Psyllid ID: psy1869

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
MVQPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDPA
ccccccccccHHHHHHHHHHHHHHccHHHHHHHHccccccEEEEcccccccccccccHHHccHHHHHHHHcccccccEEcccccccccccHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccHHHHHHHHHHHHHHcccEEEccEEEcccccccccccccccccccccccccc
ccccccccccHHHHHHHHHHHHHHccHHHHHHHccccccEccEccccccccccccccHHHHHHHHcHHHHHHHccccEcccccEEccccHHHHHHHHHHcccccHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHccccccccccEEcccHHHHHHHHHHHHHHHHHccEEEEEEEEEEEccccEEccHHHHHHcEEEEEEEE
MVQPVPEYIDFAKEEENILRFWKEHEIFQECLkqskgkprysfydgppfatglphyghILAGAIKDVVTRYahqngfhverrfgwdchglpveFEIDkklgikgpadVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWidfdndyktlYPWYMESIWWVFSELWNKglvyrgvkvmpystacntplsnfesgqnykevvdpa
mvqpvpeyidfakEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTAcntplsnfesgqnykevvdpa
MVQPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDPA
*******YIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPL****************
********IDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYK******
MVQPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDPA
****VPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDPA
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVQPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDPA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query205 2.2.26 [Sep-21-2011]
Q8BU30 1262 Isoleucine--tRNA ligase, yes N/A 1.0 0.162 0.775 4e-99
P41252 1262 Isoleucine--tRNA ligase, yes N/A 1.0 0.162 0.770 1e-98
Q21926 1141 Isoleucine--tRNA ligase, yes N/A 0.995 0.178 0.696 5e-88
Q54YD4 1067 Probable isoleucine--tRNA yes N/A 0.995 0.191 0.661 1e-81
O13651 1064 Isoleucine--tRNA ligase, yes N/A 0.941 0.181 0.709 1e-80
P36422 1081 Isoleucine--tRNA ligase O N/A N/A 0.980 0.185 0.661 8e-80
P09436 1072 Isoleucine--tRNA ligase, yes N/A 0.965 0.184 0.636 2e-74
Q8SQV6 1017 Probable isoleucine--tRNA yes N/A 0.956 0.192 0.602 6e-74
B7XK16 953 Probable isoleucine--tRNA N/A N/A 0.960 0.206 0.614 7e-74
Q9Z972 1043 Isoleucine--tRNA ligase O yes N/A 0.951 0.186 0.610 8e-73
>sp|Q8BU30|SYIC_MOUSE Isoleucine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Iars PE=2 SV=2 Back     alignment and function desciption
 Score =  360 bits (924), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 159/205 (77%), Positives = 181/205 (88%)

Query: 1   MVQPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHIL 60
           MVQ VPE I F  EEE IL FW +H  FQECLKQSK +P+++FYDGPPFATGLPHYGHIL
Sbjct: 1   MVQQVPENISFPAEEEKILEFWSKHNCFQECLKQSKLRPKFTFYDGPPFATGLPHYGHIL 60

Query: 61  AGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLEC 120
           AG IKD+VTRYAHQ+GFHV+RRFGWDCHGLPVE+EIDK LGIKGP DVAKMGIA+YN +C
Sbjct: 61  AGTIKDIVTRYAHQSGFHVDRRFGWDCHGLPVEYEIDKTLGIKGPEDVAKMGIAEYNKQC 120

Query: 121 RKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMP 180
           R IVMRYS+EW+  V R+GRWIDFDNDYKTLYP +MES+WWVF +L++KGLVYRGVKVMP
Sbjct: 121 RAIVMRYSAEWKSTVTRLGRWIDFDNDYKTLYPQFMESVWWVFKQLYDKGLVYRGVKVMP 180

Query: 181 YSTACNTPLSNFESGQNYKEVVDPA 205
           +STAC TPLSNFES QNYK+V DP+
Sbjct: 181 FSTACGTPLSNFESNQNYKDVQDPS 205

Mus musculus (taxid: 10090)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 5
>sp|P41252|SYIC_HUMAN Isoleucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=IARS PE=1 SV=2 Back     alignment and function description
>sp|Q21926|SYIC_CAEEL Isoleucine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=irs-1 PE=3 SV=1 Back     alignment and function description
>sp|Q54YD4|SYIC_DICDI Probable isoleucine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=ileS PE=3 SV=1 Back     alignment and function description
>sp|O13651|SYIC_SCHPO Isoleucine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=irs1 PE=3 SV=1 Back     alignment and function description
>sp|P36422|SYI_TETTH Isoleucine--tRNA ligase OS=Tetrahymena thermophila GN=ILSA PE=3 SV=1 Back     alignment and function description
>sp|P09436|SYIC_YEAST Isoleucine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ILS1 PE=1 SV=1 Back     alignment and function description
>sp|Q8SQV6|SYIC_ENCCU Probable isoleucine--tRNA ligase, cytoplasmic OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU11_1100 PE=3 SV=1 Back     alignment and function description
>sp|B7XK16|SYIC_ENTBH Probable isoleucine--tRNA ligase, cytoplasmic OS=Enterocytozoon bieneusi (strain H348) GN=EBI_22873 PE=3 SV=1 Back     alignment and function description
>sp|Q9Z972|SYI_CHLPN Isoleucine--tRNA ligase OS=Chlamydia pneumoniae GN=ileS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query205
193595368 1238 PREDICTED: isoleucyl-tRNA synthetase, cy 1.0 0.165 0.834 1e-103
115663084 1186 PREDICTED: isoleucine--tRNA ligase, cyto 1.0 0.172 0.8 1e-101
390362711 1102 PREDICTED: LOW QUALITY PROTEIN: isoleuci 0.995 0.185 0.8 1e-100
389612015249 isoleucyl-tRNA synthetase, partial [Papi 0.995 0.819 0.823 1e-99
321472021 1275 hypothetical protein DAPPUDRAFT_316089 [ 1.0 0.160 0.8 3e-99
410919981 1267 PREDICTED: isoleucine--tRNA ligase, cyto 1.0 0.161 0.790 4e-99
348565286 1374 PREDICTED: isoleucyl-tRNA synthetase, cy 1.0 0.149 0.780 9e-99
432857596 1268 PREDICTED: isoleucine--tRNA ligase, cyto 1.0 0.161 0.780 1e-98
357611676 1201 putative isoleucyl tRNA synthetase [Dana 0.995 0.169 0.794 2e-98
395844710 1262 PREDICTED: isoleucine--tRNA ligase, cyto 1.0 0.162 0.780 2e-98
>gi|193595368|ref|XP_001943374.1| PREDICTED: isoleucyl-tRNA synthetase, cytoplasmic-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 171/205 (83%), Positives = 188/205 (91%)

Query: 1   MVQPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHIL 60
           MV+PV EY++F KEEE IL FWKE ++F ECL+QSKGKPR+SFYDGPPFATGLPHYGHIL
Sbjct: 1   MVEPVAEYLNFPKEEEKILEFWKETDVFHECLRQSKGKPRFSFYDGPPFATGLPHYGHIL 60

Query: 61  AGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLEC 120
           AGAIKDVVTRYAHQ G HVERRFGWD HGLPVEFEIDK L IKGP DVAKMGI +YN EC
Sbjct: 61  AGAIKDVVTRYAHQTGHHVERRFGWDTHGLPVEFEIDKLLEIKGPEDVAKMGIDKYNAEC 120

Query: 121 RKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMP 180
           RKIVMRY+S+WE +V R+GRWIDF NDYKTLYPW+MES+WWVFSELWNKG+VYRGVKVMP
Sbjct: 121 RKIVMRYASDWETIVTRLGRWIDFKNDYKTLYPWFMESVWWVFSELWNKGMVYRGVKVMP 180

Query: 181 YSTACNTPLSNFESGQNYKEVVDPA 205
           +STAC+TPLSNFESGQNYKEVVDPA
Sbjct: 181 FSTACSTPLSNFESGQNYKEVVDPA 205

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|115663084|ref|XP_801899.2| PREDICTED: isoleucine--tRNA ligase, cytoplasmic isoform 2 [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|390362711|ref|XP_793858.3| PREDICTED: LOW QUALITY PROTEIN: isoleucine--tRNA ligase, cytoplasmic-like [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|389612015|dbj|BAM19541.1| isoleucyl-tRNA synthetase, partial [Papilio xuthus] Back     alignment and taxonomy information
>gi|321472021|gb|EFX82992.1| hypothetical protein DAPPUDRAFT_316089 [Daphnia pulex] Back     alignment and taxonomy information
>gi|410919981|ref|XP_003973462.1| PREDICTED: isoleucine--tRNA ligase, cytoplasmic-like [Takifugu rubripes] Back     alignment and taxonomy information
>gi|348565286|ref|XP_003468434.1| PREDICTED: isoleucyl-tRNA synthetase, cytoplasmic-like [Cavia porcellus] Back     alignment and taxonomy information
>gi|432857596|ref|XP_004068708.1| PREDICTED: isoleucine--tRNA ligase, cytoplasmic-like [Oryzias latipes] Back     alignment and taxonomy information
>gi|357611676|gb|EHJ67602.1| putative isoleucyl tRNA synthetase [Danaus plexippus] Back     alignment and taxonomy information
>gi|395844710|ref|XP_003795098.1| PREDICTED: isoleucine--tRNA ligase, cytoplasmic [Otolemur garnettii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query205
UNIPROTKB|E1BQH2 1265 IARS "Uncharacterized protein" 1.0 0.162 0.775 1.9e-92
MGI|MGI:2145219 1262 Iars "isoleucine-tRNA syntheta 1.0 0.162 0.775 2.4e-92
UNIPROTKB|F1SUF6 810 LOC100624746 "Uncharacterized 1.0 0.253 0.765 8.1e-92
UNIPROTKB|I3LKK0305 LOC100623684 "Uncharacterized 1.0 0.672 0.765 8.1e-92
UNIPROTKB|F1LS86 1263 Iars "Protein Iars" [Rattus no 1.0 0.162 0.770 8.1e-92
UNIPROTKB|P41252 1262 IARS "Isoleucine--tRNA ligase, 1.0 0.162 0.770 1e-91
UNIPROTKB|Q5TCD1 330 IARS "Isoleucine--tRNA ligase, 1.0 0.621 0.770 1e-91
UNIPROTKB|F1PLJ9 1262 IARS "Uncharacterized protein" 1.0 0.162 0.770 1.7e-91
UNIPROTKB|A7MBC5 1262 IARS "IARS protein" [Bos tauru 1.0 0.162 0.756 2.1e-91
ZFIN|ZDB-GENE-030131-6325 1271 iars "isoleucyl-tRNA synthetas 1.0 0.161 0.751 3e-91
UNIPROTKB|E1BQH2 IARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 906 (324.0 bits), Expect = 1.9e-92, Sum P(2) = 1.9e-92
 Identities = 159/205 (77%), Positives = 180/205 (87%)

Query:     1 MVQPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHIL 60
             MVQ VPE I F  EEE IL  WK+   FQECLKQSK +PR++FYDGPPFATGLPHYGHIL
Sbjct:     1 MVQQVPENISFPNEEEKILELWKKLNCFQECLKQSKNRPRFNFYDGPPFATGLPHYGHIL 60

Query:    61 AGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLEC 120
             AG IKD+VTR+AHQ+GFHV+RRFGWDCHGLPVE+EIDK LGIKGP DVAKMGIA+YN +C
Sbjct:    61 AGTIKDIVTRFAHQSGFHVDRRFGWDCHGLPVEYEIDKTLGIKGPEDVAKMGIAEYNNQC 120

Query:   121 RKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMP 180
             R IVMRYS EWE  V R+GRWIDF+NDYKTLYP +MES+WWVF +L++KGLVYRGVKVMP
Sbjct:   121 RGIVMRYSKEWEFNVTRLGRWIDFENDYKTLYPEFMESVWWVFKQLYDKGLVYRGVKVMP 180

Query:   181 YSTACNTPLSNFESGQNYKEVVDPA 205
             +STACNTPLSNFES QNYK+V DP+
Sbjct:   181 FSTACNTPLSNFESHQNYKDVQDPS 205
GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA
GO:0004822 "isoleucine-tRNA ligase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0006428 "isoleucyl-tRNA aminoacylation" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
MGI|MGI:2145219 Iars "isoleucine-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SUF6 LOC100624746 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LKK0 LOC100623684 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1LS86 Iars "Protein Iars" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P41252 IARS "Isoleucine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5TCD1 IARS "Isoleucine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PLJ9 IARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A7MBC5 IARS "IARS protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-6325 iars "isoleucyl-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q92H19SYI_RICCN6, ., 1, ., 1, ., 50.52700.98040.1840yesN/A
Q73JB2SYI_TREDE6, ., 1, ., 1, ., 50.52421.00.1863yesN/A
O13651SYIC_SCHPO6, ., 1, ., 1, ., 50.70980.94140.1813yesN/A
Q6MKX0SYI_BDEBA6, ., 1, ., 1, ., 50.59390.95600.1856yesN/A
Q3YRX3SYI_EHRCJ6, ., 1, ., 1, ., 50.56750.90240.1651yesN/A
B5RN32SYI_BORDL6, ., 1, ., 1, ., 50.50481.00.1963yesN/A
A1R0Q9SYI_BORT96, ., 1, ., 1, ., 50.51941.00.1963yesN/A
B7J0S6SYI_BORBZ6, ., 1, ., 1, ., 50.51451.00.1967yesN/A
Q5FH91SYI_EHRRG6, ., 1, ., 1, ., 50.54590.90240.1654yesN/A
Q9ZCU4SYI_RICPR6, ., 1, ., 1, ., 50.52210.98040.1850yesN/A
Q8BU30SYIC_MOUSE6, ., 1, ., 1, ., 50.77561.00.1624yesN/A
Q1RIY1SYI_RICBR6, ., 1, ., 1, ., 50.52700.98040.1814yesN/A
B0B9C6SYI_CHLT26, ., 1, ., 1, ., 50.59890.96090.1901yesN/A
Q73HW7SYI_WOLPM6, ., 1, ., 1, ., 50.52020.95600.1764yesN/A
Q6MDY1SYI_PARUW6, ., 1, ., 1, ., 50.57430.95120.1878yesN/A
Q65ZU1SYI_BORGA6, ., 1, ., 1, ., 50.50971.00.1967yesN/A
Q5GSS3SYI_WOLTR6, ., 1, ., 1, ., 50.54050.90240.1631yesN/A
B0BB05SYI_CHLTB6, ., 1, ., 1, ., 50.59890.96090.1901yesN/A
A8GPA1SYI_RICAH6, ., 1, ., 1, ., 50.51230.98040.1822yesN/A
A8GW18SYI_RICB86, ., 1, ., 1, ., 50.52700.98040.1814yesN/A
O84022SYI_CHLTR6, ., 1, ., 1, ., 50.59890.96090.1901yesN/A
Q8SQV6SYIC_ENCCU6, ., 1, ., 1, ., 50.60200.95600.1927yesN/A
P09436SYIC_YEAST6, ., 1, ., 1, ., 50.63630.96580.1847yesN/A
Q3KN03SYI_CHLTA6, ., 1, ., 1, ., 50.59890.96090.1901yesN/A
Q8FNV0SYI_COREF6, ., 1, ., 1, ., 50.51770.95120.1850yesN/A
Q5HB43SYI_EHRRW6, ., 1, ., 1, ., 50.55130.90240.1656yesN/A
Q68WC2SYI_RICTY6, ., 1, ., 1, ., 50.52700.98040.1850yesN/A
Q9Z972SYI_CHLPN6, ., 1, ., 1, ., 50.61020.95120.1869yesN/A
Q21926SYIC_CAEEL6, ., 1, ., 1, ., 50.69600.99510.1787yesN/A
A8EY49SYI_RICCK6, ., 1, ., 1, ., 50.50240.98040.1862yesN/A
Q0SM18SYI_BORAP6, ., 1, ., 1, ., 50.51451.00.1967yesN/A
Q4UMD8SYI_RICFE6, ., 1, ., 1, ., 50.52700.98040.1837yesN/A
P41252SYIC_HUMAN6, ., 1, ., 1, ., 50.77071.00.1624yesN/A
O51773SYI_BORBU6, ., 1, ., 1, ., 50.51451.00.1967yesN/A
C4K2T0SYI_RICPU6, ., 1, ., 1, ., 50.52700.98040.1840yesN/A
C3PP60SYI_RICAE6, ., 1, ., 1, ., 50.53030.95600.1794yesN/A
Q5L5L0SYI_CHLAB6, ., 1, ., 1, ., 50.60510.95120.1869yesN/A
Q9PL20SYI_CHLMU6, ., 1, ., 1, ., 50.60400.96090.1901yesN/A
Q822L8SYI_CHLCV6, ., 1, ., 1, ., 50.61530.95120.1869yesN/A
Q54YD4SYIC_DICDI6, ., 1, ., 1, ., 50.66170.99510.1911yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query205
PLN02882 1159 PLN02882, PLN02882, aminoacyl-tRNA ligase 1e-129
PRK06039 975 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewe 1e-110
COG0060 933 COG0060, IleS, Isoleucyl-tRNA synthetase [Translat 6e-91
PTZ00427 1205 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putati 1e-89
pfam00133 606 pfam00133, tRNA-synt_1, tRNA synthetases class I ( 2e-88
cd00818 338 cd00818, IleRS_core, catalytic core domain of isol 1e-85
TIGR00392 861 TIGR00392, ileS, isoleucyl-tRNA synthetase 2e-79
PRK13804 961 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisi 6e-34
cd00668 312 cd00668, Ile_Leu_Val_MetRS_core, catalytic core do 2e-33
PRK05743 912 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewe 3e-32
TIGR00422 861 TIGR00422, valS, valyl-tRNA synthetase 3e-25
PLN02843 974 PLN02843, PLN02843, isoleucyl-tRNA synthetase 1e-24
COG0525 877 COG0525, ValS, Valyl-tRNA synthetase [Translation, 1e-24
cd00817 382 cd00817, ValRS_core, catalytic core domain of valy 2e-24
PRK13208 800 PRK13208, valS, valyl-tRNA synthetase; Reviewed 2e-23
TIGR00396 842 TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba 6e-16
COG0495 814 COG0495, LeuS, Leucyl-tRNA synthetase [Translation 6e-15
PLN02563 963 PLN02563, PLN02563, aminoacyl-tRNA ligase 8e-13
cd00812 314 cd00812, LeuRS_core, catalytic core domain of leuc 1e-12
pfam09334 388 pfam09334, tRNA-synt_1g, tRNA synthetases class I 3e-11
TIGR00395 938 TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch 4e-10
PRK14900 1052 PRK14900, valS, valyl-tRNA synthetase; Provisional 2e-09
COG0143 558 COG0143, MetG, Methionyl-tRNA synthetase [Translat 2e-09
cd00814 319 cd00814, MetRS_core, catalytic core domain of meth 4e-09
TIGR00398 530 TIGR00398, metG, methionyl-tRNA synthetase 3e-07
PLN02943 958 PLN02943, PLN02943, aminoacyl-tRNA ligase 8e-07
PRK12268 556 PRK12268, PRK12268, methionyl-tRNA synthetase; Rev 9e-07
PLN02381 1066 PLN02381, PLN02381, valyl-tRNA synthetase 1e-06
PRK00390 805 PRK00390, leuS, leucyl-tRNA synthetase; Validated 1e-06
PTZ00419 995 PTZ00419, PTZ00419, valyl-tRNA synthetase-like pro 1e-05
PRK12300 897 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed 8e-05
PRK11893 511 PRK11893, PRK11893, methionyl-tRNA synthetase; Rev 2e-04
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase Back     alignment and domain information 
 Score =  391 bits (1006), Expect = e-129
 Identities = 138/196 (70%), Positives = 156/196 (79%)

Query: 10  DFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVT 69
            F K+EE IL  W E + F+  LK+++G P Y FYDGPPFATGLPHYGHILAG IKD+VT
Sbjct: 9   SFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVT 68

Query: 70  RYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSS 129
           RY    G HV RRFGWDCHGLPVE+EIDKKLGIK   DV KMGI +YN ECR IV RYS 
Sbjct: 69  RYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRYSK 128

Query: 130 EWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPL 189
           EWEK V R GRWIDF+NDYKT+ P +MES+WWVF +L+ KGLVY+G KVMPYSTAC TPL
Sbjct: 129 EWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMPYSTACKTPL 188

Query: 190 SNFESGQNYKEVVDPA 205
           SNFE+G NYK+V DPA
Sbjct: 189 SNFEAGLNYKDVSDPA 204

Length = 1159
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V) Back     alignment and domain information
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) Back     alignment and domain information
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 205
PRK06039 975 ileS isoleucyl-tRNA synthetase; Reviewed 100.0
PTZ00427 1205 isoleucine-tRNA ligase, putative; Provisional 100.0
PLN02882 1159 aminoacyl-tRNA ligase 100.0
COG0060 933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 100.0
TIGR00392 861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 100.0
PRK13804 961 ileS isoleucyl-tRNA synthetase; Provisional 100.0
PRK13208 800 valS valyl-tRNA synthetase; Reviewed 100.0
PRK05743 912 ileS isoleucyl-tRNA synthetase; Reviewed 100.0
PLN02381 1066 valyl-tRNA synthetase 100.0
TIGR00422 861 valS valyl-tRNA synthetase. The valyl-tRNA synthet 100.0
PTZ00419 995 valyl-tRNA synthetase-like protein; Provisional 100.0
PRK05729 874 valS valyl-tRNA synthetase; Reviewed 100.0
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 100.0
PF00133 601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 100.0
PLN02943 958 aminoacyl-tRNA ligase 100.0
COG0525 877 ValS Valyl-tRNA synthetase [Translation, ribosomal 100.0
PLN02843 974 isoleucyl-tRNA synthetase 100.0
COG0495 814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 100.0
PLN02563 963 aminoacyl-tRNA ligase 100.0
PLN02959 1084 aminoacyl-tRNA ligase 100.0
TIGR00396 842 leuS_bact leucyl-tRNA synthetase, eubacterial and 100.0
TIGR00395 938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 100.0
PRK00390 805 leuS leucyl-tRNA synthetase; Validated 100.0
KOG0434|consensus 1070 100.0
cd00817 382 ValRS_core catalytic core domain of valyl-tRNA syn 100.0
KOG0432|consensus 995 100.0
KOG0435|consensus 876 100.0
cd00818 338 IleRS_core catalytic core domain of isoleucyl-tRNA 100.0
COG0143 558 MetG Methionyl-tRNA synthetase [Translation, ribos 100.0
PLN02224 616 methionine-tRNA ligase 100.0
PLN02610 801 probable methionyl-tRNA synthetase 100.0
cd00814 319 MetRS_core catalytic core domain of methioninyl-tR 100.0
PF09334 391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 100.0
PRK12268 556 methionyl-tRNA synthetase; Reviewed 100.0
cd00668 312 Ile_Leu_Val_MetRS_core catalytic core domain of is 100.0
PRK00133 673 metG methionyl-tRNA synthetase; Reviewed 100.0
PRK11893 511 methionyl-tRNA synthetase; Reviewed 100.0
PRK12267 648 methionyl-tRNA synthetase; Reviewed 100.0
TIGR00398 530 metG methionyl-tRNA synthetase. The methionyl-tRNA 99.98
cd00812 314 LeuRS_core catalytic core domain of leucyl-tRNA sy 99.97
PRK12300 897 leuS leucyl-tRNA synthetase; Reviewed 99.97
KOG0433|consensus 937 99.96
KOG0437|consensus 1080 99.95
KOG0436|consensus 578 99.94
cd00671212 ArgRS_core catalytic core domain of arginyl-tRNA s 99.94
PRK00260 463 cysS cysteinyl-tRNA synthetase; Validated 99.92
TIGR00435 465 cysS cysteinyl-tRNA synthetase. This model finds t 99.92
PRK01611 507 argS arginyl-tRNA synthetase; Reviewed 99.91
PLN02946 557 cysteine-tRNA ligase 99.9
PRK12418 384 cysteinyl-tRNA synthetase; Provisional 99.9
TIGR03447 411 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- 99.9
PRK14536 490 cysS cysteinyl-tRNA synthetase; Provisional 99.89
PRK14535 699 cysS cysteinyl-tRNA synthetase; Provisional 99.88
PTZ00399 651 cysteinyl-tRNA-synthetase; Provisional 99.87
PRK14534 481 cysS cysteinyl-tRNA synthetase; Provisional 99.87
cd00672213 CysRS_core catalytic core domain of cysteinyl tRNA 99.84
COG0018 577 ArgS Arginyl-tRNA synthetase [Translation, ribosom 99.83
PF01406 300 tRNA-synt_1e: tRNA synthetases class I (C) catalyt 99.83
PF00750 354 tRNA-synt_1d: tRNA synthetases class I (R); InterP 99.82
TIGR00456 566 argS arginyl-tRNA synthetase. This model recognize 99.79
COG0215 464 CysS Cysteinyl-tRNA synthetase [Translation, ribos 99.78
KOG1247|consensus 567 99.78
PRK12451 562 arginyl-tRNA synthetase; Reviewed 99.78
PLN02286 576 arginine-tRNA ligase 99.75
cd00674 353 LysRS_core_class_I catalytic core domain of class 99.74
cd00802143 class_I_aaRS_core catalytic core domain of class I 99.67
KOG2007|consensus 586 99.63
PRK00750 510 lysK lysyl-tRNA synthetase; Reviewed 99.59
TIGR00467 515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 99.39
cd09287 240 GluRS_non_core catalytic core domain of non-discri 99.26
PRK04156 567 gltX glutamyl-tRNA synthetase; Provisional 99.23
TIGR00463 560 gltX_arch glutamyl-tRNA synthetase, archaeal and e 99.06
PRK12558 445 glutamyl-tRNA synthetase; Provisional 99.04
COG0008 472 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr 98.97
cd00807 238 GlnRS_core catalytic core domain of glutaminyl-tRN 98.97
TIGR03838 272 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe 98.97
PLN03233 523 putative glutamate-tRNA ligase; Provisional 98.96
PF00749 314 tRNA-synt_1c: tRNA synthetases class I (E and Q), 98.93
KOG4426|consensus 656 98.92
PTZ00402 601 glutamyl-tRNA synthetase; Provisional 98.91
PTZ00437 574 glutaminyl-tRNA synthetase; Provisional 98.88
TIGR00440 522 glnS glutaminyl-tRNA synthetase. This protein is a 98.88
PRK05710 299 glutamyl-Q tRNA(Asp) synthetase; Reviewed 98.86
PLN02907 722 glutamate-tRNA ligase 98.86
PRK12410 433 glutamylglutaminyl-tRNA synthetase; Provisional 98.85
PLN02859 788 glutamine-tRNA ligase 98.83
TIGR00464 470 gltX_bact glutamyl-tRNA synthetase, bacterial fami 98.82
PRK14895 513 gltX glutamyl-tRNA synthetase; Provisional 98.81
PRK05347 554 glutaminyl-tRNA synthetase; Provisional 98.76
cd00418 230 GlxRS_core catalytic core domain of glutamyl-tRNA 98.75
PLN02627 535 glutamyl-tRNA synthetase 98.73
PRK14703 771 glutaminyl-tRNA synthetase/YqeY domain fusion prot 98.71
PRK01406 476 gltX glutamyl-tRNA synthetase; Reviewed 98.7
cd00808 239 GluRS_core catalytic core domain of discriminating 98.68
KOG1195|consensus 567 98.66
COG1384 521 LysS Lysyl-tRNA synthetase (class I) [Translation, 98.36
KOG1147|consensus 712 98.06
PF01921 360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 98.06
KOG1148|consensus 764 97.99
KOG1149|consensus 524 97.05
PLN02486 383 aminoacyl-tRNA ligase 94.1
cd00806 280 TrpRS_core catalytic core domain of tryptophanyl-t 94.06
PRK12285 368 tryptophanyl-tRNA synthetase; Reviewed 93.12
PRK12284 431 tryptophanyl-tRNA synthetase; Reviewed 90.93
cd00805 269 TyrRS_core catalytic core domain of tyrosinyl-tRNA 90.34
PF01927147 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 T 88.89
cd00395 273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 87.91
PF00579 292 tRNA-synt_1b: tRNA synthetases class I (W and Y); 87.9
PRK13354 410 tyrosyl-tRNA synthetase; Provisional 87.29
TIGR00234 377 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy 86.85
PRK08560 329 tyrosyl-tRNA synthetase; Validated 86.25
COG0162 401 TyrS Tyrosyl-tRNA synthetase [Translation, ribosom 85.9
PTZ00126 383 tyrosyl-tRNA synthetase; Provisional 84.67
PRK00927 333 tryptophanyl-tRNA synthetase; Reviewed 84.25
PRK05912 408 tyrosyl-tRNA synthetase; Validated 83.79
TIGR00233 328 trpS tryptophanyl-tRNA synthetase. This model repr 82.83
PRK12556 332 tryptophanyl-tRNA synthetase; Provisional 81.06
PLN02886 389 aminoacyl-tRNA ligase 80.93
COG1656165 Uncharacterized conserved protein [Function unknow 80.14
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=1.3e-52  Score=402.93  Aligned_cols=205  Identities=53%  Similarity=1.100  Sum_probs=196.9

Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccc
Q psy1869           1 MVQPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVE   80 (205)
Q Consensus         1 ~~~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~   80 (205)
                      ||.+++.+||+.++|++|+++|++.++|++..+.+.++++|++++|||||||.||+||+++++++|+++||.||+||+|.
T Consensus         3 ~~~~~~~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~   82 (975)
T PRK06039          3 MYPEVDSQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVE   82 (975)
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHCCCcccCccccCCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCccc
Confidence            68889999999999999999999999999876655678899999999999999999999999999999999999999999


Q ss_pred             cccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHH
Q psy1869          81 RRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIW  160 (205)
Q Consensus        81 ~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~  160 (205)
                      +++||||||+||+..|++.+|+....++.++++++|++.|++++.++.+.|++++++||+|+||++.|.|+++.|.+.++
T Consensus        83 ~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~  162 (975)
T PRK06039         83 RRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVW  162 (975)
T ss_pred             CcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHH
Confidence            99999999999999999988987667788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCeeecCccccccCCCCCccCccccccccccccCCC
Q psy1869         161 WVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDPA  205 (205)
Q Consensus       161 ~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~~~~s  205 (205)
                      ++|.+|+++|+||++.++|+|||+|+|+||++||+++|+++.+||
T Consensus       163 ~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~  207 (975)
T PRK06039        163 WALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVKDPS  207 (975)
T ss_pred             HHHHHHHHCCCEEecceeeeecCCCCCCccHHHHhhcccccCCce
Confidence            999999999999999999999999999999999987899999886

>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK13208 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02381 valyl-tRNA synthetase Back     alignment and domain information
>TIGR00422 valS valyl-tRNA synthetase Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>KOG0434|consensus Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>KOG0432|consensus Back     alignment and domain information
>KOG0435|consensus Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG0433|consensus Back     alignment and domain information
>KOG0437|consensus Back     alignment and domain information
>KOG0436|consensus Back     alignment and domain information
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>PRK12418 cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase Back     alignment and domain information
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional Back     alignment and domain information
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1247|consensus Back     alignment and domain information
>PRK12451 arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02286 arginine-tRNA ligase Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>KOG2007|consensus Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family Back     alignment and domain information
>PRK12558 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase Back     alignment and domain information
>PLN03233 putative glutamate-tRNA ligase; Provisional Back     alignment and domain information
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG4426|consensus Back     alignment and domain information
>PTZ00402 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00437 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00440 glnS glutaminyl-tRNA synthetase Back     alignment and domain information
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed Back     alignment and domain information
>PLN02907 glutamate-tRNA ligase Back     alignment and domain information
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02859 glutamine-tRNA ligase Back     alignment and domain information
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family Back     alignment and domain information
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05347 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>PLN02627 glutamyl-tRNA synthetase Back     alignment and domain information
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>KOG1195|consensus Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1147|consensus Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG1148|consensus Back     alignment and domain information
>KOG1149|consensus Back     alignment and domain information
>PLN02486 aminoacyl-tRNA ligase Back     alignment and domain information
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00234 tyrS tyrosyl-tRNA synthetase Back     alignment and domain information
>PRK08560 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00126 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK05912 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00233 trpS tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK12556 tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02886 aminoacyl-tRNA ligase Back     alignment and domain information
>COG1656 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query205
1jzq_A 821 Isoleucyl-Trna Synthetase Complexed With Isoleucyl- 2e-54
1qu2_A 917 Insights Into Editing From An Ile-Trna Synthetase S 2e-24
1obh_A 878 Leucyl-Trna Synthetase From Thermus Thermophilus Co 2e-11
2v0c_A 878 Leucyl-Trna Synthetase From Thermus Thermophilus Co 2e-11
1gax_A 862 Crystal Structure Of Thermus Thermophilus Valyl-Trn 2e-09
4aq7_A 880 Ternary Complex Of E. Coli Leucyl-Trna Synthetase, 1e-08
3ziu_A 637 Crystal Structure Of Mycoplasma Mobile Leucyl-trna 1e-07
1wkb_A 810 Crystal Structure Of Leucyl-Trna Synthetase From Th 2e-07
1wz2_A 967 The Crystal Structure Of Leucyl-Trna Synthetase And 4e-07
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl- Adenylate Analogue Length = 821 Back     alignment and structure 
Iteration: 1

 Score =  208 bits (530), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 94/196 (47%), Positives = 127/196 (64%)
Query: 10  DFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVT 69
           +F K EE +L FWK  +IFQ+ ++  KG PRY+ Y+GPP A GLPH GH  A + KD+  
Sbjct: 9   NFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFP 68
Query: 70  RYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSS 129
           RY    G++  RR GWD HGLPVE E++KKLG+K   ++   GI ++N  CR+ V  Y  
Sbjct: 69  RYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEK 128
Query: 130 EWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPL 189
           EWE   +RI  W+D ++ Y TL P Y+ESIWW    L+++GL+YR  KV+PY   C TPL
Sbjct: 129 EWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPL 188
Query: 190 SNFESGQNYKEVVDPA 205
           S+ E    YKE+ DP+
Sbjct: 189 SSHEVALGYKEIQDPS 204
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase Structure With Trna(Ile) And Mupirocin Length = 917 Back     alignment and structure
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Pre-Transfer Editing Substrate Analogue In Both Synthetic Active Site And Editing Site Length = 878 Back     alignment and structure
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Sulphamoyl Analogue Of Leucyl-Adenylate In The Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3- Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The Editing Site Length = 878 Back     alignment and structure
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna Synthetase Complexed With Trna(Val) And Valyl-Adenylate Analogue Length = 862 Back     alignment and structure
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase, Trna(Leu) And Leucyl-Adenylate Analogue In The Aminoacylation Conformation Length = 880 Back     alignment and structure
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna Synthetase With Leu-ams In The Active Site Length = 637 Back     alignment and structure
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The Archaeon Pyrococcus Horikoshii Reveals A Novel Editing Domain Orientation Length = 810 Back     alignment and structure
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And Trna(Leucine) Complex Length = 967 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query205
1ile_A 821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 1e-127
1wz2_A 967 Leucyl-tRNA synthetase; ligase, riken structural g 1e-57
1wkb_A 810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 6e-53
1ffy_A 917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 4e-34
2v0c_A 878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 4e-10
1gax_A 862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 3e-08
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 6e-08
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 2e-06
3h99_A 560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 1e-05
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 Back     alignment and structure
 Score =  375 bits (965), Expect = e-127
 Identities = 97/205 (47%), Positives = 131/205 (63%), Gaps = 1/205 (0%)

Query: 1   MVQPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHIL 60
           M + V E  +F K EE +L FWK  +IFQ+ ++  KG PRY+ Y+GPP A GLPH GH  
Sbjct: 1   MFKEVGEP-NFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQ 59

Query: 61  AGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLEC 120
           A + KD+  RY    G++  RR GWD HGLPVE E++KKLG+K   ++   GI ++N  C
Sbjct: 60  ARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQAC 119

Query: 121 RKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMP 180
           R+ V  Y  EWE   +RI  W+D ++ Y TL P Y+ESIWW    L+++GL+YR  KV+P
Sbjct: 120 RESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVP 179

Query: 181 YSTACNTPLSNFESGQNYKEVVDPA 205
           Y   C TPLS+ E    YKE+ DP+
Sbjct: 180 YCPRCGTPLSSHEVALGYKEIQDPS 204
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Length = 917 Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Length = 880 Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query205
1ile_A 821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 100.0
1ffy_A 917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 100.0
1gax_A 862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 100.0
1wz2_A 967 Leucyl-tRNA synthetase; ligase, riken structural g 100.0
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 100.0
1wkb_A 810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 100.0
2v0c_A 878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 100.0
3u1f_A 542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 100.0
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 100.0
3h99_A 560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 100.0
2x1l_A 524 Methionyl-tRNA synthetase; nucleotide-binding, pro 100.0
2csx_A 497 Methionyl-tRNA synthetase; ligase, riken structura 100.0
3kfl_A 564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 100.0
4dlp_A 536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 100.0
2d5b_A 500 Methionyl-tRNA synthetase; rossmann fold, class 1A 100.0
3tqo_A 462 Cysteinyl-tRNA synthetase; protein synthesis, liga 99.94
3c8z_A 414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 99.93
3sp1_A 501 Cysteinyl-tRNA synthetase; structural genomics, se 99.92
1li5_A 461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 99.92
2zue_A 629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 99.85
1f7u_A 607 Arginyl-tRNA synthetase; RNA-protein complex, amin 99.84
3fnr_A 464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 99.84
1iq0_A 592 Arginyl-tRNA synthetase; riken structural genomics 99.84
1irx_A 523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 99.78
1nzj_A 298 Hypothetical protein YADB; Zn cluster, glutamyl T- 99.24
2o5r_A 481 Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g 99.2
3aii_A 553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 99.17
1qtq_A 553 GLNRS, protein (glutaminyl-tRNA synthetase); gluta 99.08
2hz7_A 851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 99.06
2cfo_A 492 Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s 99.04
3al0_C 592 Glutamyl-tRNA(Gln) amidotransferase subunit C, GL 99.01
4g6z_A 490 Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, 98.93
3afh_A 488 Glutamyl-tRNA synthetase 2; protein-substrate comp 98.86
4gri_A 512 Glutamate--tRNA ligase; structural genomics, seatt 98.84
1j09_A 468 Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r 98.81
2ja2_A 498 Glutamyl-tRNA synthetase; non-discriminating gluta 98.77
2dlc_X 394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 96.57
2cyb_A 323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 96.03
1n3l_A 372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 95.44
3a04_A 372 Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR 94.51
2cya_A 364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 92.62
3tzl_A 322 Tryptophanyl-tRNA synthetase; structural genomics, 92.13
2j5b_A 348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 91.9
2g36_A 340 Tryptophanyl-tRNA synthetase; TM0492, structural g 91.86
3jxe_A 392 Tryptophanyl-tRNA synthetase; adenosine triphospha 91.77
2el7_A 337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 91.48
2zp1_A 314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 90.21
1i6k_A 328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 90.06
3hzr_A 386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 89.69
3vgj_A 373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 89.52
2pid_A 356 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 88.18
2yxn_A 322 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 87.32
2cyc_A 375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 87.06
3prh_A 388 Tryptophanyl-tRNA synthetase; TRPRS, protein biosy 86.64
2yy5_A 348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 86.58
2jan_A 432 Tyrosyl-tRNA synthetase; protein biosynthesis, ami 86.16
1y42_X 392 Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR 86.03
3kp1_E121 D-ornithine aminomutase S component; 5 aminomutase 85.83
1jil_A 420 Tyrrs, tyrosyl-tRNA synthetase; truncation, based 85.4
1yi8_B 351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 85.24
2ip1_A 432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 85.1
3sz3_A 341 Tryptophanyl-tRNA synthetase; structural genomics, 85.04
2ts1_A 419 Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 84.7
1r6u_A 437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 83.65
3p0j_A 690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 83.1
3hv0_A 393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 82.92
1r6t_A 477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 82.82
3tze_A 406 Tryptophanyl-tRNA synthetase; structural genomics, 82.63
3i05_A 395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 81.65
1h3f_A 432 Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy 81.21
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
Probab=100.00  E-value=2.8e-51  Score=387.79  Aligned_cols=203  Identities=47%  Similarity=0.973  Sum_probs=192.3

Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccc
Q psy1869           1 MVQPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVE   80 (205)
Q Consensus         1 ~~~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~   80 (205)
                      ||+++ ++|||.++|++|+++|++.++|+...+.+.++++|++++|||||||.|||||+++++++|+++||+||+|++|.
T Consensus         1 ~~~~~-~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~   79 (821)
T 1ile_A            1 MFKEV-GEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAP   79 (821)
T ss_dssp             CCCCC-CCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCC
T ss_pred             CCccc-cCCCHHHHHHHHHHHHHHCCCcccChhhcCCCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCccc
Confidence            78999 89999999999999999999999887656788999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHH
Q psy1869          81 RRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIW  160 (205)
Q Consensus        81 ~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~  160 (205)
                      +++|||+||+||+.+|++.+|..+...+.+++.++|.+.|++++.++.+.+++++++||+++|||+++.|+++.|.+.++
T Consensus        80 ~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~  159 (821)
T 1ile_A           80 RRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIW  159 (821)
T ss_dssp             CEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHH
T ss_pred             ccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHH
Confidence            99999999999999999988886556677889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCeeecCccccccCCCCCccCccccccccccccCC
Q psy1869         161 WVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDP  204 (205)
Q Consensus       161 ~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~~~~  204 (205)
                      ++|.+|+++|+||++.++|+|||.|+|+|||+||+.+|+++.+|
T Consensus       160 ~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~~~  203 (821)
T 1ile_A          160 WSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQDP  203 (821)
T ss_dssp             HHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEEEE
T ss_pred             HHHHHHHHcCCeeecCcceEecCCCCCcccHhHhhcCcccccCc
Confidence            99999999999999999999999999999999996458887665
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Back     alignment and structure
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Back     alignment and structure
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Back     alignment and structure
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} Back     alignment and structure
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Back     alignment and structure
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} Back     alignment and structure
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Back     alignment and structure
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Back     alignment and structure
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Back     alignment and structure
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Back     alignment and structure
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* Back     alignment and structure
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Back     alignment and structure
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Back     alignment and structure
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Back     alignment and structure
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E* Back     alignment and structure
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Back     alignment and structure
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Back     alignment and structure
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 Back     alignment and structure
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 205
d1ilea3 452 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe 2e-44
d1h3na3 494 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas 8e-38
d1ffya3 450 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe 2e-34
d1ivsa4 425 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase 2e-33
d1pfva2 350 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe 1e-17
d1rqga2 361 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe 2e-11
d2d5ba2 348 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR 2e-11
d1irxa2 317 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { 1e-05
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Thermus thermophilus [TaxId: 274]

 Score =  151 bits (381), Expect = 2e-44
 Identities = 87/186 (46%), Positives = 118/186 (63%), Gaps = 1/186 (0%)

Query: 1   MVQPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHIL 60
           M + V E  +F K EE +L FWK  +IFQ+ ++  KG PRY+ Y+GPP A GLPH GH  
Sbjct: 1   MFKEVGEP-NFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQ 59

Query: 61  AGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLEC 120
           A + KD+  RY    G++  RR GWD HGLPVE E++KKLG+K   ++   GI ++N  C
Sbjct: 60  ARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQAC 119

Query: 121 RKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMP 180
           R+ V  Y  EWE   +RI  W+D ++ Y TL P Y+ESIWW    L+++GL+YR  KV+P
Sbjct: 120 RESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVP 179

Query: 181 YSTACN 186
           Y   C 
Sbjct: 180 YCPRCG 185
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query205
d1ffya3 450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 100.0
d1h3na3 494 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 100.0
d1ilea3 452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 100.0
d1ivsa4 425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 100.0
d1pfva2 350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 100.0
d2d5ba2 348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 99.97
d1rqga2 361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 99.96
d1li5a2 315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 99.87
d1f7ua2 348 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 99.83
d1iq0a2 370 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 99.75
d1irxa2 317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 99.69
d1j09a2 305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 99.08
d1nzja_ 286 Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c 98.96
d1gtra2 331 Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co 98.94
d1n3la_ 339 Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie 95.72
d1h3fa1 343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 93.25
d1j1ua_ 306 Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc 92.63
d1r6ta2 386 Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo 90.85
d1jila_ 323 Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au 90.19
d2ts1a_ 319 Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth 85.17
d1i6la_ 326 Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste 81.0
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=8.1e-48  Score=340.59  Aligned_cols=188  Identities=31%  Similarity=0.594  Sum_probs=178.6

Q ss_pred             CCCCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccc
Q psy1869           3 QPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERR   82 (205)
Q Consensus         3 ~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~   82 (205)
                      +.||+|+|+.++|++|+++|++.++|++..+.+.++++|+|++|||||||.|||||+++++++||++||+||+|++|+++
T Consensus        12 t~f~~~~~~~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~~~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~rm~G~~V~~~   91 (450)
T d1ffya3          12 TDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYV   91 (450)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCC
T ss_pred             CCCCCCCChHHHHHHHHHHHHHCCCccccccccCCCCcEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCccccc
Confidence            35899999999999999999999999998887788899999999999999999999999999999999999999999999


Q ss_pred             cccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHH
Q psy1869          83 FGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWV  162 (205)
Q Consensus        83 ~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~  162 (205)
                      +|||+||+||+.++.+. +..    ..+.+.++|.+.|++++.++++.+.+++++||+++||+..+.|+++.|.+.++++
T Consensus        92 ~G~D~~G~pie~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~v~~~  166 (450)
T d1ffya3          92 PGWDTHGLPIEQALTKK-GVD----RKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRI  166 (450)
T ss_dssp             CEEBCCSHHHHHHHHHH-TCC----STTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHH
T ss_pred             cccccCCcHHHHHHHhh-CCc----cccccHHHHhhhcchhhhhhhhhHHHHHHHHhhhcccccccccccHHHHHHHHHH
Confidence            99999999999999887 442    2367889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCeeecCccccccCCCCCccCccccc
Q psy1869         163 FSELWNKGLVYRGVKVMPYSTACNTPLSNFESG  195 (205)
Q Consensus       163 ~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~  195 (205)
                      |.+|.++|+||++.++|+|||+|+++++++|++
T Consensus       167 f~~l~~~G~iy~~~~~v~~~p~~~~~~~~~e~~  199 (450)
T d1ffya3         167 FGEMADKGLIYKGKKPVYWSPSSESSLAEAEIE  199 (450)
T ss_dssp             HHHHHHTTCEEEEEEEEEEETTTTEECCGGGEE
T ss_pred             HHHHHHcCCeeccccccccccccCccccccccc
Confidence            999999999999999999999999999999995
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Back     information, alignment and structure
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure