalus glaber] Back     alignment and taxonomy information
 Score =  298 bits (763), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 147/178 (82%), Positives = 154/178 (86%), Gaps = 20/178 (11%)

Query: 1   MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCY 60
           M FDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKI+YRRYAGLYFCICVDV+DNNL Y
Sbjct: 44  MQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVSDNNLAY 103

Query: 61  LEAIHNFVEVLNEYFHNVCELDLVFNFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLE 120
           LEAIHNFVE                    FRNFKI+YRRYAGLYFCICVDV+DNNL YLE
Sbjct: 104 LEAIHNFVE--------------------FRNFKIIYRRYAGLYFCICVDVSDNNLAYLE 143

Query: 121 AIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKELRVLRS 178
           AIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLK+L +L+S
Sbjct: 144 AIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQS 201

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota
>gi|345498426|ref|XP_001607399.2| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|157128816|ref|XP_001655207.1| transcription factor IIIB 90 kDa subunit (TFIIIB90) [Aedes aegypti] gi|108882162|gb|EAT46387.1| AAEL002427-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|157128814|ref|XP_001655206.1| transcription factor IIIB 90 kDa subunit (TFIIIB90) [Aedes aegypti] gi|108882161|gb|EAT46386.1| AAEL002427-PB [Aedes aegypti] Back     alignment and taxonomy information
>gi|189238877|ref|XP_973702.2| PREDICTED: similar to transcription factor IIIB 90 kDa subunit (TFIIIB90) [Tribolium castaneum] Back     alignment and taxonomy information
>gi|347971505|ref|XP_313145.5| AGAP004233-PA [Anopheles gambiae str. PEST] gi|333468699|gb|EAA08645.5| AGAP004233-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|328785533|ref|XP_623775.3| PREDICTED: transcription factor IIIB 90 kDa subunit-like isoform 2 [Apis mellifera] Back     alignment and taxonomy information
>gi|380022853|ref|XP_003695250.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Apis florea] Back     alignment and taxonomy information
>gi|350403589|ref|XP_003486845.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340722869|ref|XP_003399823.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query661
FB|FBgn0038499 662 Brf "Brf" [Drosophila melanoga 0.301 0.300 0.621 4.6e-80
ZFIN|ZDB-GENE-030131-6334 661 brf1a "BRF1 homolog, subunit o 0.302 0.302 0.55 1.4e-72
UNIPROTKB|F1NQ85593 BRF1 "Uncharacterized protein" 0.302 0.337 0.56 3.7e-72
MGI|MGI:1919558 676 Brf1 "BRF1 homolog, subunit of 0.302 0.295 0.55 2e-71
UNIPROTKB|Q92994 677 BRF1 "Transcription factor III 0.302 0.295 0.555 1.8e-70
ZFIN|ZDB-GENE-030131-6248 693 brf1b "BRF1 homolog, subunit o 0.302 0.288 0.54 2.9e-70
UNIPROTKB|F1PRK4 616 BRF1 "Uncharacterized protein" 0.243 0.261 0.559 1.4e-60
WB|WBGene00000271 759 brf-1 [Caenorhabditis elegans 0.295 0.256 0.492 2.3e-56
UNIPROTKB|G3X7R9 639 G3X7R9 "Uncharacterized protei 0.252 0.261 0.494 6.3e-53
POMBASE|SPBC13E7.10c492 brf1 "transcription factor TFI 0.301 0.404 0.415 3.3e-45
FB|FBgn0038499 Brf "Brf" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 670 (240.9 bits), Expect = 4.6e-80, Sum P(2) = 4.6e-80
 Identities = 125/201 (62%), Positives = 161/201 (80%)

Query:   188 ILEDSVIVSEMQFEENAHGGTSALGHFVSSDSKGGCQGFG-GALRGGLNRESREITLDNC 246
             +LEDS+IVSE+QFEE  HG  +A+G FVS++S GG   +G G  + G   ESRE+T+   
Sbjct:    32 VLEDSLIVSEVQFEEVGHGA-AAIGQFVSAESSGGATNYGYGKFQVGSGTESREVTIKKA 90

Query:   247 KRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLL 306
             K++I+ LC QL+L+QH  +T+ N +KMAL R+LT+GR+   + AACVYMTCR EGTSHLL
Sbjct:    91 KKDITLLCQQLQLSQHYADTALNFFKMALGRHLTRGRKSTHIYAACVYMTCRTEGTSHLL 150

Query:   307 IDFSELLQICIFELGRTYLRLSQALCISIPSMDPCLYVLRYSNRLDFGAKTHEVTMTALR 366
             ID S++ QIC +ELGRTYL+LS ALCI+IPS+DPCLY++R++NRL  GAKTHEV+MTALR
Sbjct:   151 IDISDVQQICSYELGRTYLKLSHALCINIPSLDPCLYIMRFANRLQLGAKTHEVSMTALR 210

Query:   367 ILQRMKKDMLHSGRRPNGLIG 387
             I+QRMKKD +HSGRRP GL G
Sbjct:   211 IVQRMKKDCMHSGRRPTGLCG 231
GO:0006359 "regulation of transcription from RNA polymerase III promoter" evidence=ISS;IDA;IPI
GO:0000126 "transcription factor TFIIIB complex" evidence=ISS
GO:0008134 "transcription factor binding" evidence=IPI
GO:0005667 "transcription factor complex" evidence=IPI
GO:0006383 "transcription from RNA polymerase III promoter" evidence=IDA
GO:0005634 "nucleus" evidence=NAS
GO:0017025 "TBP-class protein binding" evidence=IEA
GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0001046 "core promoter sequence-specific DNA binding" evidence=IPI
GO:0048812 "neuron projection morphogenesis" evidence=IMP
ZFIN|ZDB-GENE-030131-6334 brf1a "BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIBa" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQ85 BRF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1919558 Brf1 "BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q92994 BRF1 "Transcription factor IIIB 90 kDa subunit" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-6248 brf1b "BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIBb" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PRK4 BRF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
WB|WBGene00000271 brf-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|G3X7R9 G3X7R9 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
POMBASE|SPBC13E7.10c brf1 "transcription factor TFIIIB complex subunit Brf1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P53680AP2S1_HUMANNo assigned EC number0.96620.13460.6267noN/A
Q5BFF8AP2S_EMENINo assigned EC number0.70780.13310.6068yesN/A
Q5R940AP2S1_PONABNo assigned EC number0.96620.13460.6267noN/A
Q17QC5AP2S1_BOVINNo assigned EC number0.96620.13460.6267yesN/A
Q4ICG5AP2S_GIBZENo assigned EC number0.72720.13160.6083yesN/A
P62744AP2S1_RATNo assigned EC number0.96620.13460.6267yesN/A
Q84WL9AP2S_ARATHNo assigned EC number0.59090.13310.6197yesN/A
P62743AP2S1_MOUSENo assigned EC number0.96620.13460.6267noN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query661
pfam01217142 pfam01217, Clat_adaptor_s, Clathrin adaptor comple 6e-44
COG5030152 COG5030, APS2, Clathrin adaptor complex, small sub 1e-33
COG5030152 COG5030, APS2, Clathrin adaptor complex, small sub 1e-33
COG1405285 COG1405, SUA7, Transcription initiation factor TFI 7e-31
pfam0774195 pfam07741, BRF1, Brf1-like TBP-binding domain 7e-27
PRK00423310 PRK00423, tfb, transcription initiation factor IIB 5e-15
pfam0038271 pfam00382, TFIIB, Transcription factor TFIIB repea 1e-12
cd0004388 cd00043, CYCLIN, Cyclin box fold 9e-11
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 2e-07
TIGR01069771 TIGR01069, mutS2, MutS2 family protein 0.004
>gnl|CDD|110234 pfam01217, Clat_adaptor_s, Clathrin adaptor complex small chain Back     alignment and domain information 
 Score =  153 bits (389), Expect = 6e-44
 Identities = 61/176 (34%), Positives = 86/176 (48%), Gaps = 58/176 (32%)

Query: 1   MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCY 60
             + D E+QKLIE+++A+++ R  K +NF+EF + K++Y+RYA LYF + VD  DN L  
Sbjct: 21  TPYSDPEQQKLIEQIYALISARKPKMSNFIEFNDLKVIYKRYATLYFVVIVDDQDNELII 80

Query: 61  LEAIHNFVEVLNEYFHNVCELDLVFNFYKFRNFKIVYRRYAGLYFCICVDVNDNNLCYLE 120
           LE IH FVE L+ YF NVCELDL+FNF K             +Y                
Sbjct: 81  LELIHRFVESLDRYFGNVCELDLIFNFEK-------------VYL--------------- 112

Query: 121 AIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKELRVL 176
                  +L+E                       M + GEI ETS+ +VL  + +L
Sbjct: 113 -------ILDE-----------------------MVMGGEILETSKNEVLHRVALL 138

Length = 142
>gnl|CDD|227363 COG5030, APS2, Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|227363 COG5030, APS2, Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|224323 COG1405, SUA7, Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain Back     alignment and domain information
>gnl|CDD|234758 PRK00423, tfb, transcription initiation factor IIB; Reviewed Back     alignment and domain information
>gnl|CDD|109440 pfam00382, TFIIB, Transcription factor TFIIB repeat Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 661
KOG1598|consensus521 100.0
PRK00423310 tfb transcription initiation factor IIB; Reviewed 100.0
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 100.0
COG5030152 APS2 Clathrin adaptor complex, small subunit [Intr 100.0
KOG0934|consensus145 100.0
KOG1597|consensus308 100.0
KOG0936|consensus182 100.0
KOG0935|consensus143 100.0
PF0774197 BRF1: Brf1-like TBP-binding domain; InterPro: IPR0 99.92
KOG0936|consensus182 99.89
PF01217141 Clat_adaptor_s: Clathrin adaptor complex small cha 99.87
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 99.72
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.57
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 99.41
KOG0934|consensus145 99.02
KOG1597|consensus308 98.98
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.95
COG5030152 APS2 Clathrin adaptor complex, small subunit [Intr 98.94
KOG0835|consensus367 98.86
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.86
TIGR00569305 ccl1 cyclin ccl1. University). 98.84
KOG0834|consensus323 98.8
KOG0935|consensus143 98.71
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 98.61
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 98.49
KOG1598|consensus521 98.47
KOG0656|consensus335 98.14
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 97.66
KOG0794|consensus264 97.62
PF01857135 RB_B: Retinoblastoma-associated protein B domain; 97.36
KOG3343|consensus175 96.81
KOG0937|consensus424 96.41
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 96.34
KOG0653|consensus391 95.97
KOG2496|consensus325 95.78
COG5024440 Cyclin [Cell division and chromosome partitioning] 95.24
KOG2740|consensus418 95.13
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 95.03
KOG0938|consensus446 95.02
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 94.63
PF01217141 Clat_adaptor_s: Clathrin adaptor complex small cha 94.37
KOG0835|consensus367 91.92
PF0827143 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013 91.06
KOG0655|consensus408 89.43
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 88.72
KOG3343|consensus175 86.98
KOG4557|consensus262 86.33
KOG4164|consensus497 82.25
>KOG1598|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.3e-57  Score=493.45  Aligned_cols=367  Identities=35%  Similarity=0.502  Sum_probs=303.5

Q ss_pred             HhhhhhccCCCCcceeeeccccccccceeecCCCCccccccccccCCCCCCcCCCCccCCCCCCCchhHHHHHHHHHHHH
Q psy1861         173 LRVLRSRCGPSPWRHILEDSVIVSEMQFEENAHGGTSALGHFVSSDSKGGCQGFGGALRGGLNRESREITLDNCKRNISS  252 (661)
Q Consensus       173 L~~lcs~CG~~~~g~VLeE~~Ivse~tF~e~~~G~~~~~G~fv~~~~~~~~~~~g~~~~~~~~~~srEr~L~~a~~~I~~  252 (661)
                      -...|+.||     +|+|+++|++++||.++      ++|+||+.++.|.+          .+.+++++++++|++.|..
T Consensus        18 g~~~C~~CG-----~v~E~~~ivsev~F~e~------~~G~~v~~~~~g~~----------~s~e~r~~t~~n~r~~i~~   76 (521)
T KOG1598|consen   18 GNLYCTACG-----TVLEYNNIVAEVTFVEG------AQGQFVRVGQSGAG----------SSLESREKTIYNARRLIEE   76 (521)
T ss_pred             CCceecccc-----ceeeccceeEEeeeecc------cceeEEeccccCCc----------cchHHHHHHHHHHHhHHHH
Confidence            346788888     99999999999999986      89999999877642          1579999999999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHHhc
Q psy1861         253 LCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELGRTYLRLSQALC  332 (661)
Q Consensus       253 i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lgrtyk~L~k~L~  332 (661)
                      ++.+|+|++ +++.|.+||++|.++||++||+...|+|||+|++||+++++|+|+||+++++|+++.||++|++|++.|.
T Consensus        77 ~~~~l~l~~-~~~~a~~~~k~a~~~nftkGr~~~~vvasClY~vcR~e~t~hlliDfS~~Lqv~Vy~LG~~~l~l~~~L~  155 (521)
T KOG1598|consen   77 LTERLNLGN-KTEVAFNFFKLAPDRNFTKGRRSTEVVAACLYLVCRLEKTDHLLIDFSSYLQVSVYDLGSNFLEVTDSLS  155 (521)
T ss_pred             HHHhcCcch-HHHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHhhCCceEEEEeccceEEehhhhhHHHHHHHHHhc
Confidence            999999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cc---CCCCChhhHHHHHHhhcCCCcccHHHHHHHHHHHHHhhcccccCCCCccceeecc---------cccCHHHHHHH
Q psy1861         333 IS---IPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRILQRMKKDMLHSGRRPNGLIGKY---------SCDSHVDISRV  400 (661)
Q Consensus       333 i~---~p~~dP~~yI~Rf~~~L~L~~~~~~V~~~A~~Iv~~m~~d~i~tGRrP~gIAaAA---------~~rT~~eIa~~  400 (661)
                      +.   .|.+||+.||+||+++|.+++++++|+.+|.+|+++|++|||++||||+||||||         +++|+.||+++
T Consensus       156 i~en~~plvDpsL~i~Rfa~~L~~g~~~~~Vv~~a~~L~~rMkrdwm~tGRRPsglcGAaLliAar~h~~~rsi~dIv~v  235 (521)
T KOG1598|consen  156 IGENVSPLVDPSLYIVRFSCRLLFGDKTEDVAKTATRLAQRMKRDWMQTGRRPSGLCGAALLIAARMHGFRRTIGDIAKV  235 (521)
T ss_pred             cccccccccCcceeeechhHhhhcCCchHHHHHHHHHHHHHHHHHHHHhCCCccchhHHHHHHHHHHcCccccHHHHHHH
Confidence            98   8999999999999999999999999999999999999999999999999999999         89999999998


Q ss_pred             Hh----hhhhhhhcchHHHHHhhhhccc-------cc----------------------------ccc------------
Q psy1861         401 AG----DDYIKSNELPRVIKECLEDADL-------EE----------------------------ETE------------  429 (661)
Q Consensus       401 ag----tiR~~ykeL~~~~~~~l~~~~~-------e~----------------------------~~e------------  429 (661)
                      +.    |++.||+|+.+.+...|+..+-       ++                            +.+            
T Consensus       236 vhV~e~Tl~kRl~Ef~~T~s~~Lti~ef~~~d~e~~~~ppsft~~~~~~~k~~~~~k~~l~~~~~~~e~~~~~~~~~~~~  315 (521)
T KOG1598|consen  236 VHVCESTLSKRLKEFSDTLSGDLTIDELAEIDLEYESDPPSFTASPSKEAKYVEDKKKMLSRTMQLVELANETWLVTLRH  315 (521)
T ss_pred             HHHhHHHHHHHHHHHhccccccccHHHHHhhhhhhccCcchhhcccchhhhhhhhhhhhhhhhhhhhhcccchhhhcccc
Confidence            76    8999998888876655542110       00                            000            


Q ss_pred             ------ccccCCCCCcccc-cccc------------cccc-------------------c-----cccccCCCCCCcCCC
Q psy1861         430 ------GEIRGIGPTPAML-GMAT------------NQDA-------------------E-----RNDQIVDDAEDDLGD  466 (661)
Q Consensus       430 ------~~~~g~~p~~~~~-~~~~------------~~~~-------------------~-----~~~~~~~~~~~~lsd  466 (661)
                            +.+.++..++... ...+            ++..                   +     .......+....+++
T Consensus       316 ~~~~~~~~l~~~~q~~~~~~~~~e~~~~~~~e~~~ssE~~dk~~~g~~~~~~~~~sd~~~~~~~~~~~~~~~d~~~~~~~  395 (521)
T KOG1598|consen  316 SLPVITGGLFLAWQDLQPRDRLVESYDDLASECPLSSEDEDKPASGRLAELLAVLSDMAEQLASVWLRVLTLDKRSGVKH  395 (521)
T ss_pred             CCcccchhhhcccccchhhhhhhhhhhhhhhcCcccccccCCcCccccchhhhcccccchhhhhcchhhhhccccccccc
Confidence                  0011110000000 0000            0000                   0     001223456678999


Q ss_pred             CChHHHHhhcCCHHHHHHHHHHHHHhcHHHHHHHHH---HHHhHHhhCCcccccCCccccCCCCCCCCHHHHHHHHHHhc
Q psy1861         467 IDDEEINSYILTEGEATNKAKLWEVLNREYLTLQAE---RKAREEVEGKKEKKKRKPKANKATSVAKTAGEAIEKMLKEK  543 (661)
Q Consensus       467 iDD~Eid~yil~eeE~~~K~~lW~~~N~eyl~eq~~---r~~~e~~~~~~~kkk~k~~~~k~~~~~~Ta~EA~~~ml~~K  543 (661)
                      +||.+++.++|++++...++.+ | .|++|+.|+..   +.+++.++|+... ++|..++++.+++.||.||+++|++.|
T Consensus       396 ~~~~~l~r~~l~~~a~~~a~~~-~-~n~e~l~E~~~~~~~~ak~~~~g~~~~-~~k~~~r~~s~~~~t~~eavk~~~~i~  472 (521)
T KOG1598|consen  396 IDDLLLERQLLEESAGRDATEP-M-ENAETLVEERPGKAKAAKEREEGINSL-SKKVGERRNSPELLTAPEAVKSMKEIK  472 (521)
T ss_pred             cCHHHHHHHHhhhHHhhhcchh-h-hhHHHHHhhchhhhhhhHhhhhccccc-ccccccccCCCcccccHHHHHHHHhcc
Confidence            9999999999999999999999 7 99999999986   4555556665222 223345678899999999999999999


Q ss_pred             CCCCCCCHHHHhcccCCCCCC
Q psy1861         544 KISTKINYDVLKSLDFTVDVN  564 (661)
Q Consensus       544 k~S~KINYd~L~~L~~~~~~~  564 (661)
                      ++|++|||++|.+||+...+.
T Consensus       473 ~~s~~in~~~L~~i~d~~~e~  493 (521)
T KOG1598|consen  473 PVSSVINYSVLENISDAEIEQ  493 (521)
T ss_pred             ccccchHHHHHHHHhhhhccc
Confidence            999999999999999988765

>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0934|consensus Back     alignment and domain information
>KOG1597|consensus Back     alignment and domain information
>KOG0936|consensus Back     alignment and domain information
>KOG0935|consensus Back     alignment and domain information
>PF07741 BRF1: Brf1-like TBP-binding domain; InterPro: IPR011665 The Vaccinia virus has an infection-induced host cell cycle control mechanism Back     alignment and domain information
>KOG0936|consensus Back     alignment and domain information
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG0934|consensus Back     alignment and domain information
>KOG1597|consensus Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0835|consensus Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0834|consensus Back     alignment and domain information
>KOG0935|consensus Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1598|consensus Back     alignment and domain information
>KOG0656|consensus Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0794|consensus Back     alignment and domain information
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation Back     alignment and domain information
>KOG3343|consensus Back     alignment and domain information
>KOG0937|consensus Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG0653|consensus Back     alignment and domain information
>KOG2496|consensus Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2740|consensus Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>KOG0938|consensus Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0835|consensus Back     alignment and domain information
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0655|consensus Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG3343|consensus Back     alignment and domain information
>KOG4557|consensus Back     alignment and domain information
>KOG4164|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query661
2vgl_S142 Ap2 Clathrin Adaptor Core Length = 142 8e-47
2vgl_S142 Ap2 Clathrin Adaptor Core Length = 142 2e-45
1w63_Q158 Ap1 Clathrin Adaptor Core Length = 158 7e-22
1d3u_B201 Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+T 2e-10
1ais_B200 Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA- 2e-10
1tfb_A208 Nmr Studies Of Human General Transcription Factor T 1e-06
2phg_A206 Model For Vp16 Binding To Tfiib Length = 206 1e-06
1vol_A204 Tfiib (Human Core Domain)TBP (A.THALIANA)TATA ELEME 1e-06
1c9b_A207 Crystal Structure Of A Human Tbp Core Domain-Human 1e-06
>pdb|2VGL|S Chain S, Ap2 Clathrin Adaptor Core Length = 142 Back     alignment and structure 
Iteration: 1

 Score =  185 bits (469), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 86/89 (96%), Positives = 87/89 (97%)
Query: 1   MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCY 60
           M FDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKI+YRRYAGLYFCICVDVNDNNL Y
Sbjct: 21  MQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY 80
Query: 61  LEAIHNFVEVLNEYFHNVCELDLVFNFYK 89
           LEAIHNFVEVLNEYFHNVCELDLVFNFYK
Sbjct: 81  LEAIHNFVEVLNEYFHNVCELDLVFNFYK 109
>pdb|2VGL|S Chain S, Ap2 Clathrin Adaptor Core Length = 142 Back     alignment and structure
>pdb|1W63|Q Chain Q, Ap1 Clathrin Adaptor Core Length = 158 Back     alignment and structure
>pdb|1D3U|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA- Box Complex From Pyrococcus Woesei Length = 201 Back     alignment and structure
>pdb|1AIS|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box Complex From Pyrococcus Woesei Length = 200 Back     alignment and structure
>pdb|1TFB|A Chain A, Nmr Studies Of Human General Transcription Factor Tfiib: Dynamics And Interaction With Vp16 Activation Domain, 20 Structures Length = 208 Back     alignment and structure
>pdb|2PHG|A Chain A, Model For Vp16 Binding To Tfiib Length = 206 Back     alignment and structure
>pdb|1VOL|A Chain A, Tfiib (Human Core Domain)TBP (A.THALIANA)TATA ELEMENT Ternary Complex Length = 204 Back     alignment and structure
>pdb|1C9B|A Chain A, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib Core Domain Complex Bound To An Extended, Modified Adenoviral Major Late Promoter (Admlp) Length = 207 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query661
1ais_B200 TFB TFIIB, protein (transcription initiation facto 1e-34
1ais_B200 TFB TFIIB, protein (transcription initiation facto 1e-05
1c9b_A207 General transcription factor IIB; protein-DNA comp 1e-31
1c9b_A207 General transcription factor IIB; protein-DNA comp 4e-05
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 1e-23
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 4e-21
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 7e-23
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 8e-05
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 1e-22
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 1e-17
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 2e-22
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 2e-19
1ngm_B72 Transcription factor IIIB BRF1 subunit; TFIIIB, TB 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 3e-06
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 3e-06
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 5e-05
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Length = 200 Back     alignment and structure
 Score =  129 bits (326), Expect = 1e-34
 Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 5/153 (3%)

Query: 237 ESREITLDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMT 296
           ++ E  L      +  +  QL+L +H  E +  LY+ A+ + L +GR    V AACVY  
Sbjct: 3   DAAERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAA 62

Query: 297 CRLEGTSHLLIDFSELLQICIFELGRTYLRLSQALCISIP--SMDPCLYVLRYSNRLDFG 354
           CRL      L + +++ ++   E+GR+Y  +++ L ++     + P  YV ++++ L   
Sbjct: 63  CRLLKVPRTLDEIADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGL- 121

Query: 355 AKTHEVTMTALRILQRMKKDMLHSGRRPNGLIG 387
             + +V   A+ IL    K  L SG+ P GL+ 
Sbjct: 122 --SEKVRRRAIEILDEAYKRGLTSGKSPAGLVA 152
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Length = 200 Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Length = 207 Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Length = 207 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142 Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Length = 345 Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Length = 345 Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153 Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153 Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158 Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158 Back     alignment and structure
>1ngm_B Transcription factor IIIB BRF1 subunit; TFIIIB, TBP, TAF, protein-DNA complex, transcription/DNA complex; 2.95A {Saccharomyces cerevisiae} SCOP: j.104.1.1 Length = 72 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423 Back     alignment and structure
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435 Back     alignment and structure
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query661
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 100.0
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 100.0
1ais_B200 TFB TFIIB, protein (transcription initiation facto 100.0
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.97
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 99.94
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 99.93
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 99.93
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 99.78
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 99.74
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 99.72
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 99.63
2ivx_A257 Cyclin-T2; transcription regulation, cell division 99.59
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 99.59
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 99.58
1ngm_B72 Transcription factor IIIB BRF1 subunit; TFIIIB, TB 99.56
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 99.55
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 99.53
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.52
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 99.51
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 99.49
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 99.44
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 99.42
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 99.42
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 99.23
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.23
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.07
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 98.84
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 98.65
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 97.26
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 97.08
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 97.07
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 97.05
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 97.02
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 96.93
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 96.92
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 96.75
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 96.66
2ivx_A257 Cyclin-T2; transcription regulation, cell division 96.59
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 96.38
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 96.22
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 95.94
3m03_A95 ORC6, origin recognition complex subunit 6; helix 95.76
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 95.36
4ell_A411 Retinoblastoma-associated protein; cyclin fold, tu 95.15
2r7g_A347 PP110, retinoblastoma-associated protein, P105-RB, 95.11
3h4c_A260 Transcription factor TFIIB-like; cyclin, transcrip 94.74
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 94.74
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 94.71
2qdj_A304 Retinoblastoma-associated protein; cyclin fold, cy 94.67
4elj_A656 Retinoblastoma-associated protein; cyclin fold, tu 94.47
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 92.2
4elj_A 656 Retinoblastoma-associated protein; cyclin fold, tu 89.53
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 88.92
1dl6_A58 Transcription factor II B (TFIIB); zinc ribbon, ge 86.56
3k1f_M197 Transcription initiation factor IIB; RNA polymeras 82.8
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
Probab=100.00  E-value=4.9e-44  Score=382.24  Aligned_cols=238  Identities=16%  Similarity=0.222  Sum_probs=127.0

Q ss_pred             hhhhhccCCCCcceeeeccccccccce---eecC--CCCcccccccc----ccCCCCCCcCCC--------C---ccCCC
Q psy1861         174 RVLRSRCGPSPWRHILEDSVIVSEMQF---EENA--HGGTSALGHFV----SSDSKGGCQGFG--------G---ALRGG  233 (661)
Q Consensus       174 ~~lcs~CG~~~~g~VLeE~~Ivse~tF---~e~~--~G~~~~~G~fv----~~~~~~~~~~~g--------~---~~~~~  233 (661)
                      ..+|..||     .||+|++||.+++|   .++.  +.+++++|...    .+.+.+...+++        .   +||.+
T Consensus        42 ~~vC~~CG-----lVl~e~~iD~g~EWR~f~~d~~~~~d~sRvG~~~~~~~~~~glsT~I~~~~~~~~~~~~~L~r~q~r  116 (345)
T 4bbr_M           42 DVVCALCG-----LVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGK  116 (345)
T ss_dssp             EEEETTTC-----BEEESCCBCHHHHHTTTSCSCSSSCCSSCCEEEECHHHHCSCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             cEEeCCCC-----CCccCcccccCccccCCCcccccCCCcCCCCCCCCccccCCCcceeecCCCCcchhhHHHHHHHHHh
Confidence            36677777     89999999988854   4332  44667777543    222222111111        0   23444


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHh
Q psy1861         234 LNRESREITLDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELL  313 (661)
Q Consensus       234 ~~~~srEr~L~~a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~  313 (661)
                      +.++++|++|..|++.|+++|++|+||++|+++|+.||++++++++++||+.++++|||||+|||++++||||+||++++
T Consensus       117 ~~~~~~er~L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~  196 (345)
T 4bbr_M          117 NVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLI  196 (345)
T ss_dssp             TCCCCSSSSTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHH
T ss_pred             hhcChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHh
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhccc------------CCCCChhhHHHHHHhhcCCCcccHHHHHHHHHHHHHhhcccccCCCC
Q psy1861         314 QICIFELGRTYLRLSQALCIS------------IPSMDPCLYVLRYSNRLDFGAKTHEVTMTALRILQRMKKDMLHSGRR  381 (661)
Q Consensus       314 ~Vsv~~Lgrtyk~L~k~L~i~------------~p~~dP~~yI~Rf~~~L~L~~~~~~V~~~A~~Iv~~m~~d~i~tGRr  381 (661)
                      +|++++||++|+.|.+.|++.            +|+++|++||+|||++|+|++   +|.+.|++|+++|.++|+++||+
T Consensus       197 ~v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~---~v~~~A~~i~~~~~~~~i~~GR~  273 (345)
T 4bbr_M          197 HVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM---QVTTSAEYTAKKCKEIKEIAGKS  273 (345)
T ss_dssp             TCCTTHHHHHHHHHHHCC--------------------------------------------------------------
T ss_pred             CCCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcH---HHHHHHHHHHHHHHhcccccCCC
Confidence            999999999999999999974            788999999999999999987   58999999999999999999999


Q ss_pred             ccceeecc---------cccCHHHHHHHHh----hhhhhhhcchHHHHHhh
Q psy1861         382 PNGLIGKY---------SCDSHVDISRVAG----DDYIKSNELPRVIKECL  419 (661)
Q Consensus       382 P~gIAaAA---------~~rT~~eIa~~ag----tiR~~ykeL~~~~~~~l  419 (661)
                      |.||||||         +++||+||++++|    |||++|+||.+.+++-+
T Consensus       274 P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~rykel~~~~~~l~  324 (345)
T 4bbr_M          274 PITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLV  324 (345)
T ss_dssp             ---------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence            99999999         7899999999998    89999999988876544
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1ngm_B Transcription factor IIIB BRF1 subunit; TFIIIB, TBP, TAF, protein-DNA complex, transcription/DNA complex; 2.95A {Saccharomyces cerevisiae} SCOP: j.104.1.1 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens} Back     alignment and structure
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens} Back     alignment and structure
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens} Back     alignment and structure
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens} Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens} Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A Back     alignment and structure
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 661
d2vgls_142 d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem 3e-24
d2vgls_142 d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem 2e-21
d1aisb295 a.74.1.2 (B:1206-1300) Transcription factor IIB (T 1e-18
d1aisb295 a.74.1.2 (B:1206-1300) Transcription factor IIB (T 2e-05
d1vola2109 a.74.1.2 (A:208-316) Transcription factor IIB (TFI 1e-17
d1vola2109 a.74.1.2 (A:208-316) Transcription factor IIB (TFI 0.001
d1aisb198 a.74.1.2 (B:1108-1205) Transcription factor IIB (T 2e-17
d2vglm2141 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass 2e-17
d2vglm2141 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass 6e-13
d1vola195 a.74.1.2 (A:113-207) Transcription factor IIB (TFI 7e-17
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 0.004
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 95 Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 95 Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Length = 109 Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Length = 109 Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 98 Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Length = 95 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query661
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 99.85
d2vgls_142 Sigma2 adaptin (clathrin coat assembly protein AP1 99.85
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 99.85
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 99.79
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 99.75
d2vglm2141 Mu2 adaptin (clathrin coat assembly protein AP50) 99.58
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 99.28
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 99.24
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 98.57
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 98.54
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 98.21
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 98.2
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 97.99
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 97.22
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 97.03
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 96.97
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 96.95
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 96.91
d2r7ga2142 Retinoblastoma tumor suppressor domains {Human (Ho 95.99
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 94.77
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 92.44
d1pfta_50 Transcription initiation factor TFIIB, N-terminal 90.53
d2vgls_142 Sigma2 adaptin (clathrin coat assembly protein AP1 90.14
d2vglm2141 Mu2 adaptin (clathrin coat assembly protein AP50) 89.61
d1dl6a_58 Transcription initiation factor TFIIB, N-terminal 89.6
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Transcription factor IIB (TFIIB), core domain
domain: Transcription factor IIB (TFIIB), core domain
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=99.85  E-value=1.7e-21  Score=169.93  Aligned_cols=94  Identities=29%  Similarity=0.487  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCcccHHHHHHHhCCCHHHHH
Q psy1861         242 TLDNCKRNISSLCNQLRLNQHCLETSFNLYKMALSRNLTKGRRQILVCAACVYMTCRLEGTSHLLIDFSELLQICIFELG  321 (661)
Q Consensus       242 ~L~~a~~~I~~i~~~L~Lp~~V~e~A~~iyk~a~e~~l~rGR~~~~VaAACLYiACR~~~~PrtLkDIsdv~~Vsv~~Lg  321 (661)
                      +|..|++.|+++|+.|+||+.|.++|..||+++.+.++++||++.+++|||||+|||++++|+|++|||+++++++++|+
T Consensus         1 nL~~a~~~I~~~~~~L~L~~~i~~~A~~i~k~~~~~~~~~g~~~~~iaaA~iY~Acr~~~~~~t~~eIa~~~~is~~ti~   80 (98)
T d1aisb1           1 NLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIG   80 (98)
T ss_dssp             CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSCHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccC
Q psy1861         322 RTYLRLSQALCISI  335 (661)
Q Consensus       322 rtyk~L~k~L~i~~  335 (661)
                      ++|+.|.+.|++.+
T Consensus        81 k~yk~i~~~L~l~~   94 (98)
T d1aisb1          81 RSYRFIARNLNLTP   94 (98)
T ss_dssp             HHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHcCCCc
Confidence            99999999999753
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2r7ga2 a.74.1.3 (A:644-785) Retinoblastoma tumor suppressor domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure