Psyllid ID: psy1873

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHcccccccccccccccEEEEEEEccEEEEEEEEEcccccccccccHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHccccEEEcccccccc
Secondary Structure Prediction (SSPRO)
EEcccccHHHHHHHHHHcccccccccccEEEEEEEEEEccEEEEEEEEEEcccccccHHHHHHHccccEEEEEEEcccHHHHHHHccHHHHHHHHHHccccccccccccccccccEEEEEEcHHHHHHccccHHHHHHHHHHHccEEEEcccccccc
Coil and Loop (DISEMBL)
mgyrsvgksslsiqfvdgqfvdsydptienTFVKttrmnnqdydlklvdtagqdeysifpaqysmdIHGYVLVYSITSHKSFEVVQILYDKLLDMTgkiqnssvksptscvssvpivlvgnkkdLHMERMISYDEGKRLAESWKAGFVEasakqddy
Flexible Loop (DISEMBL)
mgyrsvgksslsiqfvdgqfvdsydPTIENTfvkttrmnnqdYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIqnssvksptscvssvpivlvgnkkdlhMERMISYDEGKRLAESWKAGFveasakqddy
Low Complexity Region (SEG)
MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNssvksptscvssvPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY
Disordered region (IsUnstruct)
***********SIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQN******TSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA************
Disordered Region (DISOPRED)
*GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAK****
Disordered Region (DISEMBL)
*********SLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKI***********VSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVE********
Disordered Region (DISPRO)
MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	157	2.2.26 [Sep-21-2011]
Q9VND8	182	GTP-binding protein Rheb	yes	N/A	0.910	0.785	0.692	6e-58
Q921J2	184	GTP-binding protein Rheb	yes	N/A	0.904	0.771	0.670	8e-58
Q15382	184	GTP-binding protein Rheb	yes	N/A	0.904	0.771	0.670	8e-58
Q62639	184	GTP-binding protein Rheb	yes	N/A	0.904	0.771	0.670	9e-58
Q56JV3	184	GTP-binding protein Rheb	yes	N/A	0.904	0.771	0.664	3e-57
O94363	185	GTP-binding protein rhb1	yes	N/A	0.910	0.772	0.519	2e-42
Q8TAI7	183	GTPase RhebL1 OS=Homo sap	no	N/A	0.910	0.781	0.506	4e-40
Q7TNZ5	183	GTPase RhebL1 OS=Rattus n	no	N/A	0.904	0.775	0.490	6e-39
Q550Q4	185	GTP-binding protein Rheb	yes	N/A	0.910	0.772	0.493	2e-38
Q9D8T3	184	GTPase RhebL1 OS=Mus musc	no	N/A	0.904	0.771	0.496	4e-38

>sp|Q9VND8|RHEB_DROME GTP-binding protein Rheb homolog OS=Drosophila melanogaster GN=Rheb PE=2 SV=1

 Score =  222 bits (566), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 108/156 (69%), Positives = 125/156 (80%), Gaps = 13/156 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           MGYRSVGKSSL IQFV+GQFVDSYDPTIENTF K  R+ +QDY +KL+DTAGQDEYSIFP
Sbjct: 11  MGYRSVGKSSLCIQFVEGQFVDSYDPTIENTFTKIERVKSQDYIVKLIDTAGQDEYSIFP 70

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QYSMD HGYVLVYSITS KSFEVV+I+Y+KLLD+ GK               VP+VLVG
Sbjct: 71  VQYSMDYHGYVLVYSITSQKSFEVVKIIYEKLLDVMGK-------------KYVPVVLVG 117

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK DLH ER +S +EGK+LAESW+A F+E SAKQ++
Sbjct: 118 NKIDLHQERTVSTEEGKKLAESWRAAFLETSAKQNE 153

Not known; binds GTP and exhibits intrinsic GTPase activity.
Drosophila melanogaster (taxid: 7227)

>sp|Q921J2|RHEB_MOUSE GTP-binding protein Rheb OS=Mus musculus GN=Rheb PE=1 SV=1

 Score =  222 bits (565), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 104/155 (67%), Positives = 128/155 (82%), Gaps = 13/155 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +GYRSVGKSSL+IQFV+GQFVDSYDPTIENTF K   +N Q+Y L+LVDTAGQDEYSIFP
Sbjct: 12  LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 71

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             YS+DI+GY+LVYS+TS KSFEV+++++ KLLDM GK+Q             +PI+LVG
Sbjct: 72  QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-------------IPIMLVG 118

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           NKKDLHMER+ISY+EGK LAESW A F+E+SAK++
Sbjct: 119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 153

Stimulates the phosphorylation of S6K1 and EIF4EBP1 through activation of mTORC1 signaling. Activates the protein kinase activity of mTORC1. Has low intrinsic GTPase activity.

Mus musculus (taxid: 10090)

>sp|Q15382|RHEB_HUMAN GTP-binding protein Rheb OS=Homo sapiens GN=RHEB PE=1 SV=1

 Score =  222 bits (565), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 104/155 (67%), Positives = 128/155 (82%), Gaps = 13/155 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +GYRSVGKSSL+IQFV+GQFVDSYDPTIENTF K   +N Q+Y L+LVDTAGQDEYSIFP
Sbjct: 12  LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 71

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             YS+DI+GY+LVYS+TS KSFEV+++++ KLLDM GK+Q             +PI+LVG
Sbjct: 72  QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-------------IPIMLVG 118

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           NKKDLHMER+ISY+EGK LAESW A F+E+SAK++
Sbjct: 119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 153

Stimulates the phosphorylation of S6K1 and EIF4EBP1 through activation of mTORC1 signaling. Activates the protein kinase activity of mTORC1. Has low intrinsic GTPase activity.

Homo sapiens (taxid: 9606)

>sp|Q62639|RHEB_RAT GTP-binding protein Rheb OS=Rattus norvegicus GN=Rheb PE=1 SV=1

 Score =  222 bits (565), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 104/155 (67%), Positives = 128/155 (82%), Gaps = 13/155 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +GYRSVGKSSL+IQFV+GQFVDSYDPTIENTF K   +N Q+Y L+LVDTAGQDEYSIFP
Sbjct: 12  LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 71

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             YS+DI+GY+LVYS+TS KSFEV+++++ KLLDM GK+Q             +PI+LVG
Sbjct: 72  QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-------------IPIMLVG 118

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           NKKDLHMER+ISY+EGK LAESW A F+E+SAK++
Sbjct: 119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 153

Stimulates the phosphorylation of S6K1 and EIF4EBP1 through activation of mTORC1 signaling. Activates the protein kinase activity of mTORC1. Has low intrinsic GTPase activity.

Rattus norvegicus (taxid: 10116)

>sp|Q56JV3|RHEB_BOVIN GTP-binding protein Rheb OS=Bos taurus GN=RHEB PE=2 SV=1

 Score =  220 bits (560), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 103/155 (66%), Positives = 128/155 (82%), Gaps = 13/155 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +GYRSVGKSSL+IQFV+GQFVDSYDPTI+NTF K   +N Q+Y L+LVDTAGQDEYSIFP
Sbjct: 12  LGYRSVGKSSLTIQFVEGQFVDSYDPTIKNTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 71

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             YS+DI+GY+LVYS+TS KSFEV+++++ KLLDM GK+Q             +PI+LVG
Sbjct: 72  QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-------------IPIMLVG 118

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           NKKDLHMER+ISY+EGK LAESW A F+E+SAK++
Sbjct: 119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 153

Stimulates the phosphorylation of S6K1 and EIF4EBP1 through activation of mTORC1 signaling. Activates the protein kinase activity of mTORC1. Has low intrinsic GTPase activity.

Bos taurus (taxid: 9913)

>sp|O94363|RHB1_SCHPO GTP-binding protein rhb1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhb1 PE=3 SV=1

 Score =  171 bits (433), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/156 (51%), Positives = 111/156 (71%), Gaps = 13/156 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G RSVGKSSL++Q+V+  FV+SY PTIENTF K  +   Q++  +++DTAGQDEYSI  
Sbjct: 12  LGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDEYSILN 71

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
           +++S+ IHGYVLVYSITS  SFE+V+I+ DK+L+ TG                VPIV+VG
Sbjct: 72  SKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTG-------------TEWVPIVVVG 118

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK DLHM+R ++ +EGK LA  WK  + EASA+ ++
Sbjct: 119 NKSDLHMQRAVTAEEGKALANEWKCAWTEASARHNE 154

Regulates entry into stationary phase when extracellular nitrogen levels are adequate for growth.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8TAI7|REBL1_HUMAN GTPase RhebL1 OS=Homo sapiens GN=RHEBL1 PE=1 SV=1

 Score =  163 bits (413), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 79/156 (50%), Positives = 107/156 (68%), Gaps = 13/156 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +GYR VGK+SL+ QFV+G+F + YDPT+ENT+ K   +   ++ L LVDTAGQDEYSI P
Sbjct: 12  LGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILP 71

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             + + +HGYVLVYS+TS  SF+V++ LY KL +  GK             + VP+VLVG
Sbjct: 72  YSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGK-------------TRVPVVLVG 118

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK DL  ER +   EGK+LAESW A F+E+SA+++ 
Sbjct: 119 NKADLSPEREVQAVEGKKLAESWGATFMESSARENQ 154

Binds GTP and exhibits intrinsic GTPase activity. May activate NF-kappa-B-mediated gene transcription. Promotes signal transduction through MTOR, activates RPS6KB1, and is a downstream target of the small GTPase-activating proteins TSC1 and TSC2.

Homo sapiens (taxid: 9606)

>sp|Q7TNZ5|REBL1_RAT GTPase RhebL1 OS=Rattus norvegicus GN=Rhebl1 PE=2 SV=1

 Score =  159 bits (402), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 76/155 (49%), Positives = 109/155 (70%), Gaps = 13/155 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +GYRSVGK+SL+ QFV+G+F+  YDPT+ENT+ KT  +   ++ L LVDTAGQD+YSI P
Sbjct: 12  LGYRSVGKTSLAHQFVEGEFLKGYDPTVENTYSKTVTLGKDEFHLHLVDTAGQDKYSILP 71

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             + + +HGYVLVY++TS +SF++V+ LY KL +  GK             + +P++LVG
Sbjct: 72  YSFIIGVHGYVLVYNVTSLRSFQIVKNLYQKLQEGHGK-------------TRLPVLLVG 118

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           NK DL  +R +   EGK+LAESW A F+E+SA+ +
Sbjct: 119 NKADLSADREVQAVEGKKLAESWGATFMESSARDN 153

Binds GTP and exhibits intrinsic GTPase activity. May activate NF-kappa-B-mediated gene transcription. Promotes signal transduction through MTOR, activates RPS6KB1, and is a downstream target of the small GTPase-activating proteins TSC1 and TSC2.

Rattus norvegicus (taxid: 10116)

>sp|Q550Q4|RHEB_DICDI GTP-binding protein Rheb homolog OS=Dictyostelium discoideum GN=rheb PE=3 SV=1

 Score =  158 bits (399), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 102/156 (65%), Gaps = 13/156 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           MG R+VGKS++++QFV+    DSY PTIENT+ K  R   Q+Y ++++DTAGQDEYSI  
Sbjct: 12  MGSRAVGKSTITMQFVESHCPDSYHPTIENTYQKIIRHQGQEYSVEIIDTAGQDEYSILQ 71

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QYS+ IHGY+LVYS+TS  S EV+++L DK+L   G                +P VLVG
Sbjct: 72  KQYSIGIHGYILVYSVTSVSSLEVIKVLNDKILSSLG-------------AEKIPRVLVG 118

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK DL  ER IS D+G +LA  W+  FVE S K ++
Sbjct: 119 NKSDLDNERNISRDQGIQLANEWECAFVECSGKNNE 154

Not known; binds GTP and exhibits intrinsic GTPase activity.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9D8T3|REBL1_MOUSE GTPase RhebL1 OS=Mus musculus GN=Rhebl1 PE=2 SV=1

 Score =  157 bits (396), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 77/155 (49%), Positives = 107/155 (69%), Gaps = 13/155 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +GYRSVGK+SL+ QFV+G+F++ YDPT+ENT+ KT  +   ++ L LVDTAGQDEYSI P
Sbjct: 12  LGYRSVGKTSLAHQFVEGEFLEGYDPTVENTYSKTVTLGKDEFHLHLVDTAGQDEYSILP 71

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
               + +HGYVLVYS+ S +SF++V+ LY KL +  GK             + + ++LVG
Sbjct: 72  YSLIIGVHGYVLVYSVNSLRSFQIVKNLYQKLHEGHGK-------------TRLSVLLVG 118

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           NK DL  ER +   EGK+LAESW A F+E+SA+ +
Sbjct: 119 NKADLSPEREVQAVEGKKLAESWGAMFMESSARDN 153

Binds GTP and exhibits intrinsic GTPase activity. May activate NF-kappa-B-mediated gene transcription. Promotes signal transduction through MTOR, activates RPS6KB1, and is a downstream target of the small GTPase-activating proteins TSC1 and TSC2.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
401879814	182	GTP-binding protein Rheb [Nilaparvata lu	0.910	0.785	0.782	1e-64
242247613	188	GTP-binding protein Rheb-like [Acyrthosi	0.910	0.760	0.75	6e-64
307203979	182	GTP-binding protein Rheb-like protein [H	0.910	0.785	0.743	7e-62
307178169	182	GTP-binding protein Rheb-like protein [C	0.910	0.785	0.743	9e-62
383861807	182	PREDICTED: GTP-binding protein Rheb homo	0.910	0.785	0.743	1e-61
332021254	161	GTP-binding protein Rheb-like protein [A	0.910	0.888	0.743	1e-61
48098905	182	PREDICTED: GTP-binding protein Rheb homo	0.910	0.785	0.737	4e-61
242003062	182	GTP-binding protein rheb, putative [Pedi	0.910	0.785	0.730	4e-61
156552706	182	PREDICTED: GTP-binding protein Rheb homo	0.910	0.785	0.724	7e-61
322786290	203	hypothetical protein SINV_15441 [Solenop	0.910	0.704	0.724	2e-60

>gi|401879814|gb|AFQ30997.1| GTP-binding protein Rheb [Nilaparvata lugens]

 Score =  250 bits (638), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 122/156 (78%), Positives = 134/156 (85%), Gaps = 13/156 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF K+ R+ +QDYDLKLVDTAGQDEYSIFP
Sbjct: 11  MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFNKSMRLRSQDYDLKLVDTAGQDEYSIFP 70

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
           AQYSMDIHGYVLVYSITS KSFEVVQI+YDKLLDMTGKI              VPIVLVG
Sbjct: 71  AQYSMDIHGYVLVYSITSSKSFEVVQIIYDKLLDMTGKIH-------------VPIVLVG 117

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK DLH+ERMIS +EGK+LA++WKA F+E SAKQ++
Sbjct: 118 NKTDLHLERMISAEEGKKLADTWKAAFLETSAKQNE 153

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242247613|ref|NP_001156268.1| GTP-binding protein Rheb-like [Acyrthosiphon pisum] gi|239791527|dbj|BAH72216.1| ACYPI008618 [Acyrthosiphon pisum]

 Score =  248 bits (633), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 117/156 (75%), Positives = 137/156 (87%), Gaps = 13/156 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           MGYRSVGKSSLSIQFV+GQFVDSYDPTIENTFVKTT++NNQ+YDLKLVDTAGQDEYSI P
Sbjct: 11  MGYRSVGKSSLSIQFVEGQFVDSYDPTIENTFVKTTKVNNQEYDLKLVDTAGQDEYSILP 70

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QYSMDIHGYVLVYSITS KSFE++QI+YDKLLDMTGK+              VP+VLVG
Sbjct: 71  TQYSMDIHGYVLVYSITSPKSFEIIQIIYDKLLDMTGKVH-------------VPVVLVG 117

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NKKDLHM+R+++ +EG++LA+SWKA F+EASAKQ++
Sbjct: 118 NKKDLHMDRVVTQEEGRKLADSWKAVFLEASAKQNE 153

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203979|gb|EFN82883.1| GTP-binding protein Rheb-like protein [Harpegnathos saltator]

 Score =  241 bits (615), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 116/156 (74%), Positives = 133/156 (85%), Gaps = 13/156 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           MGYRSVGKSSLSIQFV+GQFVDSYDPTIENTF K+TR+N+QDY+LKLVDTAGQDEYSIFP
Sbjct: 11  MGYRSVGKSSLSIQFVEGQFVDSYDPTIENTFTKSTRVNSQDYELKLVDTAGQDEYSIFP 70

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QYSMDIHGYVLVYSITS KSFE+VQI+YDKLLD+TGK+              VPIVLVG
Sbjct: 71  TQYSMDIHGYVLVYSITSAKSFEIVQIIYDKLLDITGKLH-------------VPIVLVG 117

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK DL+++RMI+ D+GKRLA SW A F+E SAKQ++
Sbjct: 118 NKTDLYVDRMITTDQGKRLANSWNAAFLETSAKQNE 153

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178169|gb|EFN66977.1| GTP-binding protein Rheb-like protein [Camponotus floridanus]

 Score =  241 bits (614), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 116/156 (74%), Positives = 133/156 (85%), Gaps = 13/156 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           MGYRSVGKSSLSIQFV+GQFVDSYDPTIENTF K+TR+N+QDY+LKLVDTAGQDEYSIFP
Sbjct: 11  MGYRSVGKSSLSIQFVEGQFVDSYDPTIENTFTKSTRVNSQDYELKLVDTAGQDEYSIFP 70

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QYSMDIHGYVLVYSITS KSFE+VQI+YDKLLD+TGK+              VPIVLVG
Sbjct: 71  TQYSMDIHGYVLVYSITSAKSFEIVQIIYDKLLDITGKLH-------------VPIVLVG 117

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK DL+++RMI+ D+GKRLA SW A F+E SAKQ++
Sbjct: 118 NKTDLYVDRMITTDQGKRLANSWNAAFLETSAKQNE 153

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861807|ref|XP_003706376.1| PREDICTED: GTP-binding protein Rheb homolog [Megachile rotundata]

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 116/156 (74%), Positives = 135/156 (86%), Gaps = 13/156 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           MGYRSVGKSSLSIQFV+GQFVDSYDPTIENTF K+TR+N+QDY++KLVDTAGQDEYSIFP
Sbjct: 11  MGYRSVGKSSLSIQFVEGQFVDSYDPTIENTFTKSTRVNSQDYEVKLVDTAGQDEYSIFP 70

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
           AQYSMDIHGYVLVYSITS KSFEVVQI+YDKLLD+TGK+              VPIVLVG
Sbjct: 71  AQYSMDIHGYVLVYSITSAKSFEVVQIIYDKLLDITGKVH-------------VPIVLVG 117

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK DL+++RMI+ ++GKRLA+SW A F+E SAKQ++
Sbjct: 118 NKTDLYVDRMITTEQGKRLADSWHAAFLETSAKQNE 153

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021254|gb|EGI61639.1| GTP-binding protein Rheb-like protein [Acromyrmex echinatior]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 116/156 (74%), Positives = 133/156 (85%), Gaps = 13/156 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           MGYRSVGKSSLSIQFV+GQFVDSYDPTIENTF K+TR+N+QDY+LKLVDTAGQDEYSIFP
Sbjct: 11  MGYRSVGKSSLSIQFVEGQFVDSYDPTIENTFTKSTRVNSQDYELKLVDTAGQDEYSIFP 70

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QYSMDIHGYVLVYSITS KSFE+VQI+YDKLLD+TGK+              VPIVLVG
Sbjct: 71  TQYSMDIHGYVLVYSITSAKSFEIVQIIYDKLLDITGKLH-------------VPIVLVG 117

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK DL+++RMI+ D+GKRLA SW A F+E SAKQ++
Sbjct: 118 NKTDLYVDRMITTDQGKRLANSWNAAFLETSAKQNE 153

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48098905|ref|XP_392564.1| PREDICTED: GTP-binding protein Rheb homolog [Apis mellifera] gi|340708521|ref|XP_003392873.1| PREDICTED: GTP-binding protein Rheb homolog isoform 1 [Bombus terrestris] gi|340708523|ref|XP_003392874.1| PREDICTED: GTP-binding protein Rheb homolog isoform 2 [Bombus terrestris] gi|350413294|ref|XP_003489950.1| PREDICTED: GTP-binding protein Rheb homolog [Bombus impatiens]

 Score =  239 bits (609), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 115/156 (73%), Positives = 134/156 (85%), Gaps = 13/156 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           MGYRSVGKSSLSIQFV+GQFVDSYDPTIENTF K+TR+N+QDY++KLVDTAGQDEYSIFP
Sbjct: 11  MGYRSVGKSSLSIQFVEGQFVDSYDPTIENTFTKSTRVNSQDYEVKLVDTAGQDEYSIFP 70

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QYSMDIHGYVLVYSITS KSFEVVQI+YDKLLD+TGK+              VPIVLVG
Sbjct: 71  TQYSMDIHGYVLVYSITSAKSFEVVQIIYDKLLDITGKVH-------------VPIVLVG 117

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK DL+++RMI+ ++GKRLA+SW A F+E SAKQ++
Sbjct: 118 NKTDLYVDRMITTEQGKRLADSWHAAFLETSAKQNE 153

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242003062|ref|XP_002422596.1| GTP-binding protein rheb, putative [Pediculus humanus corporis] gi|212505397|gb|EEB09858.1| GTP-binding protein rheb, putative [Pediculus humanus corporis]

 Score =  239 bits (609), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 114/156 (73%), Positives = 133/156 (85%), Gaps = 13/156 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           MGYRSVGKSSL++QFV+GQFVDSYDPTIENTF K  R+++QDY++ LVDTAGQDEYSIFP
Sbjct: 11  MGYRSVGKSSLTLQFVEGQFVDSYDPTIENTFTKLFRVHSQDYEVNLVDTAGQDEYSIFP 70

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
           AQYSMDIHGYVLVYSITS KSFEV+Q++YDKLLDMTGK++             VPIVLVG
Sbjct: 71  AQYSMDIHGYVLVYSITSAKSFEVIQVIYDKLLDMTGKVK-------------VPIVLVG 117

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK DLHMERMIS + GKRLA+SWKA F+E SAK+++
Sbjct: 118 NKTDLHMERMISSEAGKRLADSWKASFLETSAKKNE 153

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156552706|ref|XP_001599091.1| PREDICTED: GTP-binding protein Rheb homolog [Nasonia vitripennis]

 Score =  238 bits (606), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 113/156 (72%), Positives = 134/156 (85%), Gaps = 13/156 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           MGYRSVGKSSLSIQFV+GQFVDSYDPTIENTF K+TR+N+QDY++KLVDTAGQDEYSIFP
Sbjct: 11  MGYRSVGKSSLSIQFVEGQFVDSYDPTIENTFTKSTRVNSQDYEVKLVDTAGQDEYSIFP 70

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QYSMDIHGYVLVYSITS KSFEVVQ++YDKLLD+TGK+              VP+VLVG
Sbjct: 71  TQYSMDIHGYVLVYSITSAKSFEVVQVIYDKLLDITGKVH-------------VPLVLVG 117

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK DL+++RMI+ ++GKRLA+SW A F+E SAKQ++
Sbjct: 118 NKTDLYVDRMITTEQGKRLADSWNAAFLETSAKQNE 153

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786290|gb|EFZ12860.1| hypothetical protein SINV_15441 [Solenopsis invicta]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 113/156 (72%), Positives = 132/156 (84%), Gaps = 13/156 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           MGYRSVGKSSLSIQFV+GQFVDSYDPTIENTF K TR+N+QDY++KLVDTAGQDEYSIFP
Sbjct: 32  MGYRSVGKSSLSIQFVEGQFVDSYDPTIENTFTKNTRVNSQDYEIKLVDTAGQDEYSIFP 91

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QYSMDIHGYVLVYSITS KSFE+VQI+Y+KLLD+TGK+              VPIVLVG
Sbjct: 92  TQYSMDIHGYVLVYSITSAKSFEIVQIIYEKLLDITGKLH-------------VPIVLVG 138

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK DL+++RMI+ ++GKRLA SW A F+E SAKQ++
Sbjct: 139 NKTDLYVDRMITTEQGKRLASSWNAAFLETSAKQNE 174

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
ZFIN|ZDB-GENE-000510-1	184	rhebl1 "Ras homolog enriched i	0.904	0.771	0.696	7.2e-52
FB|FBgn0041191	182	Rheb "Ras homolog enriched in	0.910	0.785	0.685	1.5e-51
UNIPROTKB|E1C909	184	RHEB "Uncharacterized protein"	0.904	0.771	0.670	3.1e-51
UNIPROTKB|F2Z4I1	184	RHEB "GTP-binding protein Rheb	0.904	0.771	0.670	3.1e-51
UNIPROTKB|E2RFF0	184	RHEB "Uncharacterized protein"	0.904	0.771	0.670	3.1e-51
UNIPROTKB|Q15382	184	RHEB "GTP-binding protein Rheb	0.904	0.771	0.670	3.1e-51
MGI|MGI:97912	184	Rheb "Ras homolog enriched in	0.904	0.771	0.670	3.1e-51
RGD|621840	184	Rheb "Ras homolog enriched in	0.904	0.771	0.670	3.1e-51
ZFIN|ZDB-GENE-040426-1690	184	rheb "Ras homolog enriched in	0.904	0.771	0.670	4e-51
UNIPROTKB|Q56JV3	184	RHEB "GTP-binding protein Rheb	0.904	0.771	0.664	8.3e-51

ZFIN|ZDB-GENE-000510-1 rhebl1 "Ras homolog enriched in brain like 1" [Danio rerio (taxid:7955)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 108/155 (69%), Positives = 127/155 (81%)

Query:     1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
             +GYRSVGKSSL+IQFV+GQFVDSYDPTIENTF K   +N QD++L+LVDTAGQDEYSIFP
Sbjct:    12 LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFNKMVSVNGQDFNLQLVDTAGQDEYSIFP 71

Query:    61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
               +SMDIHGYVLVYS+TS KSFEVVQ+L+DKLLDM GKIQ              P VLVG
Sbjct:    72 QSHSMDIHGYVLVYSVTSMKSFEVVQVLHDKLLDMVGKIQ-------------VPTVLVG 118

Query:   121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
             NKKDLHMER+I  +EGK+LA+SW A F+E+SAK++
Sbjct:   119 NKKDLHMERVIKPEEGKKLADSWGAAFMESSAKEN 153

GO:0005525 "GTP binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0041191 Rheb "Ras homolog enriched in brain ortholog (H. sapiens)" [Drosophila melanogaster (taxid:7227)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 107/156 (68%), Positives = 124/156 (79%)

Query:     1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
             MGYRSVGKSSL IQFV+GQFVDSYDPTIENTF K  R+ +QDY +KL+DTAGQDEYSIFP
Sbjct:    11 MGYRSVGKSSLCIQFVEGQFVDSYDPTIENTFTKIERVKSQDYIVKLIDTAGQDEYSIFP 70

Query:    61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
              QYSMD HGYVLVYSITS KSFEVV+I+Y+KLLD+ GK                P+VLVG
Sbjct:    71 VQYSMDYHGYVLVYSITSQKSFEVVKIIYEKLLDVMGK-------------KYVPVVLVG 117

Query:   121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
             NK DLH ER +S +EGK+LAESW+A F+E SAKQ++
Sbjct:   118 NKIDLHQERTVSTEEGKKLAESWRAAFLETSAKQNE 153

GO:0005525 "GTP binding" evidence=IEA;NAS

GO:0003924 "GTPase activity" evidence=ISS;IDA;NAS

GO:0007446 "imaginal disc growth" evidence=IMP

GO:0042594 "response to starvation" evidence=IEP

GO:0016049 "cell growth" evidence=IMP

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IMP

GO:0030307 "positive regulation of cell growth" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IDA

GO:0090070 "positive regulation of ribosome biogenesis" evidence=IMP

GO:0045727 "positive regulation of translation" evidence=IMP

GO:0045793 "positive regulation of cell size" evidence=IMP

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042331 "phototaxis" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0051124 "synaptic growth at neuromuscular junction" evidence=IMP

GO:0010506 "regulation of autophagy" evidence=IMP

UNIPROTKB|E1C909 RHEB "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 104/155 (67%), Positives = 127/155 (81%)

Query:     1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
             +GYRSVGKSSL+IQFV+GQFVDSYDPTIENTF K   +N Q+Y L+LVDTAGQDEYSIFP
Sbjct:    12 LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 71

Query:    61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
               YS+DI+GY+LVYS+TS KSFEV+++++ KLLDM GK+Q              PI+LVG
Sbjct:    72 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-------------IPIMLVG 118

Query:   121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
             NKKDLHMER+ISY+EGK LAESW A F+E+SAK++
Sbjct:   119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 153

GO:0003924 "GTPase activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0032008 "positive regulation of TOR signaling cascade" evidence=IEA

UNIPROTKB|F2Z4I1 RHEB "GTP-binding protein Rheb" [Bos taurus (taxid:9913)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 104/155 (67%), Positives = 127/155 (81%)

Query:     1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
             +GYRSVGKSSL+IQFV+GQFVDSYDPTIENTF K   +N Q+Y L+LVDTAGQDEYSIFP
Sbjct:    12 LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 71

Query:    61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
               YS+DI+GY+LVYS+TS KSFEV+++++ KLLDM GK+Q              PI+LVG
Sbjct:    72 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-------------IPIMLVG 118

Query:   121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
             NKKDLHMER+ISY+EGK LAESW A F+E+SAK++
Sbjct:   119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 153

GO:0032008 "positive regulation of TOR signaling cascade" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|E2RFF0 RHEB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 104/155 (67%), Positives = 127/155 (81%)

Query:     1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
             +GYRSVGKSSL+IQFV+GQFVDSYDPTIENTF K   +N Q+Y L+LVDTAGQDEYSIFP
Sbjct:    12 LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 71

Query:    61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
               YS+DI+GY+LVYS+TS KSFEV+++++ KLLDM GK+Q              PI+LVG
Sbjct:    72 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-------------IPIMLVG 118

Query:   121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
             NKKDLHMER+ISY+EGK LAESW A F+E+SAK++
Sbjct:   119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 153

GO:0032008 "positive regulation of TOR signaling cascade" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|Q15382 RHEB "GTP-binding protein Rheb" [Homo sapiens (taxid:9606)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 104/155 (67%), Positives = 127/155 (81%)

Query:     1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
             +GYRSVGKSSL+IQFV+GQFVDSYDPTIENTF K   +N Q+Y L+LVDTAGQDEYSIFP
Sbjct:    12 LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 71

Query:    61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
               YS+DI+GY+LVYS+TS KSFEV+++++ KLLDM GK+Q              PI+LVG
Sbjct:    72 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-------------IPIMLVG 118

Query:   121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
             NKKDLHMER+ISY+EGK LAESW A F+E+SAK++
Sbjct:   119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 153

GO:0046872 "metal ion binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0032008 "positive regulation of TOR signaling cascade" evidence=IMP

GO:0005525 "GTP binding" evidence=ISS

GO:0007165 "signal transduction" evidence=TAS

GO:0016020 "membrane" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007050 "cell cycle arrest" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

MGI|MGI:97912 Rheb "Ras homolog enriched in brain" [Mus musculus (taxid:10090)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 104/155 (67%), Positives = 127/155 (81%)

Query:     1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
             +GYRSVGKSSL+IQFV+GQFVDSYDPTIENTF K   +N Q+Y L+LVDTAGQDEYSIFP
Sbjct:    12 LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 71

Query:    61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
               YS+DI+GY+LVYS+TS KSFEV+++++ KLLDM GK+Q              PI+LVG
Sbjct:    72 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-------------IPIMLVG 118

Query:   121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
             NKKDLHMER+ISY+EGK LAESW A F+E+SAK++
Sbjct:   119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 153

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=ISO

GO:0005525 "GTP binding" evidence=ISO;IDA

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0019003 "GDP binding" evidence=ISO

GO:0019901 "protein kinase binding" evidence=IPI

GO:0030425 "dendrite" evidence=ISO

GO:0032008 "positive regulation of TOR signaling cascade" evidence=ISO;IDA

GO:0043025 "neuronal cell body" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

RGD|621840 Rheb "Ras homolog enriched in brain" [Rattus norvegicus (taxid:10116)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 104/155 (67%), Positives = 127/155 (81%)

Query:     1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
             +GYRSVGKSSL+IQFV+GQFVDSYDPTIENTF K   +N Q+Y L+LVDTAGQDEYSIFP
Sbjct:    12 LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 71

Query:    61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
               YS+DI+GY+LVYS+TS KSFEV+++++ KLLDM GK+Q              PI+LVG
Sbjct:    72 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-------------IPIMLVG 118

Query:   121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
             NKKDLHMER+ISY+EGK LAESW A F+E+SAK++
Sbjct:   119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 153

GO:0003924 "GTPase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=ISO;IDA

GO:0005681 "spliceosomal complex" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IDA

GO:0019003 "GDP binding" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0030425 "dendrite" evidence=IDA

GO:0032008 "positive regulation of TOR signaling cascade" evidence=ISO;ISS

GO:0043025 "neuronal cell body" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048168 "regulation of neuronal synaptic plasticity" evidence=NAS

ZFIN|ZDB-GENE-040426-1690 rheb "Ras homolog enriched in brain" [Danio rerio (taxid:7955)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 104/155 (67%), Positives = 128/155 (82%)

Query:     1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
             +GYRSVGKSSL+IQFV+GQFVDSYDPTIENTF K   +N Q+Y L+LVDTAGQDEYSIFP
Sbjct:    12 LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKMITVNGQEYHLQLVDTAGQDEYSIFP 71

Query:    61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
               YS+DI+GY+LVYS+TS+KSFEVV+++++KLLDM GK+Q              PI+LVG
Sbjct:    72 QTYSIDINGYILVYSVTSNKSFEVVKVIHEKLLDMVGKVQ-------------VPIMLVG 118

Query:   121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
             NKKDLHMER+IS +EGK LAESW A F+E+SAK++
Sbjct:   119 NKKDLHMERVISCEEGKALAESWNAAFMESSAKEN 153

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q56JV3 RHEB "GTP-binding protein Rheb" [Bos taurus (taxid:9913)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 103/155 (66%), Positives = 127/155 (81%)

Query:     1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
             +GYRSVGKSSL+IQFV+GQFVDSYDPTI+NTF K   +N Q+Y L+LVDTAGQDEYSIFP
Sbjct:    12 LGYRSVGKSSLTIQFVEGQFVDSYDPTIKNTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 71

Query:    61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
               YS+DI+GY+LVYS+TS KSFEV+++++ KLLDM GK+Q              PI+LVG
Sbjct:    72 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-------------IPIMLVG 118

Query:   121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
             NKKDLHMER+ISY+EGK LAESW A F+E+SAK++
Sbjct:   119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 153

GO:0005525 "GTP binding" evidence=ISS

GO:0032008 "positive regulation of TOR signaling cascade" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O94363	RHB1_SCHPO	No assigned EC number	0.5192	0.9108	0.7729	yes	N/A
P25378	RHEB_YEAST	No assigned EC number	0.3652	0.9044	0.6794	yes	N/A
Q15382	RHEB_HUMAN	No assigned EC number	0.6709	0.9044	0.7717	yes	N/A
Q9VND8	RHEB_DROME	No assigned EC number	0.6923	0.9108	0.7857	yes	N/A
P34443	RHEB1_CAEEL	No assigned EC number	0.4038	0.9108	0.6908	yes	N/A
Q921J2	RHEB_MOUSE	No assigned EC number	0.6709	0.9044	0.7717	yes	N/A
Q56JV3	RHEB_BOVIN	No assigned EC number	0.6645	0.9044	0.7717	yes	N/A
Q550Q4	RHEB_DICDI	No assigned EC number	0.4935	0.9108	0.7729	yes	N/A
Q62639	RHEB_RAT	No assigned EC number	0.6709	0.9044	0.7717	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	157
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	2e-90
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	8e-62
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-61
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	2e-58
pfam00071	162	pfam00071, Ras, Ras family	5e-48
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	8e-37
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-36
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-36
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	1e-35
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-35
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	2e-35
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	2e-34
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	1e-33
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	3e-32
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	7e-31
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	5e-29
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	7e-28
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	6e-27
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	2e-26
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-26
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	4e-25
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	8e-25
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	3e-24
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	4e-23
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-21
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	8e-21
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	8e-21
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	1e-20
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	3e-20
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	5e-20
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	1e-19
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-19
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-18
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-18
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	2e-18
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	2e-18
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	4e-18
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	7e-17
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	8e-17
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	1e-16
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	2e-16
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	6e-16
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	7e-16
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	1e-15
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	1e-15
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-15
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-15
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	4e-15
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	4e-15
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	1e-14
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-14
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	2e-14
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	5e-14
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	3e-13
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	5e-13
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	3e-12
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	3e-12
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	6e-12
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	1e-11
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-11
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	4e-11
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	7e-11
pfam08477	116	pfam08477, Miro, Miro-like protein	1e-10
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-10
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	1e-10
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	2e-10
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	4e-10
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	3e-09
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	2e-08
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	2e-07
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	2e-07
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	8e-07
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-06
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	4e-06
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	8e-06
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	8e-05
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	1e-04
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	1e-04

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  260 bits (667), Expect = 2e-90
 Identities = 97/155 (62%), Positives = 120/155 (77%), Gaps = 13/155 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G RSVGKSSL++QFV+G FV+SY PTIENTF K      Q+Y L++VDTAGQDEYSI P
Sbjct: 7   LGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHLEIVDTAGQDEYSILP 66

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            +YS+ IHGY+LVYS+TS KSFEVV+++YDK+LDM GK              SVPIVLVG
Sbjct: 67  QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-------------ESVPIVLVG 113

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           NK DLHMER +S +EGK+LAESW A F+E+SAK++
Sbjct: 114 NKSDLHMERQVSAEEGKKLAESWGAAFLESSAKEN 148

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  187 bits (477), Expect = 8e-62
 Identities = 67/154 (43%), Positives = 94/154 (61%), Gaps = 13/154 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L+IQFV G FVD YDPTIE+++ K   ++ +   L ++DTAGQ+E+S   
Sbjct: 8   LGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMR 67

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QY     G++LVYSIT  +SFE +    +++L +  +               VPIVLVG
Sbjct: 68  DQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDR-------------DDVPIVLVG 114

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           NK DL  ER++S +EGK LA  W   F+E SAK+
Sbjct: 115 NKCDLENERVVSTEEGKELARQWGCPFLETSAKE 148

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  186 bits (476), Expect = 1e-61
 Identities = 66/154 (42%), Positives = 95/154 (61%), Gaps = 13/154 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L+IQF+ G FVD YDPTIE+++ K   ++ +   L ++DTAGQ+E+S   
Sbjct: 6   LGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMR 65

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QY     G++LVYSIT  +SFE ++   +++L +  +               VPIVLVG
Sbjct: 66  DQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-------------DDVPIVLVG 112

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           NK DL  ER++S +EGK LA  W   F+E SAK+
Sbjct: 113 NKCDLESERVVSTEEGKELARQWGCPFLETSAKE 146

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  178 bits (455), Expect = 2e-58
 Identities = 68/155 (43%), Positives = 100/155 (64%), Gaps = 13/155 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L+I+FV G+FV+ YDPTIE+++ K   ++ + Y L ++DTAGQ+E+S   
Sbjct: 5   LGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEFSAMR 64

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QY  +  G++LVYSITS +SFE ++ + +++L +  K               VPIVLVG
Sbjct: 65  DQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDK-------------EDVPIVLVG 111

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           NK DL  ER +S +EG+ LAE W   F+E SAK +
Sbjct: 112 NKCDLENERQVSTEEGEALAEEWGCPFLETSAKTN 146

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  152 bits (386), Expect = 5e-48
 Identities = 57/157 (36%), Positives = 87/157 (55%), Gaps = 15/157 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTI-ENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKSSL I+F   +F + Y PTI  + + KT  ++ +   L++ DTAGQ+ +   
Sbjct: 5   VGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRAL 64

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              Y     G++LVY ITS  SFE V+   +++L    +              +VPIVLV
Sbjct: 65  RPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADE--------------NVPIVLV 110

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK DL  +R++S +EG+ LA+     F+E SAK ++
Sbjct: 111 GNKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNE 147

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  124 bits (313), Expect = 8e-37
 Identities = 60/148 (40%), Positives = 90/148 (60%), Gaps = 11/148 (7%)

Query: 6   VGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM 65
           VGK++L+IQ     FV++YDPTIE+++ K   ++ Q   L+++DTAGQ+EY+    Q+  
Sbjct: 10  VGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIR 69

Query: 66  DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDL 125
           +  G++LVYSITS  +FE V+   +         Q   VK  ++  + VPI++VGNK D 
Sbjct: 70  EGEGFILVYSITSRSTFERVERFRE---------QIQRVKDESA--ADVPIMIVGNKCDK 118

Query: 126 HMERMISYDEGKRLAESWKAGFVEASAK 153
             ER +S +EG  LA      F+EASAK
Sbjct: 119 VYEREVSTEEGAALARRLGCEFIEASAK 146

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  122 bits (310), Expect = 2e-36
 Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 17/154 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
            VGK+SL ++FVD +F ++Y  TI   F  KT  ++ +   L++ DTAGQ+ + SI  + 
Sbjct: 10  GVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQERFRSITSSY 69

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y    HG +LVY +T+ +SFE +    ++L +                  ++PI+LVGNK
Sbjct: 70  YR-GAHGAILVYDVTNRESFENLDKWLNELKEY--------------APPNIPIILVGNK 114

Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
            DL  ER +S +E ++ A+     F E SAK  +
Sbjct: 115 SDLEDERQVSTEEAQQFAKENGLLFFETSAKTGE 148

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  123 bits (309), Expect = 2e-36
 Identities = 60/153 (39%), Positives = 93/153 (60%), Gaps = 13/153 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QFV G FV+ YDPTIE+++ K   ++ Q   L+++DTAG ++++   
Sbjct: 7   LGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMR 66

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y  +  G+VLVYSIT+  +F  +Q L +++L          VK        VP++LVG
Sbjct: 67  DLYMKNGQGFVLVYSITAQSTFNDLQDLREQIL---------RVKD----TEDVPMILVG 113

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           NK DL  ER++  ++G+ LA  W   F+E SAK
Sbjct: 114 NKCDLEDERVVGKEQGQNLARQWGCAFLETSAK 146

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  120 bits (304), Expect = 1e-35
 Identities = 59/149 (39%), Positives = 86/149 (57%), Gaps = 13/149 (8%)

Query: 6   VGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM 65
           VGKS+L+IQF+   FV  YDPTIE+++ K   ++ Q   L ++DTAGQ+E+S    QY  
Sbjct: 13  VGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWARLDILDTAGQEEFSAMREQYMR 72

Query: 66  DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDL 125
              G++LV+S+T   SFE V   + ++L          VK         P++LVGNK DL
Sbjct: 73  TGEGFLLVFSVTDRGSFEEVDKFHTQIL---------RVKD----RDEFPMILVGNKADL 119

Query: 126 HMERMISYDEGKRLAESWKAGFVEASAKQ 154
             +R +S +EG+ LA   K  ++E SAK 
Sbjct: 120 EHQRQVSREEGQELARQLKIPYIETSAKD 148

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  120 bits (302), Expect = 2e-35
 Identities = 58/149 (38%), Positives = 86/149 (57%), Gaps = 14/149 (9%)

Query: 6   VGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM 65
           VGKS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS    QY  
Sbjct: 12  VGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 71

Query: 66  DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDL 125
              G++ V++I S KSFE +    +++           VK        VP+VLVGNK DL
Sbjct: 72  TGEGFLCVFAINSRKSFEDIHTYREQIK---------RVKD----SDDVPMVLVGNKCDL 118

Query: 126 HMERMISYDEGKRLAESWKAGFVEASAKQ 154
              R +S  +G+ LA+S+   ++E SAK 
Sbjct: 119 A-ARTVSTRQGQDLAKSYGIPYIETSAKT 146

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  121 bits (304), Expect = 2e-35
 Identities = 64/154 (41%), Positives = 92/154 (59%), Gaps = 13/154 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L+IQF+   F+D YDPTIE+++ K   ++ +   L ++DTAGQ+EYS   
Sbjct: 11  VGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMR 70

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QY     G++ VYSITS  SFE +    +++L +  K               VP++LVG
Sbjct: 71  DQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-------------DRVPMILVG 117

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           NK DL  ER +S  EG+ LA+S+   F+E SAKQ
Sbjct: 118 NKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQ 151

Length = 189

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  118 bits (296), Expect = 2e-34
 Identities = 55/155 (35%), Positives = 93/155 (60%), Gaps = 13/155 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QFV G F++ YDPTIE+ + K   +++    L+++DTAG ++++   
Sbjct: 7   LGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMR 66

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y  +  G+++VYS+ + ++F+ ++ + D+++ + G                VPI+LVG
Sbjct: 67  DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-------------YEKVPIILVG 113

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           NK DL  ER +S  EG+ LAE W   F+E SAK  
Sbjct: 114 NKVDLESEREVSSAEGRALAEEWGCPFMETSAKSK 148

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  115 bits (290), Expect = 1e-33
 Identities = 61/154 (39%), Positives = 97/154 (62%), Gaps = 14/154 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QFV G FVD YDPTIE+++ K   ++ Q   L+++DTAG ++++   
Sbjct: 7   LGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCMLEILDTAGTEQFTAMR 66

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y  +  G+ LVYSIT+ +SF  +Q L +++L    +++++           VP++LVG
Sbjct: 67  DLYIKNGQGFALVYSITAQQSFNDLQDLREQIL----RVKDT---------EDVPMILVG 113

Query: 121 NKKDLHMERMISYDEGKRLAESW-KAGFVEASAK 153
           NK DL  ER++S +EG+ LA  W    F+E SAK
Sbjct: 114 NKCDLEDERVVSKEEGQNLARQWGNCPFLETSAK 147

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  112 bits (282), Expect = 3e-32
 Identities = 56/154 (36%), Positives = 94/154 (61%), Gaps = 14/154 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QFV   F++SYDPTIE+++ K   ++ +  DL+++DTAG ++++   
Sbjct: 7   LGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMR 66

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y     G++LVYS+TS  S   +  L +++L    +I++S          +VP+VLVG
Sbjct: 67  ELYIKSGQGFLLVYSVTSEASLNELGELREQVL----RIKDS---------DNVPMVLVG 113

Query: 121 NKKDLHMERMISYDEGKRLAESW-KAGFVEASAK 153
           NK DL  +R +S ++G  L++ W    F E SA+
Sbjct: 114 NKADLEDDRQVSREDGVSLSQQWGNVPFYETSAR 147

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  108 bits (273), Expect = 7e-31
 Identities = 55/154 (35%), Positives = 79/154 (51%), Gaps = 17/154 (11%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           G   VGKSSL  +F DG+F + Y  TI   F  KT  ++ +   L++ DTAGQ+ + SI 
Sbjct: 7   GDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSIT 66

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
            + Y     G +LVY IT+ +SFE ++    +L +                  +V I+LV
Sbjct: 67  SS-YYRGAVGALLVYDITNRESFENLENWLKELREYAS--------------PNVVIMLV 111

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R +S +E +  AE     F E SAK
Sbjct: 112 GNKSDLEEQRQVSREEAEAFAEEHGLPFFETSAK 145

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  104 bits (260), Expect = 5e-29
 Identities = 51/148 (34%), Positives = 86/148 (58%), Gaps = 13/148 (8%)

Query: 6   VGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM 65
           VGKS+L++QF+  +FV+ Y+PT  +++ K   ++ ++  L ++DTAGQ++Y+     Y  
Sbjct: 11  VGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQEDYAAIRDNYFR 70

Query: 66  DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDL 125
              G++LV+SIT  +SF  +    +++L +                 +VP++LVGNK DL
Sbjct: 71  SGEGFLLVFSITDMESFTALAEFREQILRVKED-------------DNVPLLLVGNKCDL 117

Query: 126 HMERMISYDEGKRLAESWKAGFVEASAK 153
             +R +S +E   LAE W   +VE SAK
Sbjct: 118 EDKRQVSVEEAANLAEQWGVNYVETSAK 145

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score =  101 bits (252), Expect = 7e-28
 Identities = 58/158 (36%), Positives = 86/158 (54%), Gaps = 17/158 (10%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
            G   VGKSSL ++FV G F +SY PTIE+T+ +    +     L++ DT G  +   FP
Sbjct: 7   FGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQITDTTGSHQ---FP 63

Query: 61  AQYSMDI---HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIV 117
           A   + I   H ++LVYSITS +S E ++ +Y+ + ++ G             +  +PI+
Sbjct: 64  AMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNN-----------LEKIPIM 112

Query: 118 LVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           LVGNK D    R +S  EG  LA +W   F+E SAK +
Sbjct: 113 LVGNKCDESPSREVSSSEGAALARTWNCAFMETSAKTN 150

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 98.8 bits (246), Expect = 6e-27
 Identities = 50/152 (32%), Positives = 84/152 (55%), Gaps = 13/152 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS++++QF+   F D +DPTIE+ +    R++N+   L ++DTAGQ E++   
Sbjct: 8   LGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDILDTAGQAEFTAMR 67

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QY     G+++ YS+T   SF+     + +L+      ++            +P+VLVG
Sbjct: 68  DQYMRCGEGFIICYSVTDRHSFQEAS-EFKELITRVRLTED------------IPLVLVG 114

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           NK DL  +R ++ +EG+ LA  +   F E SA
Sbjct: 115 NKVDLEQQRQVTTEEGRNLAREFNCPFFETSA 146

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 97.3 bits (243), Expect = 2e-26
 Identities = 56/154 (36%), Positives = 85/154 (55%), Gaps = 17/154 (11%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           G +SVGK+S+  +F+   F + Y  TI   F+ KT  ++++   L+L DTAGQ+ + S+ 
Sbjct: 7   GDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQERFRSLI 66

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
           P+ Y  D    V+VY IT+ +SF+      D + D  G              + V IVLV
Sbjct: 67  PS-YIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG--------------NDVIIVLV 111

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R +S +EG++ A+   A F+E SAK
Sbjct: 112 GNKTDLSDKRQVSTEEGEKKAKENNAMFIETSAK 145

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 97.3 bits (243), Expect = 2e-26
 Identities = 50/152 (32%), Positives = 78/152 (51%), Gaps = 15/152 (9%)

Query: 6   VGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIFPAQYS 64
           VGK+SL +++V+ +F + ++ T + +F  KT  +  +  DL + DTAGQ+ Y      Y 
Sbjct: 11  VGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYY 70

Query: 65  MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD 124
            D  G +LVY IT   SF+ V+    +L  M G               ++ +V+VGNK D
Sbjct: 71  RDADGAILVYDITDADSFQKVKKWIKELKQMRGN--------------NISLVIVGNKID 116

Query: 125 LHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           L  +R++S  E +  A+S  A   E SAK   
Sbjct: 117 LERQRVVSKSEAEEYAKSVGAKHFETSAKTGK 148

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 93.9 bits (234), Expect = 4e-25
 Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 14/156 (8%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD-EYSIFP 60
           G   VGKS+L+++F+  +F+  Y+P +E+ + +   ++ +   L++ DT GQ        
Sbjct: 6   GASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPGQQQNEDPES 65

Query: 61  AQYSMD-IHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
            + S+    G+VLVYSIT   SF+VV  L               ++        +P++LV
Sbjct: 66  LERSLRWADGFVLVYSITDRSSFDVVSQLLQL------------IREIKKRDGEIPVILV 113

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           GNK DL   R +S +EG++LA      F E SA ++
Sbjct: 114 GNKADLLHSRQVSTEEGQKLALELGCLFFEVSAAEN 149

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 93.0 bits (232), Expect = 8e-25
 Identities = 53/155 (34%), Positives = 77/155 (49%), Gaps = 19/155 (12%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLV--DTAGQDEY-SI 58
           G  SVGKSS+ ++FV  +F ++ + TI   F+ T  +N  D  +K    DTAGQ+ Y S+
Sbjct: 8   GDSSVGKSSIVLRFVKNEFSENQESTIGAAFL-TQTVNLDDTTVKFEIWDTAGQERYRSL 66

Query: 59  FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
            P  Y       ++VY ITS +SFE  +    +L              P + V    I L
Sbjct: 67  APMYYR-GAAAAIVVYDITSEESFEKAKSWVKEL----------QEHGPPNIV----IAL 111

Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
            GNK DL  +R +S +E +  A+     F+E SAK
Sbjct: 112 AGNKADLESKRQVSTEEAQEYADENGLLFMETSAK 146

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 91.9 bits (229), Expect = 3e-24
 Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 15/151 (9%)

Query: 6   VGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYS 64
           VGKS L ++F +  F  S+  TI   F ++T  ++ +   L++ DTAGQ+ +      Y 
Sbjct: 14  VGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTSYY 73

Query: 65  MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD 124
               G +LVY IT  KSFE ++                ++    S    V  +LVGNK D
Sbjct: 74  RGAMGIILVYDITDEKSFENIKNWM------------RNIDEHAS--EDVERMLVGNKCD 119

Query: 125 LHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           +  +R++S +EG+ LA  +   F+E SAK +
Sbjct: 120 MEEKRVVSKEEGEALAREYGIKFLETSAKAN 150

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 88.8 bits (221), Expect = 4e-23
 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 34/168 (20%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFP 60
           G  +VGK+ L I +   +F   Y PT+ + +     ++ +  +L L DTAGQ+EY  + P
Sbjct: 7   GDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEEYDRLRP 66

Query: 61  AQYSM-DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVK--SPTSCVSSVPIV 117
             Y   D+  ++L +S+ S  SFE V+  +              +K   P      VPI+
Sbjct: 67  LSYPQTDV--FLLCFSVDSPSSFENVKTKW-----------YPEIKHYCPN-----VPII 108

Query: 118 LVGNKKDL-----------HMERMISYDEGKRLAESWKA-GFVEASAK 153
           LVG K DL             ++ I+ +EG++LA+   A  ++E SA 
Sbjct: 109 LVGTKIDLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSAL 156

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 84.7 bits (210), Expect = 2e-21
 Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 15/154 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L ++F D  + +SY  TI   F ++T  ++ +   L++ DTAGQ+ +   
Sbjct: 8   IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTI 67

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
            + Y    HG ++VY +T  +SF  V     + L    +  + +V            +LV
Sbjct: 68  TSSYYRGAHGIIIVYDVTDQESFNNV----KQWLQEIDRYASENVNK----------LLV 113

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  ++++ Y E K  A+     F+E SAK
Sbjct: 114 GNKCDLTDKKVVDYTEAKEFADELGIPFLETSAK 147

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 83.0 bits (205), Expect = 8e-21
 Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 15/156 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G  SVGK+S   ++ D  F  ++  T+   F VKT   N++   L++ DTAGQ+ Y   
Sbjct: 7   IGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQERYRTI 66

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              Y     G++L+Y IT+ +SF  VQ       D + +I+  S  +         ++LV
Sbjct: 67  TTAYYRGAMGFILMYDITNEESFNAVQ-------DWSTQIKTYSWDNAQ-------VILV 112

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           GNK D+  ER++S + G++LA+     F EASAK++
Sbjct: 113 GNKCDMEDERVVSAERGRQLADQLGFEFFEASAKEN 148

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 82.7 bits (205), Expect = 8e-21
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 15/157 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKSSL ++F D  F +    TI   F VKT  ++ +   L + DTAGQ+ +   
Sbjct: 6   IGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQERFRTL 65

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
            + Y     G +LVY +T   +F+ +    ++L                S       +LV
Sbjct: 66  TSSYYRGAQGVILVYDVTRRDTFDNLDTWLNEL-------------DTYSTNPDAVKMLV 112

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK D    R ++ +EG++ A      F+E SAK   
Sbjct: 113 GNKIDKE-NREVTREEGQKFARKHNMLFIETSAKTRI 148

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 84.4 bits (209), Expect = 1e-20
 Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 12/158 (7%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGK+++  +F+ G+F + Y PTIE+   K   +  + Y L ++DT+G      FP
Sbjct: 6   LGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSG---NHPFP 62

Query: 61  AQYSMDIHG---YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIV 117
           A   + I     ++LV+S+ + +SFE V  L +++L+    ++N + K        +P+V
Sbjct: 63  AMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKT-KEN----VKIPMV 117

Query: 118 LVGNKKDLHMERMISYDEGKRL-AESWKAGFVEASAKQ 154
           + GNK D    R +  DE ++L        + E SAK+
Sbjct: 118 ICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKK 155

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 82.2 bits (203), Expect = 3e-20
 Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 20/159 (12%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           MG   VGK++L  +F+   F   +  T+E    K   +      + ++DT+G   YS FP
Sbjct: 5   MGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGS--YS-FP 61

Query: 61  AQYSMDIH---GYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIV 117
           A   + I     + LVYS+   +SFE V+ L +++L+         VK        VPIV
Sbjct: 62  AMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILE---------VKEDKF----VPIV 108

Query: 118 LVGNKKDLHMERMISYDEGKRLAE-SWKAGFVEASAKQD 155
           +VGNK D   ER +   +     E  W  GFVEASAK +
Sbjct: 109 VVGNKIDSLAERQVEAADALSTVELDWNNGFVEASAKDN 147

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 82.1 bits (203), Expect = 5e-20
 Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 18/155 (11%)

Query: 1   MGYRSVGKSSLSIQFVDG-QFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKSSL+  F  G     +Y+ + ++T+ +T  ++ ++  L + D   Q++    
Sbjct: 6   LGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQEDGMWL 65

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQ--ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIV 117
                     YV+VYS+T   SFE      +  +                      +PI+
Sbjct: 66  EDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQA---------------EDIPII 110

Query: 118 LVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           LVGNK DL   R +S  EG+  A  +   F+E SA
Sbjct: 111 LVGNKSDLVRSREVSVQEGRACAVVFDCKFIETSA 145

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 80.7 bits (199), Expect = 1e-19
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 21/163 (12%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTI-ENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGK+++  QF+  +F + Y PT     +     ++ + YDL ++D      Y   
Sbjct: 6   LGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT 65

Query: 60  PAQYSMD--------IHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCV 111
             Q  MD           ++LVY I S  SF  V++L  ++L+              +  
Sbjct: 66  AGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETR-----------PAGN 114

Query: 112 SSVPIVLVGNKKDLHMERMISYDEGKRLA-ESWKAGFVEASAK 153
              PIV+VGNK+D    R         L  +SWK G++E SAK
Sbjct: 115 KEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAK 157

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 81.2 bits (200), Expect = 1e-19
 Identities = 49/170 (28%), Positives = 72/170 (42%), Gaps = 31/170 (18%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRM-NNQDYDLKLVDTAGQDEY-SIF 59
           G   VGK++L  + V  +F + Y PTI N     T     ++  L+L DTAGQ+EY S+ 
Sbjct: 12  GDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLR 71

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
           P  Y    +G ++VY  T  +S + +   + + L                    VPI+LV
Sbjct: 72  PEYYRGA-NGILIVYDSTLRESSDELTEEWLEELREL-------------APDDVPILLV 117

Query: 120 GNKKDLHMERMISYDEGKRLA---------------ESWKAGFVEASAKQ 154
           GNK DL  E+  S +   +L                E      +E SAK 
Sbjct: 118 GNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKS 167

Length = 219

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 77.2 bits (191), Expect = 1e-18
 Identities = 52/153 (33%), Positives = 68/153 (44%), Gaps = 25/153 (16%)

Query: 6   VGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLV-----DTAGQDEY-SIF 59
           VGKS+L  +F   +F      TI   F   TR      D K +     DTAGQ+ Y +I 
Sbjct: 14  VGKSNLLSRFTRNEFNLDSKSTIGVEF--ATR--TIQIDGKTIKAQIWDTAGQERYRAIT 69

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
            A Y     G +LVY IT   +FE V+    +L D                 S++ I+LV
Sbjct: 70  SAYYR-GAVGALLVYDITKKSTFENVERWLKELRDHAD--------------SNIVIMLV 114

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           GNK DL   R +  +E K  AE     F+E SA
Sbjct: 115 GNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSA 147

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 76.9 bits (190), Expect = 2e-18
 Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 29/164 (17%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQY 63
           +VGK+ L I +    F + Y PT+   +     ++ +  +L L DTAGQ++Y  + P  Y
Sbjct: 8   AVGKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSY 67

Query: 64  SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKK 123
             D   +++ +S+ S  SFE V+   +K      ++++           +VPI+LVG K 
Sbjct: 68  P-DTDVFLICFSVDSPASFENVK---EK---WYPEVKHFC--------PNVPIILVGTKL 112

Query: 124 DLH--------MERM----ISYDEGKRLAESWKA-GFVEASAKQ 154
           DL         + +     ++Y++G+ LA+   A  ++E SA  
Sbjct: 113 DLRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALT 156

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 76.7 bits (189), Expect = 2e-18
 Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 15/154 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L +QF D +F   +D TI   F  +   ++ +   L++ DTAGQ+ +   
Sbjct: 10  IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSI 69

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              Y     G +LVY IT  ++F  +    +         Q+S+        S++ I+L+
Sbjct: 70  TRSYYRGAAGALLVYDITRRETFNHLTSWLEDAR------QHSN--------SNMTIMLI 115

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL   R +SY+EG+  A      F+E SAK
Sbjct: 116 GNKCDLESRREVSYEEGEAFAREHGLIFMETSAK 149

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 76.7 bits (189), Expect = 2e-18
 Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 29/164 (17%)

Query: 7   GKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS-IFPAQYSM 65
           GK+ L I F   QF + Y PT+   +V    ++ +  +L L DTAGQ++Y  + P  Y  
Sbjct: 13  GKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYP- 71

Query: 66  DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDL 125
           D    ++ +SI S  S E +    +K    T ++++        C  +VPI+LVGNKKDL
Sbjct: 72  DTDVILMCFSIDSPDSLENIP---EK---WTPEVKH-------FC-PNVPIILVGNKKDL 117

Query: 126 H--------MERM----ISYDEGKRLAESWKA-GFVEASAKQDD 156
                    + +M    +  +EG+ +AE   A G++E SAK  +
Sbjct: 118 RNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKE 161

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 77.1 bits (190), Expect = 4e-18
 Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 15/158 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMN-NQDYDLKLVDTAGQDEYSI 58
           +G  +VGKSSL  +F +G+F +  DPT+  + F +   +       L+L DTAGQ+ +  
Sbjct: 8   IGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRS 67

Query: 59  FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
               Y  +  G +LV+ IT+ +SFE V    D L +    IQ      P   V     +L
Sbjct: 68  ITRSYYRNSVGVLLVFDITNRESFEHVH---DWLEEARSHIQ------PHRPV----FIL 114

Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           VG+K DL  +R ++ +E ++LA+     ++E SA+  D
Sbjct: 115 VGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGD 152

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 72.9 bits (179), Expect = 7e-17
 Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 17/155 (10%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G    GKS L  QF++ +F    + TI   F  +   +  +   L++ DTAGQ+ +   
Sbjct: 6   IGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQERFRSV 65

Query: 60  PAQYSMDIHGYVLVYSITSHKSFE-VVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
              Y     G +LVY ITS +SF  +   L D            ++ SP      + I+L
Sbjct: 66  TRSYYRGAAGALLVYDITSRESFNALTNWLTDA----------RTLASP-----DIVIIL 110

Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           VGNKKDL  +R +++ E  R A+     F+E SA 
Sbjct: 111 VGNKKDLEDDREVTFLEASRFAQENGLLFLETSAL 145

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 72.5 bits (178), Expect = 8e-17
 Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 18/158 (11%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTT---RMNNQDYDLKLVDTAGQDEYS 57
           +G  +VGKSS+  +FV G F   Y  TI   F++     R +++D  L L DTAGQ+E+ 
Sbjct: 6   VGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFD 65

Query: 58  IFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIV 117
                Y       +LV+S T  +SFE ++   +K+    G I               P+V
Sbjct: 66  AITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDI---------------PMV 110

Query: 118 LVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           LV  K DL  + +I+ +E + LA+  +      S K D
Sbjct: 111 LVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDD 148

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 72.8 bits (179), Expect = 1e-16
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 34/166 (20%)

Query: 6   VGKSSLSIQFVDGQFVDSYDPTI-ENTFVKTTRMNNQDYDLKLVDTAGQDEYS-IFPAQY 63
            GK+ L + +  G F + Y PT+ EN        N +  +L L DTAGQ++Y  + P  Y
Sbjct: 14  CGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAGQEDYDRLRPLSY 73

Query: 64  SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSP--TSCVSSVPIVLVGN 121
             D+   ++ YS+ +  S + V+  +                 P         PIVLVG 
Sbjct: 74  P-DVDVILICYSVDNPTSLDNVEDKW----------------YPEVNHFCPGTPIVLVGL 116

Query: 122 KKDL--HMERM----------ISYDEGKRLAESWKA-GFVEASAKQ 154
           K DL      +          ++ ++G+ +A+S  A  ++E SAK 
Sbjct: 117 KTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKL 162

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 72.2 bits (177), Expect = 2e-16
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 16/156 (10%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKSSL ++F D  F  SY  TI   F ++T  +N +   L++ DTAGQ+ +   
Sbjct: 12  IGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTI 71

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
            + Y    HG ++VY +T+ +SF  V+    + L    +I+ +           V  VLV
Sbjct: 72  TSTYYRGTHGVIVVYDVTNGESFVNVK----RWLQ---EIEQN--------CDDVCKVLV 116

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           GNK D    +++  ++  + A        E SAK++
Sbjct: 117 GNKNDDPERKVVETEDAYKFAGQMGISLFETSAKEN 152

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 70.2 bits (172), Expect = 6e-16
 Identities = 43/162 (26%), Positives = 59/162 (36%), Gaps = 26/162 (16%)

Query: 1   MGYRSVGKSSLSIQFVDGQFV---DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS 57
           +G   VGKSSL    + G+     D    T +        ++     L LVDT G DE+ 
Sbjct: 3   VGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDV-YVKELDKGKVKLVLVDTPGLDEFG 61

Query: 58  IFP-----AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVS 112
                             +LV   T  +S E  ++L  + L   G               
Sbjct: 62  GLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGI-------------- 107

Query: 113 SVPIVLVGNKKDLHMERMISYDE-GKRLAESWKAGFVEASAK 153
             PI+LVGNK DL  ER +      + LA+       E SAK
Sbjct: 108 --PIILVGNKIDLLEEREVEELLRLEELAKILGVPVFEVSAK 147

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 70.2 bits (172), Expect = 7e-16
 Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 16/156 (10%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G  +VGK+ +  +F  G F +    TI   F +KT  +  +   L++ DTAGQ+ +   
Sbjct: 9   IGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTI 68

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              Y    +G ++ Y IT   SFE V    +++                   S+V ++L+
Sbjct: 69  TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA--------------SNVVLLLI 114

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFV-EASAKQ 154
           GNK DL  +R + ++E   LAE +    V E SAK+
Sbjct: 115 GNKCDLEEQREVLFEEACTLAEHYGILAVLETSAKE 150

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 69.6 bits (171), Expect = 1e-15
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 22/163 (13%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEY-SI 58
           +G   VGK+SL  Q+V+ +F + Y  TI   F+ K   ++++   L++ DTAGQ+ + S+
Sbjct: 6   LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQERFQSL 65

Query: 59  FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
             A Y       VLVY +T+ KSFE +    D+ L        +S + P     + P V+
Sbjct: 66  GVAFYR-GADCCVLVYDVTNPKSFESLDSWRDEFL------IQASPRDP----ENFPFVV 114

Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAG-----FVEASAKQDD 156
           +GNK DL  +R +S     + A+ W        + E SAK+  
Sbjct: 115 LGNKIDLEEKRQVS----TKKAQQWCKSKGNIPYFETSAKEAI 153

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 69.9 bits (171), Expect = 1e-15
 Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 16/155 (10%)

Query: 1   MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSI 58
           +G   VGK+ L ++F DG F+  S+  T+   F  K   ++     L++ DTAGQ+ +  
Sbjct: 6   VGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQERFRS 65

Query: 59  FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
               Y  D H  +L+Y +T+  SF+ ++    ++L+                   V I+L
Sbjct: 66  VTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQS--------------DVVIML 111

Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           +GNK D+  ER++  ++G+RLA+ +   F+E SAK
Sbjct: 112 LGNKADMSGERVVKREDGERLAKEYGVPFMETSAK 146

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 69.1 bits (169), Expect = 2e-15
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 15/157 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L  QF + +F+     TI   F  +   +N Q   L++ DTAGQ+ +   
Sbjct: 8   IGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAV 67

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              Y     G ++VY IT   ++  +      L D       ++V           I L+
Sbjct: 68  TRSYYRGAAGALMVYDITRRSTYNHLSSW---LTDARNLTNPNTV-----------IFLI 113

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK DL  +R ++Y+E K+ A+     F+E SAK  +
Sbjct: 114 GNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGE 150

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 70.1 bits (171), Expect = 2e-15
 Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 14/154 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKSSL + F+    V+   PTI   F +K   +  +   L + DTAGQ+ +   
Sbjct: 20  IGDSGVGKSSLLVSFISSS-VEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTL 78

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
            + Y  +  G +LVY +T  ++F  +  ++ K +++    Q+        CV     +LV
Sbjct: 79  TSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQD--------CVK----MLV 126

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK D   ER +S +EG  LA+     F+E SAK
Sbjct: 127 GNKVDRESERDVSREEGMALAKEHGCLFLECSAK 160

Length = 211

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 69.2 bits (169), Expect = 4e-15
 Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 15/154 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L +QF D +F   +D TI   F  +   ++N+   L++ DTAGQ+ +   
Sbjct: 12  IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSI 71

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              Y     G +LVY IT  ++F     L   L D     Q+++        +++ I+L+
Sbjct: 72  TRSYYRGAAGALLVYDITRRETF---NHLASWLEDAR---QHAN--------ANMTIMLI 117

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL   R +S +EG++ A+     F+EASAK
Sbjct: 118 GNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK 151

Length = 210

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 67.8 bits (166), Expect = 4e-15
 Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 15/155 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQ-FVDSYDPTIENTFVKTT-RMNNQDYDLKLVDTAGQDEYSI 58
           +G  +VGKS+L  + +  +  +  Y P     +V T    + + Y   L+DTAGQ++Y  
Sbjct: 7   VGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYDA 66

Query: 59  FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
               Y   +   + V+ I        V  + + L   T +I +          S VPI+L
Sbjct: 67  IRRLYYRAVESSLRVFDIVIL-----VLDVEEILEKQTKEIIH-------HAESGVPIIL 114

Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           VGNK DL   ++         A+      +  SA+
Sbjct: 115 VGNKIDLRDAKL-KTHVAFLFAKLNGEPIIPLSAE 148

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 67.1 bits (164), Expect = 1e-14
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 17/158 (10%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY--S 57
           +G  +VGK+ L+ +F  G+F +  + TI   F  +T  ++ +   ++L DTAGQ+ +  S
Sbjct: 8   IGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKS 67

Query: 58  IFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIV 117
           +    Y  ++H  V VY +T+  SF            +   I+        S  + VP +
Sbjct: 68  MVQ-HYYRNVHAVVFVYDVTNMASFH----------SLPSWIEECE---QHSLPNEVPRI 113

Query: 118 LVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           LVGNK DL  +  +  D  +R A++      E SAK  
Sbjct: 114 LVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDP 151

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 66.8 bits (163), Expect = 2e-14
 Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 15/157 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGK+ L  +F  G F      TI   F +KT  +  +   L++ DTAGQ+ +   
Sbjct: 13  IGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSI 72

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              Y    +  +L Y IT  +SF         L +   +I+  +        + V  +LV
Sbjct: 73  TQSYYRSANALILTYDITCEESF-------RCLPEWLREIEQYA-------NNKVITILV 118

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK DL   R +S    +  +++    ++E SAK+ D
Sbjct: 119 GNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESD 155

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 66.2 bits (162), Expect = 2e-14
 Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 10/153 (6%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           MG   VGKS +  ++ +G+FV  Y PTI   + VK   + N++  +   D +G  EY   
Sbjct: 6   MGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEV 65

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
             ++  D  G +LVY +T  +SFE +     ++    G   N           ++ +V+ 
Sbjct: 66  RNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNME---------NIVVVVC 116

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
            NK DL   R +S DEG+  AES    + E SA
Sbjct: 117 ANKIDLTKHRAVSEDEGRLWAESKGFKYFETSA 149

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 65.8 bits (160), Expect = 5e-14
 Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 16/157 (10%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G R VGK+SL  +F D  F ++   T+   F +KT  +  +   L++ DTAGQ+ ++  
Sbjct: 6   IGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI 65

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
            + Y     G +LVY IT  ++F+ +     K + M  K  +   +          ++LV
Sbjct: 66  TSAYYRSAKGIILVYDITKKETFDDLP----KWMKMIDKYASEDAE----------LLLV 111

Query: 120 GNKKDLHMERMISYDEGKRLAESWKA-GFVEASAKQD 155
           GNK D   +R I+  +G++ A+      F EASAK +
Sbjct: 112 GNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDN 148

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 63.7 bits (155), Expect = 3e-13
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 27/162 (16%)

Query: 7   GKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS-IFPAQYSM 65
           GK+SL   F  G+F + Y PT+   +V   R++ +   L L DTAGQ+EY  + P  YS 
Sbjct: 13  GKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYS- 71

Query: 66  DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDL 125
             H  ++ ++I +  S E V+  +              ++       +VP++LVG KKDL
Sbjct: 72  KAHVILIGFAIDTPDSLENVRTKW--------------IEEVRRYCPNVPVILVGLKKDL 117

Query: 126 HME----------RMISYDEGKRLAESWKA-GFVEASAKQDD 156
             E            +   + K +A +  A  ++E SA   +
Sbjct: 118 RQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGE 159

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 63.8 bits (155), Expect = 5e-13
 Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 15/153 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS++  +F   +F      TI   F  +T ++  +    ++ DTAGQ+ Y   
Sbjct: 18  IGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI 77

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
            + Y     G +LVY IT  ++F+ VQ    +L D                 S++ I++ 
Sbjct: 78  TSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD--------------SNIVIMMA 123

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           GNK DL+  R ++ ++G+ LAE     F+E SA
Sbjct: 124 GNKSDLNHLRSVAEEDGQALAEKEGLSFLETSA 156

Length = 216

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 61.0 bits (148), Expect = 3e-12
 Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 24/163 (14%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTI-----------ENTFVKTTRMNNQDYDLKLVD 49
           +G   VGK++   ++ D +F   +  T+            +     T        L+L D
Sbjct: 10  LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHLQLWD 69

Query: 50  TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTS 109
           TAGQ+ +      +  D  G++L++ +TS +SF  V+    +L        ++  ++P  
Sbjct: 70  TAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQ------AHAYCENPD- 122

Query: 110 CVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
                 IVL+GNK DL  +R +S  + + LA+ +   + E SA
Sbjct: 123 ------IVLIGNKADLPDQREVSERQARELADKYGIPYFETSA 159

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 60.7 bits (147), Expect = 3e-12
 Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 31/167 (18%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS-IF 59
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAGQ++Y  + 
Sbjct: 7   VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 66

Query: 60  PAQY-SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
           P  Y   D+  +++ +S+ S  SFE               ++   V   T      P +L
Sbjct: 67  PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 110

Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ + G++LA   KA  +VE SA
Sbjct: 111 VGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSA 157

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 60.6 bits (147), Expect = 6e-12
 Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 13/158 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV--KTTRMNNQDYDLKLVDTAGQDEYSI 58
           +G  + GK+SL  +F    F  SY  TI   F   + T   + +  L++ D  GQ     
Sbjct: 6   LGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQQIGGK 65

Query: 59  FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
              +Y        LVY IT+ +SFE ++      L +  K+   S   P        +VL
Sbjct: 66  MLDKYIYGAQAVCLVYDITNSQSFENLE----DWLSVVKKVNEESETKPK-------MVL 114

Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           VGNK DL   R ++ ++  R A+      +  SAK  D
Sbjct: 115 VGNKTDLEHNRQVTAEKHARFAQENDMESIFVSAKTGD 152

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 58.8 bits (142), Expect = 1e-11
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 15/153 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGK+ L  +F D +F  S+  TI   F +KT  ++     +++ DTAGQ+ Y   
Sbjct: 6   IGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTI 65

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
             QY     G  LVY I+S +S++ +     K +    +     V+            L+
Sbjct: 66  TKQYYRRAQGIFLVYDISSERSYQHIM----KWVSDVDEYAPEGVQKI----------LI 111

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           GNK D   +R +  ++G +LA+ +   F E SA
Sbjct: 112 GNKADEEQKRQVGDEQGNKLAKEYGMDFFETSA 144

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 59.0 bits (142), Expect = 1e-11
 Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 15/135 (11%)

Query: 20  FVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS 78
           F ++Y  TI   F+ KT  ++     L+L DTAGQ+ +      Y  D    ++VY IT+
Sbjct: 5   FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN 64

Query: 79  HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKR 138
            +SFE        +L+  GK               V I LVGNK DL   R ++Y+EG +
Sbjct: 65  RQSFENTTKWIQDILNERGK--------------DVIIALVGNKTDLGDLRKVTYEEGMQ 110

Query: 139 LAESWKAGFVEASAK 153
            A+ +   F E SAK
Sbjct: 111 KAQEYNTMFHETSAK 125

Length = 176

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 57.4 bits (139), Expect = 4e-11
 Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 27/161 (16%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYS 64
           +VGK+SL + +    +   Y PT  + F     ++ +   L+L DTAGQDE+        
Sbjct: 10  AVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCY 69

Query: 65  MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD 124
            D   ++L +S+ +  SF+               I    +          PI+LVG + D
Sbjct: 70  PDTDVFLLCFSVVNPSSFQ--------------NISEKWIPEIRKHNPKAPIILVGTQAD 115

Query: 125 L------------HMERMISYDEGKRLAESWKAG-FVEASA 152
           L            + E+ +S    K LAE   A  ++E SA
Sbjct: 116 LRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSA 156

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 57.2 bits (138), Expect = 7e-11
 Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 23/156 (14%)

Query: 7   GKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMD 66
           GK+SL   F  G F   Y+PT+   ++    ++    +L L DTAGQ+E+    +    D
Sbjct: 12  GKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEFDRLRSLSYAD 71

Query: 67  IHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH 126
            H  +L +S+ +  S E V              ++  +         V +VLV  K DL 
Sbjct: 72  THVIMLCFSVDNPDSLENV--------------ESKWLAEIRHHCPGVKLVLVALKCDLR 117

Query: 127 MER--------MISYDEGKRLAESWKAG-FVEASAK 153
             R         ISY+EG  +A+   A  ++E SAK
Sbjct: 118 EPRNERDRGTHTISYEEGLAVAKRINACRYLECSAK 153

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 55.5 bits (134), Expect = 1e-10
 Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 13/118 (11%)

Query: 6   VGKSSLSIQFVDGQFVDSYDPTIENT-FVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYS 64
            GKSSL  Q V G+F         +T  V T  ++     L + D  G++E       + 
Sbjct: 10  SGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREELKFEHIIFM 69

Query: 65  MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
                 +LVY +T  +S   V  L   L ++                  +P++LVGNK
Sbjct: 70  KWADAILLVYDLTDRESLNEVSRLIAWLPNLRKL------------GGKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 14/153 (9%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRM-NNQDYDLKLVDTAGQDEYSIFPAQ 62
            VGK+S+  ++V G F   Y  TI   F +K      N    L+L D AGQ+ +      
Sbjct: 10  GVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRV 69

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y     G ++V+ +T   +FE V      L        +S V  P      +P +L+ NK
Sbjct: 70  YYKGAVGAIIVFDVTRPSTFEAVLKWKADL--------DSKVTLPNG--EPIPALLLANK 119

Query: 123 KDLHMERMI--SYDEGKRLAESWKAGFVEASAK 153
            DL  ER+        +   E+   G+ E SAK
Sbjct: 120 CDLKKERLAKDPEQMDQFCKENGFIGWFETSAK 152

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 56.6 bits (136), Expect = 1e-10
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 31/171 (18%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G  +VGK+ L I +    F   Y PT+ + +   T ++ +   L L DTAGQ+EY    
Sbjct: 9   VGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLR 68

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSC--VSSVPIVL 118
                  + +++ +SI S  S+E V+  +                 P  C    +VPI+L
Sbjct: 69  TLSYPQTNVFIICFSIASPSSYENVRHKW----------------HPEVCHHCPNVPILL 112

Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASAKQDD 156
           VG KKDL      ++++       I+  +G  LA+   A  ++E SA   D
Sbjct: 113 VGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQD 163

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 55.8 bits (134), Expect = 2e-10
 Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 31/167 (18%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS-IF 59
           +G  +VGK+ L + + +  F + Y PT+ + +  +  +  + Y L L DTAGQ++Y  + 
Sbjct: 6   VGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLR 65

Query: 60  PAQYSM-DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
           P  Y M D+  +++ +S+ +  SF+               ++   V        +VP +L
Sbjct: 66  PLSYPMTDV--FLICFSVVNPASFQ--------------NVKEEWVPELKEYAPNVPYLL 109

Query: 119 VGNKKDL-----------HM-ERMISYDEGKRLAESWKAG-FVEASA 152
           +G + DL            M E+ I+ ++G++LA+   A  +VE SA
Sbjct: 110 IGTQIDLRDDPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSA 156

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 55.3 bits (133), Expect = 4e-10
 Identities = 42/159 (26%), Positives = 64/159 (40%), Gaps = 21/159 (13%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDS-YDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSI 58
           +G  SVGK+SL  ++V  +F+   Y  TI   FV K   +  +   L + DTAG + Y  
Sbjct: 6   LGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEA 65

Query: 59  FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
               Y       ++ Y +T   SFE  +                 VK   +      I L
Sbjct: 66  MSRIYYRGAKAAIVCYDLTDSSSFERAKFW---------------VKELQNLEEHCKIYL 110

Query: 119 VGNKKDLHME----RMISYDEGKRLAESWKAGFVEASAK 153
            G K DL  +    R + + + +  A+  KA   E S+K
Sbjct: 111 CGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSK 149

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 52.8 bits (127), Expect = 3e-09
 Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 29/164 (17%)

Query: 7   GKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQYSM 65
           GK++L   F    F ++Y PT+   +  +  ++ Q  +L L DT+G   Y ++ P  Y  
Sbjct: 13  GKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSGSPYYDNVRPLSYP- 71

Query: 66  DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDL 125
           D    ++ + I+  ++ + V      L    G+++            + P++LVG K DL
Sbjct: 72  DSDAVLICFDISRPETLDSV------LKKWKGEVRE--------FCPNTPVLLVGCKSDL 117

Query: 126 ------------HMERMISYDEGKRLAESWKA-GFVEASAKQDD 156
                         +  +S+++G+ LA+   A  +VE SAK  +
Sbjct: 118 RTDLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSE 161

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 33/164 (20%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF-PAQY 63
           +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAGQ++Y    P  Y
Sbjct: 11  AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 70

Query: 64  -SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQ-NSSVKSPTSCVSSVPIVLVGN 121
              D+  +++ +S+ S  SFE V+           K         P     + PI+LVG 
Sbjct: 71  PQTDV--FLICFSLVSPASFENVR----------AKWYPEVRHHCP-----NTPIILVGT 113

Query: 122 KKDLHMERM------------ISYDEGKRLAESWKA-GFVEASA 152
           K DL  ++             I+Y +G  +A+   A  ++E SA
Sbjct: 114 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 157

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 48.0 bits (114), Expect = 2e-07
 Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 16/152 (10%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTT-RMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGK  +     DG     Y   +   +  TT  ++ +   L+L DT+GQ  +   
Sbjct: 12  VGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTI 71

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              YS    G +LVY IT+  SF+ +               +  +K        VP +LV
Sbjct: 72  FRSYSRGAQGIILVYDITNRWSFDGI---------------DRWIKEIDEHAPGVPKILV 116

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEAS 151
           GN+  L  +R ++ ++ +  AE     F E S
Sbjct: 117 GNRLHLAFKRQVATEQAQAYAERNGMTFFEVS 148

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 18/123 (14%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS-IFPAQY 63
           +VGK+ + I +    F   Y PT+ + F     ++    +L L DTAGQ++Y+ + P  Y
Sbjct: 11  AVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSY 70

Query: 64  -SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
              D+  ++L +S+ S  S+E               +    +         VPIVLVG K
Sbjct: 71  RGADV--FLLAFSLISKASYE--------------NVLKKWIPELRHYAPGVPIVLVGTK 114

Query: 123 KDL 125
            DL
Sbjct: 115 LDL 117

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 46.0 bits (109), Expect = 8e-07
 Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 18/158 (11%)

Query: 2   GYRSVGKSSLSIQF-VDG-QFVDSYDPTIENTF-VKTTRMNNQDYDLKLV--DTAGQDEY 56
           G  +VGKS+L   F  DG  F  +Y  T      VKT  + +    ++L   D+AGQ+ +
Sbjct: 7   GDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSAGQELF 66

Query: 57  SIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPI 116
           S              +VY +T+  SF       +++                S     P 
Sbjct: 67  SDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRV-------------RTHSHGLHTPG 113

Query: 117 VLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           VLVGNK DL   R +   + + LA++    F E SAK+
Sbjct: 114 VLVGNKCDLTDRREVDAAQAQALAQANTLKFYETSAKE 151

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 18/156 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQY 63
           SVGK+ L  +F    F  +Y  TI   F ++   +    + L+L DTAGQ+ +    + Y
Sbjct: 10  SVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTY 69

Query: 64  SMDIHGYVLVYSITSHKSFE-VVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
                  ++V+ +T   S E   Q L D L +            P+S +    + LVG K
Sbjct: 70  YRGAQAIIIVFDLTDVASLEHTRQWLEDALKE----------NDPSSVL----LFLVGTK 115

Query: 123 KDLHMERMISYDEGK--RLAESWKAGFVEASAKQDD 156
           KDL      +  E    +LA   KA +   SA   +
Sbjct: 116 KDLSSPAQYALMEQDAIKLAREMKAEYWAVSALTGE 151

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 44.1 bits (104), Expect = 4e-06
 Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 13/157 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKSSL  ++V  +F      TI   F+ K   ++     L++ DTAGQ+ +   
Sbjct: 11  LGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSL 70

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              +       +L +S+   +SF+ +     + +        + VK P     S P V++
Sbjct: 71  RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYY------ADVKEP----ESFPFVIL 120

Query: 120 GNKKDLHMERMISYDEGKR-LAESWKAGFVEASAKQD 155
           GNK D+  ER +S +E +    ++    + E SAK  
Sbjct: 121 GNKIDIP-ERQVSTEEAQAWCRDNGDYPYFETSAKDA 156

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 43.5 bits (102), Expect = 8e-06
 Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 29/170 (17%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G    GK++L   F    F ++Y PT+   +  +  ++ Q  +L L DT+G   Y ++ 
Sbjct: 11  VGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVR 70

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
           P  Y  D    ++ + I+  ++ + V      L    G+IQ            +  ++LV
Sbjct: 71  PLSYP-DSDAVLICFDISRPETLDSV------LKKWKGEIQ--------EFCPNTKMLLV 115

Query: 120 GNKKDL------------HMERMISYDEGKRLAESWKAG-FVEASAKQDD 156
           G K DL            H +  +SYD+G  +A+   A  ++E SA Q +
Sbjct: 116 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSE 165

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 40.2 bits (94), Expect = 8e-05
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 24/130 (18%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKT-----TRMNNQDYDLKLVDTAGQDE 55
           +G  +VGKS L  +F+    +D Y+P   +T+  T      +   +   +   DTAGQ+ 
Sbjct: 6   LGDSAVGKSKLVERFL----MDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 56  YSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP 115
           +    A Y    H  +LV+ +T   +++ +   Y++L +   +I               P
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEI---------------P 106

Query: 116 IVLVGNKKDL 125
            ++V NK DL
Sbjct: 107 CIVVANKIDL 116

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 21/146 (14%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G    GKS+L  +++ G +V    P     F K   ++ Q + L + D  G  +     
Sbjct: 6   VGNLRSGKSALVHRYLTGSYVQLESPEGGR-FKKEVLVDGQSHLLLIRDEGGAPD----- 59

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
           AQ++  +   + V+S+    SF+ V  LY +L         SS ++    +S +P++LVG
Sbjct: 60  AQFAGWVDAVIFVFSLEDEASFQTVYRLYHQL---------SSYRN----ISEIPLILVG 106

Query: 121 NKKDLHME--RMISYDEGKRLAESWK 144
            +  +     R+I     ++L    K
Sbjct: 107 TQDAISASNPRVIDDARARQLCADMK 132

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 41/159 (25%), Positives = 62/159 (38%), Gaps = 33/159 (20%)

Query: 6   VGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAG---QDEYSIFPAQ 62
           VGKSSL +  V  +F ++    +    +    +  +     +VDT+             +
Sbjct: 13  VGKSSLIMSLVSEEFPENVPRVLPEITIPAD-VTPERVPTTIVDTSSRPQDRANLAAEIR 71

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
            +  I    LVYS+    + E ++    K L +   I+   VK        VPI+LVGNK
Sbjct: 72  KANVI---CLVYSVDRPSTLERIRT---KWLPL---IRRLGVK--------VPIILVGNK 114

Query: 123 KDL--------HMERMISYDEGKRLAESWKAGFVEASAK 153
            DL          E M+      R  E+     VE SAK
Sbjct: 115 SDLRDGSSQAGLEEEMLPIMNEFREIETC----VECSAK 149

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
KOG0084|consensus	205		100.0
KOG0092|consensus	200		100.0
KOG0078|consensus	207		100.0
KOG0094|consensus	221		100.0
KOG0098|consensus	216		100.0
KOG0394|consensus	210		100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0079|consensus	198		100.0
KOG0080|consensus	209		100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
KOG0093|consensus	193		100.0
KOG0081|consensus	219		100.0
KOG0087|consensus	222		100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
KOG0086|consensus	214		100.0
KOG0083|consensus	192		100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
KOG0088|consensus	218		100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
KOG0091|consensus	213		100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
KOG0097|consensus	215		100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
KOG0395|consensus	196		100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
KOG0095|consensus	213		100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
KOG0393|consensus	198		100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.98
PLN03118	211	Rab family protein; Provisional	99.98
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.98
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.98
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
PLN00023	334	GTP-binding protein; Provisional	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
PTZ00099	176	rab6; Provisional	99.96
PTZ00133	182	ADP-ribosylation factor; Provisional	99.96
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
KOG4252|consensus	246		99.94
KOG0073|consensus	185		99.94
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.94
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.93
KOG0070|consensus	181		99.93
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.92
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.91
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.91
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.91
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.91
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.91
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.9
KOG0075|consensus	186		99.9
PRK12299	335	obgE GTPase CgtA; Reviewed	99.9
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.9
KOG1673|consensus	205		99.89
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.88
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.88
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.88
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.88
KOG3883|consensus	198		99.88
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.87
PRK04213	201	GTP-binding protein; Provisional	99.87
PRK03003	472	GTP-binding protein Der; Reviewed	99.86
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.86
PRK15494	339	era GTPase Era; Provisional	99.86
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.86
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.86
KOG0071|consensus	180		99.86
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.86
PRK12297	424	obgE GTPase CgtA; Reviewed	99.85
KOG4423|consensus	229		99.85
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.85
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.84
KOG0096|consensus	216		99.84
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.84
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.84
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.84
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.84
PRK03003	472	GTP-binding protein Der; Reviewed	99.83
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.83
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.82
PRK11058	426	GTPase HflX; Provisional	99.82
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.82
PRK12296	500	obgE GTPase CgtA; Reviewed	99.82
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.82
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.82
KOG0076|consensus	197		99.82
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.82
cd00881	189	GTP_translation_factor GTP translation factor fami	99.81
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.81
PRK00089	292	era GTPase Era; Reviewed	99.81
KOG0074|consensus	185		99.81
PRK00093	435	GTP-binding protein Der; Reviewed	99.81
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.8
PRK12298	390	obgE GTPase CgtA; Reviewed	99.8
CHL00189	742	infB translation initiation factor 2; Provisional	99.8
PRK05306	787	infB translation initiation factor IF-2; Validated	99.79
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.79
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.78
KOG0072|consensus	182		99.78
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.78
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.77
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.76
PRK00093	435	GTP-binding protein Der; Reviewed	99.76
COG2229	187	Predicted GTPase [General function prediction only	99.76
COG1159	298	Era GTPase [General function prediction only]	99.75
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.75
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.75
PRK05433	600	GTP-binding protein LepA; Provisional	99.75
PRK12317	425	elongation factor 1-alpha; Reviewed	99.75
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.74
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.74
KOG1707|consensus	625		99.73
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.71
PRK10218	607	GTP-binding protein; Provisional	99.7
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.7
COG0486	454	ThdF Predicted GTPase [General function prediction	99.7
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.7
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.7
PRK04004	586	translation initiation factor IF-2; Validated	99.69
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.67
COG1160	444	Predicted GTPases [General function prediction onl	99.67
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.67
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.66
KOG1489|consensus	366		99.66
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.66
COG1160	444	Predicted GTPases [General function prediction onl	99.65
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.65
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.65
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.64
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.63
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.6
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.6
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.6
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.6
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.59
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.59
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.59
COG0536	369	Obg Predicted GTPase [General function prediction	99.58
COG1084	346	Predicted GTPase [General function prediction only	99.58
PRK12735	396	elongation factor Tu; Reviewed	99.57
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.57
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.57
KOG0077|consensus	193		99.55
PRK12736	394	elongation factor Tu; Reviewed	99.55
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.53
PLN00043	447	elongation factor 1-alpha; Provisional	99.52
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.52
CHL00071	409	tufA elongation factor Tu	99.51
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.51
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.51
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.51
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.49
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.49
PLN03126	478	Elongation factor Tu; Provisional	99.49
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.47
KOG1707|consensus	625		99.47
COG0218	200	Predicted GTPase [General function prediction only	99.47
COG2262	411	HflX GTPases [General function prediction only]	99.47
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.46
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.46
KOG3905|consensus	473		99.44
COG1163	365	DRG Predicted GTPase [General function prediction	99.44
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.44
PRK13351	687	elongation factor G; Reviewed	99.44
KOG1191|consensus	531		99.44
KOG1423|consensus	379		99.43
KOG0090|consensus	238		99.43
PRK00049	396	elongation factor Tu; Reviewed	99.41
PRK09602	396	translation-associated GTPase; Reviewed	99.41
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.39
PRK14845	1049	translation initiation factor IF-2; Provisional	99.39
PTZ00141	446	elongation factor 1- alpha; Provisional	99.34
KOG0462|consensus	650		99.32
PLN03127	447	Elongation factor Tu; Provisional	99.32
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.32
PRK12740	668	elongation factor G; Reviewed	99.3
KOG1145|consensus	683		99.3
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.29
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.25
PTZ00258	390	GTP-binding protein; Provisional	99.24
KOG1490|consensus	620		99.24
KOG0705|consensus	749		99.23
PRK12739	691	elongation factor G; Reviewed	99.22
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.19
PRK00007	693	elongation factor G; Reviewed	99.19
PRK09601	364	GTP-binding protein YchF; Reviewed	99.19
PRK09866	741	hypothetical protein; Provisional	99.17
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.17
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.17
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.15
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.13
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.12
PRK13768	253	GTPase; Provisional	99.12
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.09
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.07
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.07
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.07
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.04
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.04
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.03
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.01
COG3596	296	Predicted GTPase [General function prediction only	99.01
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.97
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.95
PTZ00416	836	elongation factor 2; Provisional	98.93
KOG3886|consensus	295		98.93
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.92
PRK12289	352	GTPase RsgA; Reviewed	98.92
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.9
PRK00098	298	GTPase RsgA; Reviewed	98.88
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.87
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.85
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.83
PRK07560	731	elongation factor EF-2; Reviewed	98.8
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.8
PRK12288	347	GTPase RsgA; Reviewed	98.78
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.77
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.77
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.71
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.71
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.71
KOG0458|consensus	603		98.69
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.69
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.68
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.66
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.66
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.61
KOG0468|consensus	971		98.59
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.58
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	98.57
KOG1486|consensus	364		98.57
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.56
KOG1532|consensus	366		98.52
KOG4273|consensus	418		98.51
KOG1144|consensus	1064		98.47
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.36
KOG0461|consensus	522		98.32
KOG1954|consensus	532		98.3
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.29
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.26
KOG0082|consensus	354		98.23
KOG2486|consensus	320		98.23
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.22
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.21
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.18
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.18
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.11
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.1
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.1
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.09
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.09
PRK12288	347	GTPase RsgA; Reviewed	98.09
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.08
PRK01889	356	GTPase RsgA; Reviewed	98.07
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.07
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.03
COG1161	322	Predicted GTPases [General function prediction onl	98.01
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.01
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.01
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.0
KOG2655|consensus	366		98.0
KOG0410|consensus	410		97.96
KOG3887|consensus	347		97.94
PRK10416	318	signal recognition particle-docking protein FtsY;	97.93
PRK13796	365	GTPase YqeH; Provisional	97.92
KOG1143|consensus	591		97.89
KOG1424|consensus	562		97.88
COG0050	394	TufB GTPases - translation elongation factors [Tra	97.86
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	97.84
PRK12289	352	GTPase RsgA; Reviewed	97.84
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.83
COG1162	301	Predicted GTPases [General function prediction onl	97.82
KOG1547|consensus	336		97.82
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.81
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.8
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	97.77
COG3523	1188	IcmF Type VI protein secretion system component Va	97.73
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.72
COG1162	301	Predicted GTPases [General function prediction onl	97.72
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.68
KOG1491|consensus	391		97.68
cd03112	158	CobW_like The function of this protein family is u	97.67
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.65
PRK00098	298	GTPase RsgA; Reviewed	97.63
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	97.62
PRK14974	336	cell division protein FtsY; Provisional	97.55
PRK13796	365	GTPase YqeH; Provisional	97.55
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.53
KOG0467|consensus	887		97.46
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.44
KOG0448|consensus	749		97.44
cd03110	179	Fer4_NifH_child This protein family's function is	97.33
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.32
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.32
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.31
KOG0447|consensus	980		97.26
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.24
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.23
COG0523	323	Putative GTPases (G3E family) [General function pr	97.21
cd03114	148	ArgK-like The function of this protein family is u	97.21
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.19
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.18
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.18
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.15
KOG0460|consensus	449		97.15
KOG1487|consensus	358		97.09
KOG0099|consensus	379		97.02
cd02036	179	MinD Bacterial cell division requires the formatio	96.94
TIGR00959	428	ffh signal recognition particle protein. This mode	96.93
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	96.87
KOG3929|consensus	363		96.84
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.83
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.82
KOG1534|consensus	273		96.8
KOG0465|consensus	721		96.8
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.78
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.78
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.76
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.76
KOG0463|consensus	641		96.76
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.68
cd03111	106	CpaE_like This protein family consists of proteins	96.67
KOG0464|consensus	753		96.64
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.63
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	96.6
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.6
PF13555	62	AAA_29: P-loop containing region of AAA domain	96.59
KOG3859|consensus	406		96.58
PRK10867	433	signal recognition particle protein; Provisional	96.56
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.51
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.49
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	96.44
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	96.41
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	96.4
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.37
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.37
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.36
KOG2484|consensus	435		96.33
PRK08118	167	topology modulation protein; Reviewed	96.32
smart00382	148	AAA ATPases associated with a variety of cellular	96.32
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.32
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	96.3
KOG0780|consensus	483		96.3
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.3
PF00004	132	AAA: ATPase family associated with various cellula	96.29
PRK07261	171	topology modulation protein; Provisional	96.25
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.24
PRK11545	163	gntK gluconate kinase 1; Provisional	96.24
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.24
PRK14738	206	gmk guanylate kinase; Provisional	96.24
KOG0066|consensus	807		96.22
COG3845	501	ABC-type uncharacterized transport systems, ATPase	96.19
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.16
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.14
PRK14737	186	gmk guanylate kinase; Provisional	96.14
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.11
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.07
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.03
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.03
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.01
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	95.99
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	95.99
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	95.97
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	95.97
COG4525	259	TauB ABC-type taurine transport system, ATPase com	95.96
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	95.95
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	95.93
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	95.91
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	95.91
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	95.89
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	95.88
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	95.88
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	95.88
TIGR00235	207	udk uridine kinase. Model contains a number of lon	95.88
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	95.87
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	95.87
PRK08233	182	hypothetical protein; Provisional	95.86
KOG2485|consensus	335		95.86
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	95.86
PF13173	128	AAA_14: AAA domain	95.86
cd03269	210	ABC_putative_ATPase This subfamily is involved in	95.83
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	95.82
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	95.81
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	95.79
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	95.78
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	95.78
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	95.77
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	95.76
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	95.76
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	95.75
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	95.74
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	95.74
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	95.73
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	95.73
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	95.72
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	95.72
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	95.72
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	95.71
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	95.71
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	95.69
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	95.69
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	95.69
PRK14530	215	adenylate kinase; Provisional	95.69
PRK00300	205	gmk guanylate kinase; Provisional	95.69
PRK03839	180	putative kinase; Provisional	95.69
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	95.68
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	95.67
PRK04195	482	replication factor C large subunit; Provisional	95.66
COG3638	258	ABC-type phosphate/phosphonate transport system, A	95.65
PRK01889	356	GTPase RsgA; Reviewed	95.65

>KOG0084|consensus

Probab=100.00  E-value=1.7e-43  Score=232.71  Aligned_cols=143  Identities=34%  Similarity=0.567  Sum_probs=137.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||+|+.||.++.|.+.+..|+|..+ .+.+.++++.+.++||||+||++|+.+...|+++++++|+|||+++.
T Consensus        15 iGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~   94 (205)
T KOG0084|consen   15 IGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQ   94 (205)
T ss_pred             ECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccH
Confidence            69999999999999999999999999999777 88899999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-EEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAG-FVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~  157 (157)
                      +||+.+.+|+.++..+....              +|.++||||+|+.+.+.++.++++.|+.+++++ |+|+|||++.|
T Consensus        95 ~SF~~v~~Wi~Ei~~~~~~~--------------v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~N  159 (205)
T KOG0084|consen   95 ESFNNVKRWIQEIDRYASEN--------------VPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTN  159 (205)
T ss_pred             HHhhhHHHHHHHhhhhccCC--------------CCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccC
Confidence            99999999999998888765              899999999999999999999999999999998 99999999875

>KOG0092|consensus

Probab=100.00  E-value=2.8e-42  Score=226.15  Aligned_cols=143  Identities=35%  Similarity=0.531  Sum_probs=136.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|+.+||||||+.||..++|.+...+|+|.-| .+.+.+++..+++.||||+||++|.++.+.|+++++++|+|||+++.
T Consensus        11 LG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~   90 (200)
T KOG0092|consen   11 LGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDE   90 (200)
T ss_pred             ECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccH
Confidence            69999999999999999999998899999666 89999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +||..++.|+..+.+..+..              +-+.|+|||+||.+.|++..+++..+++..|++|+|+|||||.|
T Consensus        91 ~SF~~aK~WvkeL~~~~~~~--------------~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~N  154 (200)
T KOG0092|consen   91 ESFEKAKNWVKELQRQASPN--------------IVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGEN  154 (200)
T ss_pred             HHHHHHHHHHHHHHhhCCCC--------------eEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccC
Confidence            99999999999999888744              77889999999999999999999999999999999999999987

>KOG0078|consensus

Probab=100.00  E-value=1.7e-41  Score=226.00  Aligned_cols=143  Identities=34%  Similarity=0.521  Sum_probs=137.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||+++||||+|+.+|.++.|...+..|+|..| .+++.++++.+.+++|||+||++|+.+...|+++++++++|||+++.
T Consensus        18 iGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne   97 (207)
T KOG0078|consen   18 IGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNE   97 (207)
T ss_pred             ECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccch
Confidence            69999999999999999999999999999777 88999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .||+++..|+..+.++....              +|.++||||+|+...|+|+.+.++++|.++|++|+|+|||+|.|
T Consensus        98 ~Sfeni~~W~~~I~e~a~~~--------------v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~N  161 (207)
T KOG0078|consen   98 KSFENIRNWIKNIDEHASDD--------------VVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFN  161 (207)
T ss_pred             HHHHHHHHHHHHHHhhCCCC--------------CcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCC
Confidence            99999999999998888764              99999999999999999999999999999999999999999987

>KOG0094|consensus

Probab=100.00  E-value=2.6e-41  Score=221.88  Aligned_cols=144  Identities=38%  Similarity=0.534  Sum_probs=138.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||+.+|||||||+||+.+.|...|.+|+|.+| .+++.+.+..+++++|||+||++|+.+.+.|++++.++|+|||+++.
T Consensus        28 lGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~  107 (221)
T KOG0094|consen   28 LGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDR  107 (221)
T ss_pred             EccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEecccc
Confidence            69999999999999999999999999999777 89999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .||++..+|++.++.......             +-+++||||.||.+.+++..++++..++++++.|.|+||+.|.|
T Consensus       108 ~Sfe~t~kWi~dv~~e~gs~~-------------viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~N  172 (221)
T KOG0094|consen  108 NSFENTSKWIEDVRRERGSDD-------------VIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGEN  172 (221)
T ss_pred             chHHHHHHHHHHHHhccCCCc-------------eEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCC
Confidence            999999999999998887654             88999999999999999999999999999999999999999987

>KOG0098|consensus

Probab=100.00  E-value=4.5e-41  Score=219.23  Aligned_cols=143  Identities=31%  Similarity=0.485  Sum_probs=136.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|+.|||||+|+.||++..|.+.+..|+|.+| ...+.++++.++++||||+||+.|+.....|++++.++|||||++.+
T Consensus        12 iGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r   91 (216)
T KOG0098|consen   12 IGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRR   91 (216)
T ss_pred             ECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccch
Confidence            69999999999999999999999999999777 88889999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++|..+..|+..+..+....              ..++|+|||+||...+.|+.++++.||+++|+.|+|+||++++|
T Consensus        92 ~sF~hL~~wL~D~rq~~~~N--------------mvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~  155 (216)
T KOG0098|consen   92 ESFNHLTSWLEDARQHSNEN--------------MVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAEN  155 (216)
T ss_pred             hhHHHHHHHHHHHHHhcCCC--------------cEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhh
Confidence            99999999999999887544              88999999999999999999999999999999999999999986

>KOG0394|consensus

Probab=100.00  E-value=1.7e-39  Score=211.40  Aligned_cols=147  Identities=29%  Similarity=0.452  Sum_probs=135.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|...+|...|..|++..+ .+.+.++++.+.++||||+||++|+++...+++++|-++++||++++
T Consensus        15 LGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~   94 (210)
T KOG0394|consen   15 LGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNP   94 (210)
T ss_pred             eCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCCh
Confidence            69999999999999999999999999999666 89999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC--CceecHHHHHHHHHHhC-CcEEEeccccCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM--ERMISYDEGKRLAESWK-AGFVEASAKQDD  156 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~--~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~  156 (157)
                      .||+.+..|..+++.+.....          ....|++|+|||.|+..  .++++.+.++.||.+.| +||||+|||.+.
T Consensus        95 ~Sfe~L~~Wr~EFl~qa~~~~----------Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~  164 (210)
T KOG0394|consen   95 KSFENLENWRKEFLIQASPQD----------PETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT  164 (210)
T ss_pred             hhhccHHHHHHHHHHhcCCCC----------CCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence            999999999999998877432          12399999999999965  38999999999999998 799999999987


Q ss_pred             C
Q psy1873         157 Y  157 (157)
Q Consensus       157 ~  157 (157)
                      |
T Consensus       165 N  165 (210)
T KOG0394|consen  165 N  165 (210)
T ss_pred             c
Confidence            6

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=1.1e-38  Score=215.50  Aligned_cols=142  Identities=25%  Similarity=0.424  Sum_probs=129.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||+++||||||+++|+.+.|...+.||++..+...+.+++..+.+++||++|+++|..+++.+++++|++|+|||+++++
T Consensus        11 vGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~   90 (182)
T cd04172          11 VGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE   90 (182)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHH
Confidence            69999999999999999999999999999888778889999999999999999999999999999999999999999999


Q ss_pred             hHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-c
Q psy1873          81 SFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM------------ERMISYDEGKRLAESWKA-G  146 (157)
Q Consensus        81 s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~  146 (157)
                      ||+.+ ..|+..+.....  .             .|++|||||+|+.+            .+.++.++++.+++++++ +
T Consensus        91 Sf~~~~~~w~~~i~~~~~--~-------------~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~  155 (182)
T cd04172          91 TLDSVLKKWKGEIQEFCP--N-------------TKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAAT  155 (182)
T ss_pred             HHHHHHHHHHHHHHHHCC--C-------------CCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCE
Confidence            99998 789888876542  2             89999999999854            346999999999999996 9


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      |+||||++|+|
T Consensus       156 ~~E~SAk~~~n  166 (182)
T cd04172         156 YIECSALQSEN  166 (182)
T ss_pred             EEECCcCCCCC
Confidence            99999999986

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0079|consensus

Probab=100.00  E-value=1.8e-39  Score=204.58  Aligned_cols=142  Identities=33%  Similarity=0.544  Sum_probs=135.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||+|+.+|..+.|...|..|+|..+ ..++.++|..++++|||++|+++|+.+...|+++.+++|+|||+++.
T Consensus        14 igDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~   93 (198)
T KOG0079|consen   14 IGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNG   93 (198)
T ss_pred             ecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcch
Confidence            69999999999999999999999999999766 78889999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +||.++.+|+.++...+..               +|-++||||.|..+.+.+..++++.|+...|+.+||+|||+++|
T Consensus        94 ESF~Nv~rWLeei~~ncds---------------v~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~N  156 (198)
T KOG0079|consen   94 ESFNNVKRWLEEIRNNCDS---------------VPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENEN  156 (198)
T ss_pred             hhhHhHHHHHHHHHhcCcc---------------ccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhccc
Confidence            9999999999999888764               99999999999999999999999999999999999999999986

>KOG0080|consensus

Probab=100.00  E-value=2.4e-39  Score=206.57  Aligned_cols=144  Identities=33%  Similarity=0.510  Sum_probs=135.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+.+|..+.|.+....|+|..| .+.+.+++..+.+-||||+||++|+.+.+.|++++.++|+|||++.+
T Consensus        17 IGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~R   96 (209)
T KOG0080|consen   17 IGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSR   96 (209)
T ss_pred             EccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccch
Confidence            69999999999999999999998888899777 89999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++|.++..|++++--+.....             +..++||||.|...+|.++.+++.+|++.+++.|+|||||+.+|
T Consensus        97 dtf~kLd~W~~Eld~Ystn~d-------------iikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~  161 (209)
T KOG0080|consen   97 DTFVKLDIWLKELDLYSTNPD-------------IIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTREN  161 (209)
T ss_pred             hhHHhHHHHHHHHHhhcCCcc-------------HhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhcc
Confidence            999999999999987776554             88899999999888899999999999999999999999999875

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=2.4e-38  Score=216.85  Aligned_cols=143  Identities=31%  Similarity=0.509  Sum_probs=129.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|+.+.|...+.+|++..+ .+.+.++++.+.+++||++|+++|..++..+++++|++|+|||++++
T Consensus         6 lG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~   85 (202)
T cd04120           6 IGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKK   85 (202)
T ss_pred             ECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCH
Confidence            69999999999999999999988999998655 67788999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW-KAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~  157 (157)
                      +||+.+..|+..+..... ..             +|++|||||+|+...+++...+++.+++.+ ++.|+||||++|+|
T Consensus        86 ~Sf~~l~~w~~~i~~~~~-~~-------------~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~g  150 (202)
T cd04120          86 ETFDDLPKWMKMIDKYAS-ED-------------AELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFN  150 (202)
T ss_pred             HHHHHHHHHHHHHHHhCC-CC-------------CcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence            999999999887654432 22             999999999999888899999999999886 78999999999986

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=4.1e-38  Score=211.71  Aligned_cols=142  Identities=30%  Similarity=0.485  Sum_probs=128.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|+++||||||+.+|+.+.|...+.+|++..+...+.+++..+.+.|||++|+++|..+++.++++++++|+|||+++++
T Consensus         7 ~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~   86 (176)
T cd04133           7 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRA   86 (176)
T ss_pred             ECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHH
Confidence            69999999999999999999989999999878777888999999999999999999999999999999999999999999


Q ss_pred             hHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc----------eecHHHHHHHHHHhCC-cEE
Q psy1873          81 SFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER----------MISYDEGKRLAESWKA-GFV  148 (157)
Q Consensus        81 s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~  148 (157)
                      ||+.+ ..|+..+.....  .             +|++|||||+|+.+.+          .+..+++..+++.+++ +|+
T Consensus        87 Sf~~~~~~w~~~i~~~~~--~-------------~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~  151 (176)
T cd04133          87 SYENVLKKWVPELRHYAP--N-------------VPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYI  151 (176)
T ss_pred             HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEE
Confidence            99998 689888865432  2             9999999999996543          4889999999999998 699


Q ss_pred             EeccccCCC
Q psy1873         149 EASAKQDDY  157 (157)
Q Consensus       149 e~Sa~~~~~  157 (157)
                      ||||++|+|
T Consensus       152 E~SAk~~~n  160 (176)
T cd04133         152 ECSSKTQQN  160 (176)
T ss_pred             ECCCCcccC
Confidence            999999986

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=4.5e-38  Score=212.08  Aligned_cols=142  Identities=23%  Similarity=0.392  Sum_probs=129.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|+++.|...+.||++..+...+.+++..+.+++||++|+++|..+++.++++++++|+|||+++++
T Consensus         7 vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~   86 (178)
T cd04131           7 VGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPE   86 (178)
T ss_pred             ECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChh
Confidence            69999999999999999999999999998888778889999999999999999999999999999999999999999999


Q ss_pred             hHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-c
Q psy1873          81 SFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM------------ERMISYDEGKRLAESWKA-G  146 (157)
Q Consensus        81 s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~  146 (157)
                      ||+.+ ..|+..+.....  .             +|++|||||+||.+            .++++.+++..+++++++ +
T Consensus        87 Sf~~~~~~w~~~i~~~~~--~-------------~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~  151 (178)
T cd04131          87 TLDSVLKKWRGEIQEFCP--N-------------TKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEI  151 (178)
T ss_pred             hHHHHHHHHHHHHHHHCC--C-------------CCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCE
Confidence            99996 789888876543  2             99999999999854            246899999999999997 8


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      |+||||++|+|
T Consensus       152 ~~E~SA~~~~~  162 (178)
T cd04131         152 YLECSAFTSEK  162 (178)
T ss_pred             EEECccCcCCc
Confidence            99999999974

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=9.3e-38  Score=212.08  Aligned_cols=142  Identities=26%  Similarity=0.399  Sum_probs=130.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+.+|..+.+...+.++++..+ ...+.+++..+.+++||++|+++|..+++.+++++|++|+|||++++
T Consensus        12 iG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~   91 (189)
T cd04121          12 VGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNR   91 (189)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCH
Confidence            69999999999999999999888888888666 56678899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++|+++..|+.++.....  .             +|++|||||+|+...+.++.++++.+++.++++|+||||++|+|
T Consensus        92 ~Sf~~~~~w~~~i~~~~~--~-------------~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~  154 (189)
T cd04121          92 WSFDGIDRWIKEIDEHAP--G-------------VPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFN  154 (189)
T ss_pred             HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence            999999999999966542  2             99999999999988888999999999999999999999999986

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=3.8e-37  Score=214.31  Aligned_cols=141  Identities=23%  Similarity=0.379  Sum_probs=128.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|+.+.|...+.||++..+...+.+++..+.++||||+|+++|..+++.++++++++|+|||+++++
T Consensus        19 vGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~   98 (232)
T cd04174          19 VGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPE   98 (232)
T ss_pred             ECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChH
Confidence            69999999999999999999999999999888777889999999999999999999999999999999999999999999


Q ss_pred             hHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-c
Q psy1873          81 SFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM------------ERMISYDEGKRLAESWKA-G  146 (157)
Q Consensus        81 s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~  146 (157)
                      ||+.+ ..|+..+.....  .             .|++|||||+|+..            .++++.++++.+|+++++ +
T Consensus        99 Sf~~~~~~w~~~i~~~~~--~-------------~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~  163 (232)
T cd04174          99 TVDSALKKWKAEIMDYCP--S-------------TRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEV  163 (232)
T ss_pred             HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCE
Confidence            99985 789888876542  2             89999999999864            367899999999999999 6


Q ss_pred             EEEeccccCC
Q psy1873         147 FVEASAKQDD  156 (157)
Q Consensus       147 ~~e~Sa~~~~  156 (157)
                      |+||||++|+
T Consensus       164 ~~EtSAktg~  173 (232)
T cd04174         164 YLECSAFTSE  173 (232)
T ss_pred             EEEccCCcCC
Confidence            9999999996

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=5.2e-37  Score=206.03  Aligned_cols=144  Identities=35%  Similarity=0.601  Sum_probs=131.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+.+.+...+.+|++..+...+.+++..+.+.+||++|++++..+++.++++++++|+|||+++++
T Consensus         8 vG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~   87 (172)
T cd04141           8 LGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRH   87 (172)
T ss_pred             ECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchh
Confidence            69999999999999999999888899999878778889999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ||+.+..|+..+........             +|+++||||+|+.+.++++.+++..+++.++++|+||||++|.|
T Consensus        88 Sf~~~~~~~~~i~~~~~~~~-------------~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~  151 (172)
T cd04141          88 SFQEASEFKKLITRVRLTED-------------IPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHY  151 (172)
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCC
Confidence            99999988877765433222             99999999999987788999999999999999999999999986

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=5.3e-37  Score=209.13  Aligned_cols=142  Identities=31%  Similarity=0.466  Sum_probs=126.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||+++||||||+.+|+.+.|...+.||++..+...+.+++..+.+++||++|+++|..+++.+++++|++|+|||+++++
T Consensus         9 vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~   88 (191)
T cd01875           9 VGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPS   88 (191)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHH
Confidence            69999999999999999999989999999877777788999999999999999999999999999999999999999999


Q ss_pred             hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhC-Cc
Q psy1873          81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWK-AG  146 (157)
Q Consensus        81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~  146 (157)
                      ||+.+. .|+..+.....  .             +|++|||||+||.+.            +.+..++++.+++.++ ++
T Consensus        89 Sf~~~~~~w~~~i~~~~~--~-------------~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~  153 (191)
T cd01875          89 SYENVRHKWHPEVCHHCP--N-------------VPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVK  153 (191)
T ss_pred             HHHHHHHHHHHHHHhhCC--C-------------CCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcE
Confidence            999996 57766654322  2             999999999999654            2467788999999999 59


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      |+||||++|+|
T Consensus       154 ~~e~SAk~g~~  164 (191)
T cd01875         154 YLECSALNQDG  164 (191)
T ss_pred             EEEeCCCCCCC
Confidence            99999999986

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG0093|consensus

Probab=100.00  E-value=1e-37  Score=196.43  Aligned_cols=143  Identities=34%  Similarity=0.544  Sum_probs=133.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++.||||||+.|+++..|...+.+|.|..+ .+++--.++.+.+++|||+|+++|+.+...++++++++|||||+++.
T Consensus        27 iGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNe  106 (193)
T KOG0093|consen   27 IGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE  106 (193)
T ss_pred             EccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCH
Confidence            69999999999999999999999999999777 55666677889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +||..++.|.-++....-..              +|++++|||||+.++|.++.+.++.+++++|..|||+|||.+.|
T Consensus       107 eSf~svqdw~tqIktysw~n--------------aqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~Nin  170 (193)
T KOG0093|consen  107 ESFNSVQDWITQIKTYSWDN--------------AQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENIN  170 (193)
T ss_pred             HHHHHHHHHHHHheeeeccC--------------ceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhccccccc
Confidence            99999999999987775443              99999999999999999999999999999999999999999875

>KOG0081|consensus

Probab=100.00  E-value=2.7e-38  Score=201.56  Aligned_cols=144  Identities=32%  Similarity=0.469  Sum_probs=133.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEEC---------CeEEEEEEEeCCCCccCcCchhhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMN---------NQDYDLKLVDTAGQDEYSIFPAQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~---------~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   70 (157)
                      +|++||||||+++++.+++|.....+|++..+ .+.+.++         ++.+.+++|||+||++|+++...+++++-++
T Consensus        15 LGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGF   94 (219)
T KOG0081|consen   15 LGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGF   94 (219)
T ss_pred             hccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccc
Confidence            69999999999999999999999999999777 6666653         4578899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA  150 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  150 (157)
                      +++||+++..||-+++.|+.++.-+.....             ..++++|||+||.+.++++.+++..+|+.+|+||||+
T Consensus        95 lLiFDlT~eqSFLnvrnWlSQL~~hAYcE~-------------PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfET  161 (219)
T KOG0081|consen   95 LLIFDLTSEQSFLNVRNWLSQLQTHAYCEN-------------PDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFET  161 (219)
T ss_pred             eEEEeccchHHHHHHHHHHHHHHHhhccCC-------------CCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeee
Confidence            999999999999999999999988877665             7799999999999999999999999999999999999


Q ss_pred             ccccCCC
Q psy1873         151 SAKQDDY  157 (157)
Q Consensus       151 Sa~~~~~  157 (157)
                      ||-+|.|
T Consensus       162 SA~tg~N  168 (219)
T KOG0081|consen  162 SACTGTN  168 (219)
T ss_pred             ccccCcC
Confidence            9999986

>KOG0087|consensus

Probab=100.00  E-value=2.1e-37  Score=205.82  Aligned_cols=143  Identities=33%  Similarity=0.469  Sum_probs=136.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||+++||||-|+.||..+.|.....+|+|.++ ...+.++++.+..+||||+||++|+++...|++++.++++|||++.+
T Consensus        20 iGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~   99 (222)
T KOG0087|consen   20 IGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRR   99 (222)
T ss_pred             eCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhH
Confidence            69999999999999999999988889999666 88899999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+|+++.+|+.+++.+....              +++++||||+||...+.++.++++.++...++.++|+||+++.|
T Consensus       100 ~Tfenv~rWL~ELRdhad~n--------------ivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tN  163 (222)
T KOG0087|consen  100 QTFENVERWLKELRDHADSN--------------IVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATN  163 (222)
T ss_pred             HHHHHHHHHHHHHHhcCCCC--------------eEEEEeecchhhhhccccchhhhHhHHHhcCceEEEeccccccc
Confidence            99999999999999998765              99999999999999999999999999999999999999999876

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=1.5e-36  Score=204.24  Aligned_cols=142  Identities=29%  Similarity=0.479  Sum_probs=126.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|+.+.|...+.||++..+...+.+++..+.+.+||++|++++..++..+++++|++|+|||+++++
T Consensus         7 vG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~   86 (175)
T cd01874           7 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS   86 (175)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHH
Confidence            69999999999999999999889999999878767788899999999999999999999999999999999999999999


Q ss_pred             hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhC-Cc
Q psy1873          81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWK-AG  146 (157)
Q Consensus        81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~  146 (157)
                      +|+.+. .|+..+.....  .             +|++|||||+|+.+.            +.+..++++.+++..+ +.
T Consensus        87 s~~~~~~~w~~~i~~~~~--~-------------~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~  151 (175)
T cd01874          87 SFENVKEKWVPEITHHCP--K-------------TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVK  151 (175)
T ss_pred             HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcE
Confidence            999997 47766654332  2             999999999998543            5688889999999888 69


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      |+||||++|+|
T Consensus       152 ~~e~SA~tg~~  162 (175)
T cd01874         152 YVECSALTQKG  162 (175)
T ss_pred             EEEecCCCCCC
Confidence            99999999987

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>KOG0086|consensus

Probab=100.00  E-value=1.8e-37  Score=196.76  Aligned_cols=143  Identities=31%  Similarity=0.472  Sum_probs=136.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|+.|+|||+|+++|++++|.+....|++.+| ...+.+.++.++++||||+||++|+.....|++++.+.++|||++++
T Consensus        15 iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsr   94 (214)
T KOG0086|consen   15 IGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR   94 (214)
T ss_pred             eccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccch
Confidence            69999999999999999999999999999877 88889999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++|+.+..|+..+....+..              +-++++|||.||...++++..++..||.++.+.+.|+||+||+|
T Consensus        95 dsfnaLtnWL~DaR~lAs~n--------------IvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeN  158 (214)
T KOG0086|consen   95 DSFNALTNWLTDARTLASPN--------------IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGEN  158 (214)
T ss_pred             hhHHHHHHHHHHHHhhCCCc--------------EEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeeccccccc
Confidence            99999999999998887665              78899999999999999999999999999999999999999997

>KOG0083|consensus

Probab=100.00  E-value=3e-38  Score=196.19  Aligned_cols=143  Identities=32%  Similarity=0.542  Sum_probs=135.2

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   78 (157)
                      +|++++|||+|+-||.++.|. ....+|++..| .+.+.++++++.+++||++||++|++....|++++|+++++||+.+
T Consensus         3 lgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydian   82 (192)
T KOG0083|consen    3 LGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIAN   82 (192)
T ss_pred             cccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeeccc
Confidence            699999999999999999984 66789999777 7888999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ..||++++.|+.+|.+.....              +.+.++|||+|+..++.++.++++++++++++||.|+|||||-|
T Consensus        83 kasfdn~~~wlsei~ey~k~~--------------v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~n  147 (192)
T KOG0083|consen   83 KASFDNCQAWLSEIHEYAKEA--------------VALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFN  147 (192)
T ss_pred             chhHHHHHHHHHHHHHHHHhh--------------HhHhhhccccccchhhccccchHHHHHHHHCCCceecccccccc
Confidence            999999999999999988765              88999999999999999999999999999999999999999975

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=7e-36  Score=198.45  Aligned_cols=144  Identities=44%  Similarity=0.719  Sum_probs=131.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++++.+.+...+.+|++..+...+.+++..+.+++||++|++++..++..++++++++++|||+++++
T Consensus         7 ~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~   86 (163)
T cd04136           7 LGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQS   86 (163)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHH
Confidence            69999999999999999999888889988777788889999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +|+.+..|+..+........             .|+++||||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus        87 s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  150 (163)
T cd04136          87 SFNDLQDLREQILRVKDTEN-------------VPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKIN  150 (163)
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCC
Confidence            99999999999887654333             99999999999977778888888889998899999999999986

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=5.5e-36  Score=199.86  Aligned_cols=143  Identities=31%  Similarity=0.482  Sum_probs=129.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+.+.+...+.+|++..+ ...+.+++..+.+.+||++|++++..++..++++++++|+|||++++
T Consensus         8 iG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~   87 (166)
T cd04122           8 IGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR   87 (166)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCH
Confidence            69999999999999999999888888888666 56677888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++|+.+..|+..+.......              .|+++||||+|+...+.+..+++..+++..+++++|+||++|+|
T Consensus        88 ~s~~~~~~~~~~~~~~~~~~--------------~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  151 (166)
T cd04122          88 STYNHLSSWLTDARNLTNPN--------------TVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGEN  151 (166)
T ss_pred             HHHHHHHHHHHHHHHhCCCC--------------CeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence            99999999998886654322              89999999999988888888999999999999999999999987

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=1.2e-35  Score=197.77  Aligned_cols=144  Identities=40%  Similarity=0.721  Sum_probs=131.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++++.+.+...+.+|++..+...+.+++..+.+.+||++|++++..+++.+++++|++++|||+++++
T Consensus         7 ~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~   86 (164)
T cd04175           7 LGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQS   86 (164)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHH
Confidence            69999999999999999999888889998877778888998999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +|+.+..|+..+........             .|+++||||+|+...+.+...++..+++.++++++++||++|.|
T Consensus        87 s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  150 (164)
T cd04175          87 TFNDLQDLREQILRVKDTED-------------VPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKIN  150 (164)
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCC
Confidence            99999999999987654333             99999999999987778888888899999999999999999986

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=9.4e-36  Score=206.34  Aligned_cols=142  Identities=21%  Similarity=0.375  Sum_probs=124.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|..+.|...|.||++..|...+.++++.+.+.+||++|++.|..+++.+++++|++|+|||+++++
T Consensus         7 vGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~   86 (222)
T cd04173           7 VGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPE   86 (222)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHH
Confidence            69999999999999999999999999999888778889999999999999999999999999999999999999999999


Q ss_pred             hHHHHHH-HHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-c
Q psy1873          81 SFEVVQI-LYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-G  146 (157)
Q Consensus        81 s~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~  146 (157)
                      +|+.+.. |...+.... .              .+|++|||||+|+...            .+++.+++..++++.|+ +
T Consensus        87 Sf~~i~~~w~~~~~~~~-~--------------~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~  151 (222)
T cd04173          87 TLDSVLKKWQGETQEFC-P--------------NAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVS  151 (222)
T ss_pred             HHHHHHHHHHHHHHhhC-C--------------CCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCE
Confidence            9999955 544443322 2              2999999999999542            24788899999999996 9


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      |+||||++++|
T Consensus       152 y~E~SAk~~~~  162 (222)
T cd04173         152 YVECSSRSSER  162 (222)
T ss_pred             EEEcCCCcCCc
Confidence            99999999874

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=1.5e-35  Score=197.01  Aligned_cols=143  Identities=30%  Similarity=0.488  Sum_probs=130.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|+.+.+...+.+|++..+ ...+.+++..+.+++||++|++++..++..+++++|++++|||++++
T Consensus         6 vG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~   85 (161)
T cd04117           6 IGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSE   85 (161)
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCH
Confidence            69999999999999999999888889998655 67788888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++|+.+..|+..+...... .             .|+++||||+|+.+.+.+..+++..+++..+++|+||||++|.|
T Consensus        86 ~sf~~~~~~~~~~~~~~~~-~-------------~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~  149 (161)
T cd04117          86 RSYQHIMKWVSDVDEYAPE-G-------------VQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSN  149 (161)
T ss_pred             HHHHHHHHHHHHHHHhCCC-C-------------CeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            9999999999988765432 2             99999999999988888888999999999999999999999986

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=3e-35  Score=200.19  Aligned_cols=144  Identities=44%  Similarity=0.702  Sum_probs=132.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..++++++++++|||+++++
T Consensus        11 iG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~   90 (189)
T PTZ00369         11 VGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRS   90 (189)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHH
Confidence            69999999999999999999888899998888888889999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +|+.+..|+..+........             +|+++||||+|+.+.+++...++..+++.++++++++||++|+|
T Consensus        91 s~~~~~~~~~~i~~~~~~~~-------------~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~g  154 (189)
T PTZ00369         91 SFEEIASFREQILRVKDKDR-------------VPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVN  154 (189)
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCC
Confidence            99999999998877654333             89999999999977778888889999999999999999999986

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=2.6e-35  Score=200.70  Aligned_cols=146  Identities=40%  Similarity=0.637  Sum_probs=130.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|+.+.+...+.+|++..+...+.+++..+.+++||++|+++|..++..+++++|++|+|||+++++
T Consensus         5 vG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~   84 (190)
T cd04144           5 LGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRS   84 (190)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHH
Confidence            69999999999999999999888889998777777788898899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +|+.+..|+..+.......           ....|+++||||+|+...+.+...++..+++.++++|+++||++|+|
T Consensus        85 s~~~~~~~~~~i~~~~~~~-----------~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~  150 (190)
T cd04144          85 TFERVERFREQIQRVKDES-----------AADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVN  150 (190)
T ss_pred             HHHHHHHHHHHHHHHhccc-----------CCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCC
Confidence            9999999998887664321           12289999999999987788888889999999999999999999986

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=4.4e-35  Score=196.99  Aligned_cols=142  Identities=29%  Similarity=0.463  Sum_probs=126.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+.+|+.+.+...+.+|++..+...+.++++.+.+.+||++|++++..+++.+++++|++|+|||+++++
T Consensus         7 iG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~   86 (174)
T cd01871           7 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPA   86 (174)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHH
Confidence            69999999999999999999999999998777777788999999999999999999999999999999999999999999


Q ss_pred             hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-c
Q psy1873          81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-G  146 (157)
Q Consensus        81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~  146 (157)
                      +|+.+. .|+..+.....  .             +|++|||||+|+.+.            +.++.+++..+++.++. +
T Consensus        87 sf~~~~~~~~~~~~~~~~--~-------------~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  151 (174)
T cd01871          87 SFENVRAKWYPEVRHHCP--N-------------TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK  151 (174)
T ss_pred             HHHHHHHHHHHHHHHhCC--C-------------CCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcE
Confidence            999996 57666654332  2             999999999999542            35888999999999995 9


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      |+||||++|+|
T Consensus       152 ~~e~Sa~~~~~  162 (174)
T cd01871         152 YLECSALTQKG  162 (174)
T ss_pred             EEEecccccCC
Confidence            99999999987

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=7.2e-35  Score=193.77  Aligned_cols=144  Identities=38%  Similarity=0.718  Sum_probs=130.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++++.+.+...+.+|++..+...+.+++..+.+++||++|+++|..++..+++++|++++|||+++++
T Consensus         7 ~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~   86 (163)
T cd04176           7 LGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQ   86 (163)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHH
Confidence            69999999999999999999888888888767778888998889999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +|+++..|+..+........             +|+++||||+|+...+.+...++..+++..+++++++||++|.|
T Consensus        87 s~~~~~~~~~~~~~~~~~~~-------------~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  150 (163)
T cd04176          87 TFQDIKPMRDQIVRVKGYEK-------------VPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTM  150 (163)
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCC
Confidence            99999999998887654333             99999999999977677777788899988899999999999976

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=6e-35  Score=194.70  Aligned_cols=143  Identities=34%  Similarity=0.546  Sum_probs=128.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|.++++...+.+|++..+ ...+..++..+.+++||++|++++..++..++++++++++|||++++
T Consensus         7 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~   86 (165)
T cd01865           7 IGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE   86 (165)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCH
Confidence            69999999999999999999888889988655 55667788889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++++.+..|+..+.......              +|++|||||+|+.+.+.+..+++..+++.++++++++||++|.|
T Consensus        87 ~s~~~~~~~~~~i~~~~~~~--------------~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  150 (165)
T cd01865          87 ESFNAVQDWSTQIKTYSWDN--------------AQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENIN  150 (165)
T ss_pred             HHHHHHHHHHHHHHHhCCCC--------------CCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence            99999999998886544322              89999999999987777888889999999999999999999986

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=2.7e-35  Score=195.57  Aligned_cols=143  Identities=28%  Similarity=0.540  Sum_probs=133.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|+++||||||+++|.++.+...+.+|++ +.+...+.+++..+.+++||++|++++..++..+++++|++|+|||++++
T Consensus         5 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~   84 (162)
T PF00071_consen    5 VGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDE   84 (162)
T ss_dssp             EESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBH
T ss_pred             ECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            69999999999999999999999999996 44588889999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +||+.+..|+..+.......              +|++|+|||.|+.+.++++.++++.+++.++++|+|+||+++.|
T Consensus        85 ~S~~~~~~~~~~i~~~~~~~--------------~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~  148 (162)
T PF00071_consen   85 ESFENLKKWLEEIQKYKPED--------------IPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGEN  148 (162)
T ss_dssp             HHHHTHHHHHHHHHHHSTTT--------------SEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTT
T ss_pred             cccccccccccccccccccc--------------ccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCC
Confidence            99999999999998887632              99999999999988889999999999999999999999999876

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=9.2e-35  Score=198.86  Aligned_cols=140  Identities=21%  Similarity=0.339  Sum_probs=123.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|+.+.+...+.+|++..+ ...+.+++..+.+.|||++|+++|..+++.++++++++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            79999999999999999999888899998555 67778888999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+|+.+..|+..+.....  .             +|++|||||+|+.. +.+..+. ..+++..++.|+||||++|+|
T Consensus        81 ~S~~~i~~w~~~i~~~~~--~-------------~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~  141 (200)
T smart00176       81 VTYKNVPNWHRDLVRVCE--N-------------IPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYN  141 (200)
T ss_pred             HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCC
Confidence            999999999999987542  2             99999999999854 4555443 467888899999999999986

Ran is involved in the active transport of proteins through nuclear pores.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=1.4e-34  Score=198.66  Aligned_cols=147  Identities=27%  Similarity=0.360  Sum_probs=128.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEEC-CeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMN-NQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   78 (157)
                      ||++|||||||+++|+++.+...+.+|++..+ ...+.++ +..+.+.+||++|++++..+++.++++++++|+|||+++
T Consensus         6 vG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~   85 (201)
T cd04107           6 IGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTR   85 (201)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCC
Confidence            69999999999999999999888899998655 5667777 788999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEEeccccCCC
Q psy1873          79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK-AGFVEASAKQDDY  157 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~  157 (157)
                      +++|+.+..|+..+.......          ....+|++|||||+|+.+.+.+..+++..+++..+ .+|+|+||++|+|
T Consensus        86 ~~s~~~~~~~~~~i~~~~~~~----------~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~  155 (201)
T cd04107          86 PSTFEAVLKWKADLDSKVTLP----------NGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGIN  155 (201)
T ss_pred             HHHHHHHHHHHHHHHHhhccc----------CCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCC
Confidence            999999999998886543211          01238999999999997667888899999999999 5999999999986

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=7e-35  Score=196.78  Aligned_cols=144  Identities=31%  Similarity=0.453  Sum_probs=127.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEEC----------CeEEEEEEEeCCCCccCcCchhhhccCCCE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMN----------NQDYDLKLVDTAGQDEYSIFPAQYSMDIHG   69 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   69 (157)
                      +|++|||||||+++|..+.+...+.+|++..+ ...+.+.          +..+.+++||++|++++..++..+++++|+
T Consensus        10 vG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   89 (180)
T cd04127          10 LGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMG   89 (180)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCE
Confidence            69999999999999999999989999998655 4445443          456889999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEE
Q psy1873          70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVE  149 (157)
Q Consensus        70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e  149 (157)
                      +++|||++++++|+.+..|+..+........             .|+++||||+|+.+.+.+..+++..+++.+++++++
T Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-------------~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e  156 (180)
T cd04127          90 FLLIFDLTNEQSFLNVRNWMSQLQTHAYCEN-------------PDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFE  156 (180)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCC-------------CcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEE
Confidence            9999999999999999999998876543322             899999999999887888889999999999999999


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      +||++|+|
T Consensus       157 ~Sak~~~~  164 (180)
T cd04127         157 TSAATGTN  164 (180)
T ss_pred             EeCCCCCC
Confidence            99999986

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=1.2e-34  Score=197.29  Aligned_cols=142  Identities=32%  Similarity=0.445  Sum_probs=124.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|.++.+...+.+|++..+...+.+++..+.+++||++|++.+..+++.++++++++|+|||+++++
T Consensus         6 vG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~   85 (189)
T cd04134           6 LGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPD   85 (189)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHH
Confidence            69999999999999999999888899998878777788888899999999999999999999999999999999999999


Q ss_pred             hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhC-Cc
Q psy1873          81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER------------MISYDEGKRLAESWK-AG  146 (157)
Q Consensus        81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~  146 (157)
                      +|+.+. .|+..+.....  .             .|++|||||+|+...+            .+..+++..+++..+ ++
T Consensus        86 sf~~~~~~~~~~i~~~~~--~-------------~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  150 (189)
T cd04134          86 SLENVESKWLGEIREHCP--G-------------VKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALR  150 (189)
T ss_pred             HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCE
Confidence            999996 58777765432  2             9999999999996543            356778888988887 69


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      |+||||++|+|
T Consensus       151 ~~e~SAk~~~~  161 (189)
T cd04134         151 YLECSAKLNRG  161 (189)
T ss_pred             EEEccCCcCCC
Confidence            99999999986

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=9e-35  Score=196.68  Aligned_cols=142  Identities=23%  Similarity=0.407  Sum_probs=123.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+.+.|...+.+|++..+ .+.+.+++..+.+++||++|+++|..+++.++++++++++|||++++
T Consensus         6 lG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~   85 (182)
T cd04128           6 LGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRK   85 (182)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCH
Confidence            69999999999999999999988999998655 67788899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC-----CceecHHHHHHHHHHhCCcEEEecccc
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM-----ERMISYDEGKRLAESWKAGFVEASAKQ  154 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~e~Sa~~  154 (157)
                      ++|+++..|+..+.......              .| ++||||+|+..     ......++++.+++.+++++++|||++
T Consensus        86 ~s~~~i~~~~~~~~~~~~~~--------------~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~  150 (182)
T cd04128          86 STLNSIKEWYRQARGFNKTA--------------IP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSH  150 (182)
T ss_pred             HHHHHHHHHHHHHHHhCCCC--------------CE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCC
Confidence            99999999999887654321              66 57899999842     112224678889999999999999999


Q ss_pred             CCC
Q psy1873         155 DDY  157 (157)
Q Consensus       155 ~~~  157 (157)
                      |+|
T Consensus       151 g~~  153 (182)
T cd04128         151 SIN  153 (182)
T ss_pred             CCC
Confidence            986

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=2.4e-34  Score=191.83  Aligned_cols=146  Identities=36%  Similarity=0.621  Sum_probs=129.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++++++.+...+.+|++..+...+..+...+.+++||++|++++..++..+++.++++|+|||+++++
T Consensus         7 vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~   86 (165)
T cd04140           7 FGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQ   86 (165)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHH
Confidence            69999999999999999999888889988777777778888899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..+.......           ...+|+++||||+|+...+.+...++..++...+++|+||||++|+|
T Consensus        87 s~~~~~~~~~~i~~~~~~~-----------~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~  152 (165)
T cd04140          87 SLEELKPIYELICEIKGNN-----------IEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHN  152 (165)
T ss_pred             HHHHHHHHHHHHHHHhcCC-----------CCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCC
Confidence            9999999988776654321           12399999999999977778888888999998999999999999986

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>KOG0088|consensus

Probab=100.00  E-value=2.2e-36  Score=192.72  Aligned_cols=143  Identities=34%  Similarity=0.478  Sum_probs=135.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|..=||||||+-||++++|.....+|+-..| .+.+.+.++...++||||+||++|..+.+.|+++++++++|||++|+
T Consensus        19 LGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDr   98 (218)
T KOG0088|consen   19 LGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDR   98 (218)
T ss_pred             EcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccch
Confidence            58888999999999999999999999988766 88899999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +||+.++.|..++.......              +-++|||||+||.+++.++..+++.+++.-|+.|+|+||+.+.|
T Consensus        99 dSFqKVKnWV~Elr~mlGne--------------i~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~G  162 (218)
T KOG0088|consen   99 DSFQKVKNWVLELRTMLGNE--------------IELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVG  162 (218)
T ss_pred             HHHHHHHHHHHHHHHHhCCe--------------eEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccC
Confidence            99999999999998777655              88999999999999999999999999999999999999999875

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=2e-34  Score=191.77  Aligned_cols=144  Identities=47%  Similarity=0.766  Sum_probs=131.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|+...+...+.+++..+.+++||++|++++..++..++++++++++|||+++++
T Consensus         6 ~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~   85 (164)
T smart00173        6 LGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQ   85 (164)
T ss_pred             ECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHH
Confidence            69999999999999999999888888888777778888898999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +|+.+..|+..+........             .|+++||||+|+...+.+..+++..+++.++++++++||++|+|
T Consensus        86 s~~~~~~~~~~i~~~~~~~~-------------~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  149 (164)
T smart00173       86 SFEEIKKFREQILRVKDRDD-------------VPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVN  149 (164)
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCC
Confidence            99999999988877654333             89999999999987778888889999999999999999999986

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>KOG0091|consensus

Probab=100.00  E-value=7.5e-36  Score=191.11  Aligned_cols=144  Identities=35%  Similarity=0.495  Sum_probs=129.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEE-ECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTR-MNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~-~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   78 (157)
                      ||++-||||||++.|.++++..-..||+|.++ ...+. -++..+++++|||+||++|+++.++|++++-+++++||+++
T Consensus        14 igdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditn   93 (213)
T KOG0091|consen   14 IGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITN   93 (213)
T ss_pred             EcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccc
Confidence            69999999999999999999999999999554 33333 36778999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhc-cccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          79 HKSFEVVQILYDKLLDMTG-KIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++||+.+..|+++..-... ...             +-+++||+|+||...|+++.+++++++.++|+.|+|+||++|.|
T Consensus        94 r~sfehv~~w~~ea~m~~q~P~k-------------~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~N  160 (213)
T KOG0091|consen   94 RESFEHVENWVKEAAMATQGPDK-------------VVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCN  160 (213)
T ss_pred             hhhHHHHHHHHHHHHHhcCCCCe-------------eEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCc
Confidence            9999999999998766655 332             66789999999999999999999999999999999999999987

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=2.8e-34  Score=190.29  Aligned_cols=143  Identities=40%  Similarity=0.649  Sum_probs=129.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..++++++++++|||++++.
T Consensus         7 iG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~   86 (162)
T cd04138           7 VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRK   86 (162)
T ss_pred             ECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHH
Confidence            69999999999999999999888889988878788888998889999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +|+.+..|+..+........             .|++||+||+|+.. +.+...++..+++.++++++++||++|+|
T Consensus        87 s~~~~~~~~~~i~~~~~~~~-------------~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  149 (162)
T cd04138          87 SFEDIHTYREQIKRVKDSDD-------------VPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQG  149 (162)
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCC
Confidence            99999999999887654333             99999999999865 56777888899999999999999999986

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=2e-34  Score=193.12  Aligned_cols=144  Identities=26%  Similarity=0.396  Sum_probs=127.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|+++.|...|.+|++..+ ...+.+++..+.+++||++|+++|..++..+++++|++++|||++++
T Consensus         6 vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~   85 (170)
T cd04108           6 VGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDV   85 (170)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCH
Confidence            69999999999999999999999999998666 57778889889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM--ISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++++.+..|+..++.......             .|+++||||+|+.+.+.  +..+++..+++.++++|+++||++|.|
T Consensus        86 ~s~~~~~~~~~~~~~~~~~~~-------------~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~  152 (170)
T cd04108          86 ASLEHTRQWLEDALKENDPSS-------------VLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGEN  152 (170)
T ss_pred             HHHHHHHHHHHHHHHhcCCCC-------------CeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCC
Confidence            999999999999876654333             78999999999865433  346677888888899999999999986

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=2.5e-34  Score=193.08  Aligned_cols=142  Identities=30%  Similarity=0.515  Sum_probs=126.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+++...+...+.+++..+.+++||++|++.+..+++.+++++|++|+|||+++++
T Consensus         4 ~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~   83 (174)
T smart00174        4 VGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPA   83 (174)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHH
Confidence            69999999999999999999888888888777777888999999999999999999999999999999999999999999


Q ss_pred             hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-c
Q psy1873          81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-G  146 (157)
Q Consensus        81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~  146 (157)
                      +|+.+. .|+..+.....  .             +|++|||||+|+...            +.++.+++..+++.+++ +
T Consensus        84 s~~~~~~~~~~~i~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  148 (174)
T smart00174       84 SFENVKEKWYPEVKHFCP--N-------------TPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVK  148 (174)
T ss_pred             HHHHHHHHHHHHHHhhCC--C-------------CCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcE
Confidence            999995 57777765432  2             999999999998642            34788889999999997 9


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      |+||||++|+|
T Consensus       149 ~~e~Sa~~~~~  159 (174)
T smart00174      149 YLECSALTQEG  159 (174)
T ss_pred             EEEecCCCCCC
Confidence            99999999986

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=2.7e-34  Score=191.94  Aligned_cols=143  Identities=34%  Similarity=0.551  Sum_probs=129.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+++||++|++++..++..+++++|++++|||++++
T Consensus         9 vG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~   88 (167)
T cd01867           9 IGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDE   88 (167)
T ss_pred             ECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCH
Confidence            69999999999999999999999999998665 56777888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++|+.+..|+..+...... .             +|+++||||+|+.+.+.+..+++..++..++++++|+||++|.|
T Consensus        89 ~s~~~~~~~~~~i~~~~~~-~-------------~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  152 (167)
T cd01867          89 KSFENIRNWMRNIEEHASE-D-------------VERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANIN  152 (167)
T ss_pred             HHHHhHHHHHHHHHHhCCC-C-------------CcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            9999999999988765432 2             89999999999987778888889999999999999999999976

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=2.7e-34  Score=191.42  Aligned_cols=148  Identities=31%  Similarity=0.495  Sum_probs=131.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.+|++..+ .+.+.+++..+.+++||++|++.+..+++.++++++++|+|||++++
T Consensus         6 vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~   85 (168)
T cd04119           6 MGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDR   85 (168)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCH
Confidence            69999999999999999999889999998666 67788889999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++++.+..|+..+........         .....|+++|+||+|+.+.+.+..++...++...+++++++||++|+|
T Consensus        86 ~s~~~~~~~~~~~~~~~~~~~---------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  154 (168)
T cd04119          86 QSFEALDSWLKEMKQEGGPHG---------NMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEG  154 (168)
T ss_pred             HHHHhHHHHHHHHHHhccccc---------cCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence            999999999999987654310         012299999999999976677888889899999999999999999986

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=3.8e-34  Score=190.85  Aligned_cols=143  Identities=32%  Similarity=0.560  Sum_probs=128.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||++++.++.+...+.+|.+..+ ...+.+++..+.+++||++|++++..++..++++++++|+|||++++
T Consensus         8 ~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   87 (166)
T cd01869           8 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ   87 (166)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCH
Confidence            69999999999999999999888888888555 56778888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++|+.+..|+..+.......              .|++++|||+|+...+.+..+++..+++.++++++++||++|+|
T Consensus        88 ~s~~~l~~~~~~~~~~~~~~--------------~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  151 (166)
T cd01869          88 ESFNNVKQWLQEIDRYASEN--------------VNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATN  151 (166)
T ss_pred             HHHHhHHHHHHHHHHhCCCC--------------CcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcC
Confidence            99999999999887654222              89999999999987778888999999999999999999999986

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=7.4e-34  Score=188.87  Aligned_cols=144  Identities=40%  Similarity=0.651  Sum_probs=130.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++++++.+...+.+|++..+.....+++..+.+.+||++|++++..++..+++++|++++|||++++.
T Consensus         8 ~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~   87 (164)
T cd04145           8 VGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRG   87 (164)
T ss_pred             ECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence            69999999999999999988888888888777777788998899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +|+.+..|+..+........             .|++|++||+|+...+.+...++..+++.++++++++||++|.|
T Consensus        88 s~~~~~~~~~~~~~~~~~~~-------------~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  151 (164)
T cd04145          88 SFEEVDKFHTQILRVKDRDE-------------FPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLN  151 (164)
T ss_pred             HHHHHHHHHHHHHHHhCCCC-------------CCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCC
Confidence            99999999998887654333             89999999999987777888889999999999999999999986

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=6.1e-34  Score=197.37  Aligned_cols=146  Identities=30%  Similarity=0.401  Sum_probs=129.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccce-EEEEEEECC-eEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENT-FVKTTRMNN-QDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   78 (157)
                      ||++|||||||+++|+++.+...+.+|++.. +...+.+++ ..+.+++||++|++.+..++..+++++|++|+|||+++
T Consensus         6 vG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~   85 (215)
T cd04109           6 LGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTN   85 (215)
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCC
Confidence            6999999999999999999998999999844 466677754 57899999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++|+.+..|+..+........           ..+|+++||||+|+...+++..+++..+++.++++++++||++|+|
T Consensus        86 ~~s~~~~~~w~~~l~~~~~~~~-----------~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~g  153 (215)
T cd04109          86 SQSFENLEDWYSMVRKVLKSSE-----------TQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDR  153 (215)
T ss_pred             HHHHHHHHHHHHHHHHhccccC-----------CCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence            9999999999999887654211           1278999999999987788888999999999999999999999986

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>KOG0097|consensus

Probab=100.00  E-value=5.2e-35  Score=183.61  Aligned_cols=143  Identities=31%  Similarity=0.476  Sum_probs=134.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||+-|||||+|+.+|.+.+|+.....|++..+ ...+.+.++++.++|||++||++|+.....|++++.+.++|||++.+
T Consensus        17 igdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrr   96 (215)
T KOG0097|consen   17 IGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR   96 (215)
T ss_pred             EccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhh
Confidence            68999999999999999999999999999777 77888999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +.++.+..|+..........              ..++++|||.||...+.++.++++.|+.++|+.|.|+|||+|+|
T Consensus        97 stynhlsswl~dar~ltnpn--------------t~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~n  160 (215)
T KOG0097|consen   97 STYNHLSSWLTDARNLTNPN--------------TVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQN  160 (215)
T ss_pred             hhhhhHHHHHhhhhccCCCc--------------eEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCc
Confidence            99999999998877665443              77899999999999999999999999999999999999999986

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=8.4e-34  Score=193.63  Aligned_cols=140  Identities=23%  Similarity=0.316  Sum_probs=115.6

Q ss_pred             CCCCCCChhhhHh-hhhcc-----cccccccCCcc--ceEEEE--------EEECCeEEEEEEEeCCCCccCcCchhhhc
Q psy1873           1 MGYRSVGKSSLSI-QFVDG-----QFVDSYDPTIE--NTFVKT--------TRMNNQDYDLKLVDTAGQDEYSIFPAQYS   64 (157)
Q Consensus         1 vG~~~~GKssli~-~~~~~-----~~~~~~~~t~~--~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   64 (157)
                      ||++|||||||+. ++.++     .+...+.||++  +.+...        ..++++.+.+++|||+|++.  .+.+.++
T Consensus         8 vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~~~~~~~   85 (195)
T cd01873           8 VGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--KDRRFAY   85 (195)
T ss_pred             ECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--hhhcccC
Confidence            6999999999995 66544     34567788986  334322        26789999999999999976  3567789


Q ss_pred             cCCCEEEEEEECCChhhHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC----------------
Q psy1873          65 MDIHGYVLVYSITSHKSFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM----------------  127 (157)
Q Consensus        65 ~~~~~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~----------------  127 (157)
                      +++|++|+|||++++.||+.+. .|+..+.....  .             +|+++||||+|+.+                
T Consensus        86 ~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~--~-------------~piilvgNK~DL~~~~~~~~~~~~~~~~~~  150 (195)
T cd01873          86 GRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP--R-------------VPVILVGCKLDLRYADLDEVNRARRPLARP  150 (195)
T ss_pred             CCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC--C-------------CCEEEEEEchhccccccchhhhcccccccc
Confidence            9999999999999999999997 58777755432  2             89999999999863                


Q ss_pred             ---CceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873         128 ---ERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus       128 ---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                         .+.++.++++.+++.++++|+||||++|+|
T Consensus       151 ~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~  183 (195)
T cd01873         151 IKNADILPPETGRAVAKELGIPYYETSVVTQFG  183 (195)
T ss_pred             cccCCccCHHHHHHHHHHhCCEEEEcCCCCCCC
Confidence               478899999999999999999999999987

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=9.6e-34  Score=188.70  Aligned_cols=143  Identities=32%  Similarity=0.474  Sum_probs=129.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+++||++|++++..+++.++++++++|+|||++++
T Consensus         9 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~   88 (165)
T cd01868           9 IGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKK   88 (165)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCH
Confidence            69999999999999999998878888888555 67778888888999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              +|++|||||+|+...+.+..++...+++..+++++|+||++|+|
T Consensus        89 ~s~~~~~~~~~~~~~~~~~~--------------~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  152 (165)
T cd01868          89 QTFENVERWLKELRDHADSN--------------IVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTN  152 (165)
T ss_pred             HHHHHHHHHHHHHHHhCCCC--------------CeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence            99999999999887765432              89999999999987778888899999998899999999999986

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=1e-33  Score=195.58  Aligned_cols=144  Identities=31%  Similarity=0.501  Sum_probs=128.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEE-CCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRM-NNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   78 (157)
                      +|++|||||||+++|+++.+...+.+|++..+ ...+.+ ++..+.+++||++|++++..++..+++++|++++|||+++
T Consensus         8 vG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~   87 (211)
T cd04111           8 IGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITN   87 (211)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCC
Confidence            69999999999999999999888888888544 566666 4677899999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++|+.+..|+..+........             +|++|||||+|+...+.+..+++..+++.++++|+|+||++|+|
T Consensus        88 ~~Sf~~l~~~~~~i~~~~~~~~-------------~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~  153 (211)
T cd04111          88 RESFEHVHDWLEEARSHIQPHR-------------PVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDN  153 (211)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCC-------------CeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCC
Confidence            9999999999999887654433             88999999999988788888999999999999999999999986

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0395|consensus

Probab=100.00  E-value=6.5e-34  Score=193.52  Aligned_cols=144  Identities=46%  Similarity=0.758  Sum_probs=136.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|.+|||||+|+.+|+...|...|.||+++.|.+.+.+++..+.+.|+|++|++.+..+...++.+++++++||+++++.
T Consensus         9 lG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~   88 (196)
T KOG0395|consen    9 LGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRS   88 (196)
T ss_pred             ECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ||+.+..++.+++.......             +|+++||||+|+...+.++.++++.++..++++|+|+||+.+.|
T Consensus        89 SF~~~~~l~~~I~r~~~~~~-------------~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~  152 (196)
T KOG0395|consen   89 SFEEAKQLREQILRVKGRDD-------------VPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYN  152 (196)
T ss_pred             HHHHHHHHHHHHHHhhCcCC-------------CCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcC
Confidence            99999999999966665554             89999999999988899999999999999999999999998753

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=1.6e-33  Score=193.10  Aligned_cols=142  Identities=32%  Similarity=0.492  Sum_probs=128.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..++++++++++|||++++
T Consensus        12 vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~   91 (199)
T cd04110          12 IGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNG   91 (199)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCH
Confidence            69999999999999999999888889988555 56777888888999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++|+.+..|+..+......               .|++|||||+|+.+.+.+..+++..+++.++++++++||++|.|
T Consensus        92 ~s~~~~~~~~~~i~~~~~~---------------~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~g  154 (199)
T cd04110          92 ESFVNVKRWLQEIEQNCDD---------------VCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENIN  154 (199)
T ss_pred             HHHHHHHHHHHHHHHhCCC---------------CCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcC
Confidence            9999999999987665422               89999999999987777888899999999999999999999986

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=1.9e-33  Score=188.88  Aligned_cols=142  Identities=29%  Similarity=0.460  Sum_probs=126.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+.+.+...+.+|..+.+...+.+++..+.+++||++|++++..+++.+++++|++|+|||+++++
T Consensus         6 ~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~   85 (173)
T cd04130           6 VGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPS   85 (173)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHH
Confidence            69999999999999999999988999987777777888998899999999999999999999999999999999999999


Q ss_pred             hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-c
Q psy1873          81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM------------ERMISYDEGKRLAESWKA-G  146 (157)
Q Consensus        81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~  146 (157)
                      +|+.+. .|+..+.....  .             .|++++|||+|+..            .+.+..+++..+++.+++ +
T Consensus        86 sf~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~  150 (173)
T cd04130          86 SFQNISEKWIPEIRKHNP--K-------------APIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACE  150 (173)
T ss_pred             HHHHHHHHHHHHHHhhCC--C-------------CCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCe
Confidence            999985 67777764322  2             89999999999853            457788899999999998 9


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      |+|+||++|.|
T Consensus       151 ~~e~Sa~~~~~  161 (173)
T cd04130         151 YIECSALTQKN  161 (173)
T ss_pred             EEEEeCCCCCC
Confidence            99999999987

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=1.5e-33  Score=195.15  Aligned_cols=139  Identities=24%  Similarity=0.397  Sum_probs=119.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|+.+.|.. +.+|++..+... ..  ..+.+.+||++|++.|..++..++++++++|+|||+++++
T Consensus         6 vG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~-~~--~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~   81 (220)
T cd04126           6 LGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK-QW--GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQ   81 (220)
T ss_pred             ECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE-Ee--eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHH
Confidence            6999999999999999999875 567887544221 11  4578999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC-------------------CceecHHHHHHHHH
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM-------------------ERMISYDEGKRLAE  141 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~-------------------~~~~~~~~~~~~~~  141 (157)
                      +|+.+..|+..+......              .+|++|||||+|+.+                   .+++..+++..+++
T Consensus        82 Sf~~l~~~~~~l~~~~~~--------------~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~  147 (220)
T cd04126          82 SLEELEDRFLGLTDTANE--------------DCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYK  147 (220)
T ss_pred             HHHHHHHHHHHHHHhcCC--------------CCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHH
Confidence            999999999888764322              289999999999965                   57899999999999


Q ss_pred             HhC--------------CcEEEeccccCCC
Q psy1873         142 SWK--------------AGFVEASAKQDDY  157 (157)
Q Consensus       142 ~~~--------------~~~~e~Sa~~~~~  157 (157)
                      +.+              ++|+||||++|+|
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~  177 (220)
T cd04126         148 RINKYKMLDEDLSPAAEKMCFETSAKTGYN  177 (220)
T ss_pred             HhCccccccccccccccceEEEeeCCCCCC
Confidence            887              6899999999986

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=1.9e-33  Score=191.20  Aligned_cols=143  Identities=33%  Similarity=0.498  Sum_probs=129.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+++||++|++.+..++..+++++|++|+|||++++
T Consensus         6 ~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~   85 (188)
T cd04125           6 IGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQ   85 (188)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCH
Confidence            69999999999999999999887888988655 56778888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++|+.+..|+..+.......              .|+++||||+|+.+.+.+...++..+++..+++++|+||++|.|
T Consensus        86 ~s~~~i~~~~~~i~~~~~~~--------------~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~  149 (188)
T cd04125          86 ESFENLKFWINEINRYAREN--------------VIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSIN  149 (188)
T ss_pred             HHHHHHHHHHHHHHHhCCCC--------------CeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            99999999999887654332              89999999999987788888899999999999999999999976

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=2.2e-33  Score=186.00  Aligned_cols=138  Identities=24%  Similarity=0.426  Sum_probs=118.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+.+|+.+.|...+.++ +..+...+.++++.+.+.+||++|++.     ..+++++|++++|||+++++
T Consensus         6 vG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~   79 (158)
T cd04103           6 VGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEA   79 (158)
T ss_pred             ECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHH
Confidence            699999999999999999887766555 445567788999999999999999975     35678899999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC--CCceecHHHHHHHHHHh-CCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH--MERMISYDEGKRLAESW-KAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~  157 (157)
                      ||+++..|+..+........             +|+++||||.|+.  ..+++..++++.++++. +++|+||||++|+|
T Consensus        80 sf~~~~~~~~~i~~~~~~~~-------------~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~  146 (158)
T cd04103          80 SFQTVYNLYHQLSSYRNISE-------------IPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLN  146 (158)
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            99999999999876653232             8999999999985  35788889999999887 48999999999987

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=1.4e-33  Score=195.83  Aligned_cols=140  Identities=23%  Similarity=0.348  Sum_probs=122.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++++.+.+...+.+|++..+ ...+..++..+.+.+||++|+++|..++..++++++++|+|||++++
T Consensus        19 vG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~   98 (219)
T PLN03071         19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR   98 (219)
T ss_pred             ECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCH
Confidence            69999999999999999999988999998555 56677778889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++|+.+..|+..+.....  .             +|++|||||+|+.. +.+..++. .+++..+++|+||||++|.|
T Consensus        99 ~s~~~i~~w~~~i~~~~~--~-------------~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~  159 (219)
T PLN03071         99 LTYKNVPTWHRDLCRVCE--N-------------IPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN  159 (219)
T ss_pred             HHHHHHHHHHHHHHHhCC--C-------------CcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCC
Confidence            999999999999876542  2             99999999999854 44455555 77788889999999999986

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=1.6e-33  Score=187.00  Aligned_cols=142  Identities=34%  Similarity=0.505  Sum_probs=127.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEEC--CeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMN--NQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSIT   77 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~   77 (157)
                      +|++|||||||+++|+++.+...+.+|++..+ ...+.++  +..+.+++||++|++++..++..++++++++++|||++
T Consensus         6 vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~   85 (162)
T cd04106           6 VGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTT   85 (162)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECC
Confidence            69999999999999999999888889988665 5666666  77889999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          78 SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        78 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++++++.+..|+..+.....  .             +|+++|+||.|+...+.+..+++..+++.++++++++||++|.|
T Consensus        86 ~~~s~~~l~~~~~~~~~~~~--~-------------~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  150 (162)
T cd04106          86 DRESFEAIESWKEKVEAECG--D-------------IPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFN  150 (162)
T ss_pred             CHHHHHHHHHHHHHHHHhCC--C-------------CCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence            99999999999888765432  2             99999999999987778888889999999999999999999976

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=2.7e-33  Score=187.40  Aligned_cols=146  Identities=25%  Similarity=0.376  Sum_probs=127.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+++||++|++++..++..+++.+|++++|||++++
T Consensus        11 vG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   90 (170)
T cd04116          11 LGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDS   90 (170)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCH
Confidence            69999999999999999999888888888555 66778899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~  157 (157)
                      ++++.+..|...++.......          ...+|+++||||+|+. .+.+..+++.++++.++. +++|+||++|+|
T Consensus        91 ~s~~~~~~~~~~~~~~~~~~~----------~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  158 (170)
T cd04116          91 QSFQNLSNWKKEFIYYADVKE----------PESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATN  158 (170)
T ss_pred             HHHHhHHHHHHHHHHhccccc----------CCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCC
Confidence            999999999998876543210          1238999999999986 567788899999999985 899999999986

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=3e-33  Score=187.40  Aligned_cols=142  Identities=30%  Similarity=0.485  Sum_probs=127.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCc-CchhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYS-IFPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~ilv~d~~~   78 (157)
                      +|++|||||||+++|+.+.+...+.++++..+ ...+.+++..+.+.+||++|++++. .++..+++++|++++|||+++
T Consensus         8 vG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~   87 (170)
T cd04115           8 IGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTN   87 (170)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCC
Confidence            69999999999999999998888888888555 6677888989999999999999887 578899999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccC
Q psy1873          79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD  155 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  155 (157)
                      +++|+.+..|+..+........             +|+++|+||+|+...++++.+++..+++..+++|+|+||+++
T Consensus        88 ~~s~~~~~~~~~~~~~~~~~~~-------------~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  151 (170)
T cd04115          88 MASFHSLPSWIEECEQHSLPNE-------------VPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDP  151 (170)
T ss_pred             HHHHHhHHHHHHHHHHhcCCCC-------------CCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCC
Confidence            9999999999988887654333             999999999999888888889999999999999999999994

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=3.4e-33  Score=185.38  Aligned_cols=143  Identities=31%  Similarity=0.469  Sum_probs=128.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++++++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..+++.++++++++++|||++++
T Consensus         6 ~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   85 (161)
T cd04113           6 IGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNR   85 (161)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCH
Confidence            69999999999999999999888888887555 56677888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++++.+..|+..+.......              +|++|++||+|+...+.+..+++..+++.++++++++||++|+|
T Consensus        86 ~s~~~~~~~~~~~~~~~~~~--------------~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  149 (161)
T cd04113          86 TSFEALPTWLSDARALASPN--------------IVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGEN  149 (161)
T ss_pred             HHHHHHHHHHHHHHHhCCCC--------------CeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence            99999999998886554332              89999999999987778888999999999999999999999986

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=3.3e-33  Score=190.47  Aligned_cols=143  Identities=31%  Similarity=0.547  Sum_probs=127.7

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   78 (157)
                      ||++|||||||+++|+.+.+. ..+.+|++..+ ...+.+++..+.+.+||++|++++..++..+++++|++|+|||+++
T Consensus         6 vG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~   85 (191)
T cd04112           6 LGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITN   85 (191)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCC
Confidence            699999999999999999885 46778887655 5567888999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++++++..|+..+.......              +|+++||||+|+...+.+..+++..+++.++++|+|+||++|+|
T Consensus        86 ~~s~~~~~~~~~~i~~~~~~~--------------~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~  150 (191)
T cd04112          86 KASFDNIRAWLTEIKEYAQED--------------VVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLN  150 (191)
T ss_pred             HHHHHHHHHHHHHHHHhCCCC--------------CcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            999999999999888765432              99999999999977778888889999999999999999999986

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=2.9e-33  Score=190.02  Aligned_cols=142  Identities=27%  Similarity=0.452  Sum_probs=123.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEEC-CeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMN-NQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+... +..+.+++||++|++++..+++.+++++|++|+|||++++
T Consensus         6 vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~   85 (187)
T cd04132           6 VGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNP   85 (187)
T ss_pred             ECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCH
Confidence            699999999999999999998888899887776566665 7788999999999999999999999999999999999999


Q ss_pred             hhHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC----ceecHHHHHHHHHHhCC-cEEEeccc
Q psy1873          80 KSFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME----RMISYDEGKRLAESWKA-GFVEASAK  153 (157)
Q Consensus        80 ~s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~e~Sa~  153 (157)
                      ++|+.+. .|+..+.....  .             +|+++||||+|+...    +.+...++..++..+++ +++++||+
T Consensus        86 ~s~~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  150 (187)
T cd04132          86 TSLDNVEDKWFPEVNHFCP--G-------------TPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAK  150 (187)
T ss_pred             HHHHHHHHHHHHHHHHhCC--C-------------CCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCC
Confidence            9999996 57666654322  2             899999999998653    35778889999999998 99999999


Q ss_pred             cCCC
Q psy1873         154 QDDY  157 (157)
Q Consensus       154 ~~~~  157 (157)
                      +|+|
T Consensus       151 ~~~~  154 (187)
T cd04132         151 TMEN  154 (187)
T ss_pred             CCCC
Confidence            9986

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0095|consensus

Probab=100.00  E-value=2.3e-34  Score=182.03  Aligned_cols=143  Identities=31%  Similarity=0.490  Sum_probs=134.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||+.|||||+|++||.++-|+.....|++..+ .+++.+++.++.++|||++||++|+++.++|++.++++|++||++-.
T Consensus        13 vgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscq   92 (213)
T KOG0095|consen   13 VGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ   92 (213)
T ss_pred             EccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccC
Confidence            69999999999999999999988889999777 89999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+|+-+.+|+.++.+.....              +--++||||.|+.+.++++..-++.|++....-|.|+||++-+|
T Consensus        93 psfdclpewlreie~yan~k--------------vlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~n  156 (213)
T KOG0095|consen   93 PSFDCLPEWLREIEQYANNK--------------VLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADN  156 (213)
T ss_pred             cchhhhHHHHHHHHHHhhcc--------------eEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhh
Confidence            99999999999998888654              77789999999999999999999999999889999999998775

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=3.1e-33  Score=193.84  Aligned_cols=143  Identities=31%  Similarity=0.466  Sum_probs=130.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+++||++|++++..++..++++++++|+|||++++
T Consensus        18 vG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~   97 (216)
T PLN03110         18 IGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR   97 (216)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCCh
Confidence            69999999999999999998878889988665 67788899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+|+.+..|+..+.......              +|+++||||+|+...+.+..+++..++..++++++|+||++|+|
T Consensus        98 ~s~~~~~~~~~~~~~~~~~~--------------~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~  161 (216)
T PLN03110         98 QTFDNVQRWLRELRDHADSN--------------IVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATN  161 (216)
T ss_pred             HHHHHHHHHHHHHHHhCCCC--------------CeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            99999999999887664322              99999999999988888888999999999999999999999986

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=6.2e-33  Score=185.50  Aligned_cols=143  Identities=32%  Similarity=0.500  Sum_probs=128.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++++++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..+...+++.+|++++|||++++
T Consensus        10 vG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~   89 (168)
T cd01866          10 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR   89 (168)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCH
Confidence            69999999999999999988887778877555 56677888888999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++++.+..|+..+.......              +|++|||||.|+.+.+.+..+++..++...+++++|+||++|+|
T Consensus        90 ~s~~~~~~~~~~~~~~~~~~--------------~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  153 (168)
T cd01866          90 ETFNHLTSWLEDARQHSNSN--------------MTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASN  153 (168)
T ss_pred             HHHHHHHHHHHHHHHhCCCC--------------CcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            99999999999887764322              99999999999987778888899999999999999999999986

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=4.9e-33  Score=185.40  Aligned_cols=143  Identities=30%  Similarity=0.475  Sum_probs=127.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++++|++++|||++++
T Consensus         9 vG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~   88 (165)
T cd01864           9 IGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRR   88 (165)
T ss_pred             ECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCH
Confidence            69999999999999999998888888887544 56778888888999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              +|+++|+||+|+...+.+..+++..+++.+++ .++|+||++|+|
T Consensus        89 ~s~~~~~~~~~~i~~~~~~~--------------~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  153 (165)
T cd01864          89 SSFESVPHWIEEVEKYGASN--------------VVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQN  153 (165)
T ss_pred             HHHHhHHHHHHHHHHhCCCC--------------CcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCC
Confidence            99999999999987654322              99999999999987778888889999999886 789999999986

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=8.8e-33  Score=184.75  Aligned_cols=144  Identities=38%  Similarity=0.695  Sum_probs=130.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|.++.+...+.+|++..+...+.+++..+.+++||++|+++|..++..+++.++++++|||+++++
T Consensus         7 iG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~   86 (168)
T cd04177           7 LGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEA   86 (168)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHH
Confidence            69999999999999999999888889988777788888999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK-AGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~  157 (157)
                      +++.+..|...+........             .|+++++||.|+...+.+..++...+++..+ ++++++||++|.|
T Consensus        87 s~~~~~~~~~~i~~~~~~~~-------------~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~  151 (168)
T cd04177          87 SLNELGELREQVLRIKDSDN-------------VPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTN  151 (168)
T ss_pred             HHHHHHHHHHHHHHhhCCCC-------------CCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCC
Confidence            99999999888876543333             9999999999998777888888888888888 7999999999986

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=5.1e-33  Score=185.31  Aligned_cols=143  Identities=34%  Similarity=0.573  Sum_probs=125.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccC-cCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++++.+.+...+.++....+...+.++++.+.+++||++|+..+ ......+++++|++|+|||++++
T Consensus         5 vG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~   84 (165)
T cd04146           5 LGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDR   84 (165)
T ss_pred             ECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCH
Confidence            69999999999999999988888888887667777788999999999999999863 45677889999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhc-cccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCC
Q psy1873          80 KSFEVVQILYDKLLDMTG-KIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD  156 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  156 (157)
                      ++|+.+..|+..+..... ...             +|+++||||+|+...+.+..+++..+++..+++|+|+||++|.
T Consensus        85 ~s~~~~~~~~~~~~~~~~~~~~-------------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~  149 (165)
T cd04146          85 SSFDEISQLKQLIREIKKRDRE-------------IPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDY  149 (165)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCc
Confidence            999999999888776543 222             9999999999997777888889999999999999999999984

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=7.6e-33  Score=194.94  Aligned_cols=152  Identities=28%  Similarity=0.492  Sum_probs=128.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|+.+.+...+.+|+++.+.+.+.+++..+.+.|||++|++.|..++..++.++|++|+|||+++++
T Consensus         6 lG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~   85 (247)
T cd04143           6 LGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRE   85 (247)
T ss_pred             ECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHH
Confidence            69999999999999999999888899998777778889999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-hCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES-WKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~  157 (157)
                      +|+.+..|+.++........     ........+|++|||||+|+...+.+..+++..++.. .++.++++||++|+|
T Consensus        86 Sf~~i~~~~~~I~~~k~~~~-----~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~g  158 (247)
T cd04143          86 SFEEVCRLREQILETKSCLK-----NKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSN  158 (247)
T ss_pred             HHHHHHHHHHHHHHhhcccc-----cccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence            99999999999976532100     0000123499999999999977677888888887754 367899999999986

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.9e-32  Score=182.86  Aligned_cols=140  Identities=23%  Similarity=0.368  Sum_probs=121.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++++.+.+...+.+|++..+ ...+..++..+.+.+||++|++.+..++..++..+|++|+|||++++
T Consensus         6 vG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   85 (166)
T cd00877           6 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSR   85 (166)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCH
Confidence            69999999999999999988888889988554 55566678889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++++.+..|+..+.....  .             +|+++||||+|+.. +.+. .+...+++..+++++|+||++|+|
T Consensus        86 ~s~~~~~~~~~~i~~~~~--~-------------~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~  146 (166)
T cd00877          86 VTYKNVPNWHRDLVRVCG--N-------------IPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYN  146 (166)
T ss_pred             HHHHHHHHHHHHHHHhCC--C-------------CcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCC
Confidence            999999999999877654  2             99999999999863 3443 345667777788999999999986

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=2.1e-32  Score=187.24  Aligned_cols=144  Identities=30%  Similarity=0.494  Sum_probs=120.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccce-EEEEEEECCeEEEEEEEeCCCCccCcCc--------hhhhccCCCEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENT-FVKTTRMNNQDYDLKLVDTAGQDEYSIF--------PAQYSMDIHGYV   71 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~~~~~i   71 (157)
                      +|++|||||||+++|+++.+...+.||++.. +...+.++++.+.+++||++|...+...        ....++++|++|
T Consensus         6 vG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~ii   85 (198)
T cd04142           6 LGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFI   85 (198)
T ss_pred             ECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEE
Confidence            6999999999999999999988888888744 4566778898899999999997665422        234578999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHHhc--cccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-HhCCcEE
Q psy1873          72 LVYSITSHKSFEVVQILYDKLLDMTG--KIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE-SWKAGFV  148 (157)
Q Consensus        72 lv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~  148 (157)
                      +|||+++++||+.+..|+..+.....  ...             +|++|||||+|+...+.+..+++..++. .++++|+
T Consensus        86 lv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~-------------~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (198)
T cd04142          86 LVYDICSPDSFHYVKLLRQQILETRPAGNKE-------------PPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYL  152 (198)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcccCCCC-------------CCEEEEEECccccccccccHHHHHHHHHHhcCCcEE
Confidence            99999999999999999999887652  222             9999999999997777777777777754 5689999


Q ss_pred             EeccccCCC
Q psy1873         149 EASAKQDDY  157 (157)
Q Consensus       149 e~Sa~~~~~  157 (157)
                      ||||++|.|
T Consensus       153 e~Sak~g~~  161 (198)
T cd04142         153 ECSAKYNWH  161 (198)
T ss_pred             EecCCCCCC
Confidence            999999986

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=2.1e-32  Score=188.98  Aligned_cols=143  Identities=33%  Similarity=0.488  Sum_probs=129.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|+...+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++++|++++|||++++
T Consensus        12 vG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~   91 (210)
T PLN03108         12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR   91 (210)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcH
Confidence            69999999999999999988888888888665 66778888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++|+.+..|+..+.......              .|+++++||+|+...+.+..+++..+++.++++|+|+||+++.|
T Consensus        92 ~s~~~l~~~~~~~~~~~~~~--------------~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  155 (210)
T PLN03108         92 ETFNHLASWLEDARQHANAN--------------MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN  155 (210)
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            99999999998876554322              89999999999988788899999999999999999999999986

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=5.4e-32  Score=181.69  Aligned_cols=142  Identities=27%  Similarity=0.468  Sum_probs=123.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+.+.+...+.+|+...+...+.+++..+.+.+||++|++.+..++..++++++++++|||+++++
T Consensus         6 ~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~   85 (174)
T cd04135           6 VGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPA   85 (174)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHH
Confidence            69999999999999999999888888888777667788898899999999999999999999999999999999999999


Q ss_pred             hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-c
Q psy1873          81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-G  146 (157)
Q Consensus        81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~  146 (157)
                      +|+.+. .|+..+... .. .             .|++++|||+|+.+.            +.+..+++..+++..+. +
T Consensus        86 s~~~~~~~~~~~l~~~-~~-~-------------~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  150 (174)
T cd04135          86 SFQNVKEEWVPELKEY-AP-N-------------VPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHC  150 (174)
T ss_pred             HHHHHHHHHHHHHHhh-CC-C-------------CCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCE
Confidence            999996 465555433 22 2             999999999998543            36778889999999996 8


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      |+||||++|+|
T Consensus       151 ~~e~Sa~~~~g  161 (174)
T cd04135         151 YVECSALTQKG  161 (174)
T ss_pred             EEEecCCcCCC
Confidence            99999999987

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=5.3e-32  Score=184.71  Aligned_cols=142  Identities=28%  Similarity=0.456  Sum_probs=124.6

Q ss_pred             CCCCCCChhhhHhhhhcccccc-cccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVD-SYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   78 (157)
                      +|++|||||||+++|+.+.+.. .+.+|++..+ ...+.+++..+.+.+||++|++++..++..+++++|++++|||+++
T Consensus         6 vG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~   85 (193)
T cd04118           6 LGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTD   85 (193)
T ss_pred             ECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCC
Confidence            6999999999999999999874 6888988766 5678889999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC----ceecHHHHHHHHHHhCCcEEEecccc
Q psy1873          79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME----RMISYDEGKRLAESWKAGFVEASAKQ  154 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~e~Sa~~  154 (157)
                      +++|+.+..|+..+.....  .             .|+++|+||+|+.+.    +.+...++..++...+++++++||++
T Consensus        86 ~~s~~~~~~~~~~i~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  150 (193)
T cd04118          86 SSSFERAKFWVKELQNLEE--H-------------CKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKT  150 (193)
T ss_pred             HHHHHHHHHHHHHHHhcCC--C-------------CCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            9999999999988765432  2             899999999998532    45666778888988899999999999


Q ss_pred             CCC
Q psy1873         155 DDY  157 (157)
Q Consensus       155 ~~~  157 (157)
                      |+|
T Consensus       151 ~~g  153 (193)
T cd04118         151 GQN  153 (193)
T ss_pred             CCC
Confidence            986

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=4.3e-32  Score=179.94  Aligned_cols=143  Identities=38%  Similarity=0.543  Sum_probs=127.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+++||++|++.+..++..++++++++++|||++++
T Consensus         6 iG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   85 (161)
T cd01861           6 LGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNR   85 (161)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCH
Confidence            69999999999999999998877788887544 77778888888999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++|+.+..|+..+...... .             .|+++++||+|+...+.+..++...+++..+++++++||++|+|
T Consensus        86 ~s~~~~~~~~~~~~~~~~~-~-------------~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  149 (161)
T cd01861          86 QSFDNTDKWIDDVRDERGN-D-------------VIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHN  149 (161)
T ss_pred             HHHHHHHHHHHHHHHhCCC-C-------------CEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCC
Confidence            9999999999988765433 2             99999999999976677888889999999999999999999986

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=6.1e-32  Score=179.57  Aligned_cols=139  Identities=22%  Similarity=0.361  Sum_probs=119.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccc-eEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIEN-TFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|+.+.+...+.++.+. .+...+.++++.+.+.+||++|++++..+++.+++++|++|+|||++++
T Consensus         6 vG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   85 (161)
T cd04124           6 LGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRK   85 (161)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCH
Confidence            699999999999999999988777777764 3466677888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.....               +.|+++|+||+|+...  . ..+...+++..+++++++||++|.|
T Consensus        86 ~s~~~~~~~~~~i~~~~~---------------~~p~ivv~nK~Dl~~~--~-~~~~~~~~~~~~~~~~~~Sa~~~~g  145 (161)
T cd04124          86 ITYKNLSKWYEELREYRP---------------EIPCIVVANKIDLDPS--V-TQKKFNFAEKHNLPLYYVSAADGTN  145 (161)
T ss_pred             HHHHHHHHHHHHHHHhCC---------------CCcEEEEEECccCchh--H-HHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            999999999988865432               1899999999998432  2 3446677777889999999999986

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=7.4e-32  Score=179.14  Aligned_cols=143  Identities=34%  Similarity=0.512  Sum_probs=129.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++++++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++++|++++|||++++
T Consensus         7 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   86 (163)
T cd01860           7 LGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSE   86 (163)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCH
Confidence            69999999999999999998877788888655 67788899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++++.+..|+..+...... .             +|+++++||+|+...+.+...+...++..++++++++||++|.|
T Consensus        87 ~s~~~~~~~~~~~~~~~~~-~-------------~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  150 (163)
T cd01860          87 ESFEKAKSWVKELQRNASP-N-------------IIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGEN  150 (163)
T ss_pred             HHHHHHHHHHHHHHHhCCC-C-------------CeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence            9999999999998877542 2             99999999999977777888889999999999999999999986

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>KOG0393|consensus

Probab=100.00  E-value=7e-33  Score=185.36  Aligned_cols=142  Identities=30%  Similarity=0.487  Sum_probs=131.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEEC-CeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMN-NQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||+..+|||+|+..+..+.|+..|.||+-+.|...+.++ ++.+.+.+|||+||++|..+++.-+..+|+||+||+++++
T Consensus        10 VGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p   89 (198)
T KOG0393|consen   10 VGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSP   89 (198)
T ss_pred             ECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCCh
Confidence            799999999999999999999999999999999999995 9999999999999999999999999999999999999999


Q ss_pred             hhHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-
Q psy1873          80 KSFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-  145 (157)
Q Consensus        80 ~s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-  145 (157)
                      +||+++ ..|+.++...++.               +|+++||+|.||.+.            ..++.++++.++++.|+ 
T Consensus        90 ~S~~nv~~kW~pEi~~~cp~---------------vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~  154 (198)
T KOG0393|consen   90 ESFENVKSKWIPEIKHHCPN---------------VPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAV  154 (198)
T ss_pred             hhHHHHHhhhhHHHHhhCCC---------------CCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcc
Confidence            999998 7888888877754               999999999999743            36888999999999995 


Q ss_pred             cEEEeccccCCC
Q psy1873         146 GFVEASAKQDDY  157 (157)
Q Consensus       146 ~~~e~Sa~~~~~  157 (157)
                      .|+||||++.+|
T Consensus       155 ~y~EcSa~tq~~  166 (198)
T KOG0393|consen  155 KYLECSALTQKG  166 (198)
T ss_pred             eeeeehhhhhCC
Confidence            899999999876

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=3.5e-32  Score=182.08  Aligned_cols=141  Identities=23%  Similarity=0.305  Sum_probs=121.8

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   78 (157)
                      ||++|||||||+++|+++.+. ..+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++++|++|+|||+++
T Consensus        10 vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~   89 (169)
T cd01892          10 LGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSD   89 (169)
T ss_pred             ECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCC
Confidence            699999999999999999998 88999998766 4667888888889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEeccccCCC
Q psy1873          79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVEASAKQDDY  157 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~  157 (157)
                      +++++.+..|+..+...   ..             +|+++|+||+|+.+.+.+...+...+++.+++ .++++||++|+|
T Consensus        90 ~~s~~~~~~~~~~~~~~---~~-------------~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (169)
T cd01892          90 PKSFSYCAEVYKKYFML---GE-------------IPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDS  153 (169)
T ss_pred             HHHHHHHHHHHHHhccC---CC-------------CeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCcc
Confidence            99999998888765321   12             99999999999976555555567788888887 579999999986

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=8.6e-32  Score=178.85  Aligned_cols=143  Identities=37%  Similarity=0.554  Sum_probs=127.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|.+..+...+.++++..+ ...+..++..+.+.+||++|++.+..++..+++.+|++|+|||++++
T Consensus         6 ~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~   85 (164)
T smart00175        6 IGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNR   85 (164)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCH
Confidence            69999999999999999988877778887555 56777888888999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              +|+++++||+|+...+.+..+++..+++.++++++|+||++|+|
T Consensus        86 ~s~~~~~~~l~~~~~~~~~~--------------~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  149 (164)
T smart00175       86 ESFENLKNWLKELREYADPN--------------VVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTN  149 (164)
T ss_pred             HHHHHHHHHHHHHHHhCCCC--------------CeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            99999999998887765432              99999999999877677888889999999999999999999986

Rab GTPases are implicated in vesicle trafficking.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=9.5e-32  Score=178.86  Aligned_cols=142  Identities=27%  Similarity=0.389  Sum_probs=123.0

Q ss_pred             CCCCCCChhhhHhhhhcc--cccccccCCccceE-EEEEEEC-CeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEEC
Q psy1873           1 MGYRSVGKSSLSIQFVDG--QFVDSYDPTIENTF-VKTTRMN-NQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSI   76 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~--~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~   76 (157)
                      ||++|||||||++++..+  .+...+.+|++..+ ...+.++ +..+.+.+||++|++.+..++..+++++|++++|||+
T Consensus         6 vG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   85 (164)
T cd04101           6 VGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDV   85 (164)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEEC
Confidence            699999999999999865  67788889988554 4555554 5678999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCC
Q psy1873          77 TSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD  156 (157)
Q Consensus        77 ~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  156 (157)
                      +++++++.+..|+..+.....  .             .|+++||||+|+.+.+++...++..++..++++++++||++|.
T Consensus        86 ~~~~s~~~~~~~~~~~~~~~~--~-------------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  150 (164)
T cd04101          86 SNKASFENCSRWVNKVRTASK--H-------------MPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGV  150 (164)
T ss_pred             cCHHHHHHHHHHHHHHHHhCC--C-------------CCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            999999999999988876542  2             8999999999997777778777888888888999999999998


Q ss_pred             C
Q psy1873         157 Y  157 (157)
Q Consensus       157 ~  157 (157)
                      |
T Consensus       151 g  151 (164)
T cd04101         151 G  151 (164)
T ss_pred             C
Confidence            6

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=100.00  E-value=2.3e-31  Score=176.73  Aligned_cols=144  Identities=36%  Similarity=0.652  Sum_probs=130.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++++...+...+.++++..+......++..+.+.+||++|+.++..++..+++.+++++++||++++.
T Consensus         6 ~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~   85 (164)
T cd04139           6 VGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDME   85 (164)
T ss_pred             ECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHH
Confidence            69999999999999999999888888888778778888989999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +|+.+..|+..+........             +|+++|+||+|+...+.....+...+++.++++++++||++|+|
T Consensus        86 s~~~~~~~~~~~~~~~~~~~-------------~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  149 (164)
T cd04139          86 SFTATAEFREQILRVKDDDN-------------VPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQN  149 (164)
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCC
Confidence            99999999999988754333             99999999999976566777888889999999999999999986

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=2.1e-31  Score=185.24  Aligned_cols=142  Identities=32%  Similarity=0.457  Sum_probs=122.4

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhcc-CCCEEEEEEECC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM-DIHGYVLVYSIT   77 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~~ilv~d~~   77 (157)
                      +|++|||||||+++|+.+.+. ..+.++.+ +.+...+.+++..+.+.+||++|++  ..+...++. ++|++++|||++
T Consensus         6 vG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~t   83 (221)
T cd04148           6 LGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVT   83 (221)
T ss_pred             ECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECC
Confidence            699999999999999988886 67777776 5557788888989999999999998  334455666 999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          78 SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        78 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++.+|+.+..|+..+........             +|+++|+||+|+...+.+..+++..++..++++|+|+||++|.|
T Consensus        84 d~~S~~~~~~~~~~l~~~~~~~~-------------~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~g  150 (221)
T cd04148          84 DRSSFERASELRIQLRRNRQLED-------------RPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHN  150 (221)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCC-------------CCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCC
Confidence            99999999999988876543223             99999999999988888888889999999999999999999986

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=4.2e-31  Score=175.27  Aligned_cols=143  Identities=32%  Similarity=0.504  Sum_probs=126.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+++||++|++.+..++..+++.+|++++|||++++
T Consensus         6 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   85 (161)
T cd01863           6 IGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRR   85 (161)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCH
Confidence            69999999999999999988777778888655 45567788888999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++++.+..|+..+........             .|++++|||+|+. .+.+..++...++...+++++++||++|+|
T Consensus        86 ~s~~~~~~~~~~i~~~~~~~~-------------~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  149 (161)
T cd01863          86 DTFTNLETWLNELETYSTNND-------------IVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDG  149 (161)
T ss_pred             HHHHhHHHHHHHHHHhCCCCC-------------CcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCC
Confidence            999999999988877765444             9999999999986 456667889999999999999999999986

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.98  E-value=2.4e-31  Score=182.03  Aligned_cols=155  Identities=21%  Similarity=0.200  Sum_probs=123.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEEC-----CeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMN-----NQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVY   74 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   74 (157)
                      ||+++||||||+++|+++.|...+.+|++..+ .+.+.++     ++.+.+++||++|+++|..+++.++++++++|+||
T Consensus         6 vGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVy   85 (202)
T cd04102           6 VGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVH   85 (202)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEE
Confidence            69999999999999999999988999998655 4445553     57789999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHHhccccCCC-----CCCCCCCCCCCcEEEEEeCCCCCCCceecHHH----HHHHHHHhCC
Q psy1873          75 SITSHKSFEVVQILYDKLLDMTGKIQNSS-----VKSPTSCVSSVPIVLVGNKKDLHMERMISYDE----GKRLAESWKA  145 (157)
Q Consensus        75 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~----~~~~~~~~~~  145 (157)
                      |+++++||+++..|+..+...........     ..........+|++|||||+|+.+++.+..+.    ...++++.|+
T Consensus        86 Dvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~  165 (202)
T cd04102          86 DLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNA  165 (202)
T ss_pred             ECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCC
Confidence            99999999999999999986542110000     00000112348999999999997766665553    4567899999


Q ss_pred             cEEEeccccC
Q psy1873         146 GFVEASAKQD  155 (157)
Q Consensus       146 ~~~e~Sa~~~  155 (157)
                      +.++.++++.
T Consensus       166 ~~i~~~c~~~  175 (202)
T cd04102         166 EEINLNCTNG  175 (202)
T ss_pred             ceEEEecCCc
Confidence            9999999865

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PLN03118 Rab family protein; Provisional

Probab=99.98  E-value=4.8e-31  Score=182.37  Aligned_cols=143  Identities=31%  Similarity=0.503  Sum_probs=122.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|+.+.+. .+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++++|++|+|||++++
T Consensus        20 vG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~   98 (211)
T PLN03118         20 IGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRR   98 (211)
T ss_pred             ECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCH
Confidence            699999999999999988764 5667777555 56677888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHh-ccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMT-GKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++|+.+..+|...+... ....             .|+++||||+|+...+.+..+++..++..++++|+|+||++|+|
T Consensus        99 ~sf~~~~~~~~~~~~~~~~~~~-------------~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~  164 (211)
T PLN03118         99 ETFTNLSDVWGKEVELYSTNQD-------------CVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTREN  164 (211)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            99999987555544432 2222             89999999999987778888889999999999999999999986

>cd04123 Rab21 Rab21 subfamily

Probab=99.98  E-value=5.3e-31  Score=174.55  Aligned_cols=143  Identities=36%  Similarity=0.554  Sum_probs=126.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.+++...+ ...+.+.+..+.+.+||++|++.+..+++.+++++|++++|||++++
T Consensus         6 ~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~   85 (162)
T cd04123           6 LGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDA   85 (162)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCH
Confidence            69999999999999999988777667776444 56667778888999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++++.+..|+..+...... .             +|+++++||+|+...+++..++...+++..+++++++||++|+|
T Consensus        86 ~s~~~~~~~~~~i~~~~~~-~-------------~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g  149 (162)
T cd04123          86 DSFQKVKKWIKELKQMRGN-N-------------ISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKG  149 (162)
T ss_pred             HHHHHHHHHHHHHHHhCCC-C-------------CeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            9999999998888766543 2             99999999999987778888888889999999999999999986

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.98  E-value=7.2e-31  Score=176.39  Aligned_cols=142  Identities=32%  Similarity=0.508  Sum_probs=122.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.++++.+.+.+||++|++++..++..++.++|++++|||+++++
T Consensus         7 iG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~   86 (175)
T cd01870           7 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD   86 (175)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHH
Confidence            69999999999999999999888899998777677788888899999999999999999989999999999999999999


Q ss_pred             hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-c
Q psy1873          81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-G  146 (157)
Q Consensus        81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~  146 (157)
                      +|+.+. .|+..+.....  .             .|+++|+||+|+.+.            ..+...++++++...+. +
T Consensus        87 s~~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~  151 (175)
T cd01870          87 SLENIPEKWTPEVKHFCP--N-------------VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFG  151 (175)
T ss_pred             HHHHHHHHHHHHHHhhCC--C-------------CCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcE
Confidence            999985 46666554322  2             999999999998532            34556788889988885 8


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      +++|||++|.|
T Consensus       152 ~~~~Sa~~~~~  162 (175)
T cd01870         152 YMECSAKTKEG  162 (175)
T ss_pred             EEEeccccCcC
Confidence            99999999986

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd01862 Rab7 Rab7 subfamily

Probab=99.97  E-value=1.2e-30  Score=174.64  Aligned_cols=147  Identities=31%  Similarity=0.463  Sum_probs=126.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||++++.++.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++|++||++++
T Consensus         6 iG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   85 (172)
T cd01862           6 LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNP   85 (172)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCH
Confidence            69999999999999999988877778877544 66778888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK-AGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|...++.......          ...+|+++|+||+|+..++.+..++...+++..+ .+++++||++|+|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~----------~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  154 (172)
T cd01862          86 KSFESLDSWRDEFLIQASPSD----------PENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAIN  154 (172)
T ss_pred             HHHHHHHHHHHHHHHhcCccC----------CCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCC
Confidence            999999889888776654210          1129999999999997666777788888988888 7999999999986

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=8.1e-32  Score=179.53  Aligned_cols=136  Identities=20%  Similarity=0.283  Sum_probs=114.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|+++.+...+.||++..+   ..++...+.+++||++|++++..++..+++++|++|+|||++++.
T Consensus         5 vG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~   81 (164)
T cd04162           5 LGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE   81 (164)
T ss_pred             ECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence            69999999999999999988888889987433   334556788999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecH----HHHHHHHHHhCCcEEEecccc
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISY----DEGKRLAESWKAGFVEASAKQ  154 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~e~Sa~~  154 (157)
                      ++..++.|+..+.....  .             +|+++|+||.|+...+.+..    .++..+++..++.+++|||++
T Consensus        82 s~~~~~~~l~~~~~~~~--~-------------~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~  144 (164)
T cd04162          82 RLPLARQELHQLLQHPP--D-------------LPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDD  144 (164)
T ss_pred             HHHHHHHHHHHHHhCCC--C-------------CcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecC
Confidence            99999999888864432  2             99999999999976654432    235666777788999999998

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=1e-30  Score=176.48  Aligned_cols=144  Identities=66%  Similarity=1.082  Sum_probs=128.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||++++.++.+...+.+|+...+...+.+++..+.+++||++|++++..++..++..+++++++||+++..
T Consensus         7 ~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~   86 (180)
T cd04137           7 LGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRK   86 (180)
T ss_pred             ECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHH
Confidence            69999999999999999998888888888777777788888889999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..+.+......             .|+++++||+|+...+.+...+...+++.++++++++||++|+|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~-------------~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  150 (180)
T cd04137          87 SFEVVKVIYDKILDMLGKES-------------VPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENEN  150 (180)
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            99999999999888654333             89999999999977677777778888888899999999999976

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=2.2e-30  Score=176.05  Aligned_cols=142  Identities=31%  Similarity=0.500  Sum_probs=122.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|..+.+...+.+|+...+...+.+++..+.+.+||++|++.+..+.+.+++++++++++||+++++
T Consensus         7 vG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~   86 (187)
T cd04129           7 VGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPD   86 (187)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHH
Confidence            69999999999999998888877888887777777788888889999999999999888888899999999999999999


Q ss_pred             hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC----------CceecHHHHHHHHHHhCC-cEE
Q psy1873          81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM----------ERMISYDEGKRLAESWKA-GFV  148 (157)
Q Consensus        81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~  148 (157)
                      +|+.+. .|+..+.....               ++|+++||||+|+.+          .+.+..+++..+++.++. +||
T Consensus        87 s~~~~~~~~~~~i~~~~~---------------~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (187)
T cd04129          87 SLENVRTKWIEEVRRYCP---------------NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYM  151 (187)
T ss_pred             HHHHHHHHHHHHHHHhCC---------------CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEE
Confidence            999996 57777765432               299999999999853          345667889999999995 899


Q ss_pred             EeccccCCC
Q psy1873         149 EASAKQDDY  157 (157)
Q Consensus       149 e~Sa~~~~~  157 (157)
                      ||||++|+|
T Consensus       152 e~Sa~~~~~  160 (187)
T cd04129         152 ECSALTGEG  160 (187)
T ss_pred             EccCCCCCC
Confidence            999999986

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd00876 Ras Ras family

Probab=99.97  E-value=2.1e-30  Score=171.37  Aligned_cols=144  Identities=45%  Similarity=0.763  Sum_probs=130.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||++++++..+...+.++.+..+...+..++..+.+++||++|+..+..++..+++.++++++|||+++++
T Consensus         5 ~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~   84 (160)
T cd00876           5 LGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRE   84 (160)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHH
Confidence            69999999999999999888888888888767777788888889999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..+........             .|+++++||+|+...+.+..+++..++..++++++++||++|+|
T Consensus        85 s~~~~~~~~~~~~~~~~~~~-------------~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  148 (160)
T cd00876          85 SFEEIKGYREQILRVKDDED-------------IPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNIN  148 (160)
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCC
Confidence            99999999999887765333             99999999999987778888899999999899999999999976

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=4.1e-30  Score=176.12  Aligned_cols=144  Identities=31%  Similarity=0.519  Sum_probs=123.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+.+.+...+.+|+...+...+.+++..+.+++||++|+..+..++..+++++|++|+|||++++.
T Consensus         5 vG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~   84 (198)
T cd04147           5 MGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPE   84 (198)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHH
Confidence            69999999999999999999888888887666667788888889999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC-CceecHHHHHHHHH-HhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM-ERMISYDEGKRLAE-SWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..+........             +|++||+||.|+.. .+.+...+...... ..+++++++||++|.|
T Consensus        85 s~~~~~~~~~~i~~~~~~~~-------------~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~g  150 (198)
T cd04147          85 SFEEVERLREEILEVKEDKF-------------VPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNEN  150 (198)
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCC
Confidence            99999999998887765433             99999999999865 45666555554443 4568999999999986

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04114 Rab30 Rab30 subfamily

Probab=99.97  E-value=7.3e-30  Score=170.53  Aligned_cols=143  Identities=29%  Similarity=0.465  Sum_probs=124.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||++++..+.+...+.+|++..+ ...+.+++..+.+.+||++|++.+...+..+++.+|++++|||++++
T Consensus        13 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   92 (169)
T cd04114          13 IGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCE   92 (169)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCH
Confidence            69999999999999998888777777777433 66778888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              +|+++|+||+|+.+.+.+.....+.+.+....+++++||++|+|
T Consensus        93 ~s~~~~~~~~~~l~~~~~~~--------------~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g  156 (169)
T cd04114          93 ESFRCLPEWLREIEQYANNK--------------VITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDN  156 (169)
T ss_pred             HHHHHHHHHHHHHHHhCCCC--------------CeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence            99999999988776554322              99999999999987777777778888888788999999999986

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=8.8e-30  Score=170.31  Aligned_cols=142  Identities=32%  Similarity=0.525  Sum_probs=122.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.++....+...+..++..+.+++||++|++.+..++..+++.+|++++|||++++.
T Consensus         6 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~   85 (171)
T cd00157           6 VGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPS   85 (171)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHH
Confidence            69999999999999999999878888887777777788888999999999999999989999999999999999999999


Q ss_pred             hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc-----------eecHHHHHHHHHHhCC-cE
Q psy1873          81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER-----------MISYDEGKRLAESWKA-GF  147 (157)
Q Consensus        81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~  147 (157)
                      ++..+. .|+..+.....  .             .|+++|+||+|+....           .+...++..++..+++ +|
T Consensus        86 s~~~~~~~~~~~~~~~~~--~-------------~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  150 (171)
T cd00157          86 SFENVKTKWIPEIRHYCP--N-------------VPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGY  150 (171)
T ss_pred             HHHHHHHHHHHHHHhhCC--C-------------CCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEE
Confidence            998875 45555554433  2             9999999999986543           3467788889999998 99


Q ss_pred             EEeccccCCC
Q psy1873         148 VEASAKQDDY  157 (157)
Q Consensus       148 ~e~Sa~~~~~  157 (157)
                      +++||++|+|
T Consensus       151 ~~~Sa~~~~g  160 (171)
T cd00157         151 MECSALTQEG  160 (171)
T ss_pred             EEeecCCCCC
Confidence            9999999986

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=1.2e-30  Score=174.51  Aligned_cols=138  Identities=17%  Similarity=0.210  Sum_probs=110.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|..+.+. .+.||++..+. .+..  ..+.+++||++|+++++.+++.+++++|++|+|||++++.
T Consensus        15 ~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~   90 (168)
T cd04149          15 LGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRD   90 (168)
T ss_pred             ECcCCCCHHHHHHHHccCCCc-cccCCcccceE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchh
Confidence            699999999999999987775 35678775443 2233  4578999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----hCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES-----WKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~e~Sa~~~  155 (157)
                      +++++..|+.+++.......             +|++||+||+|+.+  .+..+++..++..     ..+.++++||++|
T Consensus        91 s~~~~~~~~~~~~~~~~~~~-------------~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g  155 (168)
T cd04149          91 RIDEARQELHRIINDREMRD-------------ALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSG  155 (168)
T ss_pred             hHHHHHHHHHHHhcCHhhcC-------------CcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCC
Confidence            99999999888876432222             89999999999854  3455666665422     2247899999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       156 ~g  157 (168)
T cd04149         156 DG  157 (168)
T ss_pred             CC
Confidence            87

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd00154 Rab Rab family

Probab=99.97  E-value=1.4e-29  Score=166.73  Aligned_cols=143  Identities=37%  Similarity=0.597  Sum_probs=127.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|+++||||||++++.++.+...+.+|.+..+ ...+..++....+.+||++|+..+..++..+++++|++++|+|++++
T Consensus         6 ~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~   85 (159)
T cd00154           6 IGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNR   85 (159)
T ss_pred             ECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCH
Confidence            69999999999999999998887778887555 66777778888999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++++.+..|+..+.......              .|++|++||+|+........++...++..++.+++++||+++.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~--------------~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  149 (159)
T cd00154          86 ESFENLDKWLKELKEYAPEN--------------IPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGEN  149 (159)
T ss_pred             HHHHHHHHHHHHHHHhCCCC--------------CcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCC
Confidence            99999999999888776432              99999999999975667778889999999899999999999875

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=1.5e-30  Score=172.62  Aligned_cols=138  Identities=19%  Similarity=0.257  Sum_probs=107.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|.+|||||||++++..+.+. .+.||++..+. .+..  ..+.+.+||++|++++..++..+++++|++|+|||++++.
T Consensus         6 ~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~   81 (159)
T cd04150           6 VGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE   81 (159)
T ss_pred             ECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH
Confidence            699999999999999888886 46788875442 2333  4578899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHH-HHHHH----HHhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDE-GKRLA----ESWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~-~~~~~----~~~~~~~~e~Sa~~~  155 (157)
                      +++.+..|+..++.......             .|++|++||+|+.+..  ...+ ...++    ...++.++++||++|
T Consensus        82 s~~~~~~~~~~~~~~~~~~~-------------~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g  146 (159)
T cd04150          82 RIGEAREELQRMLNEDELRD-------------AVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSG  146 (159)
T ss_pred             HHHHHHHHHHHHHhcHHhcC-------------CCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCC
Confidence            99999998888875433222             8999999999995432  2223 22222    122346789999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       147 ~g  148 (159)
T cd04150         147 DG  148 (159)
T ss_pred             CC
Confidence            87

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=9.3e-30  Score=170.33  Aligned_cols=138  Identities=17%  Similarity=0.232  Sum_probs=112.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|+++||||||+++|.+..+.. +.+|++..+. .+..  ..+.+++||++|++++..++..+++++|++++|||+++++
T Consensus         5 vG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~   80 (169)
T cd04158           5 LGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD   80 (169)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence            6999999999999999987754 6788775442 2333  4578899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC------CcEEEecccc
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK------AGFVEASAKQ  154 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~e~Sa~~  154 (157)
                      +++++..|+..++.......             .|++|++||+|+.+  .++.++.+.++...+      +.+++|||++
T Consensus        81 s~~~~~~~~~~~~~~~~~~~-------------~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  145 (169)
T cd04158          81 RVSEAHSELAKLLTEKELRD-------------ALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARS  145 (169)
T ss_pred             HHHHHHHHHHHHhcChhhCC-------------CCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCC
Confidence            99999999999886543222             89999999999854  466677777664332      3688999999


Q ss_pred             CCC
Q psy1873         155 DDY  157 (157)
Q Consensus       155 ~~~  157 (157)
                      |.|
T Consensus       146 g~g  148 (169)
T cd04158         146 GMG  148 (169)
T ss_pred             CCC
Confidence            986

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.4e-29  Score=171.18  Aligned_cols=135  Identities=17%  Similarity=0.253  Sum_probs=106.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|+++||||||++++..+.+. .+.||++..+. .+..  ..+.+++||++|++++..+|..+++++|++|+|||+++++
T Consensus        23 vG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~   98 (181)
T PLN00223         23 VGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD   98 (181)
T ss_pred             ECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHH
Confidence            699999999999999988776 46788875442 2333  4578999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC--------cEEEecc
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA--------GFVEASA  152 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~e~Sa  152 (157)
                      +++++..++..++......             .+|++|+|||+|+.+.  +..++   +.+.+++        .+++|||
T Consensus        99 s~~~~~~~l~~~l~~~~~~-------------~~piilv~NK~Dl~~~--~~~~~---~~~~l~l~~~~~~~~~~~~~Sa  160 (181)
T PLN00223         99 RVVEARDELHRMLNEDELR-------------DAVLLVFANKQDLPNA--MNAAE---ITDKLGLHSLRQRHWYIQSTCA  160 (181)
T ss_pred             HHHHHHHHHHHHhcCHhhC-------------CCCEEEEEECCCCCCC--CCHHH---HHHHhCccccCCCceEEEeccC
Confidence            9999988888776543222             2999999999998653  23333   3333343        3668999


Q ss_pred             ccCCC
Q psy1873         153 KQDDY  157 (157)
Q Consensus       153 ~~~~~  157 (157)
                      ++|+|
T Consensus       161 ~~g~g  165 (181)
T PLN00223        161 TSGEG  165 (181)
T ss_pred             CCCCC
Confidence            99987

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=5.7e-30  Score=172.30  Aligned_cols=138  Identities=18%  Similarity=0.213  Sum_probs=106.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|..+.+. .+.||++..+. .+..  ..+.+++||++|++++..++..++++++++|+|||+++++
T Consensus        19 ~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~   94 (175)
T smart00177       19 VGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRD   94 (175)
T ss_pred             EcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHH
Confidence            699999999999999887775 46788875442 2333  3478999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE-----SWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~  155 (157)
                      +++.+..|+..++.......             +|++|||||+|+.+..  +..+......     ...+.++++||++|
T Consensus        95 s~~~~~~~l~~~~~~~~~~~-------------~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g  159 (175)
T smart00177       95 RIDEAREELHRMLNEDELRD-------------AVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSG  159 (175)
T ss_pred             HHHHHHHHHHHHhhCHhhcC-------------CcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCC
Confidence            99999999988875432222             8999999999986432  2233222221     11235778999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       160 ~g  161 (175)
T smart00177      160 DG  161 (175)
T ss_pred             CC
Confidence            87

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PLN00023 GTP-binding protein; Provisional

Probab=99.96  E-value=6e-29  Score=178.38  Aligned_cols=143  Identities=22%  Similarity=0.268  Sum_probs=114.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEEC-------------CeEEEEEEEeCCCCccCcCchhhhccC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMN-------------NQDYDLKLVDTAGQDEYSIFPAQYSMD   66 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~D~~g~~~~~~~~~~~~~~   66 (157)
                      ||+.|||||||+++|+++.+...+.+|++..+ .+.+.++             ++.+.++|||++|+++|..++..++++
T Consensus        27 LGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~  106 (334)
T PLN00023         27 VGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQ  106 (334)
T ss_pred             ECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccC
Confidence            69999999999999999999888999999665 4556654             356889999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc---e---ecHHHHHHHH
Q psy1873          67 IHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER---M---ISYDEGKRLA  140 (157)
Q Consensus        67 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~---~---~~~~~~~~~~  140 (157)
                      ++++|+|||++++++|+++..|+..+.............  ......+|++|||||+||...+   .   +..++++.+|
T Consensus       107 AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~--~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A  184 (334)
T PLN00023        107 INGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSG--GPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWV  184 (334)
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccc--cccCCCCcEEEEEECccccccccccccccccHHHHHHHH
Confidence            999999999999999999999999997764210000000  0001128999999999996542   2   3688999999


Q ss_pred             HHhCC
Q psy1873         141 ESWKA  145 (157)
Q Consensus       141 ~~~~~  145 (157)
                      +.+|+
T Consensus       185 ~~~g~  189 (334)
T PLN00023        185 EKQGL  189 (334)
T ss_pred             HHcCC
Confidence            99985

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=1.2e-28  Score=164.41  Aligned_cols=141  Identities=24%  Similarity=0.269  Sum_probs=107.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|.++.+...+.++ ...+.....+++..+.+.+||++|++.+...+..+++.+|++++|||++++.
T Consensus         6 vG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~   84 (166)
T cd01893           6 IGDEGVGKSSLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPS   84 (166)
T ss_pred             ECCCCCCHHHHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHH
Confidence            699999999999999999987665443 3334444566778889999999999988888788889999999999999999


Q ss_pred             hHHHHHH-HHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHHHh-CC-cEEEeccccC
Q psy1873          81 SFEVVQI-LYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI--SYDEGKRLAESW-KA-GFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~--~~~~~~~~~~~~-~~-~~~e~Sa~~~  155 (157)
                      +++.+.. |+..+.... . .             .|+++|+||+|+.+....  ..++...++..+ ++ ++++|||++|
T Consensus        85 s~~~~~~~~~~~i~~~~-~-~-------------~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  149 (166)
T cd01893          85 TLERIRTKWLPLIRRLG-V-K-------------VPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTL  149 (166)
T ss_pred             HHHHHHHHHHHHHHHhC-C-C-------------CCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccc
Confidence            9999864 555554433 2 2             999999999999664432  123333444443 33 8999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      .|
T Consensus       150 ~~  151 (166)
T cd01893         150 IN  151 (166)
T ss_pred             cC
Confidence            86

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=7.7e-29  Score=166.43  Aligned_cols=138  Identities=20%  Similarity=0.270  Sum_probs=109.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|.+..+ ..+.+|++.. ...+.++  .+.+.+||++|++.+..++..+++++|++++|||++++.
T Consensus        20 vG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~   95 (173)
T cd04154          20 LGLDNAGKTTILKKLLGEDI-DTISPTLGFQ-IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRL   95 (173)
T ss_pred             ECCCCCCHHHHHHHHccCCC-CCcCCccccc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHH
Confidence            69999999999999997754 4566777632 3344555  477899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE-----SWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~  155 (157)
                      +++.+..|+..++.......             +|++||+||+|+.+..  ..++...+++     ..+++++++||++|
T Consensus        96 s~~~~~~~~~~~~~~~~~~~-------------~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  160 (173)
T cd04154          96 RLDDCKRELKELLQEERLAG-------------ATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTG  160 (173)
T ss_pred             HHHHHHHHHHHHHhChhhcC-------------CCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCC
Confidence            99999889888875432222             9999999999986532  4455555543     34578999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       161 ~g  162 (173)
T cd04154         161 EG  162 (173)
T ss_pred             cC
Confidence            86

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PTZ00099 rab6; Provisional

Probab=99.96  E-value=2.7e-28  Score=164.05  Aligned_cols=126  Identities=36%  Similarity=0.518  Sum_probs=113.0

Q ss_pred             ccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHh
Q psy1873          18 GQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMT   96 (157)
Q Consensus        18 ~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~   96 (157)
                      +.|.+.+.+|++..+ .+.+.+++..+.+.|||++|++++..++..+++++|++|+|||++++++|+.+..|+..++...
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            457778899999666 6778889999999999999999999999999999999999999999999999999999987654


Q ss_pred             ccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          97 GKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .. .             +|++|||||+|+...+.+..+++..++..+++.|+||||++|+|
T Consensus        83 ~~-~-------------~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~n  129 (176)
T PTZ00099         83 GK-D-------------VIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHN  129 (176)
T ss_pred             CC-C-------------CeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence            32 2             89999999999977778889999999999999999999999986

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=2.1e-29  Score=170.54  Aligned_cols=138  Identities=17%  Similarity=0.223  Sum_probs=105.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||++++..+.+.. +.||++..+. .+..  ..+.+++||++|++++..++..+++++|++|+|||+++++
T Consensus        23 vG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~   98 (182)
T PTZ00133         23 VGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRE   98 (182)
T ss_pred             EcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH
Confidence            6999999999999998887764 6678775443 3333  4578999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA-----ESWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~  155 (157)
                      +++.+..++.+++......             .+|++|++||.|+.+.  +..++.....     +...+.++++||++|
T Consensus        99 s~~~~~~~l~~~~~~~~~~-------------~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg  163 (182)
T PTZ00133         99 RIGDAREELERMLSEDELR-------------DAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTA  163 (182)
T ss_pred             HHHHHHHHHHHHHhCHhhc-------------CCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCC
Confidence            9999988888876543222             2899999999998542  2223322211     111235779999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       164 ~g  165 (182)
T PTZ00133        164 QG  165 (182)
T ss_pred             CC
Confidence            87

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.96  E-value=3.1e-28  Score=164.91  Aligned_cols=141  Identities=21%  Similarity=0.259  Sum_probs=111.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEE-CCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRM-NNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   78 (157)
                      +|++|||||||+++++.+.+... .+|.+... ...+.+ ++..+.+.+||++|++++..++..+++++|++|+|||+++
T Consensus         9 vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~   87 (183)
T cd04152           9 LGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVD   87 (183)
T ss_pred             ECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCC
Confidence            69999999999999998888654 57776333 333433 4467889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH------hCCcEEEecc
Q psy1873          79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES------WKAGFVEASA  152 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~e~Sa  152 (157)
                      +++++.+..|+..+........             .|++||+||+|+..  .+..++...+...      .+++++++||
T Consensus        88 ~~~~~~~~~~~~~i~~~~~~~~-------------~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  152 (183)
T cd04152          88 VERMEEAKTELHKITRFSENQG-------------VPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACA  152 (183)
T ss_pred             HHHHHHHHHHHHHHHhhhhcCC-------------CcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeec
Confidence            9999999989888876544333             99999999999854  3344545544421      1246899999


Q ss_pred             ccCCC
Q psy1873         153 KQDDY  157 (157)
Q Consensus       153 ~~~~~  157 (157)
                      ++|+|
T Consensus       153 ~~~~g  157 (183)
T cd04152         153 IIGEG  157 (183)
T ss_pred             ccCCC
Confidence            99987

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=5.2e-29  Score=166.45  Aligned_cols=138  Identities=21%  Similarity=0.312  Sum_probs=107.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|.+. +...+.+|++.. ...+..  ..+.+++||++|+..++.++..++++++++|+|||++++.
T Consensus         5 ~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~   80 (167)
T cd04161           5 VGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD   80 (167)
T ss_pred             ECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence            699999999999999976 767778888854 233444  3477899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec----HHHHHHHHHHhC--CcEEEecccc
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS----YDEGKRLAESWK--AGFVEASAKQ  154 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~----~~~~~~~~~~~~--~~~~e~Sa~~  154 (157)
                      +++.+..|+..++.......             +|++||+||+|+...+...    ......+++..+  +.+++|||++
T Consensus        81 s~~~~~~~l~~l~~~~~~~~-------------~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~  147 (167)
T cd04161          81 RVQEVKEILRELLQHPRVSG-------------KPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIE  147 (167)
T ss_pred             HHHHHHHHHHHHHcCccccC-------------CcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEcee
Confidence            99999999998876533222             9999999999996644211    111233343333  5788899999


Q ss_pred             C
Q psy1873         155 D  155 (157)
Q Consensus       155 ~  155 (157)
                      |
T Consensus       148 g  148 (167)
T cd04161         148 G  148 (167)
T ss_pred             C
Confidence            8

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=1.2e-27  Score=165.91  Aligned_cols=140  Identities=23%  Similarity=0.347  Sum_probs=119.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++++.+.+...+.+|++..+ ...+..++..+.+.+||++|++++..++..++..++++++|||+++.
T Consensus        15 iG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~   94 (215)
T PTZ00132         15 VGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSR   94 (215)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCH
Confidence            69999999999999999888888899998655 55566788889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+|..+..|+..+.....  .             .|++++|||+|+.+ +.+..+ ...+++..++.++++||++|.|
T Consensus        95 ~s~~~~~~~~~~i~~~~~--~-------------~~i~lv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~  155 (215)
T PTZ00132         95 ITYKNVPNWHRDIVRVCE--N-------------IPIVLVGNKVDVKD-RQVKAR-QITFHRKKNLQYYDISAKSNYN  155 (215)
T ss_pred             HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEECccCcc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCC
Confidence            999999999988876542  2             89999999999854 334333 3467778889999999999875

>cd04157 Arl6 Arl6 subfamily

Probab=99.95  E-value=2.6e-28  Score=161.87  Aligned_cols=141  Identities=19%  Similarity=0.211  Sum_probs=105.8

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|.+..+ ...+.+|++.... ...  ...+.+++||++|++++..++..+++++|++|+|+|++++
T Consensus         5 vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~   81 (162)
T cd04157           5 VGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDR   81 (162)
T ss_pred             ECCCCCCHHHHHHHHcccCCCcceecCccccceE-EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcH
Confidence            69999999999999998763 5667788874321 222  3457889999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH---H--HhCCcEEEecccc
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA---E--SWKAGFVEASAKQ  154 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~---~--~~~~~~~e~Sa~~  154 (157)
                      .++..+..|+..++......           ...+|+++|+||+|+.+...  ..+.....   .  ...++++++||++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~-----------~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~  148 (162)
T cd04157          82 LRLVVVKDELELLLNHPDIK-----------HRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALT  148 (162)
T ss_pred             HHHHHHHHHHHHHHcCcccc-----------cCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCC
Confidence            99999988888876542110           11299999999999865322  22222211   1  1124689999999


Q ss_pred             CCC
Q psy1873         155 DDY  157 (157)
Q Consensus       155 ~~~  157 (157)
                      |+|
T Consensus       149 g~g  151 (162)
T cd04157         149 GEG  151 (162)
T ss_pred             CCc
Confidence            986

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=6.2e-28  Score=159.87  Aligned_cols=139  Identities=22%  Similarity=0.274  Sum_probs=107.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|.++.+.. ..+|++..+ ..+.. +..+.+.+||++|+..+..++..+++++|++++|+|.+++.
T Consensus         5 ~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~-~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~   81 (160)
T cd04156           5 LGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV-EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEA   81 (160)
T ss_pred             EcCCCCCHHHHHHHHhcCCccc-ccCccCcce-EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHH
Confidence            6999999999999999988764 357776433 22333 34578999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHH------HHHHHhCCcEEEecccc
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGK------RLAESWKAGFVEASAKQ  154 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~------~~~~~~~~~~~e~Sa~~  154 (157)
                      ++..+..|+..++.......             .|+++++||+|+...  ...++..      .++...++++++|||++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~-------------~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~  146 (160)
T cd04156          82 RLDESQKELKHILKNEHIKG-------------VPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVT  146 (160)
T ss_pred             HHHHHHHHHHHHHhchhhcC-------------CCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEeccccc
Confidence            99999999888876543222             999999999998542  2223322      22233346799999999


Q ss_pred             CCC
Q psy1873         155 DDY  157 (157)
Q Consensus       155 ~~~  157 (157)
                      |+|
T Consensus       147 ~~g  149 (160)
T cd04156         147 GEG  149 (160)
T ss_pred             CCC
Confidence            987

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.95  E-value=3.1e-28  Score=163.71  Aligned_cols=138  Identities=19%  Similarity=0.264  Sum_probs=107.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++++.+.+.. +.+|++..+ ..+.++  .+.+.+||++|++++...+..+++++|++++|+|+++++
T Consensus        21 ~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~   96 (174)
T cd04153          21 VGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV-EEIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRE   96 (174)
T ss_pred             ECCCCCCHHHHHHHHccCCCCC-cCCccccce-EEEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHH
Confidence            6999999999999999888875 467777544 233344  477899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHH-HHHHH----HHhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDE-GKRLA----ESWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~-~~~~~----~~~~~~~~e~Sa~~~  155 (157)
                      ++..+..++..++.......             +|++|++||+|+...  ++.++ ...+.    +..+++++++||++|
T Consensus        97 ~~~~~~~~l~~~~~~~~~~~-------------~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g  161 (174)
T cd04153          97 RLPLTKEELYKMLAHEDLRK-------------AVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTG  161 (174)
T ss_pred             HHHHHHHHHHHHHhchhhcC-------------CCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCC
Confidence            99999888888876543222             999999999998542  23333 22222    234567999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       162 ~g  163 (174)
T cd04153         162 EG  163 (174)
T ss_pred             CC
Confidence            86

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=7.4e-28  Score=159.38  Aligned_cols=138  Identities=17%  Similarity=0.214  Sum_probs=103.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|+++||||||++++..+.+.. +.+|++..+. .+..  ....+++||++|+.++..++..+++.++++|+|+|++++.
T Consensus         5 vG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~   80 (158)
T cd04151           5 LGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE-TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD   80 (158)
T ss_pred             ECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence            6999999999999998877753 4577764432 2333  4578899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHH-HHH----HHhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGK-RLA----ESWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~e~Sa~~~  155 (157)
                      ++.....++..++.......             .|+++++||+|+.+..  ...+.. .+.    ...+.+++++||++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~-------------~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~  145 (158)
T cd04151          81 RLGTAKEELHAMLEEEELKG-------------AVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKG  145 (158)
T ss_pred             HHHHHHHHHHHHHhchhhcC-------------CcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCC
Confidence            99888777776654432222             9999999999986432  222221 121    112357999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       146 ~g  147 (158)
T cd04151         146 EG  147 (158)
T ss_pred             CC
Confidence            86

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=2.7e-27  Score=156.57  Aligned_cols=138  Identities=22%  Similarity=0.257  Sum_probs=107.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|.+|||||||++++++..+ ..+.+|.+..+ ..+.+.  .+.+.+||++|+..+..++..++++++++++|||+++++
T Consensus         5 iG~~~~GKssli~~~~~~~~-~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~   80 (158)
T cd00878           5 LGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE   80 (158)
T ss_pred             EcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence            69999999999999998874 34566666433 223443  467899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE-----SWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~  155 (157)
                      ++..+..|+..+........             .|+++++||+|+....  ..++......     ...++++++||++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~-------------~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  145 (158)
T cd00878          81 RIEEAKEELHKLLNEEELKG-------------VPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTG  145 (158)
T ss_pred             HHHHHHHHHHHHHhCcccCC-------------CcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCC
Confidence            99999999988877554333             9999999999986533  2233333322     23468999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      .|
T Consensus       146 ~g  147 (158)
T cd00878         146 DG  147 (158)
T ss_pred             CC
Confidence            86

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=9.4e-27  Score=158.41  Aligned_cols=138  Identities=21%  Similarity=0.289  Sum_probs=110.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||++++.++.+. .+.+|.+.. ...+.+++  ..+.+||++|+..+..++..++++++++++|+|+++++
T Consensus        25 lG~~~~GKStLi~~l~~~~~~-~~~~T~~~~-~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~  100 (190)
T cd00879          25 LGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT-SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPE  100 (190)
T ss_pred             ECCCCCCHHHHHHHHhcCCCc-ccCCccCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHH
Confidence            699999999999999987764 566776643 23445554  67899999999999889999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH----------------hC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES----------------WK  144 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~  144 (157)
                      +++....|+..+........             .|++|++||+|+..  .+..++.+.++..                ..
T Consensus       101 s~~~~~~~~~~i~~~~~~~~-------------~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (190)
T cd00879         101 RFQESKEELDSLLSDEELAN-------------VPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRP  165 (190)
T ss_pred             HHHHHHHHHHHHHcCccccC-------------CCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCcee
Confidence            99998888888876443323             99999999999853  5556666666643                12


Q ss_pred             CcEEEeccccCCC
Q psy1873         145 AGFVEASAKQDDY  157 (157)
Q Consensus       145 ~~~~e~Sa~~~~~  157 (157)
                      +.+++|||++|+|
T Consensus       166 ~~~~~~Sa~~~~g  178 (190)
T cd00879         166 IEVFMCSVVKRQG  178 (190)
T ss_pred             EEEEEeEecCCCC
Confidence            4699999999986

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=1.5e-26  Score=154.19  Aligned_cols=139  Identities=22%  Similarity=0.283  Sum_probs=106.5

Q ss_pred             CCCCCCChhhhHhhhhcccc------cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF------VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVY   74 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   74 (157)
                      +|++|||||||++++.....      ...+.+|++..+ ..+.++  ...+.+||++|++.+..++..++..++++++|+
T Consensus         5 vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vv   81 (167)
T cd04160           5 LGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAIIYVI   81 (167)
T ss_pred             EecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence            69999999999999976422      234456665443 234444  467899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-------hCCcE
Q psy1873          75 SITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES-------WKAGF  147 (157)
Q Consensus        75 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~  147 (157)
                      |.++++++..+..|+..+........             +|+++++||+|+...  ....+...+...       .++++
T Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~~~~-------------~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  146 (167)
T cd04160          82 DSTDRERFEESKSALEKVLRNEALEG-------------VPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLV  146 (167)
T ss_pred             ECchHHHHHHHHHHHHHHHhChhhcC-------------CCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEE
Confidence            99999999999999888876543333             999999999998543  333444444322       24689


Q ss_pred             EEeccccCCC
Q psy1873         148 VEASAKQDDY  157 (157)
Q Consensus       148 ~e~Sa~~~~~  157 (157)
                      +++||++|+|
T Consensus       147 ~~~Sa~~g~g  156 (167)
T cd04160         147 LPVSALEGTG  156 (167)
T ss_pred             EEeeCCCCcC
Confidence            9999999986

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=1.9e-26  Score=151.89  Aligned_cols=139  Identities=22%  Similarity=0.321  Sum_probs=109.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||++++.+..+...+.+|++..+. .+..++  +.+.+||++|+..+..++..+++.+|++++|+|++++.
T Consensus         5 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~   81 (159)
T cd04159           5 VGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR-KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT   81 (159)
T ss_pred             EcCCCCCHHHHHHHHccCCCCcCccCCCCcceE-EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence            699999999999999999998888888885543 233333  77999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA-----ESWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~  155 (157)
                      ++..+..|+..+........             +|+++++||+|+.+....  .+.....     ....++++++||++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~-------------~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~  146 (159)
T cd04159          82 ALEAAKNELHDLLEKPSLEG-------------IPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEK  146 (159)
T ss_pred             HHHHHHHHHHHHHcChhhcC-------------CCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccC
Confidence            99998888888776432222             899999999998654322  2222111     122368999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      .|
T Consensus       147 ~g  148 (159)
T cd04159         147 TN  148 (159)
T ss_pred             CC
Confidence            86

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG4252|consensus

Probab=99.94  E-value=1.5e-28  Score=159.95  Aligned_cols=142  Identities=32%  Similarity=0.437  Sum_probs=133.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|+.+|||||+++|+|.+-|...|..|++..+ ...+.+++..+++.+||++||++|..+.+.|++++.+.+|||+-+|+
T Consensus        26 vGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr  105 (246)
T KOG4252|consen   26 VGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDR  105 (246)
T ss_pred             ECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccH
Confidence            69999999999999999999999999999666 77788888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .||+.+..|..++......               +|.++|-||+|+.+..++...+++.+++.+++.++.+|+++.-|
T Consensus       106 ~SFea~~~w~~kv~~e~~~---------------IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~N  168 (246)
T KOG4252|consen  106 YSFEATLEWYNKVQKETER---------------IPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFN  168 (246)
T ss_pred             HHHHHHHHHHHHHHHHhcc---------------CCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhh
Confidence            9999999999999888765               99999999999999999999999999999999999999998754

>KOG0073|consensus

Probab=99.94  E-value=1.3e-25  Score=144.08  Aligned_cols=138  Identities=22%  Similarity=0.342  Sum_probs=111.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|..|+|||||+++|.+.. .+...||.+.. .+++.+  +.+.+.+||.+||...+..|+.||..+|++|+|+|.+|+.
T Consensus        22 LGLdNsGKTti~~kl~~~~-~~~i~pt~gf~-Iktl~~--~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~   97 (185)
T KOG0073|consen   22 LGLDNSGKTTIVKKLLGED-TDTISPTLGFQ-IKTLEY--KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRM   97 (185)
T ss_pred             EecCCCCchhHHHHhcCCC-ccccCCcccee-eEEEEe--cceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHH
Confidence            5999999999999998765 44556776633 333344  4588999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHH------HHHHHHHhCCcEEEecccc
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDE------GKRLAESWKAGFVEASAKQ  154 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~~e~Sa~~  154 (157)
                      ++++....+..++...+--+             .|++|++||+|+..  .+..++      ...++++..++.+-|||.+
T Consensus        98 r~~e~~~~L~~lL~eerlaG-------------~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~t  162 (185)
T KOG0073|consen   98 RMQECKQELTELLVEERLAG-------------APLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVT  162 (185)
T ss_pred             HHHHHHHHHHHHHhhhhhcC-------------CceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEeccc
Confidence            99999988888887554333             99999999999963  222222      3445577789999999999


Q ss_pred             CCC
Q psy1873         155 DDY  157 (157)
Q Consensus       155 ~~~  157 (157)
                      |++
T Consensus       163 ge~  165 (185)
T KOG0073|consen  163 GED  165 (185)
T ss_pred             ccc
Confidence            975

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.94  E-value=8.3e-26  Score=152.01  Aligned_cols=138  Identities=22%  Similarity=0.328  Sum_probs=109.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||++++..+.... ..||.+... ..+..++  +.+.+||.+|+..++.+|+.++++++++|+|+|.++++
T Consensus        20 lGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~-~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~   95 (175)
T PF00025_consen   20 LGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI-EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPE   95 (175)
T ss_dssp             EESTTSSHHHHHHHHHSSSEEE-EEEESSEEE-EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGG
T ss_pred             ECCCccchHHHHHHhhhccccc-cCccccccc-ceeeeCc--EEEEEEeccccccccccceeeccccceeEEEEecccce
Confidence            5999999999999998765543 667877433 3344544  67899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH------hCCcEEEecccc
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES------WKAGFVEASAKQ  154 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~e~Sa~~  154 (157)
                      .+.+....+..++.......             +|++|++||+|+.+  .++.++.......      ..+.++.|||++
T Consensus        96 ~l~e~~~~L~~ll~~~~~~~-------------~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~  160 (175)
T PF00025_consen   96 RLQEAKEELKELLNDPELKD-------------IPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKT  160 (175)
T ss_dssp             GHHHHHHHHHHHHTSGGGTT-------------SEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred             eecccccchhhhcchhhccc-------------ceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccC
Confidence            99999999888887654433             99999999999854  3444555543322      235699999999


Q ss_pred             CCC
Q psy1873         155 DDY  157 (157)
Q Consensus       155 ~~~  157 (157)
                      |+|
T Consensus       161 g~G  163 (175)
T PF00025_consen  161 GEG  163 (175)
T ss_dssp             TBT
T ss_pred             CcC
Confidence            987

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.93  E-value=1e-25  Score=152.77  Aligned_cols=138  Identities=20%  Similarity=0.225  Sum_probs=105.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||++++.++.+. .+.+|.+... ..+.+++  +.+.+||++|+..+..++..++.+++++++|+|+++++
T Consensus        23 vG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~   98 (184)
T smart00178       23 LGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS-EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKE   98 (184)
T ss_pred             ECCCCCCHHHHHHHHhcCCCc-ccCCccccce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHH
Confidence            699999999999999987764 3456655332 2334443  67899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH------------hCCcEE
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES------------WKAGFV  148 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~  148 (157)
                      +++....++..+++......             .|+++|+||+|+..  .++.++......-            ....++
T Consensus        99 ~~~~~~~~l~~l~~~~~~~~-------------~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~  163 (184)
T smart00178       99 RFAESKRELDALLSDEELAT-------------VPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVF  163 (184)
T ss_pred             HHHHHHHHHHHHHcChhhcC-------------CCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEE
Confidence            99999888888776433222             99999999999853  3445554433211            123599


Q ss_pred             EeccccCCC
Q psy1873         149 EASAKQDDY  157 (157)
Q Consensus       149 e~Sa~~~~~  157 (157)
                      +|||++|+|
T Consensus       164 ~~Sa~~~~g  172 (184)
T smart00178      164 MCSVVRRMG  172 (184)
T ss_pred             EeecccCCC
Confidence            999999986

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG0070|consensus

Probab=99.93  E-value=1.7e-25  Score=146.63  Aligned_cols=140  Identities=19%  Similarity=0.268  Sum_probs=111.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||-.++||||++++|..+++... .||+|... ..+.+.  .+.+.+||.+||++++.+|+.|+++.+++|+|.|.+|++
T Consensus        23 lGLD~AGKTTILykLk~~E~vtt-vPTiGfnV-E~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~   98 (181)
T KOG0070|consen   23 VGLDAAGKTTILYKLKLGEIVTT-VPTIGFNV-ETVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRE   98 (181)
T ss_pred             EeccCCCceeeeEeeccCCcccC-CCccccce-eEEEEc--ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHH
Confidence            68999999999999999888766 89999543 223443  588999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce---ecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM---ISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+.+++..+..++.......             .|+++.+||.|++....   ++......-.......+..|+|.+|+|
T Consensus        99 Ri~eak~eL~~~l~~~~l~~-------------~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G  165 (181)
T KOG0070|consen   99 RIEEAKEELHRMLAEPELRN-------------APLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEG  165 (181)
T ss_pred             HHHHHHHHHHHHHcCcccCC-------------ceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeecccccccc
Confidence            99999998888887776433             99999999999965433   222222222222345788999999986

>cd01890 LepA LepA subfamily

Probab=99.92  E-value=3.1e-24  Score=144.61  Aligned_cols=137  Identities=20%  Similarity=0.217  Sum_probs=98.8

Q ss_pred             CCCCCCChhhhHhhhhccc-------ccccccCCc------cceE-EEEE--EE---CCeEEEEEEEeCCCCccCcCchh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ-------FVDSYDPTI------ENTF-VKTT--RM---NNQDYDLKLVDTAGQDEYSIFPA   61 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~-------~~~~~~~t~------~~~~-~~~~--~~---~~~~~~~~i~D~~g~~~~~~~~~   61 (157)
                      ||+++||||||+++|++..       +...+.++.      +..+ ...+  .+   ++..+.+.+|||+|++++..++.
T Consensus         6 vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   85 (179)
T cd01890           6 IAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFSYEVS   85 (179)
T ss_pred             EeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhHHHHH
Confidence            6999999999999998732       222233322      2222 1222  22   66778899999999999999999


Q ss_pred             hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873          62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE  141 (157)
Q Consensus        62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~  141 (157)
                      .+++++|++|+|||+++..+++....|... ..    ..             +|+++|+||+|+.+.+  .......+++
T Consensus        86 ~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~-~~----~~-------------~~iiiv~NK~Dl~~~~--~~~~~~~~~~  145 (179)
T cd01890          86 RSLAACEGALLLVDATQGVEAQTLANFYLA-LE----NN-------------LEIIPVINKIDLPSAD--PERVKQQIED  145 (179)
T ss_pred             HHHHhcCeEEEEEECCCCccHhhHHHHHHH-HH----cC-------------CCEEEEEECCCCCcCC--HHHHHHHHHH
Confidence            999999999999999987776666555422 11    12             8999999999985432  2233456677


Q ss_pred             HhCCc---EEEeccccCCC
Q psy1873         142 SWKAG---FVEASAKQDDY  157 (157)
Q Consensus       142 ~~~~~---~~e~Sa~~~~~  157 (157)
                      .++++   ++++||++|+|
T Consensus       146 ~~~~~~~~~~~~Sa~~g~g  164 (179)
T cd01890         146 VLGLDPSEAILVSAKTGLG  164 (179)
T ss_pred             HhCCCcccEEEeeccCCCC
Confidence            77764   89999999986

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=1.8e-23  Score=136.01  Aligned_cols=144  Identities=34%  Similarity=0.532  Sum_probs=112.1

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|+|||||++++.+... .....+|....+............+.+||++|+..+...+..+++.++++++|+|++++
T Consensus         2 iG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~   81 (157)
T cd00882           2 VGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDR   81 (157)
T ss_pred             CCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCH
Confidence            79999999999999998877 45555665344466666667788999999999998888888899999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHH-HHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDE-GKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+...........             .|+++++||+|+.......... ...+....+++++++||+++.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~-------------~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  147 (157)
T cd00882          82 ESFENVKEWLLLILINKEGEN-------------IPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGEN  147 (157)
T ss_pred             HHHHHHHHHHHHHHHhhccCC-------------CcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCC
Confidence            999999887544443333333             9999999999986544433322 3445555568999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=4.8e-24  Score=148.03  Aligned_cols=143  Identities=33%  Similarity=0.426  Sum_probs=112.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|.+..+...+.+|++..+ ..........+.+.+||++|+++++.+++.++.+++++++|||.++.
T Consensus        11 ~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~   90 (219)
T COG1100          11 LGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLR   90 (219)
T ss_pred             EcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence            69999999999999999999999999988666 44444444478899999999999999999999999999999999995


Q ss_pred             hhH-HHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHh---
Q psy1873          80 KSF-EVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER------------MISYDEGKRLAESW---  143 (157)
Q Consensus        80 ~s~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~------------~~~~~~~~~~~~~~---  143 (157)
                      .++ +....|...+.......              .|+++++||+|+...+            ..........+...   
T Consensus        91 ~~~~~~~~~~~~~l~~~~~~~--------------~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (219)
T COG1100          91 ESSDELTEEWLEELRELAPDD--------------VPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVA  156 (219)
T ss_pred             hhhhHHHHHHHHHHHHhCCCC--------------ceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhc
Confidence            555 45577777776666422              9999999999997653            33344444444333   


Q ss_pred             CCcEEEeccc--cCCC
Q psy1873         144 KAGFVEASAK--QDDY  157 (157)
Q Consensus       144 ~~~~~e~Sa~--~~~~  157 (157)
                      ...++++||+  ++.|
T Consensus       157 ~~~~~~~s~~~~~~~~  172 (219)
T COG1100         157 NPALLETSAKSLTGPN  172 (219)
T ss_pred             ccceeEeecccCCCcC
Confidence            2359999999  6653

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.92  E-value=1.6e-23  Score=137.46  Aligned_cols=142  Identities=24%  Similarity=0.400  Sum_probs=112.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|.+|+|||||++++....+...+.++++..+ ...+..++..+.+.+||++|+..+..++..+++.++.++.++|+...
T Consensus         7 ~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~   86 (161)
T TIGR00231         7 VGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVIL   86 (161)
T ss_pred             ECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeee
Confidence            69999999999999999887777777777554 55567777778899999999999999999999999999999999887


Q ss_pred             -hhHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 -KSFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 -~s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                       .+++... .|...+...... .             .|+++++||+|+...+ +.......+......+++++||++|+|
T Consensus        87 v~~~~~~~~~~~~~~~~~~~~-~-------------~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~g  151 (161)
T TIGR00231        87 VLDVEEILEKQTKEIIHHAES-N-------------VPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKN  151 (161)
T ss_pred             ehhhhhHhHHHHHHHHHhccc-C-------------CcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCC
Confidence             7777665 666666555432 3             8999999999996544 333444444454557899999999986

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.91  E-value=1.1e-23  Score=140.57  Aligned_cols=138  Identities=19%  Similarity=0.197  Sum_probs=91.7

Q ss_pred             CCCCCCChhhhHhhhhccccccc-ccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc---------hhhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDS-YDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF---------PAQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---------~~~~~~~~~~~   70 (157)
                      +|++|||||||+++|.+..+... +..++..........  ..+.+.+|||+|+......         .......+|++
T Consensus         6 ~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~   83 (168)
T cd01897           6 AGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAV   83 (168)
T ss_pred             EcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcE
Confidence            69999999999999998876422 222222111222222  3467899999998432110         00111235889


Q ss_pred             EEEEECCChhhH--HHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEE
Q psy1873          71 VLVYSITSHKSF--EVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFV  148 (157)
Q Consensus        71 ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  148 (157)
                      ++|+|.+++.++  +....|+..+.....  .             .|+++|+||+|+...+.+..  ...+....+.+++
T Consensus        84 l~v~d~~~~~~~~~~~~~~~~~~l~~~~~--~-------------~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~  146 (168)
T cd01897          84 LFLFDPSETCGYSLEEQLSLFEEIKPLFK--N-------------KPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVL  146 (168)
T ss_pred             EEEEeCCcccccchHHHHHHHHHHHhhcC--c-------------CCeEEEEEccccCchhhHHH--HHHhhhhccCceE
Confidence            999999987654  556667776654321  2             99999999999966544432  4556666678999


Q ss_pred             EeccccCCC
Q psy1873         149 EASAKQDDY  157 (157)
Q Consensus       149 e~Sa~~~~~  157 (157)
                      ++||++|+|
T Consensus       147 ~~Sa~~~~g  155 (168)
T cd01897         147 KISTLTEEG  155 (168)
T ss_pred             EEEecccCC
Confidence            999999986

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04155 Arl3 Arl3 subfamily

Probab=99.91  E-value=1.7e-23  Score=140.30  Aligned_cols=135  Identities=21%  Similarity=0.299  Sum_probs=103.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||++++.+..+. .+.+|.+..+ ..+..++  ..+.+||++|+..+...+..+++.++++++|+|+++..
T Consensus        20 ~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~-~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~   95 (173)
T cd04155          20 LGLDNAGKTTILKQLASEDIS-HITPTQGFNI-KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKK   95 (173)
T ss_pred             EccCCCCHHHHHHHHhcCCCc-ccCCCCCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHH
Confidence            699999999999999987654 3456665332 3344444  56899999999999888999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC--------cEEEecc
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA--------GFVEASA  152 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~e~Sa  152 (157)
                      ++.....++..+........             +|+++++||+|+.+...     ...+.+..++        +++++||
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~-------------~p~ivv~nK~D~~~~~~-----~~~i~~~l~~~~~~~~~~~~~~~Sa  157 (173)
T cd04155          96 RLEEAGAELVELLEEEKLAG-------------VPVLVFANKQDLATAAP-----AEEIAEALNLHDLRDRTWHIQACSA  157 (173)
T ss_pred             HHHHHHHHHHHHHhChhhcC-------------CCEEEEEECCCCccCCC-----HHHHHHHcCCcccCCCeEEEEEeEC
Confidence            99998888888776544333             99999999999854321     2223333342        4789999


Q ss_pred             ccCCC
Q psy1873         153 KQDDY  157 (157)
Q Consensus       153 ~~~~~  157 (157)
                      ++|+|
T Consensus       158 ~~~~g  162 (173)
T cd04155         158 KTGEG  162 (173)
T ss_pred             CCCCC
Confidence            99987

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01898 Obg Obg subfamily

Probab=99.91  E-value=1.4e-23  Score=140.15  Aligned_cols=143  Identities=18%  Similarity=0.168  Sum_probs=96.5

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCCccceEEEEEEECCeEEEEEEEeCCCCc----cCcCchhhhc---cCCCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD----EYSIFPAQYS---MDIHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~---~~~~~~il   72 (157)
                      ||.+|||||||++++.+.... ..+..+........+..++. ..+.+||+||..    ....+...++   +.+|++++
T Consensus         6 vG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~   84 (170)
T cd01898           6 VGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLH   84 (170)
T ss_pred             ECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEE
Confidence            699999999999999876542 11111211111122233332 468999999964    2223444443   45999999


Q ss_pred             EEECCCh-hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-hCCcEEEe
Q psy1873          73 VYSITSH-KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES-WKAGFVEA  150 (157)
Q Consensus        73 v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~e~  150 (157)
                      |+|++++ ++++.+..|...+......            ....|+++|+||+|+.+...+. .....+... .+.+++++
T Consensus        85 v~D~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~  151 (170)
T cd01898          85 VIDLSGDDDPVEDYKTIRNELELYNPE------------LLEKPRIVVLNKIDLLDEEELF-ELLKELLKELWGKPVFPI  151 (170)
T ss_pred             EEecCCCCCHHHHHHHHHHHHHHhCcc------------ccccccEEEEEchhcCCchhhH-HHHHHHHhhCCCCCEEEE
Confidence            9999999 7999998888887665321            1128999999999986654443 334445555 36899999


Q ss_pred             ccccCCC
Q psy1873         151 SAKQDDY  157 (157)
Q Consensus       151 Sa~~~~~  157 (157)
                      ||+++.|
T Consensus       152 Sa~~~~g  158 (170)
T cd01898         152 SALTGEG  158 (170)
T ss_pred             ecCCCCC
Confidence            9999976

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.91  E-value=1.7e-24  Score=140.85  Aligned_cols=121  Identities=23%  Similarity=0.237  Sum_probs=88.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCc-----cCcCchhhhccCCCEEEEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD-----EYSIFPAQYSMDIHGYVLVYS   75 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~~~~ilv~d   75 (157)
                      ||++|||||||+++|.+..+.  +.+|++..+      ..     .+||++|+.     .+..+.+ .++++|++|+|||
T Consensus         6 iG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~------~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d   71 (142)
T TIGR02528         6 IGSVGCGKTTLTQALQGEEIL--YKKTQAVEY------ND-----GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS   71 (142)
T ss_pred             ECCCCCCHHHHHHHHcCCccc--cccceeEEE------cC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence            699999999999999987652  334443222      11     579999983     2333333 4789999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEecccc
Q psy1873          76 ITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVEASAKQ  154 (157)
Q Consensus        76 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~  154 (157)
                      ++++.++.. ..|...    .   .             .|+++|+||+|+.+ +....+++..+++..+. +++++||++
T Consensus        72 ~~~~~s~~~-~~~~~~----~---~-------------~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~  129 (142)
T TIGR02528        72 ATDPESRFP-PGFASI----F---V-------------KPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVD  129 (142)
T ss_pred             CCCCCcCCC-hhHHHh----c---c-------------CCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCC
Confidence            999998755 233221    1   1             58999999999864 34456677888888876 899999999


Q ss_pred             CCC
Q psy1873         155 DDY  157 (157)
Q Consensus       155 ~~~  157 (157)
                      |+|
T Consensus       130 ~~g  132 (142)
T TIGR02528       130 EQG  132 (142)
T ss_pred             CCC
Confidence            986

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=5.2e-24  Score=145.47  Aligned_cols=139  Identities=21%  Similarity=0.206  Sum_probs=96.4

Q ss_pred             CCCCCCChhhhHhhhhc--ccccccc------------cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVD--GQFVDSY------------DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM   65 (157)
Q Consensus         1 vG~~~~GKssli~~~~~--~~~~~~~------------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   65 (157)
                      +|.++||||||+++|+.  +.+...+            ..+.+..+ .....++...+.+.+||++|+++|...+..+++
T Consensus         8 vG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~   87 (194)
T cd01891           8 IAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLS   87 (194)
T ss_pred             EecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHH
Confidence            69999999999999997  4444332            12233222 333445556678999999999999999999999


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHH---
Q psy1873          66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM-ISYDEGKRLAE---  141 (157)
Q Consensus        66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~-~~~~~~~~~~~---  141 (157)
                      .+|++++|||+++.. +.....++..+..    ..             +|+++++||+|+...+. ...++...+..   
T Consensus        88 ~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~-------------~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~  149 (194)
T cd01891          88 MVDGVLLLVDASEGP-MPQTRFVLKKALE----LG-------------LKPIVVINKIDRPDARPEEVVDEVFDLFIELG  149 (194)
T ss_pred             hcCEEEEEEECCCCc-cHHHHHHHHHHHH----cC-------------CCEEEEEECCCCCCCCHHHHHHHHHHHHHHhC
Confidence            999999999998742 2333333333322    12             89999999999864322 12334444442   


Q ss_pred             ----HhCCcEEEeccccCCC
Q psy1873         142 ----SWKAGFVEASAKQDDY  157 (157)
Q Consensus       142 ----~~~~~~~e~Sa~~~~~  157 (157)
                          ..+++++++||++|.|
T Consensus       150 ~~~~~~~~~iv~~Sa~~g~~  169 (194)
T cd01891         150 ATEEQLDFPVLYASAKNGWA  169 (194)
T ss_pred             CccccCccCEEEeehhcccc
Confidence                2367999999999975

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.91  E-value=5.9e-23  Score=135.48  Aligned_cols=134  Identities=21%  Similarity=0.225  Sum_probs=96.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCc------hhhhcc--CCCEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF------PAQYSM--DIHGYV   71 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~~--~~~~~i   71 (157)
                      +|.+|||||||++++++..+.....+++. ......+.+++  ..+.+|||||+..+...      +..++.  .+|+++
T Consensus         2 ~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi   79 (158)
T cd01879           2 VGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIV   79 (158)
T ss_pred             CCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEE
Confidence            69999999999999998765433333333 33345566665  46799999999877653      455564  899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873          72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus        72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                      +|+|.++++...   .|+..+...    .             +|+++++||+|+.+...+... ...++..++++++++|
T Consensus        80 ~v~d~~~~~~~~---~~~~~~~~~----~-------------~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iS  138 (158)
T cd01879          80 NVVDATNLERNL---YLTLQLLEL----G-------------LPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTS  138 (158)
T ss_pred             EEeeCCcchhHH---HHHHHHHHc----C-------------CCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEE
Confidence            999998865432   333333221    2             899999999999765554433 4677788899999999


Q ss_pred             cccCCC
Q psy1873         152 AKQDDY  157 (157)
Q Consensus       152 a~~~~~  157 (157)
                      |++|+|
T Consensus       139 a~~~~~  144 (158)
T cd01879         139 ARKGEG  144 (158)
T ss_pred             ccCCCC
Confidence            999976

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.91  E-value=1.9e-23  Score=132.00  Aligned_cols=112  Identities=29%  Similarity=0.444  Sum_probs=83.3

Q ss_pred             CCCCCCChhhhHhhhhccccc--ccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSIT   77 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~   77 (157)
                      +|++|||||||+++|++..+.  ..+.++.+..+ .....+......+++||++|++.+...+..++..+|++|+|||++
T Consensus         5 ~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s   84 (119)
T PF08477_consen    5 LGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLS   84 (119)
T ss_dssp             ECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECC
T ss_pred             ECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCC
Confidence            699999999999999988776  22233333333 456667777777999999999999988888899999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCC
Q psy1873          78 SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD  124 (157)
Q Consensus        78 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~D  124 (157)
                      ++++++.+.+++..+.......            ..+|++|||||.|
T Consensus        85 ~~~s~~~~~~~~~~l~~~~~~~------------~~~piilv~nK~D  119 (119)
T PF08477_consen   85 DPESLEYLSQLLKWLKNIRKRD------------KNIPIILVGNKSD  119 (119)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHS------------SCSEEEEEEE-TC
T ss_pred             ChHHHHHHHHHHHHHHHHHccC------------CCCCEEEEEeccC
Confidence            9999999866544444333210            1299999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd04171 SelB SelB subfamily

Probab=99.90  E-value=2.5e-23  Score=138.00  Aligned_cols=135  Identities=19%  Similarity=0.152  Sum_probs=89.3

Q ss_pred             CCCCCCChhhhHhhhhcc---cccccccC--CccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDG---QFVDSYDP--TIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYS   75 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~---~~~~~~~~--t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d   75 (157)
                      +|++|||||||+++|++.   .+...+.+  |+... ...+.+.+ ...+.+||++|++++......++.++|++++|+|
T Consensus         6 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d   83 (164)
T cd04171           6 AGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLG-FAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVA   83 (164)
T ss_pred             EecCCCCHHHHHHHHhCcccccchhhhccCceEEee-eEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEE
Confidence            699999999999999863   23222222  22222 23334432 3578999999999887666677889999999999


Q ss_pred             CCC---hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHH---hCCcE
Q psy1873          76 ITS---HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM--ISYDEGKRLAES---WKAGF  147 (157)
Q Consensus        76 ~~~---~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~  147 (157)
                      +++   +++.+.+.    . .....  .             .|+++++||+|+.....  ....+...+.+.   .+.++
T Consensus        84 ~~~~~~~~~~~~~~----~-~~~~~--~-------------~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (164)
T cd04171          84 ADEGIMPQTREHLE----I-LELLG--I-------------KRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPI  143 (164)
T ss_pred             CCCCccHhHHHHHH----H-HHHhC--C-------------CcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcE
Confidence            987   34443332    1 11111  1             48999999999965321  122334444443   45799


Q ss_pred             EEeccccCCC
Q psy1873         148 VEASAKQDDY  157 (157)
Q Consensus       148 ~e~Sa~~~~~  157 (157)
                      +++||++|+|
T Consensus       144 ~~~Sa~~~~~  153 (164)
T cd04171         144 FPVSAVTGEG  153 (164)
T ss_pred             EEEeCCCCcC
Confidence            9999999986

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG0075|consensus

Probab=99.90  E-value=1.4e-24  Score=137.11  Aligned_cols=139  Identities=22%  Similarity=0.330  Sum_probs=111.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||..++|||||+|....+.+...-.||+|...   ..++...+.+.+||.+||++|+.+|..|.+++++++.|.|..+++
T Consensus        26 vGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm---rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~  102 (186)
T KOG0075|consen   26 VGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPD  102 (186)
T ss_pred             EeeccCCcceEEEEEeeccchhhhccccccee---EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcc
Confidence            68999999999999999999888889988432   234445678899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHH-----HHHHHHHhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDE-----GKRLAESWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~e~Sa~~~  155 (157)
                      .+...+..+..++....-..             +|++|.|||.|+++.  .+...     +..-.....+.+|-+|||+.
T Consensus       103 k~~~sr~EL~~LL~k~~l~g-------------ip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siScke~  167 (186)
T KOG0075|consen  103 KLEASRSELHDLLDKPSLTG-------------IPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCKEK  167 (186)
T ss_pred             cchhhHHHHHHHhcchhhcC-------------CcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEcCC
Confidence            99999988888888877665             999999999998642  22221     11111222357899999988


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      .|
T Consensus       168 ~N  169 (186)
T KOG0075|consen  168 VN  169 (186)
T ss_pred             cc
Confidence            75

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=4.6e-23  Score=150.66  Aligned_cols=144  Identities=17%  Similarity=0.112  Sum_probs=103.1

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCcc----CcCchhh---hccCCCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDE----YSIFPAQ---YSMDIHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~~~~il   72 (157)
                      ||.||||||||++++...+. ...|..|+.......+.+.+ ...+.+||+||..+    ...+...   .++.++++++
T Consensus       164 VG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~  242 (335)
T PRK12299        164 VGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLH  242 (335)
T ss_pred             EcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEE
Confidence            69999999999999997654 34444444433333444422 24578999999642    2234444   3456899999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecc
Q psy1873          73 VYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA  152 (157)
Q Consensus        73 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  152 (157)
                      |+|+++.++++.+..|..++......            +...|++||+||+|+.+...+..++...++...+++++++||
T Consensus       243 ViD~s~~~s~e~~~~~~~EL~~~~~~------------L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSA  310 (335)
T PRK12299        243 LVDIEAVDPVEDYKTIRNELEKYSPE------------LADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISA  310 (335)
T ss_pred             EEcCCCCCCHHHHHHHHHHHHHhhhh------------cccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEc
Confidence            99999988899998888888765432            122899999999999765544444555666667789999999


Q ss_pred             ccCCC
Q psy1873         153 KQDDY  157 (157)
Q Consensus       153 ~~~~~  157 (157)
                      ++++|
T Consensus       311 ktg~G  315 (335)
T PRK12299        311 VTGEG  315 (335)
T ss_pred             CCCCC
Confidence            99986

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.90  E-value=1e-22  Score=136.59  Aligned_cols=149  Identities=20%  Similarity=0.164  Sum_probs=98.1

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCcc----CcCch---hhhccCCCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDE----YSIFP---AQYSMDIHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~~~~il   72 (157)
                      +|++|||||||++++.+... ...+..++.......+.+++ ...+.+||+||...    ...+.   ...++++|++++
T Consensus         2 iG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~   80 (176)
T cd01881           2 VGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH   80 (176)
T ss_pred             CCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence            79999999999999998764 23333332222233344441 35579999999632    22332   234678999999


Q ss_pred             EEECCCh------hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc
Q psy1873          73 VYSITSH------KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAG  146 (157)
Q Consensus        73 v~d~~~~------~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  146 (157)
                      |+|.+++      .+++.+..|...+........ .      ......|+++|+||+|+..............+...+.+
T Consensus        81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~  153 (176)
T cd01881          81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETI-L------GLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAE  153 (176)
T ss_pred             EEeccCCccccccCHHHHHHHHHHHHHHhhhhhH-H------HHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCC
Confidence            9999998      578888777777765432100 0      00012999999999999765444433334455555678


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      ++++||+++.|
T Consensus       154 ~~~~Sa~~~~g  164 (176)
T cd01881         154 VVPISAKTEEG  164 (176)
T ss_pred             EEEEehhhhcC
Confidence            99999999876

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>KOG1673|consensus

Probab=99.89  E-value=3.8e-23  Score=131.86  Aligned_cols=142  Identities=20%  Similarity=0.378  Sum_probs=121.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|+++.|||||+-++.++.+...+..+.|..+ .+++.+.+..+.+.|||.+|++++..+.+...+++-+++++||++.+
T Consensus        26 lGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r  105 (205)
T KOG1673|consen   26 LGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRR  105 (205)
T ss_pred             ecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCch
Confidence            69999999999999999999888888889666 88889999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC-----CceecHHHHHHHHHHhCCcEEEecccc
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM-----ERMISYDEGKRLAESWKAGFVEASAKQ  154 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~e~Sa~~  154 (157)
                      +.++.+..|+.+.......-              +| ++||+|.|+.-     ...--..+++++++..+++.|.||+..
T Consensus       106 ~TLnSi~~WY~QAr~~NktA--------------iP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~  170 (205)
T KOG1673|consen  106 STLNSIKEWYRQARGLNKTA--------------IP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSH  170 (205)
T ss_pred             HHHHHHHHHHHHHhccCCcc--------------ce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccc
Confidence            99999999999987665432              44 67899999631     111223558889999999999999976


Q ss_pred             CCC
Q psy1873         155 DDY  157 (157)
Q Consensus       155 ~~~  157 (157)
                      ..|
T Consensus       171 sIN  173 (205)
T KOG1673|consen  171 SIN  173 (205)
T ss_pred             ccc
Confidence            654

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.88  E-value=1e-21  Score=143.41  Aligned_cols=143  Identities=18%  Similarity=0.171  Sum_probs=100.7

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCccC----cCchhhhcc---CCCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY----SIFPAQYSM---DIHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~~~~---~~~~~il   72 (157)
                      ||.||||||||++++...+. ...|..|+.......+.+++ ...+.+||+||....    ..+...+++   .++++++
T Consensus       163 vG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~  241 (329)
T TIGR02729       163 VGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLH  241 (329)
T ss_pred             EcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEE
Confidence            69999999999999998654 33444443333333344443 256799999997432    234444444   6899999


Q ss_pred             EEECCCh---hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEE
Q psy1873          73 VYSITSH---KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVE  149 (157)
Q Consensus        73 v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e  149 (157)
                      |+|+++.   ++++.+..|..++......            +...|++||+||+|+..... ..+..+.+++.++.++++
T Consensus       242 VvD~s~~~~~~~~e~l~~l~~EL~~~~~~------------l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~  308 (329)
T TIGR02729       242 LIDISPLDGRDPIEDYEIIRNELKKYSPE------------LAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFP  308 (329)
T ss_pred             EEcCccccccCHHHHHHHHHHHHHHhhhh------------hccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEE
Confidence            9999987   6788888777777655321            12389999999999965433 234456677777889999


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      +||++++|
T Consensus       309 iSAktg~G  316 (329)
T TIGR02729       309 ISALTGEG  316 (329)
T ss_pred             EEccCCcC
Confidence            99999986

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01878 HflX HflX subfamily

Probab=99.88  E-value=3.8e-22  Score=137.23  Aligned_cols=136  Identities=20%  Similarity=0.205  Sum_probs=91.9

Q ss_pred             CCCCCCChhhhHhhhhcccccc--cccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC--chh------hhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVD--SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI--FPA------QYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--~~~------~~~~~~~~~   70 (157)
                      +|++|||||||++++++..+..  .+.+|... ....+..++. ..+.+||++|..+...  +..      ..+..+|++
T Consensus        47 iG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~i  124 (204)
T cd01878          47 VGYTNAGKSTLFNALTGADVYAEDQLFATLDP-TTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLL  124 (204)
T ss_pred             ECCCCCCHHHHHHHHhcchhccCCccceeccc-eeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeE
Confidence            6999999999999999876432  22333332 2333344443 2688999999743211  111      125689999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA  150 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  150 (157)
                      ++|+|++++.+++.+..|...+.... ...             .|+++|+||+|+.+.....     ......+.+++++
T Consensus       125 i~v~D~~~~~~~~~~~~~~~~l~~~~-~~~-------------~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~  185 (204)
T cd01878         125 LHVVDASDPDYEEQIETVEKVLKELG-AED-------------IPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFI  185 (204)
T ss_pred             EEEEECCCCChhhHHHHHHHHHHHcC-cCC-------------CCEEEEEEccccCChHHHH-----HHhhcCCCceEEE
Confidence            99999999988887766655443332 222             8999999999986543321     3344556799999


Q ss_pred             ccccCCC
Q psy1873         151 SAKQDDY  157 (157)
Q Consensus       151 Sa~~~~~  157 (157)
                      ||++|.|
T Consensus       186 Sa~~~~g  192 (204)
T cd01878         186 SAKTGEG  192 (204)
T ss_pred             EcCCCCC
Confidence            9999986

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.88  E-value=5.8e-22  Score=132.05  Aligned_cols=139  Identities=17%  Similarity=0.144  Sum_probs=90.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEEC-CeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMN-NQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   78 (157)
                      +|++|||||||+++|+++.+...+.++..... ...+..+ +....+.+|||+|+..+..++...+..+|++++|+|+++
T Consensus         6 iG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~   85 (168)
T cd01887           6 MGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADD   85 (168)
T ss_pred             EecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCC
Confidence            69999999999999998877654333332222 2222332 135678999999999998888889999999999999998


Q ss_pred             hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecH-HHHHHHHH----Hh--CCcEEEec
Q psy1873          79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISY-DEGKRLAE----SW--KAGFVEAS  151 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~-~~~~~~~~----~~--~~~~~e~S  151 (157)
                      ...-+.. ..+..+. .   ..             .|+++|+||+|+........ .....+..    ..  .++++++|
T Consensus        86 ~~~~~~~-~~~~~~~-~---~~-------------~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  147 (168)
T cd01887          86 GVMPQTI-EAIKLAK-A---AN-------------VPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTS  147 (168)
T ss_pred             CccHHHH-HHHHHHH-H---cC-------------CCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEee
Confidence            4321111 1111121 1   12             89999999999864321111 11111111    11  36899999


Q ss_pred             cccCCC
Q psy1873         152 AKQDDY  157 (157)
Q Consensus       152 a~~~~~  157 (157)
                      |++|+|
T Consensus       148 a~~~~g  153 (168)
T cd01887         148 AKTGEG  153 (168)
T ss_pred             cccCCC
Confidence            999986

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.88  E-value=1.2e-21  Score=147.99  Aligned_cols=128  Identities=26%  Similarity=0.197  Sum_probs=96.1

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch--------hhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP--------AQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~~~~~~~   70 (157)
                      +|++|||||||+|+|++...  ...+..|+.+.+...+.+++.  .+.+|||+|...+....        ..+++.+|++
T Consensus       209 vG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~i  286 (442)
T TIGR00450       209 VGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--LIKLLDTAGIREHADFVERLGIEKSFKAIKQADLV  286 (442)
T ss_pred             ECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--EEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEE
Confidence            69999999999999998653  455555555555677777774  46899999987655432        3577899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA  150 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  150 (157)
                      ++|||++++.+++..  |+..+..    ..             .|+++|+||+|+...      +...+++.++.+++++
T Consensus       287 l~V~D~s~~~s~~~~--~l~~~~~----~~-------------~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~v  341 (442)
T TIGR00450       287 IYVLDASQPLTKDDF--LIIDLNK----SK-------------KPFILVLNKIDLKIN------SLEFFVSSKVLNSSNL  341 (442)
T ss_pred             EEEEECCCCCChhHH--HHHHHhh----CC-------------CCEEEEEECccCCCc------chhhhhhhcCCceEEE
Confidence            999999998887765  5554432    12             899999999998543      2244567778899999


Q ss_pred             ccccC
Q psy1873         151 SAKQD  155 (157)
Q Consensus       151 Sa~~~  155 (157)
                      ||+++
T Consensus       342 Sak~~  346 (442)
T TIGR00450       342 SAKQL  346 (442)
T ss_pred             EEecC
Confidence            99983

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>KOG3883|consensus

Probab=99.88  E-value=2.8e-21  Score=123.07  Aligned_cols=142  Identities=30%  Similarity=0.425  Sum_probs=117.0

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEEC-CeEEEEEEEeCCCCccC-cCchhhhccCCCEEEEEEEC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMN-NQDYDLKLVDTAGQDEY-SIFPAQYSMDIHGYVLVYSI   76 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~~~ilv~d~   76 (157)
                      .|-.+||||+|+.+++-+..  ..++.+|+.+.|...+.-+ +-.-.++++||.|-..+ ..+...|+.-+|+++||||.
T Consensus        15 cG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~   94 (198)
T KOG3883|consen   15 CGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSP   94 (198)
T ss_pred             ECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEecC
Confidence            37889999999999986654  3467899999886655543 33557899999997766 56888999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccC
Q psy1873          77 TSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD  155 (157)
Q Consensus        77 ~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  155 (157)
                      .|++||+.+.-.-+.|.......+             +|++|.|||+|+.+.+.+..+-+..||+.-.+..+|++|.+.
T Consensus        95 ~d~eSf~rv~llKk~Idk~KdKKE-------------vpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR  160 (198)
T KOG3883|consen   95 MDPESFQRVELLKKEIDKHKDKKE-------------VPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDR  160 (198)
T ss_pred             CCHHHHHHHHHHHHHHhhcccccc-------------ccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccc
Confidence            999999887655555555554444             999999999999999999999999999999999999999864

>cd01894 EngA1 EngA1 subfamily

Probab=99.87  E-value=5.2e-21  Score=125.90  Aligned_cols=132  Identities=18%  Similarity=0.103  Sum_probs=90.1

Q ss_pred             CCCCCCChhhhHhhhhccc--ccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC--------chhhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ--FVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI--------FPAQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~~~~   70 (157)
                      +|.+|||||||++++++..  +.....++...........++  ..+.+||+||...+..        .....+..+|++
T Consensus         3 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i   80 (157)
T cd01894           3 VGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEADVI   80 (157)
T ss_pred             cCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence            6999999999999999765  233444443333444445555  5688999999987654        233567889999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEE
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVE  149 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e  149 (157)
                      ++++|..++.+....  ++.+++...   .             .|+++|+||+|+.+....     .......++ ++++
T Consensus        81 i~v~d~~~~~~~~~~--~~~~~~~~~---~-------------~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~  137 (157)
T cd01894          81 LFVVDGREGLTPADE--EIAKYLRKS---K-------------KPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIP  137 (157)
T ss_pred             EEEEeccccCCccHH--HHHHHHHhc---C-------------CCEEEEEECcccCChHHH-----HHHHHhcCCCCeEE
Confidence            999999876544332  222232222   1             899999999998654322     222334566 8999


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      +||++|.|
T Consensus       138 ~Sa~~~~g  145 (157)
T cd01894         138 ISAEHGRG  145 (157)
T ss_pred             EecccCCC
Confidence            99999976

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK04213 GTP-binding protein; Provisional

Probab=99.87  E-value=4.3e-22  Score=136.64  Aligned_cols=133  Identities=22%  Similarity=0.221  Sum_probs=83.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCC-----------CccCcCchhhhcc-C--
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAG-----------QDEYSIFPAQYSM-D--   66 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~~~-~--   66 (157)
                      +|++|||||||+++|.+..+...+.+++... ...+.+.    .+.+||++|           ++.++.++..++. .  
T Consensus        15 ~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (201)
T PRK04213         15 VGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNAD   89 (201)
T ss_pred             ECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhh
Confidence            6999999999999999887655444443311 2222222    478999999           4556555555554 3  


Q ss_pred             -CCEEEEEEECCChhhHHHHHHHH--------HHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHH
Q psy1873          67 -IHGYVLVYSITSHKSFEVVQILY--------DKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGK  137 (157)
Q Consensus        67 -~~~~ilv~d~~~~~s~~~~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~  137 (157)
                       ++++++|.|.++...+  ...|.        ..+........             +|+++|+||+|+.+..   .+...
T Consensus        90 ~~~~vi~v~d~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~-------------~p~iiv~NK~Dl~~~~---~~~~~  151 (201)
T PRK04213         90 RILAAVLVVDGKSFIEI--IERWEGRGEIPIDVEMFDFLRELG-------------IPPIVAVNKMDKIKNR---DEVLD  151 (201)
T ss_pred             hheEEEEEEeCcccccc--ccccccCCCcHHHHHHHHHHHHcC-------------CCeEEEEECccccCcH---HHHHH
Confidence             4566677776543221  01221        11111111112             9999999999986543   34566


Q ss_pred             HHHHHhCC---------cEEEeccccCCC
Q psy1873         138 RLAESWKA---------GFVEASAKQDDY  157 (157)
Q Consensus       138 ~~~~~~~~---------~~~e~Sa~~~~~  157 (157)
                      .+++.+++         +++++||++| |
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~SA~~g-g  179 (201)
T PRK04213        152 EIAERLGLYPPWRQWQDIIAPISAKKG-G  179 (201)
T ss_pred             HHHHHhcCCccccccCCcEEEEecccC-C
Confidence            67777775         4799999998 6

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=1.7e-21  Score=148.80  Aligned_cols=137  Identities=23%  Similarity=0.144  Sum_probs=92.8

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccC----------cCch-hhhccCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY----------SIFP-AQYSMDI   67 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~~~-~~~~~~~   67 (157)
                      ||.+|||||||+++|++..+  ......|+.+.....+.+++..  +.+|||+|..+.          ..+. ..+++.+
T Consensus       217 iG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~a  294 (472)
T PRK03003        217 VGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAA  294 (472)
T ss_pred             ECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHHHHHHhcC
Confidence            69999999999999998765  3344444445556666777755  578999996322          2222 2357899


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee--cHHHHH-HHHHHhC
Q psy1873          68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI--SYDEGK-RLAESWK  144 (157)
Q Consensus        68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~--~~~~~~-~~~~~~~  144 (157)
                      |++++|+|++++.+++.+. ++..+..    ..             .|++||+||+|+.+....  ...+.. .+.....
T Consensus       295 d~vilV~Da~~~~s~~~~~-~~~~~~~----~~-------------~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~  356 (472)
T PRK03003        295 EVAVVLIDASEPISEQDQR-VLSMVIE----AG-------------RALVLAFNKWDLVDEDRRYYLEREIDRELAQVPW  356 (472)
T ss_pred             CEEEEEEeCCCCCCHHHHH-HHHHHHH----cC-------------CCEEEEEECcccCChhHHHHHHHHHHHhcccCCC
Confidence            9999999999998887764 3333332    12             899999999999642211  111121 2222234


Q ss_pred             CcEEEeccccCCC
Q psy1873         145 AGFVEASAKQDDY  157 (157)
Q Consensus       145 ~~~~e~Sa~~~~~  157 (157)
                      ++++++||++|.|
T Consensus       357 ~~~~~~SAk~g~g  369 (472)
T PRK03003        357 APRVNISAKTGRA  369 (472)
T ss_pred             CCEEEEECCCCCC
Confidence            6899999999986

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.86  E-value=2.7e-21  Score=132.92  Aligned_cols=116  Identities=19%  Similarity=0.284  Sum_probs=88.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCC-CEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI-HGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-~~~ilv~d~~~~   79 (157)
                      +|++|||||+|+++|..+.+...+.++............++...+++||+||+.+++..+..+++.+ +++|+|+|.++.
T Consensus         6 ~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~   85 (203)
T cd04105           6 LGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATF   85 (203)
T ss_pred             EcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccc
Confidence            6999999999999999988766654442221122222224456789999999999998888899998 999999999998


Q ss_pred             -hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873          80 -KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM  127 (157)
Q Consensus        80 -~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~  127 (157)
                       +++..+..|+..++......           ...+|++|++||+|+..
T Consensus        86 ~~~~~~~~~~l~~il~~~~~~-----------~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          86 QKNLKDVAEFLYDILTDLEKV-----------KNKIPVLIACNKQDLFT  123 (203)
T ss_pred             hhHHHHHHHHHHHHHHHHhhc-----------cCCCCEEEEecchhhcc
Confidence             78888888877776543211           12299999999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK15494 era GTPase Era; Provisional

Probab=99.86  E-value=1e-20  Score=138.91  Aligned_cols=134  Identities=16%  Similarity=0.114  Sum_probs=89.2

Q ss_pred             CCCCCCChhhhHhhhhcccccc--cccCCccceEEEEEEECCeEEEEEEEeCCCCcc-CcCchh-------hhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVD--SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDE-YSIFPA-------QYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~-------~~~~~~~~~   70 (157)
                      +|.+|||||||+|+|++.++..  ....|+.......+..++  ..+.+|||||+.. +..+..       ..+.++|++
T Consensus        58 vG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvi  135 (339)
T PRK15494         58 IGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLV  135 (339)
T ss_pred             EcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEE
Confidence            6999999999999999887642  222222333344555555  4579999999854 333322       236789999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcEE
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK--AGFV  148 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~  148 (157)
                      ++|+|.++  ++..+..++...+...   .             .|.++|+||+|+.+.   ...+...++...+  ..++
T Consensus       136 l~VvD~~~--s~~~~~~~il~~l~~~---~-------------~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~  194 (339)
T PRK15494        136 LLIIDSLK--SFDDITHNILDKLRSL---N-------------IVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLF  194 (339)
T ss_pred             EEEEECCC--CCCHHHHHHHHHHHhc---C-------------CCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEE
Confidence            99999654  4555544433332222   1             677889999998543   2345666665554  5899


Q ss_pred             EeccccCCC
Q psy1873         149 EASAKQDDY  157 (157)
Q Consensus       149 e~Sa~~~~~  157 (157)
                      ++||++|+|
T Consensus       195 ~iSAktg~g  203 (339)
T PRK15494        195 PISALSGKN  203 (339)
T ss_pred             EEeccCccC
Confidence            999999986

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.86  E-value=3.7e-21  Score=141.65  Aligned_cols=135  Identities=21%  Similarity=0.183  Sum_probs=90.6

Q ss_pred             CCCCCCChhhhHhhhhcccccc-cccCCccceEEEEEEECCeEEEEEEEeCCCCcc---------CcCchhhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVD-SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDE---------YSIFPAQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~~~~~~   70 (157)
                      +|.+|||||||+|+|++..+.. ....++.+.....+.+++. ..+.+|||+|..+         |...+ ..+.++|++
T Consensus       195 vG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADli  272 (351)
T TIGR03156       195 VGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLL  272 (351)
T ss_pred             ECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEE
Confidence            6999999999999999876532 2323333334555566332 3678999999732         21111 247789999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA  150 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  150 (157)
                      ++|+|++++.+.+.+..|...+ .......             .|+++|+||+|+.+...+     .... ....+++++
T Consensus       273 l~VvD~s~~~~~~~~~~~~~~L-~~l~~~~-------------~piIlV~NK~Dl~~~~~v-----~~~~-~~~~~~i~i  332 (351)
T TIGR03156       273 LHVVDASDPDREEQIEAVEKVL-EELGAED-------------IPQLLVYNKIDLLDEPRI-----ERLE-EGYPEAVFV  332 (351)
T ss_pred             EEEEECCCCchHHHHHHHHHHH-HHhccCC-------------CCEEEEEEeecCCChHhH-----HHHH-hCCCCEEEE
Confidence            9999999998888776554443 3332222             899999999998643222     1111 123468999


Q ss_pred             ccccCCC
Q psy1873         151 SAKQDDY  157 (157)
Q Consensus       151 Sa~~~~~  157 (157)
                      ||++|+|
T Consensus       333 SAktg~G  339 (351)
T TIGR03156       333 SAKTGEG  339 (351)
T ss_pred             EccCCCC
Confidence            9999986

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR00436 era GTP-binding protein Era

Probab=99.86  E-value=1.2e-20  Score=135.02  Aligned_cols=135  Identities=19%  Similarity=0.162  Sum_probs=90.4

Q ss_pred             CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC-c-------hhhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI-F-------PAQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~-------~~~~~~~~~~~   70 (157)
                      ||.+|||||||+|+|++.++.  .....|+..........++  ..+.+|||||...... +       ....+.++|++
T Consensus         6 iG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvv   83 (270)
T TIGR00436         6 LGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLI   83 (270)
T ss_pred             ECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEE
Confidence            699999999999999988753  3333454443333222233  4588999999764321 1       23457899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEE
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVE  149 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e  149 (157)
                      ++|+|.++..+.+  ..++ ..+...   .             .|+++|+||+|+...... ......++...+. ++++
T Consensus        84 l~VvD~~~~~~~~--~~i~-~~l~~~---~-------------~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~  143 (270)
T TIGR00436        84 LFVVDSDQWNGDG--EFVL-TKLQNL---K-------------RPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVP  143 (270)
T ss_pred             EEEEECCCCCchH--HHHH-HHHHhc---C-------------CCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEE
Confidence            9999999877664  2222 222221   2             899999999998643222 2344555555555 8999


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      +||++|+|
T Consensus       144 iSA~~g~g  151 (270)
T TIGR00436       144 ISALTGDN  151 (270)
T ss_pred             EecCCCCC
Confidence            99999986

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>KOG0071|consensus

Probab=99.86  E-value=1.5e-21  Score=122.60  Aligned_cols=138  Identities=17%  Similarity=0.225  Sum_probs=105.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|..++||||++++++-++.. ...||+|... .  .+..+.+.+.+||.+||+..+++|..|+.+..++|+|.|..+++
T Consensus        23 lGLd~aGKTtiLyKLkl~~~~-~~ipTvGFnv-e--tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~d   98 (180)
T KOG0071|consen   23 LGLDAAGKTTILYKLKLGQSV-TTIPTVGFNV-E--TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRD   98 (180)
T ss_pred             EecccCCceehhhHHhcCCCc-ccccccceeE-E--EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchh
Confidence            588999999999999876554 3457777432 2  33446688999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA-----ESWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~  155 (157)
                      .+++++..+-.++....             ++..|++|.+||.|++..+.  +.+...+.     +....-...+||.+|
T Consensus        99 r~eeAr~ELh~ii~~~e-------------m~~~~~LvlANkQDlp~A~~--pqei~d~leLe~~r~~~W~vqp~~a~~g  163 (180)
T KOG0071|consen   99 RIEEARNELHRIINDRE-------------MRDAIILILANKQDLPDAMK--PQEIQDKLELERIRDRNWYVQPSCALSG  163 (180)
T ss_pred             hHHHHHHHHHHHhCCHh-------------hhcceEEEEecCcccccccC--HHHHHHHhccccccCCccEeeccccccc
Confidence            99999887777665544             33499999999999966433  34443332     222345778888888


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       164 dg  165 (180)
T KOG0071|consen  164 DG  165 (180)
T ss_pred             hh
Confidence            64

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.86  E-value=1.1e-20  Score=147.30  Aligned_cols=133  Identities=21%  Similarity=0.219  Sum_probs=95.6

Q ss_pred             CCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCc------hhhhc--cCCCEEEE
Q psy1873           2 GYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF------PAQYS--MDIHGYVL   72 (157)
Q Consensus         2 G~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~~~~il   72 (157)
                      |++|||||||+|++++..+.....+++. +.....+.+++.  .+++||++|+.++...      ...++  .++|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998876443334433 333445556654  4789999999887654      23333  37899999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecc
Q psy1873          73 VYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA  152 (157)
Q Consensus        73 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  152 (157)
                      |+|.++.+.   ...+..++.+.    .             .|+++++||+|+.+.+.+. .+.+.+++.+|++++++||
T Consensus        79 VvDat~ler---~l~l~~ql~~~----~-------------~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA  137 (591)
T TIGR00437        79 VVDASNLER---NLYLTLQLLEL----G-------------IPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSA  137 (591)
T ss_pred             EecCCcchh---hHHHHHHHHhc----C-------------CCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEEC
Confidence            999987543   22233333221    2             9999999999986555554 3578888999999999999


Q ss_pred             ccCCC
Q psy1873         153 KQDDY  157 (157)
Q Consensus       153 ~~~~~  157 (157)
                      ++|+|
T Consensus       138 ~tg~G  142 (591)
T TIGR00437       138 TEGRG  142 (591)
T ss_pred             CCCCC
Confidence            99986

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.85  E-value=3.1e-20  Score=139.08  Aligned_cols=140  Identities=18%  Similarity=0.172  Sum_probs=96.7

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCcc----CcCchhhhcc---CCCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDE----YSIFPAQYSM---DIHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~---~~~~~il   72 (157)
                      ||.||||||||++++++.+. ...|..|+.......+.+++ ...+.+||+||...    ...+...+++   .++++++
T Consensus       164 VG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~  242 (424)
T PRK12297        164 VGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVH  242 (424)
T ss_pred             EcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEE
Confidence            69999999999999998764 23344443322222333331 34689999999643    2334455544   5899999


Q ss_pred             EEECCCh---hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEE
Q psy1873          73 VYSITSH---KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVE  149 (157)
Q Consensus        73 v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e  149 (157)
                      |+|+++.   +.++....|...+......            +...|++||+||+|+...    .+....+++.++.++++
T Consensus       243 VID~s~~~~~dp~e~~~~i~~EL~~y~~~------------L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~  306 (424)
T PRK12297        243 VIDMSGSEGRDPIEDYEKINKELKLYNPR------------LLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFP  306 (424)
T ss_pred             EEeCCccccCChHHHHHHHHHHHhhhchh------------ccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEE
Confidence            9999865   5677777776666654321            123899999999998432    34456677777789999


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      +||++++|
T Consensus       307 iSA~tgeG  314 (424)
T PRK12297        307 ISALTGQG  314 (424)
T ss_pred             EeCCCCCC
Confidence            99999986

>KOG4423|consensus

Probab=99.85  E-value=2.1e-23  Score=136.69  Aligned_cols=147  Identities=27%  Similarity=0.339  Sum_probs=123.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCe-EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQ-DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   78 (157)
                      +|+.|+|||+++.|++...|...|..|++..+ .+....+++ .+++++||+.||++|..|..-|++.+.+..+|||+++
T Consensus        31 ig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~  110 (229)
T KOG4423|consen   31 IGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTR  110 (229)
T ss_pred             eeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccc
Confidence            68999999999999999999989999999766 555566554 4678999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec-HHHHHHHHHHhCC-cEEEeccccCC
Q psy1873          79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS-YDEGKRLAESWKA-GFVEASAKQDD  156 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~-~~~~~~~~~~~~~-~~~e~Sa~~~~  156 (157)
                      ...|+....|...+.....-.          .-.++|+++.+||||........ ..+...+++++|. .++|+|+|++.
T Consensus       111 s~tfe~~skwkqdldsk~qLp----------ng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk  180 (229)
T KOG4423|consen  111 SLTFEPVSKWKQDLDSKLQLP----------NGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK  180 (229)
T ss_pred             cccccHHHHHHHhccCcccCC----------CCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence            999999999988876554421          12348999999999986533322 4677889999997 89999999987


Q ss_pred             C
Q psy1873         157 Y  157 (157)
Q Consensus       157 ~  157 (157)
                      |
T Consensus       181 n  181 (229)
T KOG4423|consen  181 N  181 (229)
T ss_pred             C
Confidence            6

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.85  E-value=1.3e-20  Score=143.01  Aligned_cols=127  Identities=25%  Similarity=0.232  Sum_probs=92.7

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc--------hhhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF--------PAQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~~~~~   70 (157)
                      +|++|||||||+|+|++...  ...+..|+.+.....+.+++  ..+.+|||+|...+...        ...+++.+|++
T Consensus       221 vG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~i  298 (449)
T PRK05291        221 AGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLV  298 (449)
T ss_pred             ECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEE
Confidence            69999999999999998764  34444454455566666766  45789999998765432        22367889999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA  150 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  150 (157)
                      ++|+|++++.+++....|..       ...             .|+++|+||+|+.+.....        ...+.+++++
T Consensus       299 l~VvD~s~~~s~~~~~~l~~-------~~~-------------~piiiV~NK~DL~~~~~~~--------~~~~~~~i~i  350 (449)
T PRK05291        299 LLVLDASEPLTEEDDEILEE-------LKD-------------KPVIVVLNKADLTGEIDLE--------EENGKPVIRI  350 (449)
T ss_pred             EEEecCCCCCChhHHHHHHh-------cCC-------------CCcEEEEEhhhccccchhh--------hccCCceEEE
Confidence            99999999888775543322       112             8999999999996533221        3345789999


Q ss_pred             ccccCCC
Q psy1873         151 SAKQDDY  157 (157)
Q Consensus       151 Sa~~~~~  157 (157)
                      ||++|+|
T Consensus       351 SAktg~G  357 (449)
T PRK05291        351 SAKTGEG  357 (449)
T ss_pred             EeeCCCC
Confidence            9999986

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.84  E-value=2e-20  Score=126.29  Aligned_cols=136  Identities=19%  Similarity=0.200  Sum_probs=87.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEE-EEEEECCeEEEEEEEeCCCCc----------cCcCchhhhccC---
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQD----------EYSIFPAQYSMD---   66 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~~~~~---   66 (157)
                      +|++|+|||||++++++..+...+.++.+.... .....++   .+.+||++|..          .+..+...+++.   
T Consensus        24 vG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~  100 (179)
T TIGR03598        24 AGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKREN  100 (179)
T ss_pred             EcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChh
Confidence            699999999999999987655444455543321 1122232   57899999953          223333345543   


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc--eecHHHHHHHHHHhC
Q psy1873          67 IHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER--MISYDEGKRLAESWK  144 (157)
Q Consensus        67 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~--~~~~~~~~~~~~~~~  144 (157)
                      ++++++|+|.+++-+..... .+ .++...   .             .|+++++||+|+....  ....++.+..+...+
T Consensus       101 ~~~ii~vvd~~~~~~~~~~~-~~-~~~~~~---~-------------~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~  162 (179)
T TIGR03598       101 LKGVVLLMDIRHPLKELDLE-ML-EWLRER---G-------------IPVLIVLTKADKLKKSELNKQLKKIKKALKKDA  162 (179)
T ss_pred             hcEEEEEecCCCCCCHHHHH-HH-HHHHHc---C-------------CCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence            57999999998754444432 22 222221   2             8999999999986432  223344555555554


Q ss_pred             --CcEEEeccccCCC
Q psy1873         145 --AGFVEASAKQDDY  157 (157)
Q Consensus       145 --~~~~e~Sa~~~~~  157 (157)
                        .+++++||++|+|
T Consensus       163 ~~~~v~~~Sa~~g~g  177 (179)
T TIGR03598       163 DDPSVQLFSSLKKTG  177 (179)
T ss_pred             CCCceEEEECCCCCC
Confidence              4899999999987

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>KOG0096|consensus

Probab=99.84  E-value=5.9e-21  Score=125.51  Aligned_cols=140  Identities=22%  Similarity=0.335  Sum_probs=119.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeE-EEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQD-YDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|+.|.|||+++.|.+.+.|...+.+|++-.....+...+.. +++..||++|++.+..+...++-.....|++||++.+
T Consensus        16 vGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr   95 (216)
T KOG0096|consen   16 VGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSR   95 (216)
T ss_pred             ecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeeeh
Confidence            699999999999999999999999999997665555555554 8999999999999999999988888889999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      -.+.++.+|...+......               +|++++|||.|... +++ ..+.-.+-+..++.|++.||+++-|
T Consensus        96 ~t~~n~~rwhrd~~rv~~N---------------iPiv~cGNKvDi~~-r~~-k~k~v~~~rkknl~y~~iSaksn~N  156 (216)
T KOG0096|consen   96 FTYKNVPRWHRDLVRVREN---------------IPIVLCGNKVDIKA-RKV-KAKPVSFHRKKNLQYYEISAKSNYN  156 (216)
T ss_pred             hhhhcchHHHHHHHHHhcC---------------CCeeeeccceeccc-ccc-ccccceeeecccceeEEeecccccc
Confidence            9999999999999888865               89999999999744 442 3445556677789999999998754

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.84  E-value=9.2e-20  Score=119.87  Aligned_cols=128  Identities=23%  Similarity=0.202  Sum_probs=89.9

Q ss_pred             CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc--------hhhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF--------PAQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~~~~~   70 (157)
                      +|++|+|||||++++++....  .....+........+..++  ..+.+||++|...+...        ....+..+|++
T Consensus         7 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (157)
T cd04164           7 VGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLV   84 (157)
T ss_pred             ECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEE
Confidence            699999999999999987642  2333333333344444444  56789999998665432        22456789999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA  150 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  150 (157)
                      ++|+|++++.+......+..       ...             .|+++++||+|+.+....       .....+.+++++
T Consensus        85 v~v~d~~~~~~~~~~~~~~~-------~~~-------------~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~  137 (157)
T cd04164          85 LFVIDASRGLDEEDLEILEL-------PAD-------------KPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAI  137 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHh-------hcC-------------CCEEEEEEchhcCCcccc-------ccccCCCceEEE
Confidence            99999998887766644332       112             999999999998654332       334446799999


Q ss_pred             ccccCCC
Q psy1873         151 SAKQDDY  157 (157)
Q Consensus       151 Sa~~~~~  157 (157)
                      ||+++.|
T Consensus       138 Sa~~~~~  144 (157)
T cd04164         138 SAKTGEG  144 (157)
T ss_pred             ECCCCCC
Confidence            9999976

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.84  E-value=4.3e-20  Score=143.93  Aligned_cols=137  Identities=20%  Similarity=0.190  Sum_probs=98.6

Q ss_pred             CCCCCCChhhhHhhhhccc-------ccccccCC------ccceE-EEE--EEE---CCeEEEEEEEeCCCCccCcCchh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ-------FVDSYDPT------IENTF-VKT--TRM---NNQDYDLKLVDTAGQDEYSIFPA   61 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~-------~~~~~~~t------~~~~~-~~~--~~~---~~~~~~~~i~D~~g~~~~~~~~~   61 (157)
                      ||+.++|||||+++|+...       +...+..+      .+..+ ...  +.+   ++..+.+.+|||||+.+|...+.
T Consensus         9 IGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v~   88 (595)
T TIGR01393         9 IAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVS   88 (595)
T ss_pred             ECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHHH
Confidence            6999999999999998642       22222222      23222 222  222   46678999999999999999999


Q ss_pred             hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873          62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE  141 (157)
Q Consensus        62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~  141 (157)
                      .+++.+|++|+|+|+++..+.+....|+..+ .    ..             +|+++++||+|+....  .......+++
T Consensus        89 ~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~-------------ipiIiViNKiDl~~~~--~~~~~~el~~  148 (595)
T TIGR01393        89 RSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----ND-------------LEIIPVINKIDLPSAD--PERVKKEIEE  148 (595)
T ss_pred             HHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cC-------------CCEEEEEECcCCCccC--HHHHHHHHHH
Confidence            9999999999999999977777666554433 1    12             8999999999985432  2233455666


Q ss_pred             HhCC---cEEEeccccCCC
Q psy1873         142 SWKA---GFVEASAKQDDY  157 (157)
Q Consensus       142 ~~~~---~~~e~Sa~~~~~  157 (157)
                      .+++   .++++||++|+|
T Consensus       149 ~lg~~~~~vi~vSAktG~G  167 (595)
T TIGR01393       149 VIGLDASEAILASAKTGIG  167 (595)
T ss_pred             HhCCCcceEEEeeccCCCC
Confidence            6776   389999999986

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.84  E-value=3e-20  Score=121.57  Aligned_cols=134  Identities=22%  Similarity=0.255  Sum_probs=92.1

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc------hhhh--ccCCCEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF------PAQY--SMDIHGYV   71 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~--~~~~~~~i   71 (157)
                      +|.||||||||+|++++.+.. ..+..++-+.....+...+  ..+.++|+||.......      ...+  ....|+++
T Consensus         6 vG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii   83 (156)
T PF02421_consen    6 VGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLII   83 (156)
T ss_dssp             EESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEE
T ss_pred             ECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEE
Confidence            699999999999999998764 3443333343356667767  55788999997554432      2223  36889999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873          72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus        72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                      +|.|.++.+.-   .....++++..                 +|++++.||+|+.....+.. +...+.+.+|+|.+.+|
T Consensus        84 ~VvDa~~l~r~---l~l~~ql~e~g-----------------~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~s  142 (156)
T PF02421_consen   84 VVVDATNLERN---LYLTLQLLELG-----------------IPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVS  142 (156)
T ss_dssp             EEEEGGGHHHH---HHHHHHHHHTT-----------------SSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEB
T ss_pred             EECCCCCHHHH---HHHHHHHHHcC-----------------CCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEE
Confidence            99999875432   23344444433                 99999999999865555443 37788888999999999


Q ss_pred             cccCCC
Q psy1873         152 AKQDDY  157 (157)
Q Consensus       152 a~~~~~  157 (157)
                      |++++|
T Consensus       143 a~~~~g  148 (156)
T PF02421_consen  143 ARTGEG  148 (156)
T ss_dssp             TTTTBT
T ss_pred             eCCCcC
Confidence            999986

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.84  E-value=1.1e-19  Score=137.77  Aligned_cols=136  Identities=23%  Similarity=0.165  Sum_probs=91.2

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch-----------hhhccCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP-----------AQYSMDI   67 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----------~~~~~~~   67 (157)
                      +|.+|+|||||+++|++...  ......|..+.+...+..++.  .+.+|||+|..++....           ...++.+
T Consensus       178 vG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~a  255 (429)
T TIGR03594       178 IGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERA  255 (429)
T ss_pred             ECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHHHHHHHhC
Confidence            69999999999999998654  233444444544555556664  57899999986655432           2357889


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHH-HHHHH----
Q psy1873          68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGK-RLAES----  142 (157)
Q Consensus        68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~-~~~~~----  142 (157)
                      |++|+|+|.+++.+.+... ++..+..    ..             .|+++|+||+|+.+. ....++.. .+...    
T Consensus       256 d~~ilV~D~~~~~~~~~~~-~~~~~~~----~~-------------~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~  316 (429)
T TIGR03594       256 DVVLLVLDATEGITEQDLR-IAGLILE----AG-------------KALVIVVNKWDLVKD-EKTREEFKKELRRKLPFL  316 (429)
T ss_pred             CEEEEEEECCCCccHHHHH-HHHHHHH----cC-------------CcEEEEEECcccCCC-HHHHHHHHHHHHHhcccC
Confidence            9999999999887766542 2222222    22             899999999998621 11112222 22222    


Q ss_pred             hCCcEEEeccccCCC
Q psy1873         143 WKAGFVEASAKQDDY  157 (157)
Q Consensus       143 ~~~~~~e~Sa~~~~~  157 (157)
                      .+++++++||++|.|
T Consensus       317 ~~~~vi~~SA~~g~~  331 (429)
T TIGR03594       317 DFAPIVFISALTGQG  331 (429)
T ss_pred             CCCceEEEeCCCCCC
Confidence            247999999999986

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.83  E-value=7.9e-20  Score=139.74  Aligned_cols=132  Identities=18%  Similarity=0.124  Sum_probs=86.7

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCcc--------CcCchhhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDE--------YSIFPAQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~~~~~~   70 (157)
                      ||.+|||||||+|+|++.... ....+++. +.....+.+++.  .+.+|||+|.+.        +......+++.+|++
T Consensus        44 vG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~i  121 (472)
T PRK03003         44 VGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAV  121 (472)
T ss_pred             EcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEE
Confidence            699999999999999987642 22233332 333455556664  478999999763        222345578899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEE
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVE  149 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e  149 (157)
                      |+|+|+++..++.. ..+...+. .   ..             .|+++|+||+|+....   .+....+  .+++ ..++
T Consensus       122 l~VvD~~~~~s~~~-~~i~~~l~-~---~~-------------~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~  178 (472)
T PRK03003        122 LFVVDATVGATATD-EAVARVLR-R---SG-------------KPVILAANKVDDERGE---ADAAALW--SLGLGEPHP  178 (472)
T ss_pred             EEEEECCCCCCHHH-HHHHHHHH-H---cC-------------CCEEEEEECccCCccc---hhhHHHH--hcCCCCeEE
Confidence            99999998765432 22222222 2   12             9999999999985421   1222222  3344 4579


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      +||++|.|
T Consensus       179 iSA~~g~g  186 (472)
T PRK03003        179 VSALHGRG  186 (472)
T ss_pred             EEcCCCCC
Confidence            99999986

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.83  E-value=3.6e-20  Score=122.63  Aligned_cols=122  Identities=14%  Similarity=0.043  Sum_probs=82.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch----hhhccCCCEEEEEEEC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP----AQYSMDIHGYVLVYSI   76 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----~~~~~~~~~~ilv~d~   76 (157)
                      ||.+|||||||++++.+.....  ..+.+.      .+...    .+||+||+......+    ...++.+|++++|+|.
T Consensus         7 iG~~~~GKstl~~~l~~~~~~~--~~~~~v------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~   74 (158)
T PRK15467          7 VGAVGAGKTTLFNALQGNYTLA--RKTQAV------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA   74 (158)
T ss_pred             ECCCCCCHHHHHHHHcCCCccC--ccceEE------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence            6999999999999987643211  122221      22222    269999974332222    1236899999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC--cEEEecccc
Q psy1873          77 TSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA--GFVEASAKQ  154 (157)
Q Consensus        77 ~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~e~Sa~~  154 (157)
                      ++.+++.  ..|+..+   .  ..             .|+++++||+|+..   ...+....++...++  |++++||++
T Consensus        75 ~~~~s~~--~~~~~~~---~--~~-------------~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~  131 (158)
T PRK15467         75 NDPESRL--PAGLLDI---G--VS-------------KRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHD  131 (158)
T ss_pred             CCccccc--CHHHHhc---c--CC-------------CCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCC
Confidence            9887752  2343332   1  12             78999999999854   234566777778875  999999999


Q ss_pred             CCC
Q psy1873         155 DDY  157 (157)
Q Consensus       155 ~~~  157 (157)
                      |+|
T Consensus       132 g~g  134 (158)
T PRK15467        132 PQS  134 (158)
T ss_pred             ccC
Confidence            986

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.82  E-value=2.7e-19  Score=139.06  Aligned_cols=135  Identities=20%  Similarity=0.175  Sum_probs=92.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|.+++|||||+++|.+..+...+.+++.... ...+.+++. ..+.+|||||++.|..++...+..+|++|+|+|.++.
T Consensus        93 ~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dg  171 (587)
T TIGR00487        93 MGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDG  171 (587)
T ss_pred             ECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCC
Confidence            69999999999999998877655444333222 334444432 2678999999999999999999999999999998874


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC---------CcEEEe
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK---------AGFVEA  150 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~e~  150 (157)
                      ..-+... .+...    ....             +|+++++||+|+...   ..++....+...+         .+++++
T Consensus       172 v~~qT~e-~i~~~----~~~~-------------vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~i  230 (587)
T TIGR00487       172 VMPQTIE-AISHA----KAAN-------------VPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPV  230 (587)
T ss_pred             CCHhHHH-HHHHH----HHcC-------------CCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEE
Confidence            3222211 11111    1112             899999999998542   2233333333322         479999


Q ss_pred             ccccCCC
Q psy1873         151 SAKQDDY  157 (157)
Q Consensus       151 Sa~~~~~  157 (157)
                      ||++|+|
T Consensus       231 SAktGeG  237 (587)
T TIGR00487       231 SALTGDG  237 (587)
T ss_pred             ECCCCCC
Confidence            9999987

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK11058 GTPase HflX; Provisional

Probab=99.82  E-value=2.7e-19  Score=134.61  Aligned_cols=137  Identities=17%  Similarity=0.094  Sum_probs=88.5

Q ss_pred             CCCCCCChhhhHhhhhcccccc-cccCCccceEEEEEEECCeEEEEEEEeCCCCccC--cCchhh------hccCCCEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVD-SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY--SIFPAQ------YSMDIHGYV   71 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~~------~~~~~~~~i   71 (157)
                      ||.+|||||||+|+|++..+.. ....++.+.....+.+.+. ..+.+|||+|..+.  ..++..      .+..+|++|
T Consensus       203 VG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL  281 (426)
T PRK11058        203 VGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLL  281 (426)
T ss_pred             ECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEE
Confidence            6999999999999999876532 2222222333344455442 25679999998442  222222      368899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-EEEe
Q psy1873          72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAG-FVEA  150 (157)
Q Consensus        72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~  150 (157)
                      +|+|++++.+++.+..|...+. ......             +|+++|+||+|+..... .  ...  ....+.+ ++++
T Consensus       282 ~VvDaS~~~~~e~l~~v~~iL~-el~~~~-------------~pvIiV~NKiDL~~~~~-~--~~~--~~~~~~~~~v~I  342 (426)
T PRK11058        282 HVVDAADVRVQENIEAVNTVLE-EIDAHE-------------IPTLLVMNKIDMLDDFE-P--RID--RDEENKPIRVWL  342 (426)
T ss_pred             EEEeCCCccHHHHHHHHHHHHH-HhccCC-------------CCEEEEEEcccCCCchh-H--HHH--HHhcCCCceEEE
Confidence            9999999988877754433332 222222             89999999999854211 1  111  1224555 4899


Q ss_pred             ccccCCC
Q psy1873         151 SAKQDDY  157 (157)
Q Consensus       151 Sa~~~~~  157 (157)
                      ||++|+|
T Consensus       343 SAktG~G  349 (426)
T PRK11058        343 SAQTGAG  349 (426)
T ss_pred             eCCCCCC
Confidence            9999986

>cd04163 Era Era subfamily

Probab=99.82  E-value=2.6e-19  Score=118.53  Aligned_cols=137  Identities=22%  Similarity=0.173  Sum_probs=87.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccc--cCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc--------hhhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSY--DPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF--------PAQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~~~~~   70 (157)
                      +|++|+|||||++++++.......  ..+.......  ........+.+||++|.......        ....+..+|++
T Consensus         9 ~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i   86 (168)
T cd04163           9 VGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRG--IYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLV   86 (168)
T ss_pred             ECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEE--EEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEE
Confidence            699999999999999987653221  1221111121  23333467889999997654332        33457888999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEE
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK-AGFVE  149 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e  149 (157)
                      ++|+|.+++  +.....++...+...   .             .|+++++||+|+........+....+....+ .++++
T Consensus        87 ~~v~d~~~~--~~~~~~~~~~~~~~~---~-------------~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  148 (168)
T cd04163          87 LFVVDASEP--IGEGDEFILELLKKS---K-------------TPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFP  148 (168)
T ss_pred             EEEEECCCc--cCchHHHHHHHHHHh---C-------------CCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEE
Confidence            999999987  222223333333222   2             8999999999986433333344455555554 58999


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      +||+++.|
T Consensus       149 ~s~~~~~~  156 (168)
T cd04163         149 ISALKGEN  156 (168)
T ss_pred             EEeccCCC
Confidence            99999875

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.82  E-value=3.1e-19  Score=135.46  Aligned_cols=151  Identities=17%  Similarity=0.106  Sum_probs=93.1

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCcc----CcCchh---hhccCCCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDE----YSIFPA---QYSMDIHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~---~~~~~~~~~il   72 (157)
                      ||.||||||||+++|...+. ...|..|+.......+.+++  ..+.+||+||...    ...+..   ..+..++++|+
T Consensus       165 VG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~  242 (500)
T PRK12296        165 VGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVH  242 (500)
T ss_pred             EEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEE
Confidence            69999999999999997655 33444444433344445555  5689999999632    222222   23567899999


Q ss_pred             EEECCCh----hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEE
Q psy1873          73 VYSITSH----KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFV  148 (157)
Q Consensus        73 v~d~~~~----~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  148 (157)
                      |+|+++.    +.++.+..+..++.........   ..-...+...|++||+||+|+.+...+. +.........+++++
T Consensus       243 VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~---~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g~~Vf  318 (500)
T PRK12296        243 VVDCATLEPGRDPLSDIDALEAELAAYAPALDG---DLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEARGWPVF  318 (500)
T ss_pred             EECCcccccccCchhhHHHHHHHHHHhhhcccc---cchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHHcCCeEE
Confidence            9999863    3455555555555443320000   0000002238999999999996543332 222333344578999


Q ss_pred             EeccccCCC
Q psy1873         149 EASAKQDDY  157 (157)
Q Consensus       149 e~Sa~~~~~  157 (157)
                      ++||++++|
T Consensus       319 ~ISA~tgeG  327 (500)
T PRK12296        319 EVSAASREG  327 (500)
T ss_pred             EEECCCCCC
Confidence            999999986

>cd00880 Era_like Era (E

Probab=99.82  E-value=3.3e-19  Score=116.94  Aligned_cols=138  Identities=20%  Similarity=0.087  Sum_probs=92.5

Q ss_pred             CCCCCCChhhhHhhhhccccc-c-cccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchh-------hhccCCCEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-D-SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA-------QYSMDIHGYV   71 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~~~~~~~~i   71 (157)
                      +|++|+|||||++++++.... . ...++............. ...+.+||++|...+.....       .++..+|+++
T Consensus         2 ~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il   80 (163)
T cd00880           2 FGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL   80 (163)
T ss_pred             cCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence            699999999999999876543 2 222222233333333322 45789999999877665433       4778999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHH---HHHHHHHHhCCcEE
Q psy1873          72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYD---EGKRLAESWKAGFV  148 (157)
Q Consensus        72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~  148 (157)
                      +++|.++..+..... +.......    .             .|+++++||+|+.........   .........+++++
T Consensus        81 ~v~~~~~~~~~~~~~-~~~~~~~~----~-------------~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (163)
T cd00880          81 FVVDADLRADEEEEK-LLELLRER----G-------------KPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVI  142 (163)
T ss_pred             EEEeCCCCCCHHHHH-HHHHHHhc----C-------------CeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceE
Confidence            999999987766654 33332221    2             999999999998665433322   12233344457999


Q ss_pred             EeccccCCC
Q psy1873         149 EASAKQDDY  157 (157)
Q Consensus       149 e~Sa~~~~~  157 (157)
                      ++||++++|
T Consensus       143 ~~sa~~~~~  151 (163)
T cd00880         143 AVSALTGEG  151 (163)
T ss_pred             EEeeeccCC
Confidence            999999875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd01895 EngA2 EngA2 subfamily

Probab=99.82  E-value=8.9e-19  Score=116.82  Aligned_cols=137  Identities=22%  Similarity=0.161  Sum_probs=87.9

Q ss_pred             CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc-----------hhhhccCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF-----------PAQYSMDI   67 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~~~~~~~   67 (157)
                      +|.+|+|||||++++++....  .....+........+..++..  +.+||++|.......           ....+..+
T Consensus         8 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~   85 (174)
T cd01895           8 IGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERA   85 (174)
T ss_pred             EcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccchhccHHHHHHHHHHHHHhhc
Confidence            699999999999999987642  222233333334455555544  678999997544211           12245789


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHH-HHHHHHh---
Q psy1873          68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEG-KRLAESW---  143 (157)
Q Consensus        68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~-~~~~~~~---  143 (157)
                      |++++|+|.+++.+.... .++..+..    ..             .|+++++||+|+........++. ..+.+.+   
T Consensus        86 d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~-------------~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  147 (174)
T cd01895          86 DVVLLVIDATEGITEQDL-RIAGLILE----EG-------------KALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFL  147 (174)
T ss_pred             CeEEEEEeCCCCcchhHH-HHHHHHHh----cC-------------CCEEEEEeccccCCccHHHHHHHHHHHHhhcccc
Confidence            999999999988775543 22222221    12             89999999999865432222222 2222333   


Q ss_pred             -CCcEEEeccccCCC
Q psy1873         144 -KAGFVEASAKQDDY  157 (157)
Q Consensus       144 -~~~~~e~Sa~~~~~  157 (157)
                       +.+++++||++++|
T Consensus       148 ~~~~~~~~Sa~~~~~  162 (174)
T cd01895         148 DYAPIVFISALTGQG  162 (174)
T ss_pred             cCCceEEEeccCCCC
Confidence             36899999999986

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG0076|consensus

Probab=99.82  E-value=2.5e-20  Score=120.99  Aligned_cols=141  Identities=21%  Similarity=0.260  Sum_probs=106.5

Q ss_pred             CCCCCCChhhhHhhhhcc-------cccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDG-------QFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLV   73 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   73 (157)
                      +|..++|||||+.+....       --.....+|++-. ..++.+.  ...+.+||.+||+..+++|..|+..++++|++
T Consensus        23 lgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLn-ig~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~v   99 (197)
T KOG0076|consen   23 LGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLN-IGTIEVC--NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYV   99 (197)
T ss_pred             eccccCCchhHHHHHHHHHHhhhcCCCHHHeeccccee-ecceeec--cceeEEEEcCChHHHHHHHHHHHHHhceeEEe
Confidence            599999999999887532       1123455666633 2333444  46789999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHH-HHHHHHHh---CCcEEE
Q psy1873          74 YSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDE-GKRLAESW---KAGFVE  149 (157)
Q Consensus        74 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~-~~~~~~~~---~~~~~e  149 (157)
                      +|.++++.|+.....+..+........             +|+++.+||.|+.+......-+ ....+...   ..++..
T Consensus       100 iDa~~~eR~~~~~t~~~~v~~~E~leg-------------~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~p  166 (197)
T KOG0076|consen  100 IDATDRERFEESKTAFEKVVENEKLEG-------------APVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQP  166 (197)
T ss_pred             ecCCCHHHHHHHHHHHHHHHHHHHhcC-------------CchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCcccc
Confidence            999999999999888888887776655             9999999999997654432221 11112222   268999


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      +||.+|+|
T Consensus       167 vSal~geg  174 (197)
T KOG0076|consen  167 VSALTGEG  174 (197)
T ss_pred             chhhhccc
Confidence            99999986

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.82  E-value=2.7e-19  Score=139.37  Aligned_cols=134  Identities=19%  Similarity=0.226  Sum_probs=95.5

Q ss_pred             CCCCCCChhhhHhhhhcc---cccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEEC
Q psy1873           1 MGYRSVGKSSLSIQFVDG---QFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSI   76 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~---~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~   76 (157)
                      +|.+++|||||+++|++.   .+..++..++.... ...+..++  ..+.+||+||+++|.......+.++|++|+|+|.
T Consensus         6 iG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa   83 (581)
T TIGR00475         6 AGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDA   83 (581)
T ss_pred             ECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEEC
Confidence            699999999999999863   33333444444222 33455555  6789999999999988777888999999999999


Q ss_pred             CC---hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCcee--cHHHHHHHHHHh----CCc
Q psy1873          77 TS---HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERMI--SYDEGKRLAESW----KAG  146 (157)
Q Consensus        77 ~~---~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~  146 (157)
                      ++   +++++.+.     ++...   .             +| ++|++||+|+.+...+  ..++...++...    +++
T Consensus        84 ~~G~~~qT~ehl~-----il~~l---g-------------i~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~  142 (581)
T TIGR00475        84 DEGVMTQTGEHLA-----VLDLL---G-------------IPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAK  142 (581)
T ss_pred             CCCCcHHHHHHHH-----HHHHc---C-------------CCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence            98   45554442     22222   1             67 9999999999654432  234455555554    478


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      ++++||++|+|
T Consensus       143 ii~vSA~tG~G  153 (581)
T TIGR00475       143 IFKTSAKTGQG  153 (581)
T ss_pred             EEEEeCCCCCC
Confidence            99999999986

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.81  E-value=2e-19  Score=121.84  Aligned_cols=139  Identities=19%  Similarity=0.090  Sum_probs=92.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCc--------------cceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTI--------------ENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM   65 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   65 (157)
                      +|.+|+|||||++++++.........+.              +... .....+......+.+||++|...+...+..++.
T Consensus         5 ~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~   84 (189)
T cd00881           5 AGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLS   84 (189)
T ss_pred             EeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHH
Confidence            5999999999999998876654331111              0001 111122223467899999999988888888999


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHHH-
Q psy1873          66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI--SYDEGKRLAES-  142 (157)
Q Consensus        66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~--~~~~~~~~~~~-  142 (157)
                      .+|++++|+|.+++.+.... .++..+..    ..             .|+++++||+|+......  ...+.....+. 
T Consensus        85 ~~d~~i~v~d~~~~~~~~~~-~~~~~~~~----~~-------------~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~  146 (189)
T cd00881          85 VSDGAILVVDANEGVQPQTR-EHLRIARE----GG-------------LPIIVAINKIDRVGEEDLEEVLREIKELLGLI  146 (189)
T ss_pred             hcCEEEEEEECCCCCcHHHH-HHHHHHHH----CC-------------CCeEEEEECCCCcchhcHHHHHHHHHHHHccc
Confidence            99999999999876654322 33333222    22             999999999998652221  12333333332 


Q ss_pred             -------------hCCcEEEeccccCCC
Q psy1873         143 -------------WKAGFVEASAKQDDY  157 (157)
Q Consensus       143 -------------~~~~~~e~Sa~~~~~  157 (157)
                                   ...+++++||++|.|
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~g  174 (189)
T cd00881         147 GFISTKEEGTRNGLLVPIVPGSALTGIG  174 (189)
T ss_pred             cccchhhhhcccCCcceEEEEecccCcC
Confidence                         346899999999976

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01889 SelB_euk SelB subfamily

Probab=99.81  E-value=2.1e-19  Score=122.53  Aligned_cols=139  Identities=19%  Similarity=0.148  Sum_probs=83.6

Q ss_pred             CCCCCCChhhhHhhhhcc----cccccc-----cCCccceE-EEEEE----------ECCeEEEEEEEeCCCCccCcCch
Q psy1873           1 MGYRSVGKSSLSIQFVDG----QFVDSY-----DPTIENTF-VKTTR----------MNNQDYDLKLVDTAGQDEYSIFP   60 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~----~~~~~~-----~~t~~~~~-~~~~~----------~~~~~~~~~i~D~~g~~~~~~~~   60 (157)
                      +|++++|||||+++|+..    .+...+     ..|+...+ ...+.          .++..+.+.+||+||+..+....
T Consensus         6 ~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~   85 (192)
T cd01889           6 LGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRTI   85 (192)
T ss_pred             EecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHHH
Confidence            699999999999999862    111111     12333222 22221          12346788999999997543333


Q ss_pred             hhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce--ecHHHHHH
Q psy1873          61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM--ISYDEGKR  138 (157)
Q Consensus        61 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~--~~~~~~~~  138 (157)
                      ......+|++++|+|.++....+....+.  +....   .             .|+++++||+|+.....  ...++..+
T Consensus        86 ~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~---~-------------~~~iiv~NK~Dl~~~~~~~~~~~~~~~  147 (192)
T cd01889          86 IGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL---C-------------KKLIVVLNKIDLIPEEERERKIEKMKK  147 (192)
T ss_pred             HHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc---C-------------CCEEEEEECcccCCHHHHHHHHHHHHH
Confidence            33456679999999998754433332221  11111   2             89999999999864222  12222222


Q ss_pred             H-HH------HhCCcEEEeccccCCC
Q psy1873         139 L-AE------SWKAGFVEASAKQDDY  157 (157)
Q Consensus       139 ~-~~------~~~~~~~e~Sa~~~~~  157 (157)
                      . ..      ..+++++++||++|+|
T Consensus       148 ~l~~~~~~~~~~~~~vi~iSa~~g~g  173 (192)
T cd01889         148 KLQKTLEKTRFKNSPIIPVSAKPGGG  173 (192)
T ss_pred             HHHHHHHhcCcCCCCEEEEeccCCCC
Confidence            1 11      1357999999999987

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK00089 era GTPase Era; Reviewed

Probab=99.81  E-value=4.8e-19  Score=128.05  Aligned_cols=137  Identities=22%  Similarity=0.192  Sum_probs=88.8

Q ss_pred             CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC--------chhhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI--------FPAQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~~~~   70 (157)
                      +|++|||||||+|++++.++.  .....|...........+  ...+.+|||||......        .....+.++|++
T Consensus        11 iG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~i   88 (292)
T PRK00089         11 VGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLV   88 (292)
T ss_pred             ECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEE
Confidence            699999999999999987763  222233333222222222  36789999999755432        223356789999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEE
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK-AGFVE  149 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e  149 (157)
                      ++|+|+++.  +.....++...+..   ..             .|+++|+||+|+.............+.+..+ .++++
T Consensus        89 l~vvd~~~~--~~~~~~~i~~~l~~---~~-------------~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~  150 (292)
T PRK00089         89 LFVVDADEK--IGPGDEFILEKLKK---VK-------------TPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVP  150 (292)
T ss_pred             EEEEeCCCC--CChhHHHHHHHHhh---cC-------------CCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEE
Confidence            999999882  22222333333321   12             8999999999996433333344555655555 58999


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      +||++|+|
T Consensus       151 iSA~~~~g  158 (292)
T PRK00089        151 ISALKGDN  158 (292)
T ss_pred             ecCCCCCC
Confidence            99999976

>KOG0074|consensus

Probab=99.81  E-value=2.3e-19  Score=112.92  Aligned_cols=140  Identities=21%  Similarity=0.292  Sum_probs=106.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|-.++|||||+..+...... ...||.|.. .+.+..++ .+.+.+||.+||...++.|..|+.+.|++|+|+|.+|..
T Consensus        23 lGldnAGKTT~LKqL~sED~~-hltpT~GFn-~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~k   99 (185)
T KOG0074|consen   23 LGLDNAGKTTFLKQLKSEDPR-HLTPTNGFN-TKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEK   99 (185)
T ss_pred             EecCCCcchhHHHHHccCChh-hccccCCcc-eEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchH
Confidence            588999999999998865543 334666643 33444443 478999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHH----HHHhCCcEEEeccccCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRL----AESWKAGFVEASAKQDD  156 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~~~  156 (157)
                      .|+++.+.+.++++...-..             +|++|.+||+|+.....+. +.+.++    .+.....+.+|||.+++
T Consensus       100 rfeE~~~el~ELleeeKl~~-------------vpvlIfankQdlltaa~~e-eia~klnl~~lrdRswhIq~csals~e  165 (185)
T KOG0074|consen  100 RFEEISEELVELLEEEKLAE-------------VPVLIFANKQDLLTAAKVE-EIALKLNLAGLRDRSWHIQECSALSLE  165 (185)
T ss_pred             hHHHHHHHHHHHhhhhhhhc-------------cceeehhhhhHHHhhcchH-HHHHhcchhhhhhceEEeeeCcccccc
Confidence            99999988888887776444             9999999999986544432 222221    12223578899999887


Q ss_pred             C
Q psy1873         157 Y  157 (157)
Q Consensus       157 ~  157 (157)
                      |
T Consensus       166 g  166 (185)
T KOG0074|consen  166 G  166 (185)
T ss_pred             C
Confidence            5

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.81  E-value=4.4e-19  Score=134.61  Aligned_cols=130  Identities=18%  Similarity=0.119  Sum_probs=88.7

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccC--------cCchhhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY--------SIFPAQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~~~~~~~~   70 (157)
                      ||.+|||||||+|+|++...  ...+..+..+.....+.+++  ..+.+|||+|....        ......++..+|++
T Consensus         7 vG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~i   84 (435)
T PRK00093          7 VGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVI   84 (435)
T ss_pred             ECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEE
Confidence            69999999999999998764  33333333344455566666  66899999998762        22234567899999


Q ss_pred             EEEEECCChhhH--HHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cE
Q psy1873          71 VLVYSITSHKSF--EVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GF  147 (157)
Q Consensus        71 ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~  147 (157)
                      |+|+|.+++.+.  ..+..|+..    .   .             .|+++|+||+|+.+.    ......+ ..+++ .+
T Consensus        85 l~vvd~~~~~~~~~~~~~~~l~~----~---~-------------~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~  139 (435)
T PRK00093         85 LFVVDGRAGLTPADEEIAKILRK----S---N-------------KPVILVVNKVDGPDE----EADAYEF-YSLGLGEP  139 (435)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH----c---C-------------CcEEEEEECccCccc----hhhHHHH-HhcCCCCC
Confidence            999999875332  223333332    2   2             899999999997441    1222222 35576 48


Q ss_pred             EEeccccCCC
Q psy1873         148 VEASAKQDDY  157 (157)
Q Consensus       148 ~e~Sa~~~~~  157 (157)
                      +++||++|.|
T Consensus       140 ~~iSa~~g~g  149 (435)
T PRK00093        140 YPISAEHGRG  149 (435)
T ss_pred             EEEEeeCCCC
Confidence            9999999986

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.80  E-value=6.3e-19  Score=120.32  Aligned_cols=137  Identities=18%  Similarity=0.121  Sum_probs=86.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCc----------cCcCchhhhccCC---
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD----------EYSIFPAQYSMDI---   67 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~~~~~~---   67 (157)
                      ||++|||||||+++|++..+...+.++.+.........  ....+.+||++|..          .+..+...+++.+   
T Consensus        30 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (196)
T PRK00454         30 AGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENL  107 (196)
T ss_pred             EcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccc
Confidence            69999999999999998776655555655333211111  12568999999943          3333444555544   


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHHHhCC
Q psy1873          68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI--SYDEGKRLAESWKA  145 (157)
Q Consensus        68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~--~~~~~~~~~~~~~~  145 (157)
                      +++++++|.+++.....  .++...+...   .             .|+++++||+|+......  .......+......
T Consensus       108 ~~~~~v~d~~~~~~~~~--~~i~~~l~~~---~-------------~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~  169 (196)
T PRK00454        108 KGVVLLIDSRHPLKELD--LQMIEWLKEY---G-------------IPVLIVLTKADKLKKGERKKQLKKVRKALKFGDD  169 (196)
T ss_pred             eEEEEEEecCCCCCHHH--HHHHHHHHHc---C-------------CcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCC
Confidence            57788888876543322  2222222221   2             889999999998653322  12223344444467


Q ss_pred             cEEEeccccCCC
Q psy1873         146 GFVEASAKQDDY  157 (157)
Q Consensus       146 ~~~e~Sa~~~~~  157 (157)
                      +++++||++|+|
T Consensus       170 ~~~~~Sa~~~~g  181 (196)
T PRK00454        170 EVILFSSLKKQG  181 (196)
T ss_pred             ceEEEEcCCCCC
Confidence            999999999976

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.80  E-value=1.3e-18  Score=129.64  Aligned_cols=143  Identities=20%  Similarity=0.163  Sum_probs=96.7

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC----chh---hhccCCCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI----FPA---QYSMDIHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~---~~~~~~~~~il   72 (157)
                      ||.||||||||+|++++.+. ...+..|+.......+..++ ...+.++|+||...-..    +..   ..+..++++++
T Consensus       165 VG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~  243 (390)
T PRK12298        165 LGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLH  243 (390)
T ss_pred             EcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEE
Confidence            69999999999999998665 34455555544444444432 23478999999753221    222   24678899999


Q ss_pred             EEECC---ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcE
Q psy1873          73 VYSIT---SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK--AGF  147 (157)
Q Consensus        73 v~d~~---~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~  147 (157)
                      |+|++   +.+.++....|+.++......            +...|++||+||+|+.....+ .+....+....+  .++
T Consensus       244 VVD~s~~~~~d~~e~~~~l~~eL~~~~~~------------L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~V  310 (390)
T PRK12298        244 LIDIAPIDGSDPVENARIIINELEKYSPK------------LAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPV  310 (390)
T ss_pred             EeccCcccccChHHHHHHHHHHHHhhhhh------------hcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCE
Confidence            99998   456677777777776654321            122899999999998654333 233445555544  478


Q ss_pred             EEeccccCCC
Q psy1873         148 VEASAKQDDY  157 (157)
Q Consensus       148 ~e~Sa~~~~~  157 (157)
                      +.+||++++|
T Consensus       311 i~ISA~tg~G  320 (390)
T PRK12298        311 YLISAASGLG  320 (390)
T ss_pred             EEEECCCCcC
Confidence            9999999976

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.80  E-value=7.4e-19  Score=138.74  Aligned_cols=133  Identities=18%  Similarity=0.278  Sum_probs=93.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCcc---ceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE---NTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSIT   77 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~   77 (157)
                      ||..++|||||+++|....+.....+++.   ..+...+..++....+.+|||||++.|..++...+..+|++|+|+|++
T Consensus       250 vGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~  329 (742)
T CHL00189        250 LGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAAD  329 (742)
T ss_pred             ECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECc
Confidence            69999999999999998776544333322   122333334445678999999999999999999999999999999998


Q ss_pred             Ch---hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHH-------HHHHhC--C
Q psy1873          78 SH---KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKR-------LAESWK--A  145 (157)
Q Consensus        78 ~~---~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~-------~~~~~~--~  145 (157)
                      +.   ++++.+.    .+    ....             +|++|++||+|+....   ..+...       +...++  +
T Consensus       330 dGv~~QT~E~I~----~~----k~~~-------------iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~v  385 (742)
T CHL00189        330 DGVKPQTIEAIN----YI----QAAN-------------VPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDT  385 (742)
T ss_pred             CCCChhhHHHHH----HH----HhcC-------------ceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCc
Confidence            74   3333332    11    1112             9999999999986432   122211       123334  6


Q ss_pred             cEEEeccccCCC
Q psy1873         146 GFVEASAKQDDY  157 (157)
Q Consensus       146 ~~~e~Sa~~~~~  157 (157)
                      +++++||++|+|
T Consensus       386 pvv~VSAktG~G  397 (742)
T CHL00189        386 PMIPISASQGTN  397 (742)
T ss_pred             eEEEEECCCCCC
Confidence            899999999986

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.79  E-value=1.5e-18  Score=138.02  Aligned_cols=134  Identities=22%  Similarity=0.256  Sum_probs=91.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|..++|||||+++|....+......++.... ...+.+++  ..+.||||||+..|..++...+..+|++|||+|.++.
T Consensus       296 mGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddG  373 (787)
T PRK05306        296 MGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDG  373 (787)
T ss_pred             ECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCC
Confidence            69999999999999988777544333332111 33444554  5688999999999999999999999999999999874


Q ss_pred             ---hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc--eecHH--HHHHHHHHhC--CcEEEe
Q psy1873          80 ---KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER--MISYD--EGKRLAESWK--AGFVEA  150 (157)
Q Consensus        80 ---~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~--~~~~~--~~~~~~~~~~--~~~~e~  150 (157)
                         ++.+.+.        ......             +|++|++||+|+....  .+...  +...++..++  ++++++
T Consensus       374 v~~qT~e~i~--------~a~~~~-------------vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpv  432 (787)
T PRK05306        374 VMPQTIEAIN--------HAKAAG-------------VPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPV  432 (787)
T ss_pred             CCHhHHHHHH--------HHHhcC-------------CcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEE
Confidence               3333321        111112             9999999999985421  11111  0111233344  689999


Q ss_pred             ccccCCC
Q psy1873         151 SAKQDDY  157 (157)
Q Consensus       151 Sa~~~~~  157 (157)
                      ||++|+|
T Consensus       433 SAktG~G  439 (787)
T PRK05306        433 SAKTGEG  439 (787)
T ss_pred             eCCCCCC
Confidence            9999987

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.79  E-value=1.5e-18  Score=131.53  Aligned_cols=132  Identities=20%  Similarity=0.134  Sum_probs=88.8

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCcc--------CcCchhhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDE--------YSIFPAQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~~~~~~   70 (157)
                      ||.+|||||||+|+|++...  ...+..++.+.....+.+++.  .+.+|||+|...        +......+++.+|++
T Consensus         5 vG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~v   82 (429)
T TIGR03594         5 VGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVI   82 (429)
T ss_pred             ECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEE
Confidence            69999999999999998764  233333333444555566664  579999999632        333455678899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEE
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVE  149 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e  149 (157)
                      ++|+|..+......  ..+..++...   .             .|+++|+||+|+......    ... ...+++ ++++
T Consensus        83 l~vvD~~~~~~~~d--~~i~~~l~~~---~-------------~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~  139 (429)
T TIGR03594        83 LFVVDGREGLTPED--EEIAKWLRKS---G-------------KPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIP  139 (429)
T ss_pred             EEEEeCCCCCCHHH--HHHHHHHHHh---C-------------CCEEEEEECccCCccccc----HHH-HHhcCCCCeEE
Confidence            99999987533322  2222222222   2             899999999998653321    122 345677 8999


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      +||++|.|
T Consensus       140 vSa~~g~g  147 (429)
T TIGR03594       140 ISAEHGRG  147 (429)
T ss_pred             EeCCcCCC
Confidence            99999976

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.78  E-value=5.3e-18  Score=135.29  Aligned_cols=135  Identities=17%  Similarity=0.178  Sum_probs=94.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc----------hhhh--ccCCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF----------PAQY--SMDIH   68 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~--~~~~~   68 (157)
                      +|++|||||||+|++++.+......+.+..+ .+...+......+.+||+||..++...          ...+  ...+|
T Consensus         9 vG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve-~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD   87 (772)
T PRK09554          9 IGNPNSGKTTLFNQLTGARQRVGNWAGVTVE-RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDAD   87 (772)
T ss_pred             ECCCCCCHHHHHHHHhCCCCccCCCCCceEe-eEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCC
Confidence            6999999999999999876532222222111 222233444567899999999877542          1123  24789


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEE
Q psy1873          69 GYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFV  148 (157)
Q Consensus        69 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  148 (157)
                      ++++|+|.++.++-   ..++.++.+.    +             .|+++++||+|+.+.+.+. .+.+.+.+.+|++++
T Consensus        88 ~vI~VvDat~ler~---l~l~~ql~e~----g-------------iPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVv  146 (772)
T PRK09554         88 LLINVVDASNLERN---LYLTLQLLEL----G-------------IPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVI  146 (772)
T ss_pred             EEEEEecCCcchhh---HHHHHHHHHc----C-------------CCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEE
Confidence            99999999886542   2344444432    2             9999999999986555553 457788899999999


Q ss_pred             EeccccCCC
Q psy1873         149 EASAKQDDY  157 (157)
Q Consensus       149 e~Sa~~~~~  157 (157)
                      ++||++|+|
T Consensus       147 piSA~~g~G  155 (772)
T PRK09554        147 PLVSTRGRG  155 (772)
T ss_pred             EEEeecCCC
Confidence            999999986

>KOG0072|consensus

Probab=99.78  E-value=4.6e-19  Score=111.87  Aligned_cols=138  Identities=16%  Similarity=0.216  Sum_probs=103.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|-.|+|||+++.++.-+... ...||++... .  .+..+...+++||.+|+-..++.|.-|+.+.+++|+|.|.+|+.
T Consensus        24 lgldGaGkttIlyrlqvgevv-ttkPtigfnv-e--~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~d   99 (182)
T KOG0072|consen   24 LGLDGAGKTTILYRLQVGEVV-TTKPTIGFNV-E--TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRD   99 (182)
T ss_pred             eeccCCCeeEEEEEcccCccc-ccCCCCCcCc-c--ccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchh
Confidence            578899999999998755544 3457777432 2  23336678899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHH-----HHHHHhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGK-----RLAESWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~e~Sa~~~  155 (157)
                      .+......+-.++....-..             ..++|++||.|......  ..++.     .-.+..-+.+|++||.+|
T Consensus       100 ris~a~~el~~mL~E~eLq~-------------a~llv~anKqD~~~~~t--~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg  164 (182)
T KOG0072|consen  100 RISIAGVELYSMLQEEELQH-------------AKLLVFANKQDYSGALT--RSEVLKMLGLQKLKDRIWQIVKTSAVKG  164 (182)
T ss_pred             hhhhhHHHHHHHhccHhhcC-------------ceEEEEeccccchhhhh--HHHHHHHhChHHHhhheeEEEeeccccc
Confidence            98888777777776655433             88999999999854322  22222     122222368999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       165 ~G  166 (182)
T KOG0072|consen  165 EG  166 (182)
T ss_pred             cC
Confidence            86

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.78  E-value=2.3e-18  Score=137.23  Aligned_cols=135  Identities=23%  Similarity=0.184  Sum_probs=91.5

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCc----------Cch-hhhccCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS----------IFP-AQYSMDI   67 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~~~-~~~~~~~   67 (157)
                      +|.+|||||||+|+|++...  ...+.+|+.+.+...+.+++..  +.+|||+|..+..          .+. ...++.+
T Consensus       456 vG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~a  533 (712)
T PRK09518        456 VGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERS  533 (712)
T ss_pred             ECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHHHHHhhcC
Confidence            69999999999999998864  3455555555556666777765  5689999964321          111 2346889


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHH-HHHHh---
Q psy1873          68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKR-LAESW---  143 (157)
Q Consensus        68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~-~~~~~---  143 (157)
                      |++++|+|.++..+.+.+. ++..+...    .             .|++||+||+|+.+...  .+.... +...+   
T Consensus       534 dvvilViDat~~~s~~~~~-i~~~~~~~----~-------------~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~  593 (712)
T PRK09518        534 ELALFLFDASQPISEQDLK-VMSMAVDA----G-------------RALVLVFNKWDLMDEFR--RQRLERLWKTEFDRV  593 (712)
T ss_pred             CEEEEEEECCCCCCHHHHH-HHHHHHHc----C-------------CCEEEEEEchhcCChhH--HHHHHHHHHHhccCC
Confidence            9999999999988877664 33333221    2             89999999999965322  111221 11221   


Q ss_pred             -CCcEEEeccccCCC
Q psy1873         144 -KAGFVEASAKQDDY  157 (157)
Q Consensus       144 -~~~~~e~Sa~~~~~  157 (157)
                       ..+.+.+||++|.|
T Consensus       594 ~~~~ii~iSAktg~g  608 (712)
T PRK09518        594 TWARRVNLSAKTGWH  608 (712)
T ss_pred             CCCCEEEEECCCCCC
Confidence             24779999999986

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.77  E-value=3.6e-18  Score=132.70  Aligned_cols=105  Identities=20%  Similarity=0.247  Sum_probs=74.2

Q ss_pred             CCCCCCChhhhHhhhhccccccc----ccCCccceEEEEEE-------------ECCeEEEEEEEeCCCCccCcCchhhh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDS----YDPTIENTFVKTTR-------------MNNQDYDLKLVDTAGQDEYSIFPAQY   63 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~----~~~t~~~~~~~~~~-------------~~~~~~~~~i~D~~g~~~~~~~~~~~   63 (157)
                      +|.+++|||||+++|++..+...    ...+++..+...-.             ++.+...+.+|||||++.|..++..+
T Consensus        10 iG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~   89 (590)
T TIGR00491        10 LGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRG   89 (590)
T ss_pred             ECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHHHHHH
Confidence            69999999999999998776433    23334432211100             01111237899999999999999999


Q ss_pred             ccCCCEEEEEEECCC---hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873          64 SMDIHGYVLVYSITS---HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH  126 (157)
Q Consensus        64 ~~~~~~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~  126 (157)
                      ++.+|++++|+|+++   +++++.+..+     ...   .             +|+++++||+|+.
T Consensus        90 ~~~aD~~IlVvD~~~g~~~qt~e~i~~l-----~~~---~-------------vpiIVv~NK~Dl~  134 (590)
T TIGR00491        90 GALADLAILIVDINEGFKPQTQEALNIL-----RMY---K-------------TPFVVAANKIDRI  134 (590)
T ss_pred             HhhCCEEEEEEECCcCCCHhHHHHHHHH-----HHc---C-------------CCEEEEEECCCcc
Confidence            999999999999997   5555554321     111   2             8999999999985

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.76  E-value=2.8e-17  Score=115.12  Aligned_cols=78  Identities=21%  Similarity=0.212  Sum_probs=55.7

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCc----C---chhhhccCCCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS----I---FPAQYSMDIHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~---~~~~~~~~~~~~il   72 (157)
                      +|++|||||||+++|.+... ...+..++.......+.+++  ..+++||+||..+..    .   .....++++|++++
T Consensus         6 vG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~   83 (233)
T cd01896           6 VGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILM   83 (233)
T ss_pred             ECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCCEEEE
Confidence            69999999999999998754 33344343333345555655  568999999975443    1   12346889999999


Q ss_pred             EEECCChh
Q psy1873          73 VYSITSHK   80 (157)
Q Consensus        73 v~d~~~~~   80 (157)
                      |+|.+++.
T Consensus        84 V~D~t~~~   91 (233)
T cd01896          84 VLDATKPE   91 (233)
T ss_pred             EecCCcch
Confidence            99998765

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.76  E-value=1.2e-17  Score=126.74  Aligned_cols=136  Identities=24%  Similarity=0.154  Sum_probs=87.7

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch-----------hhhccCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP-----------AQYSMDI   67 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----------~~~~~~~   67 (157)
                      +|.+|+|||||+++|++...  ......+..+.....+..++.  .+.+|||+|..+...+.           ...++.+
T Consensus       179 vG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~a  256 (435)
T PRK00093        179 IGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQ--KYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERA  256 (435)
T ss_pred             ECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCe--eEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHC
Confidence            69999999999999997653  233333433444444455554  46789999975443321           2357789


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH----HHh
Q psy1873          68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA----ESW  143 (157)
Q Consensus        68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~----~~~  143 (157)
                      |++|+|+|++++.+.+... ++..+..    ..             .|+++++||+|+.+.... .+....+.    ...
T Consensus       257 d~~ilViD~~~~~~~~~~~-i~~~~~~----~~-------------~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~  317 (435)
T PRK00093        257 DVVLLVIDATEGITEQDLR-IAGLALE----AG-------------RALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLD  317 (435)
T ss_pred             CEEEEEEeCCCCCCHHHHH-HHHHHHH----cC-------------CcEEEEEECccCCCHHHH-HHHHHHHHHhccccc
Confidence            9999999999887765542 2222222    12             899999999998643211 11111222    222


Q ss_pred             CCcEEEeccccCCC
Q psy1873         144 KAGFVEASAKQDDY  157 (157)
Q Consensus       144 ~~~~~e~Sa~~~~~  157 (157)
                      .++++++||++|.|
T Consensus       318 ~~~i~~~SA~~~~g  331 (435)
T PRK00093        318 YAPIVFISALTGQG  331 (435)
T ss_pred             CCCEEEEeCCCCCC
Confidence            47999999999976

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.76  E-value=1.4e-17  Score=109.45  Aligned_cols=136  Identities=18%  Similarity=0.229  Sum_probs=96.1

Q ss_pred             CCCCCCChhhhHhhhhccccccc--------cc----CCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDS--------YD----PTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIH   68 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~--------~~----~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   68 (157)
                      .|+.++||||++.++.+......        +.    .|+..+|......+  ...++++++|||++|..+|..+++++.
T Consensus        16 ~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~--~~~v~LfgtPGq~RF~fm~~~l~~ga~   93 (187)
T COG2229          16 IGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE--DTGVHLFGTPGQERFKFMWEILSRGAV   93 (187)
T ss_pred             EcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC--cceEEEecCCCcHHHHHHHHHHhCCcc
Confidence            48999999999999987664211        11    12222222221222  245789999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh--CCc
Q psy1873          69 GYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW--KAG  146 (157)
Q Consensus        69 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~  146 (157)
                      +.|++.|.+++..+ .....+..+....+                +|++|++||.||.+  ..+.++.+++.+..  .++
T Consensus        94 gaivlVDss~~~~~-~a~~ii~f~~~~~~----------------ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~  154 (187)
T COG2229          94 GAIVLVDSSRPITF-HAEEIIDFLTSRNP----------------IPVVVAINKQDLFD--ALPPEKIREALKLELLSVP  154 (187)
T ss_pred             eEEEEEecCCCcch-HHHHHHHHHhhccC----------------CCEEEEeeccccCC--CCCHHHHHHHHHhccCCCc
Confidence            99999999999988 44333333332222                89999999999965  34455555555444  789


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      .++.+|.++++
T Consensus       155 vi~~~a~e~~~  165 (187)
T COG2229         155 VIEIDATEGEG  165 (187)
T ss_pred             eeeeecccchh
Confidence            99999998764

>COG1159 Era GTPase [General function prediction only]

Probab=99.75  E-value=2.4e-17  Score=116.15  Aligned_cols=137  Identities=20%  Similarity=0.165  Sum_probs=91.5

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc--------hhhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF--------PAQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~~~~~   70 (157)
                      ||.||||||||+|++++.+.  .+....|+.......+..+  ...+.+.||||-..-...        ....+.++|++
T Consensus        12 iGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDli   89 (298)
T COG1159          12 IGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLI   89 (298)
T ss_pred             EcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEE
Confidence            69999999999999999887  3444455554444444444  467889999996554432        22357889999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEE
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK-AGFVE  149 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e  149 (157)
                      +++.|.++.-.  .-.+++.+.+..   ..             .|++++.||.|..............+..... ...++
T Consensus        90 lfvvd~~~~~~--~~d~~il~~lk~---~~-------------~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivp  151 (298)
T COG1159          90 LFVVDADEGWG--PGDEFILEQLKK---TK-------------TPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVP  151 (298)
T ss_pred             EEEEeccccCC--ccHHHHHHHHhh---cC-------------CCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEE
Confidence            99999987432  233333333333   12             8999999999986654422233333333333 38999


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      +||++|.|
T Consensus       152 iSA~~g~n  159 (298)
T COG1159         152 ISALKGDN  159 (298)
T ss_pred             eeccccCC
Confidence            99999986

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.75  E-value=9.1e-18  Score=115.46  Aligned_cols=95  Identities=21%  Similarity=0.268  Sum_probs=64.6

Q ss_pred             EEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh----hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEE
Q psy1873          43 YDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH----KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL  118 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~----~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~v  118 (157)
                      ..+.+||+||++++.......+..+|++++|+|++++    .+.+.+..    + ....  .             .|++|
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~----~-~~~~--~-------------~~iii  142 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAA----L-EIMG--L-------------KHIII  142 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHH----H-HHcC--C-------------CcEEE
Confidence            5789999999988877777777888999999999874    22332221    2 1111  1             57999


Q ss_pred             EEeCCCCCCCcee--cHHHHHHHHHHh---CCcEEEeccccCCC
Q psy1873         119 VGNKKDLHMERMI--SYDEGKRLAESW---KAGFVEASAKQDDY  157 (157)
Q Consensus       119 v~nK~Dl~~~~~~--~~~~~~~~~~~~---~~~~~e~Sa~~~~~  157 (157)
                      ++||.|+......  ..++...++...   +++++++||++|+|
T Consensus       143 vvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~g  186 (203)
T cd01888         143 VQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYN  186 (203)
T ss_pred             EEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCC
Confidence            9999998653221  112333433332   57899999999986

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.75  E-value=5.5e-18  Score=128.27  Aligned_cols=141  Identities=17%  Similarity=0.126  Sum_probs=89.3

Q ss_pred             CCCCCCChhhhHhhhhc--cccccc-----------------------------ccCCccceEEEEEEECCeEEEEEEEe
Q psy1873           1 MGYRSVGKSSLSIQFVD--GQFVDS-----------------------------YDPTIENTFVKTTRMNNQDYDLKLVD   49 (157)
Q Consensus         1 vG~~~~GKssli~~~~~--~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~~~i~D   49 (157)
                      +|..++|||||+.+|+.  +.....                             ...++.... ....+....+.+.+||
T Consensus        13 ~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~-~~~~~~~~~~~i~iiD   91 (426)
T TIGR00483        13 IGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDV-AHWKFETDKYEVTIVD   91 (426)
T ss_pred             EeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEE-EEEEEccCCeEEEEEE
Confidence            69999999999999975  211100                             001111111 1122333456789999


Q ss_pred             CCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q psy1873          50 TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME  128 (157)
Q Consensus        50 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~  128 (157)
                      ++|+++|.......+..+|++|+|+|+++.+++.... .+...+.....  .             .|++|++||+|+.+.
T Consensus        92 tpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~--~-------------~~iIVviNK~Dl~~~  156 (426)
T TIGR00483        92 CPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG--I-------------NQLIVAINKMDSVNY  156 (426)
T ss_pred             CCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC--C-------------CeEEEEEEChhccCc
Confidence            9999888665555678899999999999885432111 11112222221  1             579999999998642


Q ss_pred             ce----ecHHHHHHHHHHhC-----CcEEEeccccCCC
Q psy1873         129 RM----ISYDEGKRLAESWK-----AGFVEASAKQDDY  157 (157)
Q Consensus       129 ~~----~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~  157 (157)
                      .+    ...++...+++..+     ++++++||++|+|
T Consensus       157 ~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~n  194 (426)
T TIGR00483       157 DEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDN  194 (426)
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccc
Confidence            22    22345666777665     5799999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.75  E-value=2.1e-17  Score=129.10  Aligned_cols=137  Identities=20%  Similarity=0.181  Sum_probs=93.9

Q ss_pred             CCCCCCChhhhHhhhhccc--cc-----cccc------CCccceE-EE--EEEE---CCeEEEEEEEeCCCCccCcCchh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ--FV-----DSYD------PTIENTF-VK--TTRM---NNQDYDLKLVDTAGQDEYSIFPA   61 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~--~~-----~~~~------~t~~~~~-~~--~~~~---~~~~~~~~i~D~~g~~~~~~~~~   61 (157)
                      ||..++|||||+.+|+...  +.     ..+.      .+.+..+ ..  .+.+   +++.+.+.+|||||+.+|...+.
T Consensus        13 iGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~~~v~   92 (600)
T PRK05433         13 IAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFSYEVS   92 (600)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHHHHHH
Confidence            6999999999999998531  11     0110      1112222 11  1222   56678899999999999999899


Q ss_pred             hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873          62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE  141 (157)
Q Consensus        62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~  141 (157)
                      .++..+|++|+|+|.++....+....|.... .    ..             +|+++|+||+|+....  .......+.+
T Consensus        93 ~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~----~~-------------lpiIvViNKiDl~~a~--~~~v~~ei~~  152 (600)
T PRK05433         93 RSLAACEGALLVVDASQGVEAQTLANVYLAL-E----ND-------------LEIIPVLNKIDLPAAD--PERVKQEIED  152 (600)
T ss_pred             HHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CC-------------CCEEEEEECCCCCccc--HHHHHHHHHH
Confidence            9999999999999999876655554443221 1    12             8999999999985432  1222344555


Q ss_pred             HhCCc---EEEeccccCCC
Q psy1873         142 SWKAG---FVEASAKQDDY  157 (157)
Q Consensus       142 ~~~~~---~~e~Sa~~~~~  157 (157)
                      .+++.   ++++||++|+|
T Consensus       153 ~lg~~~~~vi~iSAktG~G  171 (600)
T PRK05433        153 VIGIDASDAVLVSAKTGIG  171 (600)
T ss_pred             HhCCCcceEEEEecCCCCC
Confidence            56664   89999999986

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.75  E-value=1.7e-17  Score=125.55  Aligned_cols=141  Identities=16%  Similarity=0.112  Sum_probs=87.1

Q ss_pred             CCCCCCChhhhHhhhhcccc--cc-----------------------------cccCCccceEEEEEEECCeEEEEEEEe
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VD-----------------------------SYDPTIENTFVKTTRMNNQDYDLKLVD   49 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~~i~D   49 (157)
                      +|.+++|||||+++|+...-  ..                             +....+... .....++...+.+.+||
T Consensus        12 iGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d-~~~~~~~~~~~~i~liD   90 (425)
T PRK12317         12 IGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTID-LAHKKFETDKYYFTIVD   90 (425)
T ss_pred             ECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccce-eeeEEEecCCeEEEEEE
Confidence            69999999999999983211  00                             001111101 11122333457789999


Q ss_pred             CCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc
Q psy1873          50 TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER  129 (157)
Q Consensus        50 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~  129 (157)
                      +||+++|.......+..+|++|+|+|.+++.++.....++..+.....  .             .|++|++||+|+....
T Consensus        91 tpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~--~-------------~~iivviNK~Dl~~~~  155 (425)
T PRK12317         91 CPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG--I-------------NQLIVAINKMDAVNYD  155 (425)
T ss_pred             CCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC--C-------------CeEEEEEEcccccccc
Confidence            999988866544556889999999999874233222222223332221  1             4699999999986421


Q ss_pred             e----ecHHHHHHHHHHhC-----CcEEEeccccCCC
Q psy1873         130 M----ISYDEGKRLAESWK-----AGFVEASAKQDDY  157 (157)
Q Consensus       130 ~----~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~  157 (157)
                      .    ...++...++...+     ++++++||++|+|
T Consensus       156 ~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~g  192 (425)
T PRK12317        156 EKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDN  192 (425)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCC
Confidence            1    12344555665555     4799999999986

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.74  E-value=1.9e-17  Score=114.27  Aligned_cols=99  Identities=17%  Similarity=0.116  Sum_probs=64.8

Q ss_pred             EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN  121 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n  121 (157)
                      ...+.+|||||+.+|.......+..+|++|+|+|.++...-+ .... ..+.....  .             .++++|+|
T Consensus        76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~-~~~~~~~~--~-------------~~iIvviN  138 (208)
T cd04166          76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRH-SYILSLLG--I-------------RHVVVAVN  138 (208)
T ss_pred             CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHH-HHHHHHcC--C-------------CcEEEEEE
Confidence            346789999999887665566788999999999998753211 1111 12222221  0             45788999


Q ss_pred             CCCCCCCce----ecHHHHHHHHHHhCC---cEEEeccccCCC
Q psy1873         122 KKDLHMERM----ISYDEGKRLAESWKA---GFVEASAKQDDY  157 (157)
Q Consensus       122 K~Dl~~~~~----~~~~~~~~~~~~~~~---~~~e~Sa~~~~~  157 (157)
                      |+|+.....    ....+...+...+++   +++.+||++|+|
T Consensus       139 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~n  181 (208)
T cd04166         139 KMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDN  181 (208)
T ss_pred             chhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCC
Confidence            999854221    112345555666664   589999999986

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.74  E-value=4.1e-17  Score=130.17  Aligned_cols=132  Identities=20%  Similarity=0.155  Sum_probs=82.2

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccC--------cCchhhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEY--------SIFPAQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~~~~~~~~   70 (157)
                      +|.+|||||||+|+|++.... ....+++. +........++  ..+.+|||+|....        ......++..+|++
T Consensus       281 vG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~i  358 (712)
T PRK09518        281 VGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAV  358 (712)
T ss_pred             ECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEE
Confidence            699999999999999987541 12223222 22233344445  45788999997642        12234567899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEE
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVE  149 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e  149 (157)
                      |+|+|.++.  +......+...+..   ..             .|+++|+||+|+....   ......+  .++. ..++
T Consensus       359 L~VvDa~~~--~~~~d~~i~~~Lr~---~~-------------~pvIlV~NK~D~~~~~---~~~~~~~--~lg~~~~~~  415 (712)
T PRK09518        359 VFVVDGQVG--LTSTDERIVRMLRR---AG-------------KPVVLAVNKIDDQASE---YDAAEFW--KLGLGEPYP  415 (712)
T ss_pred             EEEEECCCC--CCHHHHHHHHHHHh---cC-------------CCEEEEEECcccccch---hhHHHHH--HcCCCCeEE
Confidence            999999763  22222222222222   12             9999999999985421   1112222  2343 4679


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      +||++|.|
T Consensus       416 iSA~~g~G  423 (712)
T PRK09518        416 ISAMHGRG  423 (712)
T ss_pred             EECCCCCC
Confidence            99999986

>KOG1707|consensus

Probab=99.73  E-value=6.9e-18  Score=127.39  Aligned_cols=145  Identities=19%  Similarity=0.246  Sum_probs=107.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|+.||||||||..++...|++.-.+-. ..+.....+....+...|.|++....-+......++.+|+++++|++++++
T Consensus        15 iGD~G~GKtSLImSL~~eef~~~VP~rl-~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~   93 (625)
T KOG1707|consen   15 IGDEGVGKTSLIMSLLEEEFVDAVPRRL-PRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDES   93 (625)
T ss_pred             ECCCCccHHHHHHHHHhhhccccccccC-CccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChH
Confidence            6999999999999999998876654333 333222445555566899999877776667788889999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHH-HHHHHHHhC-C-cEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDE-GKRLAESWK-A-GFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~-~~~e~Sa~~~~~  157 (157)
                      +++.+...|..+.+.....           ...+|+|+||||+|.......+.+. ...+..++. + .++||||++..|
T Consensus        94 T~D~ist~WLPlir~~~~~-----------~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n  162 (625)
T KOG1707|consen   94 TVDRISTKWLPLIRQLFGD-----------YHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN  162 (625)
T ss_pred             HhhhhhhhhhhhhhcccCC-----------CccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence            9999976666666555432           2349999999999986654443333 445555554 4 799999998653

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.71  E-value=6.9e-17  Score=107.13  Aligned_cols=134  Identities=19%  Similarity=0.199  Sum_probs=82.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCcc----------CcCchhhhccC---
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDE----------YSIFPAQYSMD---   66 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~~---   66 (157)
                      +|++|+|||||+++++++.+.....++.+... ......++   .+.+||++|...          +..+...++..   
T Consensus         5 ~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (170)
T cd01876           5 AGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENREN   81 (170)
T ss_pred             EcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChh
Confidence            69999999999999997666555555555332 22223332   678999998433          33444445543   


Q ss_pred             CCEEEEEEECCChhh--HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec--HHHHHHHHH-
Q psy1873          67 IHGYVLVYSITSHKS--FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS--YDEGKRLAE-  141 (157)
Q Consensus        67 ~~~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~--~~~~~~~~~-  141 (157)
                      .+++++++|.++..+  ...+..|+..    .   .             .|+++++||+|+.......  ........+ 
T Consensus        82 ~~~~~~v~d~~~~~~~~~~~~~~~l~~----~---~-------------~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~  141 (170)
T cd01876          82 LKGVVLLIDSRHGPTEIDLEMLDWLEE----L---G-------------IPFLVVLTKADKLKKSELAKALKEIKKELKL  141 (170)
T ss_pred             hhEEEEEEEcCcCCCHhHHHHHHHHHH----c---C-------------CCEEEEEEchhcCChHHHHHHHHHHHHHHHh
Confidence            467888988876532  2223333322    1   1             8899999999985432211  112222222 


Q ss_pred             -HhCCcEEEeccccCCC
Q psy1873         142 -SWKAGFVEASAKQDDY  157 (157)
Q Consensus       142 -~~~~~~~e~Sa~~~~~  157 (157)
                       ....+++++||+++.|
T Consensus       142 ~~~~~~~~~~Sa~~~~~  158 (170)
T cd01876         142 FEIDPPIILFSSLKGQG  158 (170)
T ss_pred             ccCCCceEEEecCCCCC
Confidence             2345899999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK10218 GTP-binding protein; Provisional

Probab=99.70  E-value=2.9e-16  Score=122.52  Aligned_cols=138  Identities=20%  Similarity=0.166  Sum_probs=93.8

Q ss_pred             CCCCCCChhhhHhhhhc--ccccccc------------cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVD--GQFVDSY------------DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM   65 (157)
Q Consensus         1 vG~~~~GKssli~~~~~--~~~~~~~------------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   65 (157)
                      +|..++|||||+.+|+.  +.+....            ..+.+..+ .....+....+.+.+||++|+.+|...+..+++
T Consensus        11 iGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~   90 (607)
T PRK10218         11 IAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMS   90 (607)
T ss_pred             ECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHH
Confidence            69999999999999986  3332211            12233333 344455556688999999999999999999999


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHH---
Q psy1873          66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM-ISYDEGKRLAE---  141 (157)
Q Consensus        66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~-~~~~~~~~~~~---  141 (157)
                      .+|++|+|+|.++.... ....++..+...    .             +|.++++||+|+...+. -..++...+..   
T Consensus        91 ~aDg~ILVVDa~~G~~~-qt~~~l~~a~~~----g-------------ip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~  152 (607)
T PRK10218         91 MVDSVLLVVDAFDGPMP-QTRFVTKKAFAY----G-------------LKPIVVINKVDRPGARPDWVVDQVFDLFVNLD  152 (607)
T ss_pred             hCCEEEEEEecccCccH-HHHHHHHHHHHc----C-------------CCEEEEEECcCCCCCchhHHHHHHHHHHhccC
Confidence            99999999999875332 233344443332    2             88999999999864322 11223333321   


Q ss_pred             ----HhCCcEEEeccccCC
Q psy1873         142 ----SWKAGFVEASAKQDD  156 (157)
Q Consensus       142 ----~~~~~~~e~Sa~~~~  156 (157)
                          ...+|++.+||++|.
T Consensus       153 ~~~~~~~~PVi~~SA~~G~  171 (607)
T PRK10218        153 ATDEQLDFPIVYASALNGI  171 (607)
T ss_pred             ccccccCCCEEEeEhhcCc
Confidence                234789999999986

>cd04167 Snu114p Snu114p subfamily

Probab=99.70  E-value=1.1e-16  Score=110.96  Aligned_cols=108  Identities=22%  Similarity=0.196  Sum_probs=74.2

Q ss_pred             CCCCCCChhhhHhhhhccccccc-----------ccCC------ccceE---EEEEEE---CCeEEEEEEEeCCCCccCc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDS-----------YDPT------IENTF---VKTTRM---NNQDYDLKLVDTAGQDEYS   57 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~-----------~~~t------~~~~~---~~~~~~---~~~~~~~~i~D~~g~~~~~   57 (157)
                      +|+.++|||||+.+|+.......           +..+      .+..+   ...+..   ++..+.+.+||++|+.+|.
T Consensus         6 iG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f~   85 (213)
T cd04167           6 AGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNFM   85 (213)
T ss_pred             EcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCCcchH
Confidence            69999999999999986543211           1111      11111   111111   3557889999999999998


Q ss_pred             CchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873          58 IFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH  126 (157)
Q Consensus        58 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~  126 (157)
                      .....++..+|++++|+|.++..+... ..++.....    ..             .|+++++||+|+.
T Consensus        86 ~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~-------------~p~iiviNK~D~~  136 (213)
T cd04167          86 DEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EG-------------LPIVLVINKIDRL  136 (213)
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cC-------------CCEEEEEECcccC
Confidence            888888999999999999988766532 233333221    12             8999999999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.70  E-value=2.8e-16  Score=116.73  Aligned_cols=131  Identities=24%  Similarity=0.245  Sum_probs=93.9

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch--------hhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP--------AQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~~~~~~~   70 (157)
                      +|.||||||||+|.|++...  +.....|+++.....+.++|  +.+++.||+|-.......        ...++.+|.+
T Consensus       223 iG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlv  300 (454)
T COG0486         223 IGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLV  300 (454)
T ss_pred             ECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEE
Confidence            69999999999999998766  45666777787788889988  667899999976655432        3457889999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA  150 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  150 (157)
                      ++++|.+.+.+-+...     +.......              .|+++|.||.|+.........     ....+.+++.+
T Consensus       301 L~v~D~~~~~~~~d~~-----~~~~~~~~--------------~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~i  356 (454)
T COG0486         301 LFVLDASQPLDKEDLA-----LIELLPKK--------------KPIIVVLNKADLVSKIELESE-----KLANGDAIISI  356 (454)
T ss_pred             EEEEeCCCCCchhhHH-----HHHhcccC--------------CCEEEEEechhcccccccchh-----hccCCCceEEE
Confidence            9999999862222111     11112111              899999999999764432111     22234579999


Q ss_pred             ccccCCC
Q psy1873         151 SAKQDDY  157 (157)
Q Consensus       151 Sa~~~~~  157 (157)
                      ||++|+|
T Consensus       357 Sa~t~~G  363 (454)
T COG0486         357 SAKTGEG  363 (454)
T ss_pred             EecCccC
Confidence            9999986

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.70  E-value=2.3e-16  Score=123.51  Aligned_cols=134  Identities=18%  Similarity=0.180  Sum_probs=86.4

Q ss_pred             CCCCCCChhhhHhhhhcc---cccccc--cCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDG---QFVDSY--DPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYS   75 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~---~~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d   75 (157)
                      +|..++|||||+++|.+.   .+..+.  -.|+...|......++  ..+.+||+||+++|.......+.++|++++|+|
T Consensus         6 ~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVd   83 (614)
T PRK10512          6 AGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVA   83 (614)
T ss_pred             ECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEE
Confidence            599999999999999853   222222  2222222221111233  347899999999987666666889999999999


Q ss_pred             CCC---hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCcee--cHHHHHHHHHHhC---Cc
Q psy1873          76 ITS---HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERMI--SYDEGKRLAESWK---AG  146 (157)
Q Consensus        76 ~~~---~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~~--~~~~~~~~~~~~~---~~  146 (157)
                      .++   +.+.+.+.     ++....                +| ++||+||+|+.+...+  ..++...+....+   ++
T Consensus        84 a~eg~~~qT~ehl~-----il~~lg----------------i~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~  142 (614)
T PRK10512         84 CDDGVMAQTREHLA-----ILQLTG----------------NPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAK  142 (614)
T ss_pred             CCCCCcHHHHHHHH-----HHHHcC----------------CCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            887   33333332     222221                44 6799999998653222  1234455555444   68


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      ++++||++|+|
T Consensus       143 ii~VSA~tG~g  153 (614)
T PRK10512        143 LFVTAATEGRG  153 (614)
T ss_pred             EEEEeCCCCCC
Confidence            99999999986

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.70  E-value=1.2e-16  Score=124.60  Aligned_cols=138  Identities=20%  Similarity=0.188  Sum_probs=93.6

Q ss_pred             CCCCCCChhhhHhhhhcc--cccccc------------cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG--QFVDSY------------DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM   65 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~--~~~~~~------------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   65 (157)
                      ||..++|||||+.+|+..  .+....            ....+.+. .....+....+.+.+|||||+.+|......+++
T Consensus         7 iGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~   86 (594)
T TIGR01394         7 IAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLG   86 (594)
T ss_pred             EcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHH
Confidence            699999999999999852  221111            01112222 233334445578899999999999988899999


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee-cHHHHHHHH----
Q psy1873          66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI-SYDEGKRLA----  140 (157)
Q Consensus        66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~-~~~~~~~~~----  140 (157)
                      .+|++++|+|.++. ...+...|+..+....                 +|++|++||+|+...+.. ..++...+.    
T Consensus        87 ~aD~alLVVDa~~G-~~~qT~~~l~~a~~~~-----------------ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g  148 (594)
T TIGR01394        87 MVDGVLLLVDASEG-PMPQTRFVLKKALELG-----------------LKPIVVINKIDRPSARPDEVVDEVFDLFAELG  148 (594)
T ss_pred             hCCEEEEEEeCCCC-CcHHHHHHHHHHHHCC-----------------CCEEEEEECCCCCCcCHHHHHHHHHHHHHhhc
Confidence            99999999999864 3344556666655432                 899999999998653321 123333333    


Q ss_pred             ---HHhCCcEEEeccccCC
Q psy1873         141 ---ESWKAGFVEASAKQDD  156 (157)
Q Consensus       141 ---~~~~~~~~e~Sa~~~~  156 (157)
                         ++..++++.+||++|.
T Consensus       149 ~~~e~l~~pvl~~SA~~g~  167 (594)
T TIGR01394       149 ADDEQLDFPIVYASGRAGW  167 (594)
T ss_pred             cccccccCcEEechhhcCc
Confidence               2235789999999984

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.69  E-value=2.7e-16  Score=122.55  Aligned_cols=105  Identities=21%  Similarity=0.240  Sum_probs=72.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccc----cCCccceEEEEEEE---CCeEE----------EEEEEeCCCCccCcCchhhh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSY----DPTIENTFVKTTRM---NNQDY----------DLKLVDTAGQDEYSIFPAQY   63 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~----~~t~~~~~~~~~~~---~~~~~----------~~~i~D~~g~~~~~~~~~~~   63 (157)
                      +|.+++|||||++++.+..+....    ..+++..+......   .+...          .+.+|||||++.|..++...
T Consensus        12 ~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~   91 (586)
T PRK04004         12 LGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRG   91 (586)
T ss_pred             ECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHHHHHHh
Confidence            699999999999999865443222    22344322111000   01111          16899999999999998888


Q ss_pred             ccCCCEEEEEEECCC---hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873          64 SMDIHGYVLVYSITS---HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH  126 (157)
Q Consensus        64 ~~~~~~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~  126 (157)
                      +..+|++++|+|.++   +++++.+..+     ..   ..             +|+++++||+|+.
T Consensus        92 ~~~aD~~IlVvDa~~g~~~qt~e~i~~~-----~~---~~-------------vpiIvviNK~D~~  136 (586)
T PRK04004         92 GALADIAILVVDINEGFQPQTIEAINIL-----KR---RK-------------TPFVVAANKIDRI  136 (586)
T ss_pred             HhhCCEEEEEEECCCCCCHhHHHHHHHH-----HH---cC-------------CCEEEEEECcCCc
Confidence            899999999999997   6666555321     11   12             8999999999984

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.67  E-value=4.7e-16  Score=108.14  Aligned_cols=101  Identities=17%  Similarity=0.115  Sum_probs=64.2

Q ss_pred             eEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhh---HH---HHHHHHHHHHHHhccccCCCCCCCCCCCCCC
Q psy1873          41 QDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKS---FE---VVQILYDKLLDMTGKIQNSSVKSPTSCVSSV  114 (157)
Q Consensus        41 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  114 (157)
                      ....+.+||++|+..|.......+..+|++|+|+|.++...   |.   .....+. +.....  .             .
T Consensus        75 ~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~~--~-------------~  138 (219)
T cd01883          75 EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTLG--V-------------K  138 (219)
T ss_pred             CCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHcC--C-------------C
Confidence            44678999999998777666666788999999999998521   11   1222222 222111  1             6


Q ss_pred             cEEEEEeCCCCCCC--ce----ecHHHHHHHHHHhC-----CcEEEeccccCCC
Q psy1873         115 PIVLVGNKKDLHME--RM----ISYDEGKRLAESWK-----AGFVEASAKQDDY  157 (157)
Q Consensus       115 p~~vv~nK~Dl~~~--~~----~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~  157 (157)
                      |+++++||.|+...  ..    ...++...+....+     ++++.+||++|+|
T Consensus       139 ~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~g  192 (219)
T cd01883         139 QLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDN  192 (219)
T ss_pred             eEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCC
Confidence            89999999998632  11    11122333334443     5799999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.67  E-value=8.7e-16  Score=113.84  Aligned_cols=132  Identities=20%  Similarity=0.133  Sum_probs=92.6

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCc--Cc-------hhhhccCCCE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS--IF-------PAQYSMDIHG   69 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~-------~~~~~~~~~~   69 (157)
                      ||.||||||||+|||++.+.  ...+..++.+..+....+.+..  +.+.||+|-+...  .+       ....+..+|+
T Consensus         9 VGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADv   86 (444)
T COG1160           9 VGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAIEEADV   86 (444)
T ss_pred             ECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCE
Confidence            69999999999999998876  3455555566667777777755  7899999976433  22       2345788999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEE
Q psy1873          70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFV  148 (157)
Q Consensus        70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~  148 (157)
                      +|||+|....  +...++.+.+++....                .|+++|+||+|-..     .++.....-++|+ ..+
T Consensus        87 ilfvVD~~~G--it~~D~~ia~~Lr~~~----------------kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~  143 (444)
T COG1160          87 ILFVVDGREG--ITPADEEIAKILRRSK----------------KPVILVVNKIDNLK-----AEELAYEFYSLGFGEPV  143 (444)
T ss_pred             EEEEEeCCCC--CCHHHHHHHHHHHhcC----------------CCEEEEEEcccCch-----hhhhHHHHHhcCCCCce
Confidence            9999998653  2223333444444222                99999999999642     2333333445676 789


Q ss_pred             EeccccCCC
Q psy1873         149 EASAKQDDY  157 (157)
Q Consensus       149 e~Sa~~~~~  157 (157)
                      .+||..|.|
T Consensus       144 ~ISA~Hg~G  152 (444)
T COG1160         144 PISAEHGRG  152 (444)
T ss_pred             EeehhhccC
Confidence            999988875

>cd01850 CDC_Septin CDC/Septin

Probab=99.67  E-value=1.2e-15  Score=109.27  Aligned_cols=134  Identities=19%  Similarity=0.181  Sum_probs=82.8

Q ss_pred             CCCCCCChhhhHhhhhccccccc----------ccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCc------------
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDS----------YDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYS------------   57 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~----------~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~------------   57 (157)
                      +|.+|+|||||+|+|++..+...          ..+|+. ..+...+..++..+.+.+|||+|.....            
T Consensus        10 vG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~y   89 (276)
T cd01850          10 VGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDY   89 (276)
T ss_pred             EcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHH
Confidence            69999999999999998876433          234443 2335555667888899999999943221            


Q ss_pred             --------------CchhhhccCC--CEEEEEEECCChhhHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEE
Q psy1873          58 --------------IFPAQYSMDI--HGYVLVYSITSHKSFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG  120 (157)
Q Consensus        58 --------------~~~~~~~~~~--~~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~  120 (157)
                                    ..+...+.+.  ++++++++.+. ..+... ...+..+.    . .             +|+++|+
T Consensus        90 i~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~----~-~-------------v~vi~Vi  150 (276)
T cd01850          90 IDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLS----K-R-------------VNIIPVI  150 (276)
T ss_pred             HHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHh----c-c-------------CCEEEEE
Confidence                          1122344444  44555555443 223222 22222222    1 2             8999999


Q ss_pred             eCCCCCC--CceecHHHHHHHHHHhCCcEEEeccc
Q psy1873         121 NKKDLHM--ERMISYDEGKRLAESWKAGFVEASAK  153 (157)
Q Consensus       121 nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~e~Sa~  153 (157)
                      ||+|+..  +........++.+..+++++|.....
T Consensus       151 nK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         151 AKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPED  185 (276)
T ss_pred             ECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence            9999854  22334555777788888888866543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.66  E-value=1.6e-15  Score=106.54  Aligned_cols=124  Identities=17%  Similarity=0.175  Sum_probs=80.7

Q ss_pred             CCCCCCChhhhHhhhhcccc--------cccc-----c---CCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--------VDSY-----D---PTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQY   63 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--------~~~~-----~---~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   63 (157)
                      +|..|+|||||+++|+...-        ....     .   ...+..+ .....+......+.+||+||+.+|......+
T Consensus         5 ~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~   84 (237)
T cd04168           5 LAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERS   84 (237)
T ss_pred             EcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHH
Confidence            69999999999999975311        0000     0   0111111 2223334455788999999999998888889


Q ss_pred             ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh
Q psy1873          64 SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW  143 (157)
Q Consensus        64 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~  143 (157)
                      ++.+|++++|+|.++.... ....++..+...    .             +|+++++||+|+.....  ......+...+
T Consensus        85 l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~----~-------------~P~iivvNK~D~~~a~~--~~~~~~i~~~~  144 (237)
T cd04168          85 LSVLDGAILVISAVEGVQA-QTRILWRLLRKL----N-------------IPTIIFVNKIDRAGADL--EKVYQEIKEKL  144 (237)
T ss_pred             HHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc----C-------------CCEEEEEECccccCCCH--HHHHHHHHHHH
Confidence            9999999999999986543 334444444322    2             89999999999864321  23334444445


Q ss_pred             C
Q psy1873         144 K  144 (157)
Q Consensus       144 ~  144 (157)
                      +
T Consensus       145 ~  145 (237)
T cd04168         145 S  145 (237)
T ss_pred             C
Confidence            5

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG1489|consensus

Probab=99.66  E-value=2.7e-15  Score=106.43  Aligned_cols=141  Identities=20%  Similarity=0.257  Sum_probs=98.6

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCc----cCcCchhhhcc---CCCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD----EYSIFPAQYSM---DIHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~---~~~~~il   72 (157)
                      ||-||+|||||++.+...+. +..|..|+-......+.+++.. .+.+-|+||--    .-+.+...|++   .|+.+++
T Consensus       202 VG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~f  280 (366)
T KOG1489|consen  202 VGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLF  280 (366)
T ss_pred             ecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhceEEE
Confidence            79999999999999998766 5566666553333344444443 38899999853    33345445544   5789999


Q ss_pred             EEECCCh---hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-EE
Q psy1873          73 VYSITSH---KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAG-FV  148 (157)
Q Consensus        73 v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~  148 (157)
                      |.|++..   +.+++++..+.++..+...            +...|.+||+||+|+++. +  ......+++.+.-+ ++
T Consensus       281 VvD~s~~~~~~p~~~~~lL~~ELe~yek~------------L~~rp~liVaNKiD~~ea-e--~~~l~~L~~~lq~~~V~  345 (366)
T KOG1489|consen  281 VVDLSGKQLRNPWQQLQLLIEELELYEKG------------LADRPALIVANKIDLPEA-E--KNLLSSLAKRLQNPHVV  345 (366)
T ss_pred             EEECCCcccCCHHHHHHHHHHHHHHHhhh------------hccCceEEEEeccCchhH-H--HHHHHHHHHHcCCCcEE
Confidence            9999988   7778777766666544432            334899999999998532 1  12235666666654 99


Q ss_pred             EeccccCCC
Q psy1873         149 EASAKQDDY  157 (157)
Q Consensus       149 e~Sa~~~~~  157 (157)
                      ++||++++|
T Consensus       346 pvsA~~~eg  354 (366)
T KOG1489|consen  346 PVSAKSGEG  354 (366)
T ss_pred             Eeeeccccc
Confidence            999999986

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.66  E-value=2e-16  Score=107.58  Aligned_cols=138  Identities=20%  Similarity=0.188  Sum_probs=86.3

Q ss_pred             CCCCCCChhhhHhhhhccccccc--------------------ccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDS--------------------YDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP   60 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~--------------------~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   60 (157)
                      +|+.++|||||+.+|+...-...                    ..-|+. .....+..+.....+.++|+||+..|....
T Consensus         9 ~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~-~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~   87 (188)
T PF00009_consen    9 IGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITID-LSFISFEKNENNRKITLIDTPGHEDFIKEM   87 (188)
T ss_dssp             EESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSS-SEEEEEEBTESSEEEEEEEESSSHHHHHHH
T ss_pred             ECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccc-cccccccccccccceeecccccccceeecc
Confidence            59999999999999985332100                    011111 112222212445678999999999988877


Q ss_pred             hhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce-ecHHHHH-H
Q psy1873          61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM-ISYDEGK-R  138 (157)
Q Consensus        61 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~-~~~~~~~-~  138 (157)
                      ...+..+|++|+|.|..+.-..+ ..+.+..+....                 +|++|+.||+|+...+. ...++.. .
T Consensus        88 ~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~~-----------------~p~ivvlNK~D~~~~~~~~~~~~~~~~  149 (188)
T PF00009_consen   88 IRGLRQADIAILVVDANDGIQPQ-TEEHLKILRELG-----------------IPIIVVLNKMDLIEKELEEIIEEIKEK  149 (188)
T ss_dssp             HHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHTT------------------SEEEEEETCTSSHHHHHHHHHHHHHH
T ss_pred             cceecccccceeeeecccccccc-cccccccccccc-----------------cceEEeeeeccchhhhHHHHHHHHHHH
Confidence            77899999999999998764322 222223332222                 89999999999862211 1111122 3


Q ss_pred             HHHHhC------CcEEEeccccCCC
Q psy1873         139 LAESWK------AGFVEASAKQDDY  157 (157)
Q Consensus       139 ~~~~~~------~~~~e~Sa~~~~~  157 (157)
                      +.+..+      ++++.+||++|.|
T Consensus       150 l~~~~~~~~~~~~~vi~~Sa~~g~g  174 (188)
T PF00009_consen  150 LLKEYGENGEEIVPVIPISALTGDG  174 (188)
T ss_dssp             HHHHTTSTTTSTEEEEEEBTTTTBT
T ss_pred             hccccccCccccceEEEEecCCCCC
Confidence            433332      4799999999986

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.65  E-value=5.2e-15  Score=109.77  Aligned_cols=137  Identities=24%  Similarity=0.165  Sum_probs=95.0

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc-----------hhhhccCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF-----------PAQYSMDI   67 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~~~~~~~   67 (157)
                      ||.||||||||+|++++...  ......|+.+.....+..+++.+  .+.||+|..+-...           ....+..+
T Consensus       184 iGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~--~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a  261 (444)
T COG1160         184 IGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKY--VLIDTAGIRRKGKITESVEKYSVARTLKAIERA  261 (444)
T ss_pred             EeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEE--EEEECCCCCcccccccceEEEeehhhHhHHhhc
Confidence            69999999999999998765  34455566677788888888765  77999995433322           22346778


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH----HHh
Q psy1873          68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA----ESW  143 (157)
Q Consensus        68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~----~~~  143 (157)
                      ++++++.|.+.+-+-+..+     +........             .+++|+.||+|+.+.+....++.++-.    ...
T Consensus       262 ~vvllviDa~~~~~~qD~~-----ia~~i~~~g-------------~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l  323 (444)
T COG1160         262 DVVLLVIDATEGISEQDLR-----IAGLIEEAG-------------RGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFL  323 (444)
T ss_pred             CEEEEEEECCCCchHHHHH-----HHHHHHHcC-------------CCeEEEEEccccCCchhhHHHHHHHHHHHHhccc
Confidence            9999999999887655443     222222222             889999999998765433334432222    222


Q ss_pred             -CCcEEEeccccCCC
Q psy1873         144 -KAGFVEASAKQDDY  157 (157)
Q Consensus       144 -~~~~~e~Sa~~~~~  157 (157)
                       .++.+.+||++|.+
T Consensus       324 ~~a~i~~iSA~~~~~  338 (444)
T COG1160         324 DFAPIVFISALTGQG  338 (444)
T ss_pred             cCCeEEEEEecCCCC
Confidence             26999999999864

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.65  E-value=2.9e-15  Score=102.31  Aligned_cols=139  Identities=21%  Similarity=0.181  Sum_probs=85.4

Q ss_pred             CCCCCCChhhhHhhhhccccc------cccc--------CCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV------DSYD--------PTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM   65 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~------~~~~--------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   65 (157)
                      +|..++|||||+++|+.....      ..+.        ...+... ...+.+......+.+.||||+..|.......+.
T Consensus         8 iGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~   87 (195)
T cd01884           8 IGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNMITGAA   87 (195)
T ss_pred             ECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhh
Confidence            699999999999999853100      0000        0111111 122233334456789999999887766666778


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCcee---cHHHHHHHHH
Q psy1873          66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERMI---SYDEGKRLAE  141 (157)
Q Consensus        66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~~---~~~~~~~~~~  141 (157)
                      .+|++++|+|.+..-.- .....+..+. ...                +| ++++.||.|+......   ..++...+..
T Consensus        88 ~~D~~ilVvda~~g~~~-~~~~~~~~~~-~~~----------------~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~  149 (195)
T cd01884          88 QMDGAILVVSATDGPMP-QTREHLLLAR-QVG----------------VPYIVVFLNKADMVDDEELLELVEMEVRELLS  149 (195)
T ss_pred             hCCEEEEEEECCCCCcH-HHHHHHHHHH-HcC----------------CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHH
Confidence            89999999998864221 1222222222 221                65 7899999998532221   2234555555


Q ss_pred             HhC-----CcEEEeccccCCC
Q psy1873         142 SWK-----AGFVEASAKQDDY  157 (157)
Q Consensus       142 ~~~-----~~~~e~Sa~~~~~  157 (157)
                      ..+     ++++.+||++|.|
T Consensus       150 ~~g~~~~~v~iipiSa~~g~n  170 (195)
T cd01884         150 KYGFDGDNTPIVRGSALKALE  170 (195)
T ss_pred             HhcccccCCeEEEeeCccccC
Confidence            443     6899999999986

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.65  E-value=6.3e-16  Score=116.35  Aligned_cols=100  Identities=22%  Similarity=0.224  Sum_probs=66.6

Q ss_pred             EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN  121 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n  121 (157)
                      ...+.+||+||+++|...+......+|++++|+|.++.....+..+.+..+ .... .              .|++|++|
T Consensus        79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g-i--------------~~iIVvvN  142 (406)
T TIGR03680        79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG-I--------------KNIVIVQN  142 (406)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcC-C--------------CeEEEEEE
Confidence            357899999999999877777778899999999999643111222222222 2221 1              56899999


Q ss_pred             CCCCCCCcee--cHHHHHHHHHHh---CCcEEEeccccCCC
Q psy1873         122 KKDLHMERMI--SYDEGKRLAESW---KAGFVEASAKQDDY  157 (157)
Q Consensus       122 K~Dl~~~~~~--~~~~~~~~~~~~---~~~~~e~Sa~~~~~  157 (157)
                      |+|+.+....  ..++...+....   +++++++||++|+|
T Consensus       143 K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~g  183 (406)
T TIGR03680       143 KIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNAN  183 (406)
T ss_pred             ccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCC
Confidence            9998653221  123344444433   57899999999987

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.64  E-value=2.6e-16  Score=105.22  Aligned_cols=114  Identities=25%  Similarity=0.364  Sum_probs=74.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEE-CCeEEEEEEEeCCCCccCcCchhh---hccCCCEEEEEEEC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRM-NNQDYDLKLVDTAGQDEYSIFPAQ---YSMDIHGYVLVYSI   76 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~~~~ilv~d~   76 (157)
                      +|++|+|||+|+.+|..+.......+. ....  ...+ +...-.+.+.|+||+++.+.....   +...+.++|+|.|.
T Consensus         9 ~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~--~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDS   85 (181)
T PF09439_consen    9 VGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI--AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDS   85 (181)
T ss_dssp             E-STTSSHHHHHHHHHHSS---B---S-SEEE--ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEET
T ss_pred             EcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc--eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeC
Confidence            699999999999999998655444333 2211  1112 223446789999999998864333   47789999999999


Q ss_pred             C-ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q psy1873          77 T-SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME  128 (157)
Q Consensus        77 ~-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~  128 (157)
                      + .+.++.++.+++-.++.......           ..+|++|++||+|+...
T Consensus        86 s~~~~~~~~~Ae~Ly~iL~~~~~~~-----------~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   86 STDQKELRDVAEYLYDILSDTEVQK-----------NKPPILIACNKQDLFTA  127 (181)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHCCT-----------T--EEEEEEE-TTSTT-
T ss_pred             ccchhhHHHHHHHHHHHHHhhhhcc-----------CCCCEEEEEeCcccccc
Confidence            7 45667777777777776655221           23999999999998653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd04169 RF3 RF3 subfamily

Probab=99.63  E-value=8.3e-15  Score=104.53  Aligned_cols=109  Identities=16%  Similarity=0.177  Sum_probs=72.1

Q ss_pred             CCCCCCChhhhHhhhhcccc-ccc---------ccCCc----------cce-EEEEEEECCeEEEEEEEeCCCCccCcCc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDS---------YDPTI----------ENT-FVKTTRMNNQDYDLKLVDTAGQDEYSIF   59 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~---------~~~t~----------~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~   59 (157)
                      +|.+|+|||||+++++...- ...         ...++          +.. ......+..+.+.+.+|||+|+.+|...
T Consensus         8 vGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~~~   87 (267)
T cd04169           8 ISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHEDFSED   87 (267)
T ss_pred             EcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchHHHHH
Confidence            69999999999999974211 000         00011          111 1233344556688899999999988877


Q ss_pred             hhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873          60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM  127 (157)
Q Consensus        60 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~  127 (157)
                      ....++.+|++|+|+|.++.... ....++... ..   ..             +|+++++||+|+..
T Consensus        88 ~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~-~~---~~-------------~P~iivvNK~D~~~  137 (267)
T cd04169          88 TYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVC-RL---RG-------------IPIITFINKLDREG  137 (267)
T ss_pred             HHHHHHHCCEEEEEEECCCCccH-HHHHHHHHH-Hh---cC-------------CCEEEEEECCccCC
Confidence            77788999999999999875332 223333322 11   12             89999999999854

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.60  E-value=1.5e-14  Score=111.68  Aligned_cols=134  Identities=19%  Similarity=0.166  Sum_probs=96.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCc-------hhhhc-cCCCEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF-------PAQYS-MDIHGYV   71 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~-~~~~~~i   71 (157)
                      +|+||||||||+|++++.......-|.+. +.....+...+  .++++.|.||..+....       ++... .++|+++
T Consensus         9 vGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~iv   86 (653)
T COG0370           9 VGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIV   86 (653)
T ss_pred             ecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEE
Confidence            69999999999999998776444334433 33345555555  44799999997665543       22233 4569999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873          72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus        72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                      -|.|.++.+.--   ....++++..                 .|++++.|+.|..+.+.+. -+.+++.+.+|+|.+++|
T Consensus        87 nVvDAtnLeRnL---yltlQLlE~g-----------------~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tv  145 (653)
T COG0370          87 NVVDATNLERNL---YLTLQLLELG-----------------IPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTV  145 (653)
T ss_pred             EEcccchHHHHH---HHHHHHHHcC-----------------CCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEE
Confidence            999988765422   2333444443                 9999999999987655554 347888899999999999


Q ss_pred             cccCCC
Q psy1873         152 AKQDDY  157 (157)
Q Consensus       152 a~~~~~  157 (157)
                      |++|+|
T Consensus       146 A~~g~G  151 (653)
T COG0370         146 AKRGEG  151 (653)
T ss_pred             eecCCC
Confidence            999986

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.60  E-value=1.1e-14  Score=106.00  Aligned_cols=78  Identities=19%  Similarity=0.305  Sum_probs=53.7

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccc-----cCCccceEEEE----------------EEECC-eEEEEEEEeCCCC----
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSY-----DPTIENTFVKT----------------TRMNN-QDYDLKLVDTAGQ----   53 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~-----~~t~~~~~~~~----------------~~~~~-~~~~~~i~D~~g~----   53 (157)
                      ||.|+||||||++++++.... ..|     .|+++..+...                ..+++ +.+.+++||++|.    
T Consensus         4 vG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv~ga   83 (318)
T cd01899           4 VGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLVPGA   83 (318)
T ss_pred             ECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCCCCc
Confidence            699999999999999987653 222     33333222110                11233 3477999999997    


Q ss_pred             ccCcCchhhh---ccCCCEEEEEEECCC
Q psy1873          54 DEYSIFPAQY---SMDIHGYVLVYSITS   78 (157)
Q Consensus        54 ~~~~~~~~~~---~~~~~~~ilv~d~~~   78 (157)
                      .++..+...+   ++++|++++|+|++.
T Consensus        84 ~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          84 HEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             cchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence            5555665554   899999999999973

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.60  E-value=3.1e-15  Score=94.76  Aligned_cols=107  Identities=24%  Similarity=0.290  Sum_probs=76.5

Q ss_pred             CCCCCCChhhhHhhhhccccccccc-CCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYD-PTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|+.|+|||+|+.++.+..+...+. +|++                          +..+...+.+.++.+++||+.++.
T Consensus         6 ~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~~~~~~   59 (124)
T smart00010        6 IGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCWRVDDR   59 (124)
T ss_pred             ECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEEEccCH
Confidence            6999999999999998877754443 4433                          333455667788999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++++.+  |...++..... +             .|.++++||.|+.+..++...+..        .|+++||++|+|
T Consensus        60 ~s~~~~--~~~~i~~~~k~-d-------------l~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~  113 (124)
T smart00010       60 DSADNK--NVPEVLVGNKS-D-------------LPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEE  113 (124)
T ss_pred             HHHHHH--hHHHHHhcCCC-C-------------CcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcch
Confidence            999876  76666544322 2             889999999998544444433333        456778888765

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.60  E-value=5.4e-15  Score=111.35  Aligned_cols=95  Identities=23%  Similarity=0.256  Sum_probs=62.2

Q ss_pred             EEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh----hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEE
Q psy1873          43 YDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK----SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL  118 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~----s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~v  118 (157)
                      ..+.+||+||+++|..........+|++++|+|.+++.    +.+.+.    .+ ....  .             .|+++
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l-~~~~--i-------------~~iiV  144 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----AL-DIIG--I-------------KNIVI  144 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HH-HHcC--C-------------CcEEE
Confidence            57899999999887654444455679999999999643    333222    11 1111  1             46899


Q ss_pred             EEeCCCCCCCcee--cHHHHHHHHHHh---CCcEEEeccccCCC
Q psy1873         119 VGNKKDLHMERMI--SYDEGKRLAESW---KAGFVEASAKQDDY  157 (157)
Q Consensus       119 v~nK~Dl~~~~~~--~~~~~~~~~~~~---~~~~~e~Sa~~~~~  157 (157)
                      |+||+|+.+....  ..++...++...   +.+++++||++|+|
T Consensus       145 VlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~g  188 (411)
T PRK04000        145 VQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVN  188 (411)
T ss_pred             EEEeeccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcC
Confidence            9999998653322  123344444332   47899999999986

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.59  E-value=8.3e-15  Score=109.97  Aligned_cols=138  Identities=17%  Similarity=0.159  Sum_probs=83.9

Q ss_pred             CCCCCCChhhhHhhhhccc-------c-----ccccc--CCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ-------F-----VDSYD--PTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM   65 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~-------~-----~~~~~--~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   65 (157)
                      +|..++|||||+++|+...       +     .+...  ...+.+. ...+.++.....+.+||+||+++|.........
T Consensus        18 ~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~~   97 (394)
T TIGR00485        18 IGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAA   97 (394)
T ss_pred             EeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHHh
Confidence            5899999999999997320       0     00000  0011111 222334444567889999999988755444556


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEE-EEEeCCCCCCCceec---HHHHHHHHH
Q psy1873          66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIV-LVGNKKDLHMERMIS---YDEGKRLAE  141 (157)
Q Consensus        66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~-vv~nK~Dl~~~~~~~---~~~~~~~~~  141 (157)
                      .+|++++|+|+++....+ ..+.+..+...    .             +|.+ ++.||+|+.+.....   .++...++.
T Consensus        98 ~~D~~ilVvda~~g~~~q-t~e~l~~~~~~----g-------------i~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~  159 (394)
T TIGR00485        98 QMDGAILVVSATDGPMPQ-TREHILLARQV----G-------------VPYIVVFLNKCDMVDDEELLELVEMEVRELLS  159 (394)
T ss_pred             hCCEEEEEEECCCCCcHH-HHHHHHHHHHc----C-------------CCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence            789999999998732222 11222222211    1             6655 689999986532221   235666676


Q ss_pred             HhC-----CcEEEeccccCC
Q psy1873         142 SWK-----AGFVEASAKQDD  156 (157)
Q Consensus       142 ~~~-----~~~~e~Sa~~~~  156 (157)
                      ..+     ++++.+||++|.
T Consensus       160 ~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       160 EYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             hcCCCccCccEEECcccccc
Confidence            665     789999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.59  E-value=7.2e-15  Score=94.43  Aligned_cols=122  Identities=19%  Similarity=0.187  Sum_probs=82.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCc----cCcCchhhhccCCCEEEEEEEC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD----EYSIFPAQYSMDIHGYVLVYSI   76 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~~~~ilv~d~   76 (157)
                      ||+.|||||||+++|.+...  .+..|....|           .=.+.||||.-    .+..-.-....++|.++++.|.
T Consensus         7 iG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~-----------~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da   73 (143)
T PF10662_consen    7 IGPSGSGKTTLAQALNGEEI--RYKKTQAIEY-----------YDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA   73 (143)
T ss_pred             ECCCCCCHHHHHHHHcCCCC--CcCccceeEe-----------cccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence            69999999999999987543  2222222111           11458999953    2222233345688999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEeccccC
Q psy1873          77 TSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVEASAKQD  155 (157)
Q Consensus        77 ~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~  155 (157)
                      +++.+.-.     ..+....   .             .|++-|.||+|+... ....+.++++.+.-|+ ..|++||.+|
T Consensus        74 t~~~~~~p-----P~fa~~f---~-------------~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~  131 (143)
T PF10662_consen   74 TEPRSVFP-----PGFASMF---N-------------KPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTG  131 (143)
T ss_pred             CCCCccCC-----chhhccc---C-------------CCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCC
Confidence            98765210     0011111   1             899999999999632 3356778888888898 7899999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       132 eG  133 (143)
T PF10662_consen  132 EG  133 (143)
T ss_pred             cC
Confidence            87

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.59  E-value=1.9e-14  Score=99.97  Aligned_cols=116  Identities=20%  Similarity=0.203  Sum_probs=75.9

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccc-----------------cCCccceEEEEEEEC--------CeEEEEEEEeCCCCc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSY-----------------DPTIENTFVKTTRMN--------NQDYDLKLVDTAGQD   54 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~-----------------~~t~~~~~~~~~~~~--------~~~~~~~i~D~~g~~   54 (157)
                      +|..++|||||+.+|+...-. ...                 .-|+.. ....+.+.        ++.+.+.+|||||+.
T Consensus         6 iGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~-~~~~~~~~~~~~~~~~~~~~~i~iiDTPG~~   84 (222)
T cd01885           6 IAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKS-SAISLYFEYEEEDKADGNEYLINLIDSPGHV   84 (222)
T ss_pred             ECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhcccccc-ceEEEEEecCcccccCCCceEEEEECCCCcc
Confidence            699999999999999743210 000                 001110 01112222        447889999999999


Q ss_pred             cCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC-CCceecH
Q psy1873          55 EYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH-MERMISY  133 (157)
Q Consensus        55 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~-~~~~~~~  133 (157)
                      .|.......++.+|++|+|+|+++....+.. ..+.....    ..             +|+++++||+|+. .+..++.
T Consensus        85 ~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~----~~-------------~p~ilviNKiD~~~~e~~~~~  146 (222)
T cd01885          85 DFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK----ER-------------VKPVLVINKIDRLILELKLSP  146 (222)
T ss_pred             ccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH----cC-------------CCEEEEEECCCcchhhhcCCH
Confidence            9999999999999999999999987655432 22222221    12             8999999999975 2334443


Q ss_pred             HH
Q psy1873         134 DE  135 (157)
Q Consensus       134 ~~  135 (157)
                      ++
T Consensus       147 ~~  148 (222)
T cd01885         147 EE  148 (222)
T ss_pred             HH
Confidence            33

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.58  E-value=3.1e-14  Score=102.15  Aligned_cols=143  Identities=20%  Similarity=0.194  Sum_probs=93.3

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCC----ccCcCchhhhcc---CCCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQ----DEYSIFPAQYSM---DIHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~---~~~~~il   72 (157)
                      ||-|++|||||++.+...+. +..|..|+-...-..+.+.+ .-.|.+-|+||-    ..-..+...|++   .+.+++.
T Consensus       165 VG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~h  243 (369)
T COG0536         165 VGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLH  243 (369)
T ss_pred             ccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhhheeEE
Confidence            79999999999999988766 56777776644433344422 335789999984    333445555555   4689999


Q ss_pred             EEECCChhh---HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc--E
Q psy1873          73 VYSITSHKS---FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAG--F  147 (157)
Q Consensus        73 v~d~~~~~s---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~  147 (157)
                      +.|++..+.   .++......++..+...            +.+.|.+||+||+|+....+........+.+..+..  +
T Consensus       244 viD~s~~~~~dp~~~~~~i~~EL~~Y~~~------------L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~  311 (369)
T COG0536         244 VIDLSPIDGRDPIEDYQTIRNELEKYSPK------------LAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFY  311 (369)
T ss_pred             EEecCcccCCCHHHHHHHHHHHHHHhhHH------------hccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcce
Confidence            999996553   44444444444433322            334899999999997554444344455555555543  3


Q ss_pred             EEeccccCCC
Q psy1873         148 VEASAKQDDY  157 (157)
Q Consensus       148 ~e~Sa~~~~~  157 (157)
                      + +||.+++|
T Consensus       312 ~-ISa~t~~g  320 (369)
T COG0536         312 L-ISALTREG  320 (369)
T ss_pred             e-eehhcccC
Confidence            3 99999875

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.58  E-value=2.3e-14  Score=102.32  Aligned_cols=134  Identities=22%  Similarity=0.211  Sum_probs=87.1

Q ss_pred             CCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCcc--CcCchhh------hccC-CCEEE
Q psy1873           2 GYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDE--YSIFPAQ------YSMD-IHGYV   71 (157)
Q Consensus         2 G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~------~~~~-~~~~i   71 (157)
                      |.||||||||++.+...+. ...|..|+-..+..++..++  .++|+.||||--+  ...+.+.      .++. .++++
T Consensus       175 G~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~Il  252 (346)
T COG1084         175 GYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVIL  252 (346)
T ss_pred             cCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEE
Confidence            9999999999999998877 57788887766666555555  5789999999422  2222221      1222 36788


Q ss_pred             EEEECCChh--hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEE
Q psy1873          72 LVYSITSHK--SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFV  148 (157)
Q Consensus        72 lv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~  148 (157)
                      +++|.+..-  +.+.-...+.++.....                .|+++|.||.|+.+...+.  +.......-+. ...
T Consensus       253 F~~D~Se~cgy~lE~Q~~L~~eIk~~f~----------------~p~v~V~nK~D~~~~e~~~--~~~~~~~~~~~~~~~  314 (346)
T COG1084         253 FLFDPSETCGYSLEEQISLLEEIKELFK----------------APIVVVINKIDIADEEKLE--EIEASVLEEGGEEPL  314 (346)
T ss_pred             EEEcCccccCCCHHHHHHHHHHHHHhcC----------------CCeEEEEecccccchhHHH--HHHHHHHhhcccccc
Confidence            999998654  34555566666665553                7999999999987544443  33333333333 345


Q ss_pred             EeccccC
Q psy1873         149 EASAKQD  155 (157)
Q Consensus       149 e~Sa~~~  155 (157)
                      .+++..+
T Consensus       315 ~~~~~~~  321 (346)
T COG1084         315 KISATKG  321 (346)
T ss_pred             ceeeeeh
Confidence            5555443

>PRK12735 elongation factor Tu; Reviewed

Probab=99.57  E-value=1.9e-14  Score=108.04  Aligned_cols=139  Identities=17%  Similarity=0.136  Sum_probs=83.6

Q ss_pred             CCCCCCChhhhHhhhhcc-------ccc-----ccc--cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG-------QFV-----DSY--DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM   65 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~-------~~~-----~~~--~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   65 (157)
                      +|..++|||||+++|+..       .+.     +..  ....+.+. .....+......+.++|+||+++|.......+.
T Consensus        18 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~   97 (396)
T PRK12735         18 IGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAA   97 (396)
T ss_pred             ECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHHHHHhhhc
Confidence            699999999999999852       100     000  00111111 112223333456789999999877655556667


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEE-EEEeCCCCCCCce---ecHHHHHHHHH
Q psy1873          66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIV-LVGNKKDLHMERM---ISYDEGKRLAE  141 (157)
Q Consensus        66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~-vv~nK~Dl~~~~~---~~~~~~~~~~~  141 (157)
                      .+|++++|+|..+...- ...+.+..+. ..   .             +|.+ ++.||+|+.+...   ....+...+..
T Consensus        98 ~aD~~llVvda~~g~~~-qt~e~l~~~~-~~---g-------------i~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~  159 (396)
T PRK12735         98 QMDGAILVVSAADGPMP-QTREHILLAR-QV---G-------------VPYIVVFLNKCDMVDDEELLELVEMEVRELLS  159 (396)
T ss_pred             cCCEEEEEEECCCCCch-hHHHHHHHHH-Hc---C-------------CCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence            88999999999874322 2222332222 11   1             7755 6799999864221   12234555665


Q ss_pred             HhC-----CcEEEeccccCCC
Q psy1873         142 SWK-----AGFVEASAKQDDY  157 (157)
Q Consensus       142 ~~~-----~~~~e~Sa~~~~~  157 (157)
                      ..+     ++++.+||++|.|
T Consensus       160 ~~~~~~~~~~ii~~Sa~~g~n  180 (396)
T PRK12735        160 KYDFPGDDTPIIRGSALKALE  180 (396)
T ss_pred             HcCCCcCceeEEecchhcccc
Confidence            543     6899999999864

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.57  E-value=2.5e-14  Score=99.68  Aligned_cols=69  Identities=17%  Similarity=0.145  Sum_probs=45.3

Q ss_pred             EEEEEEEeCCCCccCcCchhhhc--cCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEE
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQYS--MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV  119 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv  119 (157)
                      ...+.+.|+||+++|.......+  ..+|++++|.|.+.... .....++..+....                 +|++++
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~~-----------------ip~ivv  144 (224)
T cd04165          83 SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALALN-----------------IPVFVV  144 (224)
T ss_pred             CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHcC-----------------CCEEEE
Confidence            35678999999988865433333  36899999999876533 22223333332221                 899999


Q ss_pred             EeCCCCCCC
Q psy1873         120 GNKKDLHME  128 (157)
Q Consensus       120 ~nK~Dl~~~  128 (157)
                      .||+|+.+.
T Consensus       145 vNK~D~~~~  153 (224)
T cd04165         145 VTKIDLAPA  153 (224)
T ss_pred             EECccccCH
Confidence            999998543

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.57  E-value=3.2e-14  Score=101.80  Aligned_cols=136  Identities=15%  Similarity=0.146  Sum_probs=82.4

Q ss_pred             CCCCCCChhhhHhhhhccccccccc------CCc----------cceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYD------PTI----------ENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQY   63 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~------~t~----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   63 (157)
                      +|.+|+|||||+++++...-.....      .++          +... .....+....+.+.+||++|+.++.......
T Consensus         5 vG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~   84 (268)
T cd04170           5 VGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGETRAA   84 (268)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHHHHHH
Confidence            6999999999999997532110000      000          0000 1111222234678999999998888778888


Q ss_pred             ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh
Q psy1873          64 SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW  143 (157)
Q Consensus        64 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~  143 (157)
                      +..+|++++|+|.++........ .+..+..    ..             +|+++++||+|+....  .......+...+
T Consensus        85 l~~aD~~i~Vvd~~~g~~~~~~~-~~~~~~~----~~-------------~p~iivvNK~D~~~~~--~~~~~~~l~~~~  144 (268)
T cd04170          85 LRAADAALVVVSAQSGVEVGTEK-LWEFADE----AG-------------IPRIIFINKMDRERAD--FDKTLAALQEAF  144 (268)
T ss_pred             HHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cC-------------CCEEEEEECCccCCCC--HHHHHHHHHHHh
Confidence            99999999999999866543332 2222221    12             8999999999986431  223344455555


Q ss_pred             CCcEE--EeccccCC
Q psy1873         144 KAGFV--EASAKQDD  156 (157)
Q Consensus       144 ~~~~~--e~Sa~~~~  156 (157)
                      +.+++  .+...+|+
T Consensus       145 ~~~~~~~~ip~~~~~  159 (268)
T cd04170         145 GRPVVPLQLPIGEGD  159 (268)
T ss_pred             CCCeEEEEecccCCC
Confidence            65433  33344443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>KOG0077|consensus

Probab=99.55  E-value=1.1e-14  Score=94.17  Aligned_cols=111  Identities=20%  Similarity=0.297  Sum_probs=89.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|-.|+|||||++.+.+.+. ..+.||...+ ...+.+.+  ..+.-+|.+|+..-+..|..++..++++++.+|.-|.+
T Consensus        26 lGLDNAGKTTLLHMLKdDrl-~qhvPTlHPT-SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~e  101 (193)
T KOG0077|consen   26 LGLDNAGKTTLLHMLKDDRL-GQHVPTLHPT-SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQE  101 (193)
T ss_pred             EeecCCchhhHHHHHccccc-cccCCCcCCC-hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHH
Confidence            48899999999999987654 3455665532 22345555  56788999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME  128 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~  128 (157)
                      .|.+.+..+..++....-..             +|+++.+||+|.+..
T Consensus       102 r~~es~~eld~ll~~e~la~-------------vp~lilgnKId~p~a  136 (193)
T KOG0077|consen  102 RFAESKKELDALLSDESLAT-------------VPFLILGNKIDIPYA  136 (193)
T ss_pred             HhHHHHHHHHHHHhHHHHhc-------------CcceeecccccCCCc
Confidence            99999888888876664333             999999999998543

>PRK12736 elongation factor Tu; Reviewed

Probab=99.55  E-value=5.4e-14  Score=105.57  Aligned_cols=138  Identities=18%  Similarity=0.150  Sum_probs=83.5

Q ss_pred             CCCCCCChhhhHhhhhccccc------------cccc--CCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV------------DSYD--PTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM   65 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~------------~~~~--~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   65 (157)
                      +|..++|||||+.+|++....            +...  ...+.+. .....+......+.++|+||+++|......-+.
T Consensus        18 ~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~   97 (394)
T PRK12736         18 IGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAA   97 (394)
T ss_pred             EccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHHh
Confidence            599999999999999853110            0000  0111111 122233334456789999999887665555567


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCceec---HHHHHHHHH
Q psy1873          66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERMIS---YDEGKRLAE  141 (157)
Q Consensus        66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~~~---~~~~~~~~~  141 (157)
                      .+|++++|+|.++...-+ ....+..+...    .             +| ++|+.||+|+.+.....   .++...+..
T Consensus        98 ~~d~~llVvd~~~g~~~~-t~~~~~~~~~~----g-------------~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~  159 (394)
T PRK12736         98 QMDGAILVVAATDGPMPQ-TREHILLARQV----G-------------VPYLVVFLNKVDLVDDEELLELVEMEVRELLS  159 (394)
T ss_pred             hCCEEEEEEECCCCCchh-HHHHHHHHHHc----C-------------CCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence            889999999988642211 12222222221    1             77 67899999986432221   234555555


Q ss_pred             HhC-----CcEEEeccccCC
Q psy1873         142 SWK-----AGFVEASAKQDD  156 (157)
Q Consensus       142 ~~~-----~~~~e~Sa~~~~  156 (157)
                      ..+     ++++.+||++|.
T Consensus       160 ~~~~~~~~~~ii~vSa~~g~  179 (394)
T PRK12736        160 EYDFPGDDIPVIRGSALKAL  179 (394)
T ss_pred             HhCCCcCCccEEEeeccccc
Confidence            555     589999999974

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.53  E-value=4.4e-14  Score=99.65  Aligned_cols=86  Identities=15%  Similarity=0.087  Sum_probs=70.5

Q ss_pred             ccCcCchhhhccCCCEEEEEEECCChh-hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec
Q psy1873          54 DEYSIFPAQYSMDIHGYVLVYSITSHK-SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS  132 (157)
Q Consensus        54 ~~~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~  132 (157)
                      +++..+.+.+++++|++++|||++++. +++.+.+|+..+..    ..             +|++||+||+||.+.+.+.
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~-------------i~~vIV~NK~DL~~~~~~~   86 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QN-------------IEPIIVLNKIDLLDDEDME   86 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CC-------------CCEEEEEECcccCCCHHHH
Confidence            678888889999999999999999888 89999999875532    12             9999999999997655555


Q ss_pred             HHHHHHHHHHhCCcEEEeccccCCC
Q psy1873         133 YDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus       133 ~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+....+. ..+++++++||++|+|
T Consensus        87 ~~~~~~~~-~~g~~v~~~SAktg~g  110 (245)
T TIGR00157        87 KEQLDIYR-NIGYQVLMTSSKNQDG  110 (245)
T ss_pred             HHHHHHHH-HCCCeEEEEecCCchh
Confidence            45555554 4789999999999976

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.52  E-value=1.3e-13  Score=104.86  Aligned_cols=101  Identities=18%  Similarity=0.131  Sum_probs=71.3

Q ss_pred             CCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHH-------HHHHHHHHHHHHhccccCCCCCCCCCCC
Q psy1873          39 NNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFE-------VVQILYDKLLDMTGKIQNSSVKSPTSCV  111 (157)
Q Consensus        39 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~~  111 (157)
                      ......+.+.|+||+++|.......+..+|++|+|+|.++ .+|+       ...+.+..+ ....              
T Consensus        81 ~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~-~~~g--------------  144 (447)
T PLN00043         81 ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLA-FTLG--------------  144 (447)
T ss_pred             cCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHH-HHcC--------------
Confidence            3445678999999999999888888899999999999987 3332       333333222 1111              


Q ss_pred             CCC-cEEEEEeCCCCCCCc--e----ecHHHHHHHHHHhC-----CcEEEeccccCCC
Q psy1873         112 SSV-PIVLVGNKKDLHMER--M----ISYDEGKRLAESWK-----AGFVEASAKQDDY  157 (157)
Q Consensus       112 ~~~-p~~vv~nK~Dl~~~~--~----~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~  157 (157)
                        + +++|++||.|+.+..  +    -..++...++...|     ++|+++||++|+|
T Consensus       145 --i~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~n  200 (447)
T PLN00043        145 --VKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDN  200 (447)
T ss_pred             --CCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccc
Confidence              5 578899999975210  0    12355677777766     6799999999987

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.52  E-value=7.9e-14  Score=95.49  Aligned_cols=106  Identities=16%  Similarity=0.122  Sum_probs=62.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccc-eEE-EEEEEC-CeEEEEEEEeCCCCccCcCchhh-----hccCCCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIEN-TFV-KTTRMN-NQDYDLKLVDTAGQDEYSIFPAQ-----YSMDIHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~-~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~-----~~~~~~~~il   72 (157)
                      +|++|+|||||+|.+++.........+++. ... ....+. +....+.+||++|..........     .+..+|++++
T Consensus         7 ~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~   86 (197)
T cd04104           7 TGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFII   86 (197)
T ss_pred             ECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEE
Confidence            699999999999999986553322222221 000 000111 11235789999997644332222     3667888888


Q ss_pred             EEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873          73 VYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH  126 (157)
Q Consensus        73 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~  126 (157)
                      +.+    .++.....++.+.+...   .             .|+++|+||+|+.
T Consensus        87 v~~----~~~~~~d~~~~~~l~~~---~-------------~~~ilV~nK~D~~  120 (197)
T cd04104          87 ISS----TRFSSNDVKLAKAIQCM---G-------------KKFYFVRTKVDRD  120 (197)
T ss_pred             EeC----CCCCHHHHHHHHHHHHh---C-------------CCEEEEEecccch
Confidence            733    23444443333333333   2             8899999999984

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>CHL00071 tufA elongation factor Tu

Probab=99.51  E-value=1.7e-13  Score=103.37  Aligned_cols=139  Identities=19%  Similarity=0.156  Sum_probs=84.4

Q ss_pred             CCCCCCChhhhHhhhhccccc------ccccC--------CccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV------DSYDP--------TIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM   65 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~------~~~~~--------t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   65 (157)
                      +|.+++|||||+++|+...-.      ..+..        ..+... .....+......+.+.|+||+.+|.......+.
T Consensus        18 ~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~   97 (409)
T CHL00071         18 IGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAA   97 (409)
T ss_pred             ECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHHHHHHHHH
Confidence            599999999999999863110      00000        011111 111223333456789999998877665556677


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCcee---cHHHHHHHHH
Q psy1873          66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERMI---SYDEGKRLAE  141 (157)
Q Consensus        66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~~---~~~~~~~~~~  141 (157)
                      .+|++++|+|....-. ......+..+. ..   .             +| ++++.||.|+.+....   ..++...+..
T Consensus        98 ~~D~~ilVvda~~g~~-~qt~~~~~~~~-~~---g-------------~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~  159 (409)
T CHL00071         98 QMDGAILVVSAADGPM-PQTKEHILLAK-QV---G-------------VPNIVVFLNKEDQVDDEELLELVELEVRELLS  159 (409)
T ss_pred             hCCEEEEEEECCCCCc-HHHHHHHHHHH-Hc---C-------------CCEEEEEEEccCCCCHHHHHHHHHHHHHHHHH
Confidence            8999999999886432 22222232222 21   1             77 7789999998653221   1234555555


Q ss_pred             HhC-----CcEEEeccccCCC
Q psy1873         142 SWK-----AGFVEASAKQDDY  157 (157)
Q Consensus       142 ~~~-----~~~~e~Sa~~~~~  157 (157)
                      ..+     ++++.+||++|.|
T Consensus       160 ~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        160 KYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             HhCCCCCcceEEEcchhhccc
Confidence            544     6899999999864

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.51  E-value=1.9e-13  Score=104.68  Aligned_cols=100  Identities=19%  Similarity=0.158  Sum_probs=62.4

Q ss_pred             eEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEE
Q psy1873          41 QDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG  120 (157)
Q Consensus        41 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~  120 (157)
                      ....+.++|+||+++|......-+..+|++++|+|.++.-.-+....  ..+......               .|++|+.
T Consensus       105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~--~~l~~~lg~---------------~~iIvvv  167 (474)
T PRK05124        105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH--SFIATLLGI---------------KHLVVAV  167 (474)
T ss_pred             CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH--HHHHHHhCC---------------CceEEEE
Confidence            34578899999998876544444689999999999876422111111  112222211               5789999


Q ss_pred             eCCCCCCCceecHH----HHHHHHHHh----CCcEEEeccccCCC
Q psy1873         121 NKKDLHMERMISYD----EGKRLAESW----KAGFVEASAKQDDY  157 (157)
Q Consensus       121 nK~Dl~~~~~~~~~----~~~~~~~~~----~~~~~e~Sa~~~~~  157 (157)
                      ||+|+...+....+    +...+....    .++++.+||++|+|
T Consensus       168 NKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~n  212 (474)
T PRK05124        168 NKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDN  212 (474)
T ss_pred             EeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCC
Confidence            99998642221111    222333333    36899999999987

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.51  E-value=1.3e-13  Score=98.53  Aligned_cols=132  Identities=14%  Similarity=0.154  Sum_probs=79.4

Q ss_pred             CCCCCCChhhhHhhhhcccc----c---cc------ccC---CccceE---EEEEEECCeEEEEEEEeCCCCccCcCchh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF----V---DS------YDP---TIENTF---VKTTRMNNQDYDLKLVDTAGQDEYSIFPA   61 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~----~---~~------~~~---t~~~~~---~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   61 (157)
                      +|.+++|||||+++++...-    .   ..      +.+   ..+...   ...+.++  ...+.+|||||+.++...+.
T Consensus         5 vGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~df~~~~~   82 (270)
T cd01886           5 IAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--DHRINIIDTPGHVDFTIEVE   82 (270)
T ss_pred             EcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--CEEEEEEECCCcHHHHHHHH
Confidence            69999999999999973111    0   00      000   001111   2222333  46788999999998888888


Q ss_pred             hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873          62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE  141 (157)
Q Consensus        62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~  141 (157)
                      ..++.+|++|+|.|.++...-+. ...+..+..    ..             +|++++.||+|+.....  ......+..
T Consensus        83 ~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~----~~-------------~p~ivviNK~D~~~a~~--~~~~~~l~~  142 (270)
T cd01886          83 RSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR----YN-------------VPRIAFVNKMDRTGADF--FRVVEQIRE  142 (270)
T ss_pred             HHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH----cC-------------CCEEEEEECCCCCCCCH--HHHHHHHHH
Confidence            89999999999999887533221 222332221    12             89999999999864221  111233333


Q ss_pred             HhC---C-cEEEecccc
Q psy1873         142 SWK---A-GFVEASAKQ  154 (157)
Q Consensus       142 ~~~---~-~~~e~Sa~~  154 (157)
                      .++   + ..+.+||..
T Consensus       143 ~l~~~~~~~~~Pisa~~  159 (270)
T cd01886         143 KLGANPVPLQLPIGEED  159 (270)
T ss_pred             HhCCCceEEEeccccCC
Confidence            333   2 356677654

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.51  E-value=1.4e-13  Score=106.35  Aligned_cols=125  Identities=14%  Similarity=0.125  Sum_probs=77.7

Q ss_pred             CCCCCCChhhhHhhhhccc-ccc---c-------------cc---CCccceE-EEEEEECCeEEEEEEEeCCCCccCcCc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ-FVD---S-------------YD---PTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF   59 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~-~~~---~-------------~~---~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~   59 (157)
                      +|.+++|||||+++|+... ...   .             +.   ...+..+ ...+.++...+.+.+|||||+.+|...
T Consensus        16 iGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~df~~~   95 (526)
T PRK00741         16 ISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHEDFSED   95 (526)
T ss_pred             ECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCchhhHHH
Confidence            6999999999999996311 000   0             00   0111122 222334445577899999999999887


Q ss_pred             hhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHH
Q psy1873          60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRL  139 (157)
Q Consensus        60 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~  139 (157)
                      ....++.+|++|+|+|.++.... ....++...    ....             +|+++++||+|+....  ..+....+
T Consensus        96 ~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~----~~~~-------------iPiiv~iNK~D~~~a~--~~~~l~~i  155 (526)
T PRK00741         96 TYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC----RLRD-------------TPIFTFINKLDRDGRE--PLELLDEI  155 (526)
T ss_pred             HHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH----HhcC-------------CCEEEEEECCcccccC--HHHHHHHH
Confidence            77788999999999999875322 223333322    2222             9999999999985432  22223344


Q ss_pred             HHHhCC
Q psy1873         140 AESWKA  145 (157)
Q Consensus       140 ~~~~~~  145 (157)
                      ...+++
T Consensus       156 ~~~l~~  161 (526)
T PRK00741        156 EEVLGI  161 (526)
T ss_pred             HHHhCC
Confidence            444554

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.49  E-value=2.5e-13  Score=102.36  Aligned_cols=99  Identities=20%  Similarity=0.122  Sum_probs=63.4

Q ss_pred             EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN  121 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n  121 (157)
                      ...+.++|+||+++|.......+..+|++|+|+|......-+... .+ .+......               .+++|+.|
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~-~~-~~~~~~~~---------------~~iivviN  141 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR-HS-YIASLLGI---------------RHVVLAVN  141 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH-HH-HHHHHcCC---------------CcEEEEEE
Confidence            457889999999988765555678999999999987653222111 11 12222211               56899999


Q ss_pred             CCCCCCCceec----HHHHHHHHHHhC---CcEEEeccccCCC
Q psy1873         122 KKDLHMERMIS----YDEGKRLAESWK---AGFVEASAKQDDY  157 (157)
Q Consensus       122 K~Dl~~~~~~~----~~~~~~~~~~~~---~~~~e~Sa~~~~~  157 (157)
                      |+|+.....-.    .++...+.+..+   ++++++||++|+|
T Consensus       142 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~n  184 (406)
T TIGR02034       142 KMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDN  184 (406)
T ss_pred             ecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCC
Confidence            99986422211    122333444444   4799999999986

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.49  E-value=3.2e-13  Score=94.03  Aligned_cols=137  Identities=18%  Similarity=0.181  Sum_probs=78.1

Q ss_pred             CCCCCCChhhhHhhhhccccccc---ccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc-----hhhhccCCCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDS---YDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF-----PAQYSMDIHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----~~~~~~~~~~~il   72 (157)
                      +|++++||||+.+.+-.+..+..   ..+|+... ...+.. .....+.+||+|||..+...     ....++++.++|+
T Consensus         5 mG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve-~~~v~~-~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIy   82 (232)
T PF04670_consen    5 MGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVE-KSHVRF-LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIY   82 (232)
T ss_dssp             EESTTSSHHHHHHHHHS---GGGGGG-----SEE-EEEEEC-TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEE
T ss_pred             EcCCCCChhhHHHHHHcCCCchhccccCCcCCce-EEEEec-CCCcEEEEEEcCCccccccccccccHHHHHhccCEEEE
Confidence            69999999999888765433211   12444322 222221 22357899999999866543     5778999999999


Q ss_pred             EEECCChhh---HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc--ee----cHHHHHHHHHHh
Q psy1873          73 VYSITSHKS---FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER--MI----SYDEGKRLAESW  143 (157)
Q Consensus        73 v~d~~~~~s---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~--~~----~~~~~~~~~~~~  143 (157)
                      |+|+.+.+-   +..+...+..+.+..+               .+.+-|...|.|+..+.  ..    ..++....+...
T Consensus        83 V~D~qs~~~~~~l~~~~~~i~~l~~~sp---------------~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~  147 (232)
T PF04670_consen   83 VFDAQSDDYDEDLAYLSDCIEALRQYSP---------------NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDL  147 (232)
T ss_dssp             EEETT-STCHHHHHHHHHHHHHHHHHST---------------T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEcccccHHHHHHHHHHHHHHHHHhCC---------------CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhc
Confidence            999995442   2333344444444333               38899999999986421  11    112234444555


Q ss_pred             C---CcEEEecccc
Q psy1873         144 K---AGFVEASAKQ  154 (157)
Q Consensus       144 ~---~~~~e~Sa~~  154 (157)
                      +   +.++.||-.+
T Consensus       148 ~~~~~~~~~TSI~D  161 (232)
T PF04670_consen  148 GIEDITFFLTSIWD  161 (232)
T ss_dssp             T-TSEEEEEE-TTS
T ss_pred             cccceEEEeccCcC
Confidence            5   7788888655

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PLN03126 Elongation factor Tu; Provisional

Probab=99.49  E-value=2.9e-13  Score=103.46  Aligned_cols=139  Identities=19%  Similarity=0.151  Sum_probs=84.9

Q ss_pred             CCCCCCChhhhHhhhhccc------ccccc--------cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ------FVDSY--------DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM   65 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~------~~~~~--------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   65 (157)
                      +|..++|||||+++|+...      ....+        ....+... .....+......+.++|+||+++|.......+.
T Consensus        87 iGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~  166 (478)
T PLN03126         87 IGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAA  166 (478)
T ss_pred             ECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHHHHHHh
Confidence            5999999999999998521      11110        00111111 111122233456789999999988766666677


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCcee---cHHHHHHHHH
Q psy1873          66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERMI---SYDEGKRLAE  141 (157)
Q Consensus        66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~~---~~~~~~~~~~  141 (157)
                      .+|++++|+|..+...- ...+++..+....                 +| ++|+.||+|+.+....   ..++...+..
T Consensus       167 ~aD~ailVVda~~G~~~-qt~e~~~~~~~~g-----------------i~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~  228 (478)
T PLN03126        167 QMDGAILVVSGADGPMP-QTKEHILLAKQVG-----------------VPNMVVFLNKQDQVDDEELLELVELEVRELLS  228 (478)
T ss_pred             hCCEEEEEEECCCCCcH-HHHHHHHHHHHcC-----------------CCeEEEEEecccccCHHHHHHHHHHHHHHHHH
Confidence            89999999998865332 2233333332221                 77 7789999998652221   1224445554


Q ss_pred             Hh-----CCcEEEeccccCCC
Q psy1873         142 SW-----KAGFVEASAKQDDY  157 (157)
Q Consensus       142 ~~-----~~~~~e~Sa~~~~~  157 (157)
                      ..     +++++.+||.+|.|
T Consensus       229 ~~g~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        229 SYEFPGDDIPIISGSALLALE  249 (478)
T ss_pred             hcCCCcCcceEEEEEcccccc
Confidence            43     46899999998853

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.47  E-value=2.6e-13  Score=107.40  Aligned_cols=99  Identities=16%  Similarity=0.112  Sum_probs=62.2

Q ss_pred             EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN  121 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n  121 (157)
                      ...+.++|+||+++|.......+..+|++++|+|.++...-+ ....+. +......               .|++|+.|
T Consensus       103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~-~~~~~~~---------------~~iivvvN  165 (632)
T PRK05506        103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSF-IASLLGI---------------RHVVLAVN  165 (632)
T ss_pred             CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHH-HHHHhCC---------------CeEEEEEE
Confidence            346789999999887654455678899999999987643211 111111 2222211               57889999


Q ss_pred             CCCCCCCcee----cHHHHHHHHHHhC---CcEEEeccccCCC
Q psy1873         122 KKDLHMERMI----SYDEGKRLAESWK---AGFVEASAKQDDY  157 (157)
Q Consensus       122 K~Dl~~~~~~----~~~~~~~~~~~~~---~~~~e~Sa~~~~~  157 (157)
                      |+|+.+..+-    ...+...+....+   ++++.+||++|+|
T Consensus       166 K~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~n  208 (632)
T PRK05506        166 KMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDN  208 (632)
T ss_pred             ecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCC
Confidence            9998642211    1122333444555   4699999999986

>KOG1707|consensus

Probab=99.47  E-value=5.6e-13  Score=101.24  Aligned_cols=135  Identities=21%  Similarity=0.311  Sum_probs=102.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|+.++|||.+++.|+++.+...+..+....| ...+.+.++...+.+-|.+-. ....+.... ..||+++++||++++
T Consensus       431 ~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p  508 (625)
T KOG1707|consen  431 VGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNP  508 (625)
T ss_pred             EcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCc
Confidence            69999999999999999988777767777655 666666777777888888765 333333333 889999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEeccc
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVEASAK  153 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~  153 (157)
                      .+|+.+..........   ..             .|++.|++|+|+.+..+...-+..++|+++++ +-...|.+
T Consensus       509 ~sf~~~a~v~~~~~~~---~~-------------~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~  567 (625)
T KOG1707|consen  509 RSFEYLAEVYNKYFDL---YK-------------IPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSK  567 (625)
T ss_pred             hHHHHHHHHHHHhhhc---cC-------------CceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccC
Confidence            9999887665554433   12             99999999999976554333444899999998 45666666

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.47  E-value=2.3e-13  Score=91.46  Aligned_cols=135  Identities=21%  Similarity=0.250  Sum_probs=79.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCC----------ccCcCchhhhccC---
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQ----------DEYSIFPAQYSMD---   66 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~~~~~~~---   66 (157)
                      +|.+|||||||+|++++++-......|-|.+. ..-+.+++.   +.+.|.||-          +....+...|++.   
T Consensus        30 ~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~  106 (200)
T COG0218          30 AGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRAN  106 (200)
T ss_pred             EccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchh
Confidence            59999999999999999774433333434222 333344443   688999982          3334444555554   


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh---
Q psy1873          67 IHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW---  143 (157)
Q Consensus        67 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~---  143 (157)
                      -.+++++.|+..+-  ..+++.+-+++....                +|++|++||+|........ +.....++.+   
T Consensus       107 L~~vvlliD~r~~~--~~~D~em~~~l~~~~----------------i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~  167 (200)
T COG0218         107 LKGVVLLIDARHPP--KDLDREMIEFLLELG----------------IPVIVVLTKADKLKKSERN-KQLNKVAEELKKP  167 (200)
T ss_pred             heEEEEEEECCCCC--cHHHHHHHHHHHHcC----------------CCeEEEEEccccCChhHHH-HHHHHHHHHhcCC
Confidence            24677777876553  333333333333332                9999999999976643332 2222233222   


Q ss_pred             -CCc--EEEeccccCCC
Q psy1873         144 -KAG--FVEASAKQDDY  157 (157)
Q Consensus       144 -~~~--~~e~Sa~~~~~  157 (157)
                       ...  ++-.|+.++.|
T Consensus       168 ~~~~~~~~~~ss~~k~G  184 (200)
T COG0218         168 PPDDQWVVLFSSLKKKG  184 (200)
T ss_pred             CCccceEEEEecccccC
Confidence             222  66677777654

>COG2262 HflX GTPases [General function prediction only]

Probab=99.47  E-value=1.6e-12  Score=95.49  Aligned_cols=137  Identities=20%  Similarity=0.177  Sum_probs=88.1

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC--chh------hhccCCCEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI--FPA------QYSMDIHGYV   71 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--~~~------~~~~~~~~~i   71 (157)
                      +|..|+|||||+|++++.... .....++-+.....+.+.+ ...+.+-||-|.-+--+  +..      .....+|+++
T Consensus       198 vGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlll  276 (411)
T COG2262         198 VGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLL  276 (411)
T ss_pred             EeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEE
Confidence            699999999999999976554 2233343444455555554 23467899998543222  111      1346789999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873          72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus        72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                      .|.|.+++...+++..-.. ++....-..             +|+++|.||.|+..... .   ......... ..+.+|
T Consensus       277 hVVDaSdp~~~~~~~~v~~-vL~el~~~~-------------~p~i~v~NKiD~~~~~~-~---~~~~~~~~~-~~v~iS  337 (411)
T COG2262         277 HVVDASDPEILEKLEAVED-VLAEIGADE-------------IPIILVLNKIDLLEDEE-I---LAELERGSP-NPVFIS  337 (411)
T ss_pred             EEeecCChhHHHHHHHHHH-HHHHcCCCC-------------CCEEEEEecccccCchh-h---hhhhhhcCC-CeEEEE
Confidence            9999999977666655443 344433222             99999999999755333 1   111111112 479999


Q ss_pred             cccCCC
Q psy1873         152 AKQDDY  157 (157)
Q Consensus       152 a~~~~~  157 (157)
                      |++|+|
T Consensus       338 A~~~~g  343 (411)
T COG2262         338 AKTGEG  343 (411)
T ss_pred             eccCcC
Confidence            999986

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.46  E-value=1.4e-12  Score=81.88  Aligned_cols=101  Identities=24%  Similarity=0.254  Sum_probs=63.8

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC---------chhhhccCCCE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI---------FPAQYSMDIHG   69 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~~~~~~   69 (157)
                      +|.+|+|||||+|+|++...  .....+++.......+.+++..+  .++|+||-..-..         .....+..+|+
T Consensus         5 iG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~   82 (116)
T PF01926_consen    5 IGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQISKSDL   82 (116)
T ss_dssp             EESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHCTESE
T ss_pred             ECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHHHCCE
Confidence            69999999999999998543  23333333333345556677554  6999999643211         12223478899


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeC
Q psy1873          70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK  122 (157)
Q Consensus        70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK  122 (157)
                      +++|+|.+++.. +.....+..+ +    ..             .|+++|.||
T Consensus        83 ii~vv~~~~~~~-~~~~~~~~~l-~----~~-------------~~~i~v~NK  116 (116)
T PF01926_consen   83 IIYVVDASNPIT-EDDKNILREL-K----NK-------------KPIILVLNK  116 (116)
T ss_dssp             EEEEEETTSHSH-HHHHHHHHHH-H----TT-------------SEEEEEEES
T ss_pred             EEEEEECCCCCC-HHHHHHHHHH-h----cC-------------CCEEEEEcC
Confidence            999999877422 2222222333 1    22             899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.46  E-value=1.5e-12  Score=103.96  Aligned_cols=133  Identities=13%  Similarity=0.086  Sum_probs=82.9

Q ss_pred             CCCCCCChhhhHhhhhccccc----cccc--------------CCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCchh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV----DSYD--------------PTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA   61 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~----~~~~--------------~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   61 (157)
                      +|.+++|||||+++|+...-.    ....              ..+. ......+.++  ...+.+|||||+.++.....
T Consensus        16 iG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~   93 (689)
T TIGR00484        16 SAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPGHVDFTVEVE   93 (689)
T ss_pred             ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCCCcchhHHHH
Confidence            699999999999999732110    0000              0010 1112333343  46789999999999888888


Q ss_pred             hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873          62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE  141 (157)
Q Consensus        62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~  141 (157)
                      ..++.+|++|+|+|.++....+.. ..+..+...    .             +|+++++||+|+....  .......+..
T Consensus        94 ~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~----~-------------~p~ivviNK~D~~~~~--~~~~~~~i~~  153 (689)
T TIGR00484        94 RSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANRY----E-------------VPRIAFVNKMDKTGAN--FLRVVNQIKQ  153 (689)
T ss_pred             HHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHHc----C-------------CCEEEEEECCCCCCCC--HHHHHHHHHH
Confidence            889999999999999886554433 222222211    2             8999999999986533  1222334444


Q ss_pred             HhCC----cEEEeccccC
Q psy1873         142 SWKA----GFVEASAKQD  155 (157)
Q Consensus       142 ~~~~----~~~e~Sa~~~  155 (157)
                      .++.    ..+.+||..+
T Consensus       154 ~l~~~~~~~~ipis~~~~  171 (689)
T TIGR00484       154 RLGANAVPIQLPIGAEDN  171 (689)
T ss_pred             HhCCCceeEEeccccCCC
Confidence            4443    2456666554

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG3905|consensus

Probab=99.44  E-value=1.1e-12  Score=93.79  Aligned_cols=154  Identities=13%  Similarity=0.075  Sum_probs=102.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEEC--CeEEEEEEEeCCCCccCcCchhhhccCC----CEEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMN--NQDYDLKLVDTAGQDEYSIFPAQYSMDI----HGYVLV   73 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~----~~~ilv   73 (157)
                      +|+.++|||||+.++-+..   .+....+-.| .-.+.-+  +...++.+|-..|......+.+..+...    -.+||+
T Consensus        58 lGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlvilt  134 (473)
T KOG3905|consen   58 LGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVILT  134 (473)
T ss_pred             EccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEEEE
Confidence            5999999999999986643   2333334334 2222211  2235678899988877777766665544    378999


Q ss_pred             EECCCh-hhHHHHHHHHHHHHHHhccccC-------------------------------CC------CC----------
Q psy1873          74 YSITSH-KSFEVVQILYDKLLDMTGKIQN-------------------------------SS------VK----------  105 (157)
Q Consensus        74 ~d~~~~-~s~~~~~~~~~~i~~~~~~~~~-------------------------------~~------~~----------  105 (157)
                      .|+++| .-++.++.|..-+.++.....-                               ++      ..          
T Consensus       135 asms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~  214 (473)
T KOG3905|consen  135 ASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQ  214 (473)
T ss_pred             EecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccccCC
Confidence            999999 4567778887766554432111                               00      00          


Q ss_pred             CCCCCCCCCcEEEEEeCCCCC----CCceecH-------HHHHHHHHHhCCcEEEeccccCCC
Q psy1873         106 SPTSCVSSVPIVLVGNKKDLH----MERMISY-------DEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus       106 ~~~~~~~~~p~~vv~nK~Dl~----~~~~~~~-------~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ...+.+..+|++||.+|||..    .+.....       ...++||-.+|+..+.+|+|+..|
T Consensus       215 dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KN  277 (473)
T KOG3905|consen  215 DTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKN  277 (473)
T ss_pred             cchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccc
Confidence            004567899999999999972    3333222       336889999999999999999876

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.44  E-value=1.9e-12  Score=92.53  Aligned_cols=148  Identities=20%  Similarity=0.160  Sum_probs=97.4

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC-------chhhhccCCCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI-------FPAQYSMDIHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~~~~il   72 (157)
                      ||+|+||||||++++++.+- ...|..|+.......+.+++  ..+|+.|+||--.-.+       -.-...++||.+|+
T Consensus        69 VGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIii  146 (365)
T COG1163          69 VGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIII  146 (365)
T ss_pred             EcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEE
Confidence            69999999999999998766 46677777766677777766  7789999997432222       13345789999999


Q ss_pred             EEECCChhh-HHHHHHHHHHHHHHhccccC--------------CC---C-CCC--------------------------
Q psy1873          73 VYSITSHKS-FEVVQILYDKLLDMTGKIQN--------------SS---V-KSP--------------------------  107 (157)
Q Consensus        73 v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~--------------~~---~-~~~--------------------------  107 (157)
                      |.|+....+ .+.+.+.+...--.....+.              ..   . +..                          
T Consensus       147 Vld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTl  226 (365)
T COG1163         147 VLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTL  226 (365)
T ss_pred             EEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcH
Confidence            999996665 55555544443111111000              00   0 000                          


Q ss_pred             -------CCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873         108 -------TSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus       108 -------~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                             ......+|.++|.||.|+..     .++...+.+..  .++.+||+.+.|
T Consensus       227 Dd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~n  276 (365)
T COG1163         227 DDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGIN  276 (365)
T ss_pred             HHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCC
Confidence                   11134689999999999855     34455555444  688899998865

>TIGR00503 prfC peptide chain release factor 3

Probab=99.44  E-value=1.1e-12  Score=101.54  Aligned_cols=109  Identities=15%  Similarity=0.240  Sum_probs=71.8

Q ss_pred             CCCCCCChhhhHhhhhc-cccccc-------------------ccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCc
Q psy1873           1 MGYRSVGKSSLSIQFVD-GQFVDS-------------------YDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF   59 (157)
Q Consensus         1 vG~~~~GKssli~~~~~-~~~~~~-------------------~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~   59 (157)
                      ||.+++|||||+++|+. ......                   .....+..+ ...+.++.+.+.+.+|||||+.+|...
T Consensus        17 iGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~df~~~   96 (527)
T TIGR00503        17 ISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHEDFSED   96 (527)
T ss_pred             EcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChhhHHHH
Confidence            69999999999999863 111100                   000112222 333445556688999999999988876


Q ss_pred             hhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873          60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM  127 (157)
Q Consensus        60 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~  127 (157)
                      ....+..+|++|+|+|.++.-. .....++. +...   ..             +|+++++||+|+..
T Consensus        97 ~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~~---~~-------------~PiivviNKiD~~~  146 (527)
T TIGR00503        97 TYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTRL---RD-------------TPIFTFMNKLDRDI  146 (527)
T ss_pred             HHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHHh---cC-------------CCEEEEEECccccC
Confidence            6778899999999999987421 12233333 2222   22             89999999999853

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK13351 elongation factor G; Reviewed

Probab=99.44  E-value=7.6e-13  Score=105.72  Aligned_cols=107  Identities=17%  Similarity=0.172  Sum_probs=74.7

Q ss_pred             CCCCCCChhhhHhhhhcccc-------------cc-------cccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-------------VD-------SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP   60 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-------------~~-------~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   60 (157)
                      +|..++|||||+++|+...-             ..       .+..|+... ...+.+  ....+.+|||||+.+|....
T Consensus        14 iG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~-~~~~~~--~~~~i~liDtPG~~df~~~~   90 (687)
T PRK13351         14 LAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESA-ATSCDW--DNHRINLIDTPGHIDFTGEV   90 (687)
T ss_pred             ECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccc-eEEEEE--CCEEEEEEECCCcHHHHHHH
Confidence            69999999999999975210             00       011122211 122333  35778999999999998888


Q ss_pred             hhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q psy1873          61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME  128 (157)
Q Consensus        61 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~  128 (157)
                      ..+++.+|++++|+|.++....+....| ..+...    .             +|+++++||+|+...
T Consensus        91 ~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~~----~-------------~p~iiviNK~D~~~~  140 (687)
T PRK13351         91 ERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADRY----G-------------IPRLIFINKMDRVGA  140 (687)
T ss_pred             HHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHhc----C-------------CCEEEEEECCCCCCC
Confidence            9999999999999999987766544333 332221    2             899999999998653

>KOG1191|consensus

Probab=99.44  E-value=4.7e-13  Score=99.97  Aligned_cols=146  Identities=22%  Similarity=0.113  Sum_probs=92.6

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCcc-CcC----c----hhhhccCCCE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDE-YSI----F----PAQYSMDIHG   69 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~----~----~~~~~~~~~~   69 (157)
                      +|+||||||||+|.|.+.+.  ......|+.+.....+.++|  +.+.+.||+|-.+ -..    +    ....+..+|+
T Consensus       274 vGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~adv  351 (531)
T KOG1191|consen  274 VGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARKRIERADV  351 (531)
T ss_pred             EcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHHHHhhcCE
Confidence            69999999999999998766  45555666777778888888  5568899999654 111    1    2234677899


Q ss_pred             EEEEEEC--CChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC-ceecHHHHHHHHHHhC--
Q psy1873          70 YVLVYSI--TSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME-RMISYDEGKRLAESWK--  144 (157)
Q Consensus        70 ~ilv~d~--~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~-~~~~~~~~~~~~~~~~--  144 (157)
                      +++++|.  ++-++--.+.+.+...-.......+++.+        .|++++.||.|+... ++++..-..+... .+  
T Consensus       352 i~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~--------~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~  422 (531)
T KOG1191|consen  352 ILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEK--------QRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRS  422 (531)
T ss_pred             EEEEecccccccccchHHHHHHHHhccceEEEeccccc--------cceEEEechhhccCccccccCCceecccc-ccCc
Confidence            9999998  44444333334343333333333333322        889999999998654 3333211111111 12  


Q ss_pred             -C-cEEEeccccCCC
Q psy1873         145 -A-GFVEASAKQDDY  157 (157)
Q Consensus       145 -~-~~~e~Sa~~~~~  157 (157)
                       . ...++|++|++|
T Consensus       423 ~~~i~~~vs~~tkeg  437 (531)
T KOG1191|consen  423 VFPIVVEVSCTTKEG  437 (531)
T ss_pred             ccceEEEeeechhhh
Confidence             3 456689999875

>KOG1423|consensus

Probab=99.43  E-value=1.2e-12  Score=92.81  Aligned_cols=107  Identities=21%  Similarity=0.258  Sum_probs=65.5

Q ss_pred             CCCCCCChhhhHhhhhccccccc--ccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC------------chhhhccC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDS--YDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI------------FPAQYSMD   66 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------------~~~~~~~~   66 (157)
                      ||.||||||||.|.+++.+....  ...|+......  .+......+.++||||--.-..            -....+..
T Consensus        78 IG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilg--i~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~  155 (379)
T KOG1423|consen   78 IGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILG--IITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQN  155 (379)
T ss_pred             EcCCCcchhhhhhHhhCCccccccccccceeeeeeE--EEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhh
Confidence            69999999999999999877432  22233322222  2333446788999999432211            11234567


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873          67 IHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH  126 (157)
Q Consensus        67 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~  126 (157)
                      +|.+++++|+++....-.- +.+ ..+.....               +|-++|.||.|..
T Consensus       156 AD~vvVv~Das~tr~~l~p-~vl-~~l~~ys~---------------ips~lvmnkid~~  198 (379)
T KOG1423|consen  156 ADCVVVVVDASATRTPLHP-RVL-HMLEEYSK---------------IPSILVMNKIDKL  198 (379)
T ss_pred             CCEEEEEEeccCCcCccCh-HHH-HHHHHHhc---------------CCceeeccchhcc
Confidence            8999999999974322111 111 12222222               8889999999975

>KOG0090|consensus

Probab=99.43  E-value=3.6e-13  Score=90.82  Aligned_cols=109  Identities=24%  Similarity=0.292  Sum_probs=75.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhcc---CCCEEEEEEECC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM---DIHGYVLVYSIT   77 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~~~~ilv~d~~   77 (157)
                      +|+.+||||+|+.+|..+.+.....+-...  ......+.  -..++.|.||+.+.+.-...+++   .+.++++|.|..
T Consensus        44 ~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn--~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa  119 (238)
T KOG0090|consen   44 VGLSDSGKTSLFTQLITGSHRGTVTSIEPN--EATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSA  119 (238)
T ss_pred             EecCCCCceeeeeehhcCCccCeeeeeccc--eeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeEEEEEecc
Confidence            599999999999999987544333221111  12222222  23689999999998876666666   678899998865


Q ss_pred             -ChhhHHHHHHHHHHHHHHhc--cccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873          78 -SHKSFEVVQILYDKLLDMTG--KIQNSSVKSPTSCVSSVPIVLVGNKKDLH  126 (157)
Q Consensus        78 -~~~s~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~  126 (157)
                       .+.....+..++-.++-...  ...             +|++|++||.|+.
T Consensus       120 ~f~k~vrdvaefLydil~~~~~~~~~-------------~~vLIaCNKqDl~  158 (238)
T KOG0090|consen  120 TFLKNVRDVAEFLYDILLDSRVKKNK-------------PPVLIACNKQDLF  158 (238)
T ss_pred             ccchhhHHHHHHHHHHHHhhccccCC-------------CCEEEEecchhhh
Confidence             45556777777777766653  223             9999999999985

>PRK00049 elongation factor Tu; Reviewed

Probab=99.41  E-value=2.6e-12  Score=96.59  Aligned_cols=139  Identities=17%  Similarity=0.134  Sum_probs=82.5

Q ss_pred             CCCCCCChhhhHhhhhccccc------------cccc--CCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV------------DSYD--PTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM   65 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~------------~~~~--~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   65 (157)
                      +|..++|||||+++|+.....            +...  ...+.+. .....+......+.+.|+||+.+|.......+.
T Consensus        18 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~   97 (396)
T PRK00049         18 IGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAA   97 (396)
T ss_pred             EeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhhc
Confidence            589999999999999863110            0000  0111111 122233334456789999999877665556678


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEE-EEEeCCCCCCCcee---cHHHHHHHHH
Q psy1873          66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIV-LVGNKKDLHMERMI---SYDEGKRLAE  141 (157)
Q Consensus        66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~-vv~nK~Dl~~~~~~---~~~~~~~~~~  141 (157)
                      .+|++++|+|.++... ......+..+...    .             +|.+ |+.||.|+.+....   ...+...+..
T Consensus        98 ~aD~~llVVDa~~g~~-~qt~~~~~~~~~~----g-------------~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~  159 (396)
T PRK00049         98 QMDGAILVVSAADGPM-PQTREHILLARQV----G-------------VPYIVVFLNKCDMVDDEELLELVEMEVRELLS  159 (396)
T ss_pred             cCCEEEEEEECCCCCc-hHHHHHHHHHHHc----C-------------CCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence            8999999999886432 2222333322222    1             7875 68999998642221   1223344444


Q ss_pred             Hh-----CCcEEEeccccCCC
Q psy1873         142 SW-----KAGFVEASAKQDDY  157 (157)
Q Consensus       142 ~~-----~~~~~e~Sa~~~~~  157 (157)
                      ..     +++++.+||++|.|
T Consensus       160 ~~~~~~~~~~iv~iSa~~g~~  180 (396)
T PRK00049        160 KYDFPGDDTPIIRGSALKALE  180 (396)
T ss_pred             hcCCCccCCcEEEeecccccC
Confidence            33     36899999998753

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.41  E-value=2.3e-12  Score=96.45  Aligned_cols=77  Identities=19%  Similarity=0.177  Sum_probs=51.8

Q ss_pred             CCCCCCChhhhHhhhhcccccc-cccCCccceEEEEEE---------------------ECC-eEEEEEEEeCCCC----
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVD-SYDPTIENTFVKTTR---------------------MNN-QDYDLKLVDTAGQ----   53 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~-~~~~t~~~~~~~~~~---------------------~~~-~~~~~~i~D~~g~----   53 (157)
                      ||.||||||||+|++++..... .|..++.+.....+.                     .++ ..+.+++||++|.    
T Consensus         7 vG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl~~ga   86 (396)
T PRK09602          7 VGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGLVPGA   86 (396)
T ss_pred             ECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCcCCCc
Confidence            6999999999999999876642 343222111111111                     111 2367899999994    


Q ss_pred             ccCcCchhhh---ccCCCEEEEEEECC
Q psy1873          54 DEYSIFPAQY---SMDIHGYVLVYSIT   77 (157)
Q Consensus        54 ~~~~~~~~~~---~~~~~~~ilv~d~~   77 (157)
                      .....+...+   ++++|++++|+|..
T Consensus        87 ~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         87 HEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            4455566666   88999999999997

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=8.5e-12  Score=94.32  Aligned_cols=133  Identities=20%  Similarity=0.205  Sum_probs=91.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccc-eEEEEEEEC-CeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIEN-TFVKTTRMN-NQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   78 (157)
                      ||.---|||||+-.+.+..........+.. ..-+++..+ +..-.+.+.||||++.|..|+..-.+-+|++|||.+++|
T Consensus        11 mGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dD   90 (509)
T COG0532          11 MGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADD   90 (509)
T ss_pred             eCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccC
Confidence            588889999999999887665443333331 224444443 122357889999999999999999999999999999987


Q ss_pred             h---hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC---------Cc
Q psy1873          79 H---KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK---------AG  146 (157)
Q Consensus        79 ~---~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~  146 (157)
                      .   +..+.+.        +.+.-.             +|++|+.||+|..+..+   .....-..++|         ..
T Consensus        91 Gv~pQTiEAI~--------hak~a~-------------vP~iVAiNKiDk~~~np---~~v~~el~~~gl~~E~~gg~v~  146 (509)
T COG0532          91 GVMPQTIEAIN--------HAKAAG-------------VPIVVAINKIDKPEANP---DKVKQELQEYGLVPEEWGGDVI  146 (509)
T ss_pred             CcchhHHHHHH--------HHHHCC-------------CCEEEEEecccCCCCCH---HHHHHHHHHcCCCHhhcCCceE
Confidence            4   4444332        111112             99999999999864322   22222222222         57


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      ++.+||++|+|
T Consensus       147 ~VpvSA~tg~G  157 (509)
T COG0532         147 FVPVSAKTGEG  157 (509)
T ss_pred             EEEeeccCCCC
Confidence            99999999987

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.39  E-value=8.1e-12  Score=102.30  Aligned_cols=98  Identities=21%  Similarity=0.243  Sum_probs=67.0

Q ss_pred             CChhhhHhhhhccccccccc----CCccceEEEEEEECC----------------eEEEEEEEeCCCCccCcCchhhhcc
Q psy1873           6 VGKSSLSIQFVDGQFVDSYD----PTIENTFVKTTRMNN----------------QDYDLKLVDTAGQDEYSIFPAQYSM   65 (157)
Q Consensus         6 ~GKssli~~~~~~~~~~~~~----~t~~~~~~~~~~~~~----------------~~~~~~i~D~~g~~~~~~~~~~~~~   65 (157)
                      ++||||+.++.+........    ..+|..+   +..+.                +.-.+.+|||||++.|..+....+.
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~---v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~  548 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATE---IPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGS  548 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEE---EEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcc
Confidence            57999999998766643322    2333221   22211                0112789999999999988888888


Q ss_pred             CCCEEEEEEECCC---hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873          66 DIHGYVLVYSITS---HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM  127 (157)
Q Consensus        66 ~~~~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~  127 (157)
                      .+|++++|+|+++   +++++.+..     +...   .             +|+++++||+|+..
T Consensus       549 ~aDivlLVVDa~~Gi~~qT~e~I~~-----lk~~---~-------------iPiIVViNKiDL~~  592 (1049)
T PRK14845        549 LADLAVLVVDINEGFKPQTIEAINI-----LRQY---K-------------TPFVVAANKIDLIP  592 (1049)
T ss_pred             cCCEEEEEEECcccCCHhHHHHHHH-----HHHc---C-------------CCEEEEEECCCCcc
Confidence            9999999999987   555554431     1111   2             89999999999853

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.34  E-value=1.2e-11  Score=94.25  Aligned_cols=102  Identities=16%  Similarity=0.109  Sum_probs=65.1

Q ss_pred             CCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh---hH---HHHHHHHHHHHHHhccccCCCCCCCCCCCC
Q psy1873          39 NNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK---SF---EVVQILYDKLLDMTGKIQNSSVKSPTSCVS  112 (157)
Q Consensus        39 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  112 (157)
                      ......+.+.|+||+.+|.......+..+|++|+|.|.++..   .|   .+..+.+..+. ...               
T Consensus        81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~-~~g---------------  144 (446)
T PTZ00141         81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAF-TLG---------------  144 (446)
T ss_pred             ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHH-HcC---------------
Confidence            344567899999999998776667778999999999988642   11   12233333222 221               


Q ss_pred             CCc-EEEEEeCCCCCC--Cce----ecHHHHHHHHHHhC-----CcEEEeccccCCC
Q psy1873         113 SVP-IVLVGNKKDLHM--ERM----ISYDEGKRLAESWK-----AGFVEASAKQDDY  157 (157)
Q Consensus       113 ~~p-~~vv~nK~Dl~~--~~~----~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~  157 (157)
                       +| ++|+.||.|...  ..+    ...++...+....+     ++++.+||++|+|
T Consensus       145 -i~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~n  200 (446)
T PTZ00141        145 -VKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDN  200 (446)
T ss_pred             -CCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCC
Confidence             55 678999999532  111    11223333333333     6899999999987

>KOG0462|consensus

Probab=99.32  E-value=2.7e-11  Score=91.78  Aligned_cols=101  Identities=24%  Similarity=0.164  Sum_probs=75.7

Q ss_pred             CCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEE
Q psy1873          39 NNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL  118 (157)
Q Consensus        39 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~v  118 (157)
                      +++.+.+.++||||+-+|..-...-+..|+++||+.|.+..-.-+.+..++..+...                  ..++.
T Consensus       121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~------------------L~iIp  182 (650)
T KOG0462|consen  121 DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAG------------------LAIIP  182 (650)
T ss_pred             cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcC------------------CeEEE
Confidence            367799999999999999998888889999999999998766555555555444322                  67999


Q ss_pred             EEeCCCCCCCceec-HHHHHHHHHHhCCcEEEeccccCCC
Q psy1873         119 VGNKKDLHMERMIS-YDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus       119 v~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      |.||+|++..+.-. ..+...+....+.+.+.+|||+|.|
T Consensus       183 VlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~  222 (650)
T KOG0462|consen  183 VLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLN  222 (650)
T ss_pred             eeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCcc
Confidence            99999997654322 2333344444446899999999976

>PLN03127 Elongation factor Tu; Provisional

Probab=99.32  E-value=3.1e-11  Score=91.91  Aligned_cols=135  Identities=17%  Similarity=0.139  Sum_probs=76.4

Q ss_pred             CCCCCCChhhhHhhhhcc------cc------c----ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVDG------QF------V----DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYS   64 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~------~~------~----~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   64 (157)
                      +|..++|||||+++|.+.      ..      .    .+....+... .....+......+.+.|+||+.+|......-.
T Consensus        67 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~-~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~  145 (447)
T PLN03127         67 IGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA-TAHVEYETAKRHYAHVDCPGHADYVKNMITGA  145 (447)
T ss_pred             ECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee-eeEEEEcCCCeEEEEEECCCccchHHHHHHHH
Confidence            599999999999999632      10      0    0000111111 12223333445678999999988765444455


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCceecH---HHHHHHH
Q psy1873          65 MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERMISY---DEGKRLA  140 (157)
Q Consensus        65 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~~~~---~~~~~~~  140 (157)
                      ..+|++++|.|.++...- +..+.+..+ ...   .             +| ++++.||+|+.+......   .+...+.
T Consensus       146 ~~aD~allVVda~~g~~~-qt~e~l~~~-~~~---g-------------ip~iIvviNKiDlv~~~~~~~~i~~~i~~~l  207 (447)
T PLN03127        146 AQMDGGILVVSAPDGPMP-QTKEHILLA-RQV---G-------------VPSLVVFLNKVDVVDDEELLELVEMELRELL  207 (447)
T ss_pred             hhCCEEEEEEECCCCCch-hHHHHHHHH-HHc---C-------------CCeEEEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence            679999999998764321 122222222 222   1             78 578899999864322111   1222333


Q ss_pred             HHh-----CCcEEEecccc
Q psy1873         141 ESW-----KAGFVEASAKQ  154 (157)
Q Consensus       141 ~~~-----~~~~~e~Sa~~  154 (157)
                      ...     .++++.+||.+
T Consensus       208 ~~~~~~~~~vpiip~Sa~s  226 (447)
T PLN03127        208 SFYKFPGDEIPIIRGSALS  226 (447)
T ss_pred             HHhCCCCCcceEEEeccce
Confidence            322     36888888863

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.32  E-value=2.4e-11  Score=92.47  Aligned_cols=154  Identities=16%  Similarity=0.142  Sum_probs=98.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEE-EEEEC--CeEEEEEEEeCCCCccCcCchhhhccCC----CEEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVK-TTRMN--NQDYDLKLVDTAGQDEYSIFPAQYSMDI----HGYVLV   73 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~----~~~ilv   73 (157)
                      +|+.++|||||+.+|.+.   +.+.++.+-.|.+ .+.-+  +...++.+|-..|...+..+.+..+...    -.+|+|
T Consensus        31 lG~~~~GKttli~~L~~~---e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIv  107 (472)
T PF05783_consen   31 LGDKGSGKTTLIARLQGI---EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIV  107 (472)
T ss_pred             EeCCCCchHHHHHHhhcc---CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEEEE
Confidence            699999999999998653   2344566645522 22211  2245789999998877877776665543    268889


Q ss_pred             EECCChhhH-HHHHHHHHHHHHHhccc-------------------------cCC---C-------C---C---------
Q psy1873          74 YSITSHKSF-EVVQILYDKLLDMTGKI-------------------------QNS---S-------V---K---------  105 (157)
Q Consensus        74 ~d~~~~~s~-~~~~~~~~~i~~~~~~~-------------------------~~~---~-------~---~---------  105 (157)
                      .|++.|..+ +.+..|+.-+.++...-                         .+.   +       .   .         
T Consensus       108 lDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~  187 (472)
T PF05783_consen  108 LDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLG  187 (472)
T ss_pred             ecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccccCCCC
Confidence            999999774 45566555443322210                         000   0       0   0         


Q ss_pred             -CCCCCCCCCcEEEEEeCCCCCC----Cce-------ecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873         106 -SPTSCVSSVPIVLVGNKKDLHM----ERM-------ISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus       106 -~~~~~~~~~p~~vv~nK~Dl~~----~~~-------~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                       ..-..+.++|++||++|+|...    +..       +.....+.+|-.+|+..+.||+++..|
T Consensus       188 ~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n  251 (472)
T PF05783_consen  188 EGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKN  251 (472)
T ss_pred             CcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeecccccc
Confidence             0012345799999999999631    111       122236889999999999999988754

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK12740 elongation factor G; Reviewed

Probab=99.30  E-value=2.4e-11  Score=96.97  Aligned_cols=123  Identities=18%  Similarity=0.158  Sum_probs=78.0

Q ss_pred             CCCCCCChhhhHhhhhccccc----ccc--------------cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV----DSY--------------DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPA   61 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~----~~~--------------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   61 (157)
                      ||..++|||||+++|+...-.    ...              ...+.... ...+..+  .+.+.+||+||+.++...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHHH
Confidence            799999999999999532110    000              00110001 2233333  47789999999998877778


Q ss_pred             hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873          62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE  141 (157)
Q Consensus        62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~  141 (157)
                      ..+..+|++++++|.++....+... .+..+...    .             +|+++++||+|+....  .......+..
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~-~~~~~~~~----~-------------~p~iiv~NK~D~~~~~--~~~~~~~l~~  138 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTET-VWRQAEKY----G-------------VPRIIFVNKMDRAGAD--FFRVLAQLQE  138 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHH-HHHHHHHc----C-------------CCEEEEEECCCCCCCC--HHHHHHHHHH
Confidence            8889999999999998876554432 22222221    2             8999999999986432  2233444545


Q ss_pred             HhCC
Q psy1873         142 SWKA  145 (157)
Q Consensus       142 ~~~~  145 (157)
                      .++.
T Consensus       139 ~l~~  142 (668)
T PRK12740        139 KLGA  142 (668)
T ss_pred             HHCC
Confidence            5554

>KOG1145|consensus

Probab=99.30  E-value=3.2e-11  Score=91.45  Aligned_cols=134  Identities=20%  Similarity=0.190  Sum_probs=89.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEE-CCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRM-NNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   78 (157)
                      ||.-.-|||||+..|.+..........+..-. -..+.. +|  -.+.+.||||+..|..|+..--..+|+++||...+|
T Consensus       159 MGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadD  236 (683)
T KOG1145|consen  159 MGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG--KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADD  236 (683)
T ss_pred             eecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC--CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccC
Confidence            57788899999999988766433322222111 223333 44  457889999999999999999999999999998887


Q ss_pred             hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHH-------HHHhC--CcEEE
Q psy1873          79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRL-------AESWK--AGFVE  149 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~~e  149 (157)
                      .---+.+    +.|...... .             +|++|+.||+|.+...   .+...+-       +..+|  .++++
T Consensus       237 GVmpQT~----EaIkhAk~A-~-------------VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvip  295 (683)
T KOG1145|consen  237 GVMPQTL----EAIKHAKSA-N-------------VPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIP  295 (683)
T ss_pred             CccHhHH----HHHHHHHhc-C-------------CCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEE
Confidence            4322221    112222222 2             9999999999975432   2222222       23344  58999


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      +||++|+|
T Consensus       296 iSAl~g~n  303 (683)
T KOG1145|consen  296 ISALTGEN  303 (683)
T ss_pred             eecccCCC
Confidence            99999997

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.29  E-value=8.2e-12  Score=100.11  Aligned_cols=108  Identities=20%  Similarity=0.224  Sum_probs=72.7

Q ss_pred             CCCCCCChhhhHhhhhcc---------------ccccc---ccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchh
Q psy1873           1 MGYRSVGKSSLSIQFVDG---------------QFVDS---YDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPA   61 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~---------------~~~~~---~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   61 (157)
                      ||..++|||||+.+|+..               .+...   +..|+.... ......++..+.+.+|||||+.+|.....
T Consensus        25 vGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~  104 (720)
T TIGR00490        25 VAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVT  104 (720)
T ss_pred             EEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccHHHHH
Confidence            689999999999999742               11111   112333222 22334566778899999999999988888


Q ss_pred             hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873          62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH  126 (157)
Q Consensus        62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~  126 (157)
                      ..++.+|++|+|+|..+.-..+.. ..+.....    ..             .|+++++||.|..
T Consensus       105 ~al~~aD~~llVvda~~g~~~~t~-~~~~~~~~----~~-------------~p~ivviNKiD~~  151 (720)
T TIGR00490       105 RAMRAVDGAIVVVCAVEGVMPQTE-TVLRQALK----EN-------------VKPVLFINKVDRL  151 (720)
T ss_pred             HHHHhcCEEEEEEecCCCCCccHH-HHHHHHHH----cC-------------CCEEEEEEChhcc
Confidence            889999999999998874322221 11222211    11             7888999999974

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.25  E-value=8.2e-10  Score=75.56  Aligned_cols=135  Identities=16%  Similarity=0.149  Sum_probs=75.6

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccc---cCCccceEEEEEEECCeEEEEEEEeCCCCccCcC--------c---hhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSY---DPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI--------F---PAQYSM   65 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~---~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~---~~~~~~   65 (157)
                      ||.+|||||||+|.+++.+.. ...   ..|... ......+++  ..+.++||||-.....        +   ......
T Consensus         6 vG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~-~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~   82 (196)
T cd01852           6 VGKTGAGKSATGNTILGREVFESKLSASSVTKTC-QKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAP   82 (196)
T ss_pred             ECCCCCCHHHHHHHhhCCCccccccCCCCccccc-ceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHHhcCC
Confidence            699999999999999987543 221   122221 123334455  4578999999654421        1   112245


Q ss_pred             CCCEEEEEEECCChh-hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec------HHHHHH
Q psy1873          66 DIHGYVLVYSITSHK-SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS------YDEGKR  138 (157)
Q Consensus        66 ~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~------~~~~~~  138 (157)
                      +.+++|+|.++.+.. ....+.+++.++......               .+++++.|++|......+.      ....+.
T Consensus        83 g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~---------------~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~  147 (196)
T cd01852          83 GPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVL---------------DHTIVLFTRGDDLEGGTLEDYLENSCEALKR  147 (196)
T ss_pred             CCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhH---------------hcEEEEEECccccCCCcHHHHHHhccHHHHH
Confidence            789999999987622 122233333333221111               5688999999964432111      123444


Q ss_pred             HHHHhCCcEEEeccc
Q psy1873         139 LAESWKAGFVEASAK  153 (157)
Q Consensus       139 ~~~~~~~~~~e~Sa~  153 (157)
                      +.+..+--|+..+.+
T Consensus       148 l~~~c~~r~~~f~~~  162 (196)
T cd01852         148 LLEKCGGRYVAFNNK  162 (196)
T ss_pred             HHHHhCCeEEEEeCC
Confidence            555555555555543

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PTZ00258 GTP-binding protein; Provisional

Probab=99.24  E-value=9.2e-11  Score=87.35  Aligned_cols=77  Identities=16%  Similarity=0.138  Sum_probs=49.9

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCCccceEEEEEEECCe---------------EEEEEEEeCCCCccCc----Cch
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTFVKTTRMNNQ---------------DYDLKLVDTAGQDEYS----IFP   60 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~----~~~   60 (157)
                      ||.||||||||+|++.+.... ..+..|+.+.....+.+.+.               ...+++.|+||-..-.    .+.
T Consensus        27 VG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg  106 (390)
T PTZ00258         27 VGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLG  106 (390)
T ss_pred             ECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHH
Confidence            699999999999999876653 34444443333333343322               2358999999954221    222


Q ss_pred             hh---hccCCCEEEEEEECC
Q psy1873          61 AQ---YSMDIHGYVLVYSIT   77 (157)
Q Consensus        61 ~~---~~~~~~~~ilv~d~~   77 (157)
                      ..   .++.+|++++|.|..
T Consensus       107 ~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258        107 NAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             HHHHHHHHHCCEEEEEEeCC
Confidence            22   356799999999974

>KOG1490|consensus

Probab=99.24  E-value=2.5e-11  Score=91.13  Aligned_cols=140  Identities=18%  Similarity=0.152  Sum_probs=91.5

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCccC--cCchhhhc------c-CCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY--SIFPAQYS------M-DIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~~~~------~-~~~~~   70 (157)
                      .|.|+||||||++.+..... ...|..|+...|..++.+.  ...+++.||||--+.  .......+      . =-.++
T Consensus       174 cG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dyk--YlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaV  251 (620)
T KOG1490|consen  174 CGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYK--YLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAV  251 (620)
T ss_pred             ecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhh--eeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhh
Confidence            48999999999999998877 4567667665555554443  356789999994321  11111111      1 11357


Q ss_pred             EEEEECCCh--hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHH---HHHHHhCC
Q psy1873          71 VLVYSITSH--KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGK---RLAESWKA  145 (157)
Q Consensus        71 ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~---~~~~~~~~  145 (157)
                      +++-|++..  -|+.+-...+..|......               .|+++|.||+|+.....++.+...   .+...-++
T Consensus       252 LYfmDLSe~CGySva~QvkLfhsIKpLFaN---------------K~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v  316 (620)
T KOG1490|consen  252 LYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---------------KVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNV  316 (620)
T ss_pred             eeeeechhhhCCCHHHHHHHHHHhHHHhcC---------------CceEEEeecccccCccccCHHHHHHHHHHHhccCc
Confidence            888898864  3444444444444444333               889999999999776666655533   33344458


Q ss_pred             cEEEeccccCCC
Q psy1873         146 GFVEASAKQDDY  157 (157)
Q Consensus       146 ~~~e~Sa~~~~~  157 (157)
                      +++++|+.+.+|
T Consensus       317 ~v~~tS~~~eeg  328 (620)
T KOG1490|consen  317 KVVQTSCVQEEG  328 (620)
T ss_pred             eEEEecccchhc
Confidence            999999998876

>KOG0705|consensus

Probab=99.23  E-value=2.4e-11  Score=92.12  Aligned_cols=138  Identities=22%  Similarity=0.409  Sum_probs=108.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||..++|||+|+.|++.+.|.... .+.+..|++.+.++++...+.+.|.+|...     ..|..++|++|++|.+.+..
T Consensus        36 vg~~~sgktalvhr~ltgty~~~e-~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf~~~d~~  109 (749)
T KOG0705|consen   36 VGTSQSGKTALVHRYLTGTYTQDE-SPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVFSVEDEQ  109 (749)
T ss_pred             eecccCCceeeeeeeccceecccc-CCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEEEEecccc
Confidence            699999999999999998887554 344567889999999999999999998443     56778899999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC--CCceecHHHHHHHHHHh-CCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH--MERMISYDEGKRLAESW-KAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~  157 (157)
                      +|+.+......+.......             .+|+++++++.-..  ..+.+...++.+++..+ .+.||+++|.+|.|
T Consensus       110 s~q~v~~l~~~l~~~r~r~-------------~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGln  176 (749)
T KOG0705|consen  110 SFQAVQALAHEMSSYRNIS-------------DLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLN  176 (749)
T ss_pred             CHHHHHHHHhhcccccccc-------------cchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhh
Confidence            9999988777765544433             39999999875543  34455556666655554 48999999988864

>PRK12739 elongation factor G; Reviewed

Probab=99.22  E-value=9.7e-11  Score=93.72  Aligned_cols=108  Identities=17%  Similarity=0.167  Sum_probs=70.6

Q ss_pred             CCCCCCChhhhHhhhhcccc----ccc--------------ccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCchh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF----VDS--------------YDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA   61 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~----~~~--------------~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   61 (157)
                      ||..++|||||+++|+...-    ...              ....+. ......+.+++  ..+.++||||+.+|.....
T Consensus        14 iGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~~f~~e~~   91 (691)
T PRK12739         14 MAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGHVDFTIEVE   91 (691)
T ss_pred             ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCHHHHHHHHH
Confidence            69999999999999974210    000              011111 11133334444  5678999999988877788


Q ss_pred             hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q psy1873          62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME  128 (157)
Q Consensus        62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~  128 (157)
                      ..+..+|++|+|+|.++...-+.. ..+..+..    ..             +|++++.||+|+...
T Consensus        92 ~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~----~~-------------~p~iv~iNK~D~~~~  140 (691)
T PRK12739         92 RSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK----YG-------------VPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH----cC-------------CCEEEEEECCCCCCC
Confidence            889999999999999876433222 22222221    12             899999999998653

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.19  E-value=4e-10  Score=81.32  Aligned_cols=117  Identities=16%  Similarity=0.187  Sum_probs=64.6

Q ss_pred             CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhh-------hc--cCCCE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQ-------YS--MDIHG   69 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-------~~--~~~~~   69 (157)
                      ||.+||||||++|++++....  ....++...........++  ..+.++||||..+.......       ++  ...|+
T Consensus        44 vGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~Dv  121 (313)
T TIGR00991        44 MGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDV  121 (313)
T ss_pred             ECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCE
Confidence            699999999999999987642  2222221111112223344  56899999997654322111       11  25789


Q ss_pred             EEEEEECCChhhHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec
Q psy1873          70 YVLVYSITSHKSFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS  132 (157)
Q Consensus        70 ~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~  132 (157)
                      +|+|..++.. .+... ...++.+........            -.+++|+.|++|..+....+
T Consensus       122 VLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~i------------w~~~IVVfTh~d~~~pd~~~  172 (313)
T TIGR00991       122 LLYVDRLDAY-RVDTLDGQVIRAITDSFGKDI------------WRKSLVVLTHAQFSPPDGLE  172 (313)
T ss_pred             EEEEeccCcc-cCCHHHHHHHHHHHHHhhhhh------------hccEEEEEECCccCCCCCCC
Confidence            9999665532 12222 223333333221110            05689999999976433333

>PRK00007 elongation factor G; Reviewed

Probab=99.19  E-value=2e-10  Score=91.99  Aligned_cols=133  Identities=17%  Similarity=0.197  Sum_probs=79.6

Q ss_pred             CCCCCCChhhhHhhhhc--ccc--ccc--------------ccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCchh
Q psy1873           1 MGYRSVGKSSLSIQFVD--GQF--VDS--------------YDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA   61 (157)
Q Consensus         1 vG~~~~GKssli~~~~~--~~~--~~~--------------~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   61 (157)
                      +|.+++|||||+++|+.  +..  ...              ....+. ......+.++  ...+.+.||||+.+|..-..
T Consensus        16 iG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG~~~f~~ev~   93 (693)
T PRK00007         16 MAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPGHVDFTIEVE   93 (693)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCCcHHHHHHHH
Confidence            69999999999999973  111  000              011111 1112333444  45788999999988766566


Q ss_pred             hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873          62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE  141 (157)
Q Consensus        62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~  141 (157)
                      ..+..+|++++|+|....-.-+.. ..+..+...    .             .|++++.||+|+....  .......+..
T Consensus        94 ~al~~~D~~vlVvda~~g~~~qt~-~~~~~~~~~----~-------------~p~iv~vNK~D~~~~~--~~~~~~~i~~  153 (693)
T PRK00007         94 RSLRVLDGAVAVFDAVGGVEPQSE-TVWRQADKY----K-------------VPRIAFVNKMDRTGAD--FYRVVEQIKD  153 (693)
T ss_pred             HHHHHcCEEEEEEECCCCcchhhH-HHHHHHHHc----C-------------CCEEEEEECCCCCCCC--HHHHHHHHHH
Confidence            677889999999998765433322 222222222    2             8899999999986533  1222333334


Q ss_pred             HhCC----cEEEeccccC
Q psy1873         142 SWKA----GFVEASAKQD  155 (157)
Q Consensus       142 ~~~~----~~~e~Sa~~~  155 (157)
                      .++.    ..+.+||..+
T Consensus       154 ~l~~~~~~~~ipisa~~~  171 (693)
T PRK00007        154 RLGANPVPIQLPIGAEDD  171 (693)
T ss_pred             HhCCCeeeEEecCccCCc
Confidence            4442    3456666654

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.19  E-value=4.6e-10  Score=82.84  Aligned_cols=77  Identities=19%  Similarity=0.159  Sum_probs=49.5

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCCccceEEEEEEECCe---------------EEEEEEEeCCCCccCc----Cch
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTFVKTTRMNNQ---------------DYDLKLVDTAGQDEYS----IFP   60 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~----~~~   60 (157)
                      ||.||||||||+|++++.... ..|..|+.+.....+.+.+.               ...+.+.|+||-..-.    .+.
T Consensus         8 VG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg   87 (364)
T PRK09601          8 VGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLG   87 (364)
T ss_pred             ECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCChHHHHH
Confidence            699999999999999987642 34444443322333333331               1358999999954321    222


Q ss_pred             hh---hccCCCEEEEEEECC
Q psy1873          61 AQ---YSMDIHGYVLVYSIT   77 (157)
Q Consensus        61 ~~---~~~~~~~~ilv~d~~   77 (157)
                      ..   .++.+|++++|.|..
T Consensus        88 ~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         88 NQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHhCCEEEEEEeCC
Confidence            22   357899999999974

>PRK09866 hypothetical protein; Provisional

Probab=99.17  E-value=7.9e-10  Score=86.13  Aligned_cols=98  Identities=20%  Similarity=0.128  Sum_probs=60.2

Q ss_pred             EEEEEeCCCCccC-cC----chhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEE
Q psy1873          44 DLKLVDTAGQDEY-SI----FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL  118 (157)
Q Consensus        44 ~~~i~D~~g~~~~-~~----~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~v  118 (157)
                      .+.+.||||-..- ..    .....+..+|++++|.|.++.-+...  ..+.+.+......              .|+++
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~K~--------------~PVIL  294 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVGQS--------------VPLYV  294 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcCCC--------------CCEEE
Confidence            4567899997542 11    23346889999999999987533322  1222222222211              59999


Q ss_pred             EEeCCCCCCCceecHHHHHHHHHH----hC---CcEEEeccccCCC
Q psy1873         119 VGNKKDLHMERMISYDEGKRLAES----WK---AGFVEASAKQDDY  157 (157)
Q Consensus       119 v~nK~Dl~~~~~~~~~~~~~~~~~----~~---~~~~e~Sa~~~~~  157 (157)
                      |.||+|+.+......+....+...    .+   ..+|.+||++|.|
T Consensus       295 VVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~n  340 (741)
T PRK09866        295 LVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYL  340 (741)
T ss_pred             EEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCC
Confidence            999999854333233444444321    12   2699999999986

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.17  E-value=1.2e-10  Score=88.71  Aligned_cols=98  Identities=16%  Similarity=0.149  Sum_probs=62.4

Q ss_pred             EEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCC
Q psy1873          44 DLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKK  123 (157)
Q Consensus        44 ~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~  123 (157)
                      .+.+.|+||+++|-...-.-...+|++++|.|.++...-.+..+.+ .+.....-               .|++|+.||+
T Consensus       118 ~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~lgi---------------~~iIVvlNKi  181 (460)
T PTZ00327        118 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVEIMKL---------------KHIIILQNKI  181 (460)
T ss_pred             eEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHHHcCC---------------CcEEEEEecc
Confidence            5789999999988765555667889999999998742111122222 22222221               5689999999


Q ss_pred             CCCCCcee--cHHHHHHHHHH---hCCcEEEeccccCCC
Q psy1873         124 DLHMERMI--SYDEGKRLAES---WKAGFVEASAKQDDY  157 (157)
Q Consensus       124 Dl~~~~~~--~~~~~~~~~~~---~~~~~~e~Sa~~~~~  157 (157)
                      |+.+....  ..++...+...   .+.+++.+||++|+|
T Consensus       182 Dlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~n  220 (460)
T PTZ00327        182 DLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYN  220 (460)
T ss_pred             cccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCC
Confidence            98643221  11222333222   257999999999987

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.17  E-value=5.5e-10  Score=83.72  Aligned_cols=99  Identities=22%  Similarity=0.208  Sum_probs=76.6

Q ss_pred             CCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEE
Q psy1873          39 NNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL  118 (157)
Q Consensus        39 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~v  118 (157)
                      +++.|.+++.||||+-+|..-...-+..|.+.+|+.|.+..-.-+.+...+..+-..                  .-++-
T Consensus        72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~------------------LeIiP  133 (603)
T COG0481          72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN------------------LEIIP  133 (603)
T ss_pred             CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcC------------------cEEEE
Confidence            457899999999999999987777888999999999999876666666665554322                  55889


Q ss_pred             EEeCCCCCCCceecHHHHHHHHHHhCC---cEEEeccccCCC
Q psy1873         119 VGNKKDLHMERMISYDEGKRLAESWKA---GFVEASAKQDDY  157 (157)
Q Consensus       119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~e~Sa~~~~~  157 (157)
                      |.||+||+...  +..-..+..+-.|+   ..+.+|||+|.|
T Consensus       134 ViNKIDLP~Ad--pervk~eIe~~iGid~~dav~~SAKtG~g  173 (603)
T COG0481         134 VLNKIDLPAAD--PERVKQEIEDIIGIDASDAVLVSAKTGIG  173 (603)
T ss_pred             eeecccCCCCC--HHHHHHHHHHHhCCCcchheeEecccCCC
Confidence            99999996532  23445556666775   589999999986

>cd01900 YchF YchF subfamily

Probab=99.15  E-value=7.4e-10  Score=79.17  Aligned_cols=77  Identities=17%  Similarity=0.170  Sum_probs=49.7

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCCccceEEEEEEECCe---------------EEEEEEEeCCCCccC----cCch
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTFVKTTRMNNQ---------------DYDLKLVDTAGQDEY----SIFP   60 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~----~~~~   60 (157)
                      ||.||||||||+|++++.... ..|..|+-+.....+.+.+.               ...++++|+||-..-    ..+.
T Consensus         4 vG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg   83 (274)
T cd01900           4 VGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLG   83 (274)
T ss_pred             eCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHHH
Confidence            799999999999999987763 33444433322333344332               235899999995422    1232


Q ss_pred             hhh---ccCCCEEEEEEECC
Q psy1873          61 AQY---SMDIHGYVLVYSIT   77 (157)
Q Consensus        61 ~~~---~~~~~~~ilv~d~~   77 (157)
                      ..+   ++.+|++++|+|..
T Consensus        84 ~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          84 NKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHhCCEEEEEEeCc
Confidence            233   56799999999864

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>cd01882 BMS1 Bms1

Probab=99.13  E-value=7.2e-10  Score=77.45  Aligned_cols=130  Identities=14%  Similarity=0.065  Sum_probs=72.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|.+|+|||||++.+++..-........+.   ..+ .......+.++|++|..  ..+. ...+.+|++++++|.+...
T Consensus        45 vG~~~~GKstl~~~l~~~~~~~~~~~~~g~---i~i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllviDa~~~~  117 (225)
T cd01882          45 VGPPGVGKTTLIKSLVKNYTKQNISDIKGP---ITV-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLLLIDASFGF  117 (225)
T ss_pred             ECCCCCCHHHHHHHHHhhcccCcccccccc---EEE-EecCCceEEEEeCCchH--HHHH-HHHHhcCEEEEEEecCcCC
Confidence            699999999999999864211111111111   111 22244567899999854  2222 3357889999999987543


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcE-EEEEeCCCCCCCce-e--cHHHHHH-HHHH--hCCcEEEeccc
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPI-VLVGNKKDLHMERM-I--SYDEGKR-LAES--WKAGFVEASAK  153 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~-~vv~nK~Dl~~~~~-~--~~~~~~~-~~~~--~~~~~~e~Sa~  153 (157)
                      ..+. ...+..+...    +             .|. ++|.||.|+..... .  ..++.+. +...  .+.+++.+||+
T Consensus       118 ~~~~-~~i~~~l~~~----g-------------~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~  179 (225)
T cd01882         118 EMET-FEFLNILQVH----G-------------FPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGI  179 (225)
T ss_pred             CHHH-HHHHHHHHHc----C-------------CCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeec
Confidence            3222 1222222111    1             664 55999999854322 1  1112222 3322  23689999998


Q ss_pred             cC
Q psy1873         154 QD  155 (157)
Q Consensus       154 ~~  155 (157)
                      +.
T Consensus       180 ~~  181 (225)
T cd01882         180 VH  181 (225)
T ss_pred             cC
Confidence            75

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.12  E-value=2e-09  Score=80.11  Aligned_cols=135  Identities=16%  Similarity=0.216  Sum_probs=81.4

Q ss_pred             CCCCCCChhhhHhhhhcccc----c-------------cccc----CCccceE--EEEEEE---CCeEEEEEEEeCCCCc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF----V-------------DSYD----PTIENTF--VKTTRM---NNQDYDLKLVDTAGQD   54 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~----~-------------~~~~----~t~~~~~--~~~~~~---~~~~~~~~i~D~~g~~   54 (157)
                      +|+.++|||||+++|.+.-.    .             +...    .|+...|  ...+.+   ++....+.+.||+|-.
T Consensus        23 vGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~  102 (492)
T TIGR02836        23 VGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYT  102 (492)
T ss_pred             EcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEECCCcc
Confidence            69999999999999988722    1             1111    2222222  122222   3455788999999843


Q ss_pred             cCcCc-----------------------------hhhhcc-CCCEEEEEE-ECC----ChhhHHHH-HHHHHHHHHHhcc
Q psy1873          55 EYSIF-----------------------------PAQYSM-DIHGYVLVY-SIT----SHKSFEVV-QILYDKLLDMTGK   98 (157)
Q Consensus        55 ~~~~~-----------------------------~~~~~~-~~~~~ilv~-d~~----~~~s~~~~-~~~~~~i~~~~~~   98 (157)
                      .-..+                             ....+. ++++.|+|. |.+    .++.+... .+++.++.+..  
T Consensus       103 v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~--  180 (492)
T TIGR02836       103 VKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELN--  180 (492)
T ss_pred             cCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcC--
Confidence            22211                             112233 778888887 664    23445444 45555554443  


Q ss_pred             ccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecccc
Q psy1873          99 IQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ  154 (157)
Q Consensus        99 ~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  154 (157)
                                     +|++++.||.|.....  ....+..+...++.+++.+|+..
T Consensus       181 ---------------kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~  219 (492)
T TIGR02836       181 ---------------KPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVES  219 (492)
T ss_pred             ---------------CCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHH
Confidence                           9999999999942221  34445566777888888888753

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PRK13768 GTPase; Provisional

Probab=99.12  E-value=1.5e-10  Score=82.18  Aligned_cols=71  Identities=27%  Similarity=0.136  Sum_probs=43.9

Q ss_pred             EEEEEeCCCCccCc---CchhhhccC-----CCEEEEEEECCChhhHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCC
Q psy1873          44 DLKLVDTAGQDEYS---IFPAQYSMD-----IHGYVLVYSITSHKSFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSV  114 (157)
Q Consensus        44 ~~~i~D~~g~~~~~---~~~~~~~~~-----~~~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  114 (157)
                      .+.+||+||+.+..   ..++.+++.     .+++++++|.+........ ..++......... .             .
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~-~-------------~  163 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRL-G-------------L  163 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHc-C-------------C
Confidence            57899999987643   344333332     7899999999754433322 2222222221111 2             9


Q ss_pred             cEEEEEeCCCCCCC
Q psy1873         115 PIVLVGNKKDLHME  128 (157)
Q Consensus       115 p~~vv~nK~Dl~~~  128 (157)
                      |+++|.||+|+...
T Consensus       164 ~~i~v~nK~D~~~~  177 (253)
T PRK13768        164 PQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEEEhHhhcCc
Confidence            99999999998654

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.09  E-value=2.1e-11  Score=85.67  Aligned_cols=70  Identities=26%  Similarity=0.068  Sum_probs=36.1

Q ss_pred             EEEEEeCCCCccCcCchhhhc--------cCCCEEEEEEECCChhhHHH-HHHHHHHHHHHhccccCCCCCCCCCCCCCC
Q psy1873          44 DLKLVDTAGQDEYSIFPAQYS--------MDIHGYVLVYSITSHKSFEV-VQILYDKLLDMTGKIQNSSVKSPTSCVSSV  114 (157)
Q Consensus        44 ~~~i~D~~g~~~~~~~~~~~~--------~~~~~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  114 (157)
                      .+.++|||||.++...+....        ...-+++++.|.....+... +..++..+.-..+..              .
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~--------------l  157 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLE--------------L  157 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHT--------------S
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCC--------------C
Confidence            678999999988776655543        33446777778664433221 222222222222222              9


Q ss_pred             cEEEEEeCCCCCC
Q psy1873         115 PIVLVGNKKDLHM  127 (157)
Q Consensus       115 p~~vv~nK~Dl~~  127 (157)
                      |.+.|.||+|+.+
T Consensus       158 P~vnvlsK~Dl~~  170 (238)
T PF03029_consen  158 PHVNVLSKIDLLS  170 (238)
T ss_dssp             EEEEEE--GGGS-
T ss_pred             CEEEeeeccCccc
Confidence            9999999999965

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.07  E-value=1.8e-09  Score=76.38  Aligned_cols=109  Identities=13%  Similarity=0.114  Sum_probs=62.0

Q ss_pred             CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC---c-------hhhhcc--C
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI---F-------PAQYSM--D   66 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~-------~~~~~~--~   66 (157)
                      ||.+|||||||+|++++....  ....++...........++  ..+.+|||||-.....   .       ...+++  .
T Consensus        37 vG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~  114 (249)
T cd01853          37 LGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKT  114 (249)
T ss_pred             ECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccC
Confidence            699999999999999987642  2222222222222333444  5679999999654421   1       112333  4


Q ss_pred             CCEEEEEEECCChh-hHH--HHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873          67 IHGYVLVYSITSHK-SFE--VVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH  126 (157)
Q Consensus        67 ~~~~ilv~d~~~~~-s~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~  126 (157)
                      .+++++|..++... ...  .+.+.+.......-  -             .+++||.||+|..
T Consensus       115 idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i--~-------------~~~ivV~T~~d~~  162 (249)
T cd01853         115 PDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSI--W-------------RNAIVVLTHAASS  162 (249)
T ss_pred             CCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhh--H-------------hCEEEEEeCCccC
Confidence            67777776665432 222  22333333222111  1             5699999999975

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.07  E-value=9.9e-10  Score=75.81  Aligned_cols=44  Identities=23%  Similarity=0.096  Sum_probs=31.7

Q ss_pred             CcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcEEEeccccCCC
Q psy1873         114 VPIVLVGNKKDLHMERMISYDEGKRLAESWK--AGFVEASAKQDDY  157 (157)
Q Consensus       114 ~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~  157 (157)
                      .|.++++||+|+.+.......+.....+..+  .+++++||++|+|
T Consensus       149 ~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~g  194 (207)
T TIGR00073       149 EADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEG  194 (207)
T ss_pred             hCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence            6789999999996543333344444444444  7999999999986

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd00066 G-alpha G protein alpha subunit

Probab=99.07  E-value=7.4e-10  Score=81.09  Aligned_cols=73  Identities=19%  Similarity=0.263  Sum_probs=59.4

Q ss_pred             eEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh----------hhHHHHHHHHHHHHHHhccccCCCCCCCCCC
Q psy1873          41 QDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH----------KSFEVVQILYDKLLDMTGKIQNSSVKSPTSC  110 (157)
Q Consensus        41 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  110 (157)
                      ..+.+.+||++||...+..|..++.+++++|+|.|+++-          ..+.+....+..+.....-.           
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~-----------  227 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA-----------  227 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc-----------
Confidence            357789999999999999999999999999999999974          45666666666666554322           


Q ss_pred             CCCCcEEEEEeCCCCC
Q psy1873         111 VSSVPIVLVGNKKDLH  126 (157)
Q Consensus       111 ~~~~p~~vv~nK~Dl~  126 (157)
                        .+|++|++||.|+.
T Consensus       228 --~~pill~~NK~D~f  241 (317)
T cd00066         228 --NTSIILFLNKKDLF  241 (317)
T ss_pred             --CCCEEEEccChHHH
Confidence              39999999999963

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>TIGR00101 ureG urease accessory protein UreG

Probab=99.04  E-value=2.4e-09  Score=73.44  Aligned_cols=90  Identities=16%  Similarity=0.114  Sum_probs=52.6

Q ss_pred             EEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeC
Q psy1873          43 YDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK  122 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK  122 (157)
                      ....+.++.|..--....+..   ++.+|.|+|+.+.++....  ..       ....             ..=++++||
T Consensus        92 ~D~iiIEt~G~~l~~~~~~~l---~~~~i~vvD~~~~~~~~~~--~~-------~qi~-------------~ad~~~~~k  146 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSPEL---ADLTIFVIDVAAGDKIPRK--GG-------PGIT-------------RSDLLVINK  146 (199)
T ss_pred             CCEEEEECCCCCcccccchhh---hCcEEEEEEcchhhhhhhh--hH-------hHhh-------------hccEEEEEh
Confidence            345567777743222222221   5779999999876663211  00       1100             233899999


Q ss_pred             CCCCCCceecHHHHHHHHHH--hCCcEEEeccccCCC
Q psy1873         123 KDLHMERMISYDEGKRLAES--WKAGFVEASAKQDDY  157 (157)
Q Consensus       123 ~Dl~~~~~~~~~~~~~~~~~--~~~~~~e~Sa~~~~~  157 (157)
                      +|+.+......+......+.  .+.+++++||++|+|
T Consensus       147 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~g  183 (199)
T TIGR00101       147 IDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEG  183 (199)
T ss_pred             hhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence            99964322233444444444  347999999999987

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=1.6e-09  Score=80.01  Aligned_cols=105  Identities=17%  Similarity=0.178  Sum_probs=68.0

Q ss_pred             ECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh---hH--HHHHHHHHHHHHHhccccCCCCCCCCCCCC
Q psy1873          38 MNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK---SF--EVVQILYDKLLDMTGKIQNSSVKSPTSCVS  112 (157)
Q Consensus        38 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  112 (157)
                      .....+.+.|.|+||+.+|-...-.-...+|+.|||.|..+.+   .|  +...+.+..+.....-              
T Consensus        80 fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi--------------  145 (428)
T COG5256          80 FETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGI--------------  145 (428)
T ss_pred             eecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCC--------------
Confidence            3344567999999998888765555566789999999998764   12  1112233333333332              


Q ss_pred             CCcEEEEEeCCCCCCCceecHH----HHHHHHHHhC-----CcEEEeccccCCC
Q psy1873         113 SVPIVLVGNKKDLHMERMISYD----EGKRLAESWK-----AGFVEASAKQDDY  157 (157)
Q Consensus       113 ~~p~~vv~nK~Dl~~~~~~~~~----~~~~~~~~~~-----~~~~e~Sa~~~~~  157 (157)
                       ..++|+.||.|+.+-++-..+    +...+.+..|     ++|+.+||.+|+|
T Consensus       146 -~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~N  198 (428)
T COG5256         146 -KQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDN  198 (428)
T ss_pred             -ceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCc
Confidence             558889999998753332222    2333445555     5699999999987

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.03  E-value=3.3e-10  Score=70.45  Aligned_cols=122  Identities=20%  Similarity=0.134  Sum_probs=78.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc----hhhhccCCCEEEEEEEC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF----PAQYSMDIHGYVLVYSI   76 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----~~~~~~~~~~~ilv~d~   76 (157)
                      ||..|+|||||++++.+....  |..|..      +.++.+    -..|++|.---...    .-....++|+++++-.+
T Consensus         7 vG~~gcGKTtL~q~L~G~~~l--ykKTQA------ve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a   74 (148)
T COG4917           7 VGQVGCGKTTLFQSLYGNDTL--YKKTQA------VEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA   74 (148)
T ss_pred             ecccccCchhHHHHhhcchhh--hcccce------eeccCc----cccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence            699999999999999765322  222222      122222    24788885322222    23345788999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEeccccC
Q psy1873          77 TSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVEASAKQD  155 (157)
Q Consensus        77 ~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~  155 (157)
                      +++++.-.     ..+....                ..|+|-+.+|.||.+...  ....++|..+-|. ++|++|+.++
T Consensus        75 nd~~s~f~-----p~f~~~~----------------~k~vIgvVTK~DLaed~d--I~~~~~~L~eaGa~~IF~~s~~d~  131 (148)
T COG4917          75 NDPESRFP-----PGFLDIG----------------VKKVIGVVTKADLAEDAD--ISLVKRWLREAGAEPIFETSAVDN  131 (148)
T ss_pred             cCccccCC-----ccccccc----------------ccceEEEEecccccchHh--HHHHHHHHHHcCCcceEEEeccCc
Confidence            99876311     1111111                166899999999976433  3567778888887 8999999987


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      .|
T Consensus       132 ~g  133 (148)
T COG4917         132 QG  133 (148)
T ss_pred             cc
Confidence            64

>smart00275 G_alpha G protein alpha subunit

Probab=99.01  E-value=2e-09  Score=79.49  Aligned_cols=72  Identities=14%  Similarity=0.163  Sum_probs=59.0

Q ss_pred             EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh----------hhHHHHHHHHHHHHHHhccccCCCCCCCCCCC
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH----------KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCV  111 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  111 (157)
                      ...+.+||.+|+...+..|..++.+++++|+|.|+++-          ..+++....+..+.....-.            
T Consensus       183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~------------  250 (342)
T smart00275      183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA------------  250 (342)
T ss_pred             CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc------------
Confidence            35679999999999999999999999999999999973          45666666777776554322            


Q ss_pred             CCCcEEEEEeCCCCC
Q psy1873         112 SSVPIVLVGNKKDLH  126 (157)
Q Consensus       112 ~~~p~~vv~nK~Dl~  126 (157)
                       .+|++|++||.|+.
T Consensus       251 -~~piil~~NK~D~~  264 (342)
T smart00275      251 -NTSIILFLNKIDLF  264 (342)
T ss_pred             -CCcEEEEEecHHhH
Confidence             39999999999974

Subunit of G proteins that contains the guanine nucleotide binding site

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.01  E-value=3.5e-10  Score=79.46  Aligned_cols=108  Identities=16%  Similarity=0.122  Sum_probs=69.4

Q ss_pred             CCCCCCChhhhHhhhhccccccccc--CCccceEEEEEEECCeEEEEEEEeCCCCcc-------CcCchhhhccCCCEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYD--PTIENTFVKTTRMNNQDYDLKLVDTAGQDE-------YSIFPAQYSMDIHGYV   71 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~~~~i   71 (157)
                      +|..|+|||||+|++.++.......  .+..........+++  -.+.+||+||-.+       ++.+...++...|.++
T Consensus        45 ~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL  122 (296)
T COG3596          45 MGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVL  122 (296)
T ss_pred             ecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHHhhhccEEE
Confidence            5899999999999998654432211  111111122223444  3478999998543       5556777888899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873          72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH  126 (157)
Q Consensus        72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~  126 (157)
                      ++.++.|+.-- --..++..+......               .|++++.|.+|..
T Consensus       123 ~l~~~~draL~-~d~~f~~dVi~~~~~---------------~~~i~~VtQ~D~a  161 (296)
T COG3596         123 WLIKADDRALG-TDEDFLRDVIILGLD---------------KRVLFVVTQADRA  161 (296)
T ss_pred             EeccCCCcccc-CCHHHHHHHHHhccC---------------ceeEEEEehhhhh
Confidence            99999887521 112344444444432               7799999999974

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=1.3e-08  Score=74.58  Aligned_cols=153  Identities=18%  Similarity=0.195  Sum_probs=90.1

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccC-CccceEEEEEE-----------EC----CeEEEEEEEeCCC----CccCcCc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDP-TIENTFVKTTR-----------MN----NQDYDLKLVDTAG----QDEYSIF   59 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~-t~~~~~~~~~~-----------~~----~~~~~~~i~D~~g----~~~~~~~   59 (157)
                      ||-||||||||.|.++..... ..|+. |+.........           +.    -....+.+.|.+|    ..+-+.+
T Consensus         8 VGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeGL   87 (372)
T COG0012           8 VGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGEGL   87 (372)
T ss_pred             ecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcccCCCc
Confidence            799999999999999987653 34443 33322211110           11    1245778999876    4555667


Q ss_pred             hhhh---ccCCCEEEEEEECCChh-------------hH------------HHHHHHHHHHHHHhcccc--C--------
Q psy1873          60 PAQY---SMDIHGYVLVYSITSHK-------------SF------------EVVQILYDKLLDMTGKIQ--N--------  101 (157)
Q Consensus        60 ~~~~---~~~~~~~ilv~d~~~~~-------------s~------------~~~~~~~~~i~~~~~~~~--~--------  101 (157)
                      ...|   ++.+|+++.|.+.....             .+            +.+.+-|.++........  +        
T Consensus        88 GNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~r~~k~a~~~~~~~k~~~~~l~  167 (372)
T COG0012          88 GNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGKKLDKELKEELS  167 (372)
T ss_pred             chHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            6665   46789999988866221             11            122222222222222111  0        


Q ss_pred             -------------CCCC-C-------------CCCCCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHHhCCcEEEeccc
Q psy1873         102 -------------SSVK-S-------------PTSCVSSVPIVLVGNKKDLHMERM-ISYDEGKRLAESWKAGFVEASAK  153 (157)
Q Consensus       102 -------------~~~~-~-------------~~~~~~~~p~~vv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~e~Sa~  153 (157)
                                   .... .             ....+...|+++++||.|...... --.+..++++...+.+++.+||+
T Consensus       168 ~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV~~sA~  247 (372)
T COG0012         168 LLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLANLNEYVKRLKELAAKENAEVVPVSAA  247 (372)
T ss_pred             HHHhHHHHHHhhhhhhcCCcccCCHHHHHHHHHhhhhhcCCeEEEEECCcccccchhHHHHHHHHHhhhcCCcEEEeeHH
Confidence                         0000 0             034467899999999999754322 11456777778888899999986

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.95  E-value=9.2e-09  Score=77.14  Aligned_cols=134  Identities=22%  Similarity=0.188  Sum_probs=88.5

Q ss_pred             CCChhhhHhhhhccccc------------ccc--cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCE
Q psy1873           5 SVGKSSLSIQFVDGQFV------------DSY--DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHG   69 (157)
Q Consensus         5 ~~GKssli~~~~~~~~~------------~~~--~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   69 (157)
                      --|||||+..++++.-.            +..  ....|.+. .+...++.+.+++.|.||||+.+|..-....++=+|+
T Consensus        15 DHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDg   94 (603)
T COG1217          15 DHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDG   94 (603)
T ss_pred             cCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcce
Confidence            35999999999864211            110  00111122 3333455556889999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHH------
Q psy1873          70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM-ISYDEGKRLAES------  142 (157)
Q Consensus        70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~-~~~~~~~~~~~~------  142 (157)
                      ++++.|..+..= -+.+..+++.++..                 .+-+||.||+|.+..++ .-.++...+...      
T Consensus        95 vlLlVDA~EGpM-PQTrFVlkKAl~~g-----------------L~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~de  156 (603)
T COG1217          95 VLLLVDASEGPM-PQTRFVLKKALALG-----------------LKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDE  156 (603)
T ss_pred             EEEEEEcccCCC-CchhhhHHHHHHcC-----------------CCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChh
Confidence            999999876432 23333444444443                 77788999999876443 223444444443      


Q ss_pred             -hCCcEEEeccccCC
Q psy1873         143 -WKAGFVEASAKQDD  156 (157)
Q Consensus       143 -~~~~~~e~Sa~~~~  156 (157)
                       +.+|++..||+.|.
T Consensus       157 QLdFPivYAS~~~G~  171 (603)
T COG1217         157 QLDFPIVYASARNGT  171 (603)
T ss_pred             hCCCcEEEeeccCce
Confidence             34799999999874

>PTZ00416 elongation factor 2; Provisional

Probab=98.93  E-value=3.1e-09  Score=86.68  Aligned_cols=108  Identities=18%  Similarity=0.142  Sum_probs=69.6

Q ss_pred             CCCCCCChhhhHhhhhcccc-cc-ccc-CCc-----------cceE---EEEEEEC--------CeEEEEEEEeCCCCcc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VD-SYD-PTI-----------ENTF---VKTTRMN--------NQDYDLKLVDTAGQDE   55 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~-~~~-~t~-----------~~~~---~~~~~~~--------~~~~~~~i~D~~g~~~   55 (157)
                      +|..++|||||+.+|+...- .. ... .+.           +...   ...+.++        ++.+.+.+.||||+.+
T Consensus        25 iGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~  104 (836)
T PTZ00416         25 IAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSPGHVD  104 (836)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCCCHHh
Confidence            69999999999999975211 00 000 000           0000   0112222        2256789999999999


Q ss_pred             CcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873          56 YSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH  126 (157)
Q Consensus        56 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~  126 (157)
                      |..-....++.+|++|+|+|.++.-..+. ...+..+....                 +|++++.||+|+.
T Consensus       105 f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~~~-----------------~p~iv~iNK~D~~  157 (836)
T PTZ00416        105 FSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQER-----------------IRPVLFINKVDRA  157 (836)
T ss_pred             HHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHHcC-----------------CCEEEEEEChhhh
Confidence            88777888899999999999887544332 23333333222                 8999999999985

>KOG3886|consensus

Probab=98.93  E-value=1.8e-09  Score=74.11  Aligned_cols=137  Identities=20%  Similarity=0.233  Sum_probs=82.1

Q ss_pred             CCCCCCChhhhHhhhhccc--cc-ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCc-----CchhhhccCCCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ--FV-DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS-----IFPAQYSMDIHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~--~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----~~~~~~~~~~~~~il   72 (157)
                      +|.+|+|||++-..+..+-  +. .....|++..+......++  ..+.+||++||+.+-     .-....+++++++|.
T Consensus        10 MGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn--l~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~   87 (295)
T KOG3886|consen   10 MGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN--LVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIY   87 (295)
T ss_pred             eccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh--heeehhccCCcHHHHHHHHhhcchhhheeheeeee
Confidence            6999999999865543221  11 1122333333222212222  457899999998543     245667899999999


Q ss_pred             EEECCChhhHHHH---HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc--eecH----HHHHHHHHHh
Q psy1873          73 VYSITSHKSFEVV---QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER--MISY----DEGKRLAESW  143 (157)
Q Consensus        73 v~d~~~~~s~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~--~~~~----~~~~~~~~~~  143 (157)
                      +||++..+--..+   +..++.++.+.+.               ..+.+...|.|+....  ....    ...+.+....
T Consensus        88 vFDves~e~~~D~~~yqk~Le~ll~~SP~---------------AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~  152 (295)
T KOG3886|consen   88 VFDVESREMEKDFHYYQKCLEALLQNSPE---------------AKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPL  152 (295)
T ss_pred             eeeccchhhhhhHHHHHHHHHHHHhcCCc---------------ceEEEEEeechhcccchHHHHHHHHHHHHHHhcccc
Confidence            9999987644333   4445555555433               7799999999996432  2211    1233334444


Q ss_pred             CCcEEEecccc
Q psy1873         144 KAGFVEASAKQ  154 (157)
Q Consensus       144 ~~~~~e~Sa~~  154 (157)
                      ++.++.+|-.+
T Consensus       153 ~~~~f~TsiwD  163 (295)
T KOG3886|consen  153 ECKCFPTSIWD  163 (295)
T ss_pred             cccccccchhh
Confidence            56777777544

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.92  E-value=1.6e-08  Score=73.48  Aligned_cols=98  Identities=18%  Similarity=0.128  Sum_probs=68.3

Q ss_pred             EEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeC
Q psy1873          43 YDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK  122 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK  122 (157)
                      -.|.+-||||+++|......--..||+.|++.|.- ..-.++.+ -+..|.....-               ..++|+.||
T Consensus        86 RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR-~Gvl~QTr-RHs~I~sLLGI---------------rhvvvAVNK  148 (431)
T COG2895          86 RKFIIADTPGHEQYTRNMATGASTADLAILLVDAR-KGVLEQTR-RHSFIASLLGI---------------RHVVVAVNK  148 (431)
T ss_pred             ceEEEecCCcHHHHhhhhhcccccccEEEEEEecc-hhhHHHhH-HHHHHHHHhCC---------------cEEEEEEee
Confidence            36789999999999876666667789999999973 22233332 23333333332               448888899


Q ss_pred             CCCCCCceec----HHHHHHHHHHhCC---cEEEeccccCCC
Q psy1873         123 KDLHMERMIS----YDEGKRLAESWKA---GFVEASAKQDDY  157 (157)
Q Consensus       123 ~Dl~~~~~~~----~~~~~~~~~~~~~---~~~e~Sa~~~~~  157 (157)
                      .||.+..+-.    .++...|+.++++   .++..||+.|+|
T Consensus       149 mDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDN  190 (431)
T COG2895         149 MDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDN  190 (431)
T ss_pred             ecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCc
Confidence            9998754432    2445678888885   699999999997

>PRK12289 GTPase RsgA; Reviewed

Probab=98.92  E-value=7e-09  Score=76.75  Aligned_cols=83  Identities=14%  Similarity=0.044  Sum_probs=58.6

Q ss_pred             CcCchhhhccCCCEEEEEEECCChh-hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHH
Q psy1873          56 YSIFPAQYSMDIHGYVLVYSITSHK-SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYD  134 (157)
Q Consensus        56 ~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~  134 (157)
                      ...+....+.++|.+++|+|+.++. +...+.+|+..+..    ..             +|++||+||+||......  .
T Consensus        79 ~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~-------------ip~ILVlNK~DLv~~~~~--~  139 (352)
T PRK12289         79 KTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TG-------------LEIVLCLNKADLVSPTEQ--Q  139 (352)
T ss_pred             ccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CC-------------CCEEEEEEchhcCChHHH--H
Confidence            3345555688999999999999876 55566777665521    12             999999999999643221  2


Q ss_pred             HHHHHHHHhCCcEEEeccccCCC
Q psy1873         135 EGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus       135 ~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .........|++++.+||++|+|
T Consensus       140 ~~~~~~~~~g~~v~~iSA~tg~G  162 (352)
T PRK12289        140 QWQDRLQQWGYQPLFISVETGIG  162 (352)
T ss_pred             HHHHHHHhcCCeEEEEEcCCCCC
Confidence            22233356788999999999976

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.90  E-value=6.3e-09  Score=75.24  Aligned_cols=79  Identities=15%  Similarity=0.040  Sum_probs=59.4

Q ss_pred             hhhhccCCCEEEEEEECCChh-hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHH
Q psy1873          60 PAQYSMDIHGYVLVYSITSHK-SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKR  138 (157)
Q Consensus        60 ~~~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~  138 (157)
                      .+..+.++|.+++|+|+.++. ++..+.+|+..+...    .             +|+++|+||+|+.+...  ......
T Consensus        72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~----~-------------ip~iIVlNK~DL~~~~~--~~~~~~  132 (287)
T cd01854          72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA----G-------------IEPVIVLTKADLLDDEE--EELELV  132 (287)
T ss_pred             ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc----C-------------CCEEEEEEHHHCCChHH--HHHHHH
Confidence            344588999999999999998 888888887765432    1             89999999999965421  122233


Q ss_pred             HHHHhCCcEEEeccccCCC
Q psy1873         139 LAESWKAGFVEASAKQDDY  157 (157)
Q Consensus       139 ~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +....+.+++.+||+++.|
T Consensus       133 ~~~~~g~~v~~vSA~~g~g  151 (287)
T cd01854         133 EALALGYPVLAVSAKTGEG  151 (287)
T ss_pred             HHHhCCCeEEEEECCCCcc
Confidence            3455788999999999975

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.88  E-value=4.3e-08  Score=71.29  Aligned_cols=77  Identities=18%  Similarity=0.073  Sum_probs=55.3

Q ss_pred             hccCCCEEEEEEECCChhhHHH-HHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873          63 YSMDIHGYVLVYSITSHKSFEV-VQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE  141 (157)
Q Consensus        63 ~~~~~~~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~  141 (157)
                      ...++|++++|+|++++..... +.+|+..+...    .             +|+++|+||+|+.+... ...+.....+
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~----~-------------ip~iIVlNK~DL~~~~~-~~~~~~~~~~  138 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN----G-------------IKPIIVLNKIDLLDDLE-EARELLALYR  138 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC----C-------------CCEEEEEEhHHcCCCHH-HHHHHHHHHH
Confidence            3588999999999998876544 46666554321    2             89999999999953322 1223444556


Q ss_pred             HhCCcEEEeccccCCC
Q psy1873         142 SWKAGFVEASAKQDDY  157 (157)
Q Consensus       142 ~~~~~~~e~Sa~~~~~  157 (157)
                      ..+++++++||++++|
T Consensus       139 ~~g~~v~~vSA~~g~g  154 (298)
T PRK00098        139 AIGYDVLELSAKEGEG  154 (298)
T ss_pred             HCCCeEEEEeCCCCcc
Confidence            6789999999999876

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.87  E-value=5.8e-09  Score=85.19  Aligned_cols=68  Identities=19%  Similarity=0.208  Sum_probs=51.9

Q ss_pred             eEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEE
Q psy1873          41 QDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG  120 (157)
Q Consensus        41 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~  120 (157)
                      ..+.+.++||||+.+|..-....++.+|++|+|+|..+.-..+.. ..|..+....                 +|++++.
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~~~~-----------------~p~i~~i  157 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALGER-----------------IRPVLTV  157 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHHHCC-----------------CCEEEEE
Confidence            357789999999999988778888999999999998876443332 2333333222                 8999999


Q ss_pred             eCCCCC
Q psy1873         121 NKKDLH  126 (157)
Q Consensus       121 nK~Dl~  126 (157)
                      ||+|..
T Consensus       158 NK~D~~  163 (843)
T PLN00116        158 NKMDRC  163 (843)
T ss_pred             ECCccc
Confidence            999985

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.85  E-value=1.3e-08  Score=67.72  Aligned_cols=63  Identities=22%  Similarity=0.290  Sum_probs=41.0

Q ss_pred             EEEEEeCCCCcc----CcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEE
Q psy1873          44 DLKLVDTAGQDE----YSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV  119 (157)
Q Consensus        44 ~~~i~D~~g~~~----~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv  119 (157)
                      .+.|+|+||-..    ...+...++..+|++|+|.+.+..-+-.....+ .+......                ..+++|
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l-~~~~~~~~----------------~~~i~V  164 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFL-KQMLDPDK----------------SRTIFV  164 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHH-HHHHTTTC----------------SSEEEE
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHH-HHHhcCCC----------------CeEEEE
Confidence            467899999643    235577788999999999999886554433332 22222222                458888


Q ss_pred             EeCC
Q psy1873         120 GNKK  123 (157)
Q Consensus       120 ~nK~  123 (157)
                      .||+
T Consensus       165 ~nk~  168 (168)
T PF00350_consen  165 LNKA  168 (168)
T ss_dssp             EE-G
T ss_pred             EcCC
Confidence            8884

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.83  E-value=4.3e-09  Score=77.86  Aligned_cols=104  Identities=16%  Similarity=0.104  Sum_probs=52.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCcc--ceE--EEEEEECCeEEEEEEEeCCCCccCcC-----chhhhccCCCEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE--NTF--VKTTRMNNQDYDLKLVDTAGQDEYSI-----FPAQYSMDIHGYV   71 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~--~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~~~~i   71 (157)
                      +|.+|+|||||||.|.+-.-.+.....+|  +..  ....... +.-.+.+||.||......     +...-+...|.+|
T Consensus        41 ~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fi  119 (376)
T PF05049_consen   41 TGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFI  119 (376)
T ss_dssp             EESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHccccccCEEE
Confidence            49999999999999975322211111111  111  1111111 212478999998543222     2233466779888


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCC
Q psy1873          72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDL  125 (157)
Q Consensus        72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl  125 (157)
                      ++.+    +.|....-++.+......                .|+++|-+|.|.
T Consensus       120 ii~s----~rf~~ndv~La~~i~~~g----------------K~fyfVRTKvD~  153 (376)
T PF05049_consen  120 IISS----ERFTENDVQLAKEIQRMG----------------KKFYFVRTKVDS  153 (376)
T ss_dssp             EEES----SS--HHHHHHHHHHHHTT-----------------EEEEEE--HHH
T ss_pred             EEeC----CCCchhhHHHHHHHHHcC----------------CcEEEEEecccc
Confidence            8755    345555555554444443                889999999995

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.80  E-value=1.7e-08  Score=81.53  Aligned_cols=108  Identities=20%  Similarity=0.222  Sum_probs=69.1

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccc----------c-------CCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSY----------D-------PTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPA   61 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~----------~-------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   61 (157)
                      +|..++|||||+.+++...- ....          .       -|+.... ......++..+.+.+.||||+.+|.....
T Consensus        26 igh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~~~~~  105 (731)
T PRK07560         26 IAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFGGDVT  105 (731)
T ss_pred             EEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChHHHHH
Confidence            58999999999999974211 0000          0       0011000 11112344567889999999999988788


Q ss_pred             hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873          62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH  126 (157)
Q Consensus        62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~  126 (157)
                      ..+..+|++|+|+|....-..+ ....+.......                 .|.+++.||.|..
T Consensus       106 ~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~~~-----------------~~~iv~iNK~D~~  152 (731)
T PRK07560        106 RAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALRER-----------------VKPVLFINKVDRL  152 (731)
T ss_pred             HHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHHcC-----------------CCeEEEEECchhh
Confidence            8889999999999987653322 222233322221                 6789999999974

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.80  E-value=3.3e-08  Score=72.57  Aligned_cols=91  Identities=16%  Similarity=0.212  Sum_probs=53.7

Q ss_pred             EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN  121 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n  121 (157)
                      .+.+.+.||+|...-...   ....+|.++++.+....+.++.+..   .+++                   ..-++|.|
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-------------------~aDIiVVN  202 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-------------------LADLIVIN  202 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-------------------hhheEEee
Confidence            467889999986532222   4567899999865444444443321   1111                   44589999


Q ss_pred             CCCCCCCcee--cHHHHHHHHHH-------hCCcEEEeccccCCC
Q psy1873         122 KKDLHMERMI--SYDEGKRLAES-------WKAGFVEASAKQDDY  157 (157)
Q Consensus       122 K~Dl~~~~~~--~~~~~~~~~~~-------~~~~~~e~Sa~~~~~  157 (157)
                      |+|+......  ...+.......       ...|++.+||++|+|
T Consensus       203 KaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~G  247 (332)
T PRK09435        203 KADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEG  247 (332)
T ss_pred             hhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCC
Confidence            9998653221  11122222221       125899999999986

>PRK12288 GTPase RsgA; Reviewed

Probab=98.78  E-value=3.8e-08  Score=72.80  Aligned_cols=76  Identities=14%  Similarity=0.107  Sum_probs=55.8

Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee-cHHHHHHHHHHh
Q psy1873          65 MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI-SYDEGKRLAESW  143 (157)
Q Consensus        65 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~-~~~~~~~~~~~~  143 (157)
                      .++|.+++|++.+...++..+.+|+..+..    ..             +|++||+||+|+.+.... ...+........
T Consensus       119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~-------------i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~  181 (347)
T PRK12288        119 ANIDQIVIVSAVLPELSLNIIDRYLVACET----LG-------------IEPLIVLNKIDLLDDEGRAFVNEQLDIYRNI  181 (347)
T ss_pred             EEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cC-------------CCEEEEEECccCCCcHHHHHHHHHHHHHHhC
Confidence            458999999999988899999999764421    11             899999999999653221 112233334566


Q ss_pred             CCcEEEeccccCCC
Q psy1873         144 KAGFVEASAKQDDY  157 (157)
Q Consensus       144 ~~~~~e~Sa~~~~~  157 (157)
                      +++++++||++++|
T Consensus       182 g~~v~~vSA~tg~G  195 (347)
T PRK12288        182 GYRVLMVSSHTGEG  195 (347)
T ss_pred             CCeEEEEeCCCCcC
Confidence            88999999999876

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.77  E-value=2.3e-08  Score=72.77  Aligned_cols=91  Identities=18%  Similarity=0.224  Sum_probs=50.9

Q ss_pred             EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN  121 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n  121 (157)
                      .+.+.|.||+|.....   ......+|.++++-.   +.+.+++......+.                   +.|.+++.|
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~---~~~~~el~~~~~~l~-------------------~~~~ivv~N  180 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTI---PGTGDDLQGIKAGLM-------------------EIADIYVVN  180 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEec---CCccHHHHHHHHHHh-------------------hhccEEEEE
Confidence            4777889998843211   224566777777733   333344433322221                   178899999


Q ss_pred             CCCCCCCceecHHH------HHHHHH---HhCCcEEEeccccCCC
Q psy1873         122 KKDLHMERMISYDE------GKRLAE---SWKAGFVEASAKQDDY  157 (157)
Q Consensus       122 K~Dl~~~~~~~~~~------~~~~~~---~~~~~~~e~Sa~~~~~  157 (157)
                      |+|+..........      ...+..   .++.+++.+||++|+|
T Consensus       181 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~G  225 (300)
T TIGR00750       181 KADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRG  225 (300)
T ss_pred             cccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCC
Confidence            99986532211100      011111   1224699999999986

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd01855 YqeH YqeH

Probab=98.77  E-value=1.9e-08  Score=68.48  Aligned_cols=81  Identities=22%  Similarity=0.059  Sum_probs=53.3

Q ss_pred             CcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHH
Q psy1873          56 YSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDE  135 (157)
Q Consensus        56 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~  135 (157)
                      +..++..+++.+|++++|+|++++..-     |...+....  ..             .|+++|+||+|+... ......
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~--~~-------------~~~ilV~NK~Dl~~~-~~~~~~   82 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG--GN-------------NPVILVGNKIDLLPK-DKNLVR   82 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc--CC-------------CcEEEEEEchhcCCC-CCCHHH
Confidence            566788899999999999999876421     222221111  11             899999999998643 222333


Q ss_pred             HHHHH-----HHhCC---cEEEeccccCCC
Q psy1873         136 GKRLA-----ESWKA---GFVEASAKQDDY  157 (157)
Q Consensus       136 ~~~~~-----~~~~~---~~~e~Sa~~~~~  157 (157)
                      ...+.     +..++   .++.+||++|+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~i~~vSA~~~~g  112 (190)
T cd01855          83 IKNWLRAKAAAGLGLKPKDVILISAKKGWG  112 (190)
T ss_pred             HHHHHHHHHHhhcCCCcccEEEEECCCCCC
Confidence            33343     23343   689999999986

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01859 MJ1464 MJ1464

Probab=98.71  E-value=1.8e-08  Score=66.43  Aligned_cols=80  Identities=16%  Similarity=0.063  Sum_probs=51.1

Q ss_pred             CchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHH
Q psy1873          58 IFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGK  137 (157)
Q Consensus        58 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~  137 (157)
                      .+....++++|++++|+|.+++...+..  .+......   ..             .|+++|+||+|+.+....  ....
T Consensus         4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~---~~-------------~p~iiv~NK~Dl~~~~~~--~~~~   63 (156)
T cd01859           4 RLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLE---LG-------------KKLLIVLNKADLVPKEVL--EKWK   63 (156)
T ss_pred             HHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHh---CC-------------CcEEEEEEhHHhCCHHHH--HHHH
Confidence            4566778889999999999876432221  11111111   12             899999999998542221  1111


Q ss_pred             HHHHHhCCcEEEeccccCCC
Q psy1873         138 RLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus       138 ~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+....+.+++.+||++++|
T Consensus        64 ~~~~~~~~~~~~iSa~~~~g   83 (156)
T cd01859          64 SIKESEGIPVVYVSAKERLG   83 (156)
T ss_pred             HHHHhCCCcEEEEEcccccc
Confidence            33444567899999999876

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.71  E-value=1.2e-07  Score=65.70  Aligned_cols=136  Identities=15%  Similarity=0.137  Sum_probs=70.7

Q ss_pred             CCCCCCChhhhHhhhhccccccccc---CCccceEEEEEEECCeEEEEEEEeCCCCccCcCc----h-------hhhccC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYD---PTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF----P-------AQYSMD   66 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----~-------~~~~~~   66 (157)
                      ||..|+||||++|.+++...-....   +.+.........+++..  +.++||||-.+....    .       .....+
T Consensus         6 lG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g   83 (212)
T PF04548_consen    6 LGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPG   83 (212)
T ss_dssp             ECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-
T ss_pred             ECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHHhccCC
Confidence            6999999999999999876532221   11112223444677744  688999995322211    1       112356


Q ss_pred             CCEEEEEEECCChhh-HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee----c---HHHHHH
Q psy1873          67 IHGYVLVYSITSHKS-FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI----S---YDEGKR  138 (157)
Q Consensus        67 ~~~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~----~---~~~~~~  138 (157)
                      .+++|+|+.++.... -..+..++..+....-.               .-++|+.|..|......+    .   ....+.
T Consensus        84 ~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~---------------k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~  148 (212)
T PF04548_consen   84 PHAFLLVIPLGRFTEEDREVLELLQEIFGEEIW---------------KHTIVVFTHADELEDDSLEDYLKKESNEALQE  148 (212)
T ss_dssp             ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGG---------------GGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEEecCcchHHHHHHHHHHHHHccHHHH---------------hHhhHHhhhccccccccHHHHHhccCchhHhH
Confidence            799999999883221 12223344444332211               347888888886544331    1   112334


Q ss_pred             HHHHhCCcEEEeccc
Q psy1873         139 LAESWKAGFVEASAK  153 (157)
Q Consensus       139 ~~~~~~~~~~e~Sa~  153 (157)
                      +.+..+-.|...+.+
T Consensus       149 li~~c~~R~~~f~n~  163 (212)
T PF04548_consen  149 LIEKCGGRYHVFNNK  163 (212)
T ss_dssp             HHHHTTTCEEECCTT
T ss_pred             HhhhcCCEEEEEecc
Confidence            455555556555443

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.71  E-value=3.7e-08  Score=70.71  Aligned_cols=44  Identities=16%  Similarity=0.044  Sum_probs=31.1

Q ss_pred             CcEEEEEeCCCCCCCceecHHHHHHHHHHh--CCcEEEeccccCCC
Q psy1873         114 VPIVLVGNKKDLHMERMISYDEGKRLAESW--KAGFVEASAKQDDY  157 (157)
Q Consensus       114 ~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~e~Sa~~~~~  157 (157)
                      .+-++|.||+|+.+......+......+..  .++++++||++|+|
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeG  276 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEG  276 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCC
Confidence            678999999999653222334444444444  47999999999986

>KOG0458|consensus

Probab=98.69  E-value=2.8e-07  Score=70.84  Aligned_cols=105  Identities=18%  Similarity=0.137  Sum_probs=69.2

Q ss_pred             EECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHH---H---HHHHHHHHHHhccccCCCCCCCCCC
Q psy1873          37 RMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEV---V---QILYDKLLDMTGKIQNSSVKSPTSC  110 (157)
Q Consensus        37 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~---~---~~~~~~i~~~~~~~~~~~~~~~~~~  110 (157)
                      .++.....+.|.|+||+..|-...-.-...+|+.+||.|.+- ..|+.   .   .+.+..++....-            
T Consensus       249 ~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~Lgi------------  315 (603)
T KOG0458|consen  249 WFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRSLGI------------  315 (603)
T ss_pred             EEecCceeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHHcCc------------
Confidence            445666788999999988887655555566789999999874 33332   1   2344445555442            


Q ss_pred             CCCCcEEEEEeCCCCCCCceec----HHHHHHHH-HHhC-----CcEEEeccccCCC
Q psy1873         111 VSSVPIVLVGNKKDLHMERMIS----YDEGKRLA-ESWK-----AGFVEASAKQDDY  157 (157)
Q Consensus       111 ~~~~p~~vv~nK~Dl~~~~~~~----~~~~~~~~-~~~~-----~~~~e~Sa~~~~~  157 (157)
                         ..++|+.||.|+.+=.+-.    ......|. +..|     +.|+.||+.+|+|
T Consensus       316 ---~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeN  369 (603)
T KOG0458|consen  316 ---SQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGEN  369 (603)
T ss_pred             ---ceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCc
Confidence               5689999999986432211    22234444 4444     5799999999997

>smart00053 DYNc Dynamin, GTPase

Probab=98.69  E-value=2.1e-07  Score=65.48  Aligned_cols=68  Identities=16%  Similarity=0.032  Sum_probs=39.8

Q ss_pred             EEEEEEeCCCCccC-------------cCchhhhccCC-CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCC
Q psy1873          43 YDLKLVDTAGQDEY-------------SIFPAQYSMDI-HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPT  108 (157)
Q Consensus        43 ~~~~i~D~~g~~~~-------------~~~~~~~~~~~-~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~  108 (157)
                      ..+.+.|+||-...             ..+...|+++. ++++++.|....-.-+...+....+    ....        
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l----d~~~--------  192 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV----DPQG--------  192 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH----HHcC--------
Confidence            46788999996422             12345567744 5888888875422111111222222    1122        


Q ss_pred             CCCCCCcEEEEEeCCCCCC
Q psy1873         109 SCVSSVPIVLVGNKKDLHM  127 (157)
Q Consensus       109 ~~~~~~p~~vv~nK~Dl~~  127 (157)
                           .|+++|.||.|..+
T Consensus       193 -----~rti~ViTK~D~~~  206 (240)
T smart00053      193 -----ERTIGVITKLDLMD  206 (240)
T ss_pred             -----CcEEEEEECCCCCC
Confidence                 88999999999864

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.68  E-value=6.1e-08  Score=62.89  Aligned_cols=76  Identities=14%  Similarity=0.009  Sum_probs=52.4

Q ss_pred             hhccCCCEEEEEEECCChhhHH--HHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHH
Q psy1873          62 QYSMDIHGYVLVYSITSHKSFE--VVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRL  139 (157)
Q Consensus        62 ~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~  139 (157)
                      ..++.+|++++|+|..++.+.+  .+..|+...    .. .             .|+++|+||+|+.+...  ......+
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~-~-------------k~~iivlNK~DL~~~~~--~~~~~~~   66 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DP-R-------------KKNILLLNKADLLTEEQ--RKAWAEY   66 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cC-C-------------CcEEEEEechhcCCHHH--HHHHHHH
Confidence            4567899999999998876543  344443322    11 2             89999999999854322  2334455


Q ss_pred             HHHhCCcEEEeccccCCC
Q psy1873         140 AESWKAGFVEASAKQDDY  157 (157)
Q Consensus       140 ~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+..+..++.+||+++++
T Consensus        67 ~~~~~~~ii~iSa~~~~~   84 (141)
T cd01857          67 FKKEGIVVVFFSALKENA   84 (141)
T ss_pred             HHhcCCeEEEEEecCCCc
Confidence            556678899999999864

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.66  E-value=4.4e-08  Score=73.01  Aligned_cols=84  Identities=24%  Similarity=0.271  Sum_probs=59.1

Q ss_pred             CccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec
Q psy1873          53 QDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS  132 (157)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~  132 (157)
                      .++|..+...+.+.++++++|+|+.+...     .|...+.+...  .             .|+++|+||+|+.+ +...
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~~--~-------------~piilV~NK~DLl~-k~~~  108 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFVG--G-------------NPVLLVGNKIDLLP-KSVN  108 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHhC--C-------------CCEEEEEEchhhCC-CCCC
Confidence            45677788888889999999999976542     24444444332  1             88999999999864 2333


Q ss_pred             HHHHH----HHHHHhCC---cEEEeccccCCC
Q psy1873         133 YDEGK----RLAESWKA---GFVEASAKQDDY  157 (157)
Q Consensus       133 ~~~~~----~~~~~~~~---~~~e~Sa~~~~~  157 (157)
                      .++..    .+++.+++   .++++||++|.|
T Consensus       109 ~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~g  140 (360)
T TIGR03597       109 LSKIKEWMKKRAKELGLKPVDIILVSAKKGNG  140 (360)
T ss_pred             HHHHHHHHHHHHHHcCCCcCcEEEecCCCCCC
Confidence            34433    34667776   489999999986

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=2.4e-07  Score=69.24  Aligned_cols=127  Identities=16%  Similarity=0.184  Sum_probs=86.5

Q ss_pred             CCCCCChhhhHhhhhc--c----------ccccc-----c---cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCch
Q psy1873           2 GYRSVGKSSLSIQFVD--G----------QFVDS-----Y---DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFP   60 (157)
Q Consensus         2 G~~~~GKssli~~~~~--~----------~~~~~-----~---~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~   60 (157)
                      -.|-+|||||-.+++-  +          +....     +   ....|... ...+..+.....+.+.||||+++|+.-.
T Consensus        19 SHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDFSEDT   98 (528)
T COG4108          19 SHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFSEDT   98 (528)
T ss_pred             ecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccccchhH
Confidence            4688999999999851  1          10000     0   01112222 5556666677889999999999999988


Q ss_pred             hhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH
Q psy1873          61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA  140 (157)
Q Consensus        61 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~  140 (157)
                      ...+..+|..++|+|....-.-+.+     ++.+-++-.+             +|++=..||.|-..  ..+.+...+..
T Consensus        99 YRtLtAvDsAvMVIDaAKGiE~qT~-----KLfeVcrlR~-------------iPI~TFiNKlDR~~--rdP~ELLdEiE  158 (528)
T COG4108          99 YRTLTAVDSAVMVIDAAKGIEPQTL-----KLFEVCRLRD-------------IPIFTFINKLDREG--RDPLELLDEIE  158 (528)
T ss_pred             HHHHHhhheeeEEEecccCccHHHH-----HHHHHHhhcC-------------CceEEEeecccccc--CChHHHHHHHH
Confidence            8889999999999998765443333     3445554333             99999999999643  33446666777


Q ss_pred             HHhCCcEE
Q psy1873         141 ESWKAGFV  148 (157)
Q Consensus       141 ~~~~~~~~  148 (157)
                      +.+++..+
T Consensus       159 ~~L~i~~~  166 (528)
T COG4108         159 EELGIQCA  166 (528)
T ss_pred             HHhCccee
Confidence            77776443

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.61  E-value=8.3e-07  Score=69.95  Aligned_cols=112  Identities=12%  Similarity=0.054  Sum_probs=64.4

Q ss_pred             CCCCCCChhhhHhhhhcccc-ccc-c-cCCccceEEEEEEECCeEEEEEEEeCCCCccCcC-------c---hhhhcc--
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDS-Y-DPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI-------F---PAQYSM--   65 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~-~-~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~---~~~~~~--   65 (157)
                      ||.+||||||++|++++... ... . ..|.. ........++  ..+.++||||-.....       +   ...++.  
T Consensus       124 VGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~  200 (763)
T TIGR00993       124 LGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKN  200 (763)
T ss_pred             ECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHHHHHhcC
Confidence            69999999999999998753 322 1 22222 1222223444  4578999999654321       1   111333  


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873          66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM  127 (157)
Q Consensus        66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~  127 (157)
                      .+|++|+|..++......+-..++..+.......-            -.-++|+.|+.|..+
T Consensus       201 gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I------------wk~tIVVFThgD~lp  250 (763)
T TIGR00993       201 PPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI------------WFNAIVTLTHAASAP  250 (763)
T ss_pred             CCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh------------HcCEEEEEeCCccCC
Confidence            47999999887643332122233444433333210            044889999999764

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG0468|consensus

Probab=98.59  E-value=1.2e-07  Score=73.97  Aligned_cols=107  Identities=22%  Similarity=0.259  Sum_probs=74.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccc---------cCCc------cceE---EEEEE---ECCeEEEEEEEeCCCCccCcCc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSY---------DPTI------ENTF---VKTTR---MNNQDYDLKLVDTAGQDEYSIF   59 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~---------~~t~------~~~~---~~~~~---~~~~~~~~~i~D~~g~~~~~~~   59 (157)
                      +|.-+.|||+|+..|..+..+...         ..+.      +...   ..++.   .+++.+.+.+.||+|+-.|..-
T Consensus       134 ~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE  213 (971)
T KOG0468|consen  134 VGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSDE  213 (971)
T ss_pred             eeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccchHH
Confidence            588999999999998765332211         1111      1111   11111   2577889999999999999988


Q ss_pred             hhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCC
Q psy1873          60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDL  125 (157)
Q Consensus        60 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl  125 (157)
                      ....++-+|++++++|+.+.-.++.     ++++.+.-+..             .|+++|.||.|.
T Consensus       214 ~ta~l~~sDgvVlvvDv~EGVmlnt-----Er~ikhaiq~~-------------~~i~vviNKiDR  261 (971)
T KOG0468|consen  214 TTASLRLSDGVVLVVDVAEGVMLNT-----ERIIKHAIQNR-------------LPIVVVINKVDR  261 (971)
T ss_pred             HHHHhhhcceEEEEEEcccCceeeH-----HHHHHHHHhcc-------------CcEEEEEehhHH
Confidence            8888899999999999988766542     23333333333             999999999995

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.58  E-value=1e-07  Score=61.80  Aligned_cols=49  Identities=31%  Similarity=0.378  Sum_probs=32.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQ   53 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~   53 (157)
                      +|.+|||||||+|++++....... ...+ ......+.+++   .+.+|||||-
T Consensus        89 ~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          89 VGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             ECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence            699999999999999987664211 1112 12233344444   4689999985

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=98.57  E-value=3.4e-07  Score=61.61  Aligned_cols=43  Identities=23%  Similarity=0.066  Sum_probs=33.5

Q ss_pred             cEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcEEEeccccCCC
Q psy1873         115 PIVLVGNKKDLHMERMISYDEGKRLAESWK--AGFVEASAKQDDY  157 (157)
Q Consensus       115 p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~  157 (157)
                      .=++|.||.|+.+.-..+.+...+-+++.+  .+++++|+++|+|
T Consensus       144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G  188 (202)
T COG0378         144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEG  188 (202)
T ss_pred             eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcC
Confidence            458999999997765555566666666554  7999999999986

>KOG1486|consensus

Probab=98.57  E-value=2.8e-06  Score=59.58  Aligned_cols=90  Identities=19%  Similarity=0.207  Sum_probs=61.1

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC-------chhhhccCCCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI-------FPAQYSMDIHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~~~~il   72 (157)
                      ||.|.||||||+..+...+- ...|..|+-......+.+++  ..+++.|.||.-.-.+       -.-..-+.+|.+++
T Consensus        68 IGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArtaDlilM  145 (364)
T KOG1486|consen   68 IGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILM  145 (364)
T ss_pred             ecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeecccEEEE
Confidence            69999999999999986544 34566665555566677777  5679999998432221       12234567899999


Q ss_pred             EEECCChhhHHHH-HHHHHHH
Q psy1873          73 VYSITSHKSFEVV-QILYDKL   92 (157)
Q Consensus        73 v~d~~~~~s~~~~-~~~~~~i   92 (157)
                      +.|.+..+.-..+ ...++.+
T Consensus       146 vLDatk~e~qr~~le~ELe~v  166 (364)
T KOG1486|consen  146 VLDATKSEDQREILEKELEAV  166 (364)
T ss_pred             EecCCcchhHHHHHHHHHHHh
Confidence            9999987765433 3444433

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.56  E-value=4.9e-07  Score=65.20  Aligned_cols=53  Identities=19%  Similarity=0.339  Sum_probs=33.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccc----------cCCcc-ceEEEEEEECCeEEEEEEEeCCCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSY----------DPTIE-NTFVKTTRMNNQDYDLKLVDTAGQ   53 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~----------~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~   53 (157)
                      +|.+|+|||||+|.|++.......          ..+.. ......+.-++....+.++||+|-
T Consensus        10 vG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGf   73 (281)
T PF00735_consen   10 VGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGF   73 (281)
T ss_dssp             EECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-C
T ss_pred             ECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCc
Confidence            699999999999999986553331          11111 122334445677889999999983

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG1532|consensus

Probab=98.52  E-value=9.9e-07  Score=62.46  Aligned_cols=16  Identities=19%  Similarity=0.409  Sum_probs=14.4

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      ||-.|+|||||++||.
T Consensus        25 vGMAGSGKTTF~QrL~   40 (366)
T KOG1532|consen   25 VGMAGSGKTTFMQRLN   40 (366)
T ss_pred             EecCCCCchhHHHHHH
Confidence            5889999999999985

>KOG4273|consensus

Probab=98.51  E-value=9.4e-07  Score=61.86  Aligned_cols=139  Identities=17%  Similarity=0.134  Sum_probs=80.7

Q ss_pred             CCCCCC--ChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECC
Q psy1873           1 MGYRSV--GKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSIT   77 (157)
Q Consensus         1 vG~~~~--GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~   77 (157)
                      +|-+||  ||-+|+.|+....|.....+.-. ..+.+++........+.+.-..--+.+.--.........+++++||++
T Consensus        10 ~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vmvfdls   89 (418)
T KOG4273|consen   10 TGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVMVFDLS   89 (418)
T ss_pred             ecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEEEEecc
Confidence            367788  99999999988777654333222 223443332222222222211111112211222223346899999999


Q ss_pred             ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC-----------------------------
Q psy1873          78 SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME-----------------------------  128 (157)
Q Consensus        78 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~-----------------------------  128 (157)
                      ....+..++.|+.--.-...                --++.+|||.|..+.                             
T Consensus        90 e~s~l~alqdwl~htdinsf----------------dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfg  153 (418)
T KOG4273|consen   90 EKSGLDALQDWLPHTDINSF----------------DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFG  153 (418)
T ss_pred             chhhhHHHHhhccccccccc----------------hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcc
Confidence            99999999999653211111                225778899885311                             


Q ss_pred             ---------------ceecHHHHHHHHHHhCCcEEEeccccC
Q psy1873         129 ---------------RMISYDEGKRLAESWKAGFVEASAKQD  155 (157)
Q Consensus       129 ---------------~~~~~~~~~~~~~~~~~~~~e~Sa~~~  155 (157)
                                     .-.....+..||.++|+.++|.+|.+.
T Consensus       154 isetegssllgsedasldirga~lewc~e~~~efieacasn~  195 (418)
T KOG4273|consen  154 ISETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNE  195 (418)
T ss_pred             ccccccccccccccchhhHHHHHHHHHHhcCceeeeecCCcc
Confidence                           002233368899999999999998653

>KOG1144|consensus

Probab=98.47  E-value=5e-07  Score=71.39  Aligned_cols=104  Identities=21%  Similarity=0.292  Sum_probs=70.0

Q ss_pred             CCCCCCChhhhHhhhhcccccc----cccCCccceEEEEEE---------ECC----eEEEEEEEeCCCCccCcCchhhh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVD----SYDPTIENTFVKTTR---------MNN----QDYDLKLVDTAGQDEYSIFPAQY   63 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~----~~~~t~~~~~~~~~~---------~~~----~~~~~~i~D~~g~~~~~~~~~~~   63 (157)
                      +|.-.+|||-|+..+.+..+..    .....+|.+|...-.         -++    +.--+.++||||++.|..++...
T Consensus       481 lGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrg  560 (1064)
T KOG1144|consen  481 LGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRG  560 (1064)
T ss_pred             eecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhcc
Confidence            5888999999999987654432    222333433311110         011    11236789999999999999999


Q ss_pred             ccCCCEEEEEEECCCh---hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCC
Q psy1873          64 SMDIHGYVLVYSITSH---KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDL  125 (157)
Q Consensus        64 ~~~~~~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl  125 (157)
                      ..-||++|+|.|+...   ..++.+.     ++....                +|++|+.||+|-
T Consensus       561 sslC~~aIlvvdImhGlepqtiESi~-----lLR~rk----------------tpFivALNKiDR  604 (1064)
T KOG1144|consen  561 SSLCDLAILVVDIMHGLEPQTIESIN-----LLRMRK----------------TPFIVALNKIDR  604 (1064)
T ss_pred             ccccceEEEEeehhccCCcchhHHHH-----HHHhcC----------------CCeEEeehhhhh
Confidence            9999999999999853   3444332     222211                999999999995

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=1.9e-06  Score=68.96  Aligned_cols=108  Identities=20%  Similarity=0.213  Sum_probs=72.5

Q ss_pred             CCCCCCChhhhHhhhhccc--------------ccccc--cCCccceE---EEEEEECCeEEEEEEEeCCCCccCcCchh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ--------------FVDSY--DPTIENTF---VKTTRMNNQDYDLKLVDTAGQDEYSIFPA   61 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~--------------~~~~~--~~t~~~~~---~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   61 (157)
                      +|+-.+|||||..+++-..              +.+..  ....+.+.   ...+.+.+ .+.+.+.||||+-+|..-..
T Consensus        16 ~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGHVDFt~EV~   94 (697)
T COG0480          16 VAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGHVDFTIEVE   94 (697)
T ss_pred             EeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCccccHHHHH
Confidence            3667899999999986321              10000  00111111   22333333 47889999999999999999


Q ss_pred             hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873          62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM  127 (157)
Q Consensus        62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~  127 (157)
                      ..++-+|++++|+|..+.-..+.-. .|.+.....                 +|.+++.||.|...
T Consensus        95 rslrvlDgavvVvdaveGV~~QTEt-v~rqa~~~~-----------------vp~i~fiNKmDR~~  142 (697)
T COG0480          95 RSLRVLDGAVVVVDAVEGVEPQTET-VWRQADKYG-----------------VPRILFVNKMDRLG  142 (697)
T ss_pred             HHHHhhcceEEEEECCCCeeecHHH-HHHHHhhcC-----------------CCeEEEEECccccc
Confidence            9999999999999998765544333 233333333                 99999999999753

>KOG0461|consensus

Probab=98.32  E-value=3.9e-06  Score=61.32  Aligned_cols=137  Identities=20%  Similarity=0.173  Sum_probs=76.0

Q ss_pred             CCCCCCChhhhHhhhhcc----cccccccCCc-c---ceEEEEEE-------ECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG----QFVDSYDPTI-E---NTFVKTTR-------MNNQDYDLKLVDTAGQDEYSIFPAQYSM   65 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~----~~~~~~~~t~-~---~~~~~~~~-------~~~~~~~~~i~D~~g~~~~~~~~~~~~~   65 (157)
                      +|.-.+|||||.+++..-    .|.....++. +   +.-...+.       ..++...+.+.|+||+...-...-.-..
T Consensus        13 LGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRtiiggaq   92 (522)
T KOG0461|consen   13 LGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRTIIGGAQ   92 (522)
T ss_pred             EeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHHHHhhhh
Confidence            477889999999998632    2221111111 1   11111122       2345677899999998653322222223


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce---ecHHHHHHHHHH
Q psy1873          66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM---ISYDEGKRLAES  142 (157)
Q Consensus        66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~---~~~~~~~~~~~~  142 (157)
                      -.|..|++.|+...-.-+.+.-.   ++.....               ...+||.||+|+..+.+   --.+.+.+..+-
T Consensus        93 iiDlm~lviDv~kG~QtQtAEcL---iig~~~c---------------~klvvvinkid~lpE~qr~ski~k~~kk~~Kt  154 (522)
T KOG0461|consen   93 IIDLMILVIDVQKGKQTQTAECL---IIGELLC---------------KKLVVVINKIDVLPENQRASKIEKSAKKVRKT  154 (522)
T ss_pred             eeeeeeEEEehhcccccccchhh---hhhhhhc---------------cceEEEEeccccccchhhhhHHHHHHHHHHHH
Confidence            34778999999875544433222   1111111               44788889988755422   112333444333


Q ss_pred             h-------CCcEEEeccccC
Q psy1873         143 W-------KAGFVEASAKQD  155 (157)
Q Consensus       143 ~-------~~~~~e~Sa~~~  155 (157)
                      +       +.|++++||+.|
T Consensus       155 Le~t~f~g~~PI~~vsa~~G  174 (522)
T KOG0461|consen  155 LESTGFDGNSPIVEVSAADG  174 (522)
T ss_pred             HHhcCcCCCCceeEEecCCC
Confidence            3       279999999988

>KOG1954|consensus

Probab=98.30  E-value=2.1e-06  Score=63.15  Aligned_cols=112  Identities=17%  Similarity=0.233  Sum_probs=71.8

Q ss_pred             CCCCCCChhhhHhhhhccccccc---ccCCccceEEEEE-------------EECC------------------------
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDS---YDPTIENTFVKTT-------------RMNN------------------------   40 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~---~~~t~~~~~~~~~-------------~~~~------------------------   40 (157)
                      +|+-..||||+++-++++.+..-   ..||.. .|...+             .++.                        
T Consensus        64 ~GqyStGKTtfi~yLle~dypg~riGpEPTtd-~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~csqmp  142 (532)
T KOG1954|consen   64 VGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTD-RFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCSQLP  142 (532)
T ss_pred             EeccccchhHHHHHHHhCCCCccccCCCCCcc-eeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHhcCC
Confidence            68899999999999999988643   234432 222222             2220                        


Q ss_pred             --eEEEEEEEeCCCCc-----------cCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCC
Q psy1873          41 --QDYDLKLVDTAGQD-----------EYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSP  107 (157)
Q Consensus        41 --~~~~~~i~D~~g~~-----------~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~  107 (157)
                        ---.+.|.|+||.-           .|.....-+...+|.+|++||....+--++..+.+..+..+.           
T Consensus       143 ~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E-----------  211 (532)
T KOG1954|consen  143 NQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHE-----------  211 (532)
T ss_pred             hhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCc-----------
Confidence              01356889999831           222335557788999999999876655555555444444332           


Q ss_pred             CCCCCCCcEEEEEeCCCCCCCce
Q psy1873         108 TSCVSSVPIVLVGNKKDLHMERM  130 (157)
Q Consensus       108 ~~~~~~~p~~vv~nK~Dl~~~~~  130 (157)
                            =.+-||.||+|..+..+
T Consensus       212 ------dkiRVVLNKADqVdtqq  228 (532)
T KOG1954|consen  212 ------DKIRVVLNKADQVDTQQ  228 (532)
T ss_pred             ------ceeEEEeccccccCHHH
Confidence                  55889999999865433

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.29  E-value=4e-06  Score=71.13  Aligned_cols=108  Identities=20%  Similarity=0.184  Sum_probs=62.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccc------cCCccceEEEEEEECCeEEEEEEEeCCCCcc--------CcCchhhhc--
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSY------DPTIENTFVKTTRMNNQDYDLKLVDTAGQDE--------YSIFPAQYS--   64 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~--   64 (157)
                      ||++|+||||++.+- +..+.-..      ...++.+....-.+.+   .-.++|++|...        ....|..++  
T Consensus       117 iG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~fL~~  192 (1169)
T TIGR03348       117 IGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGFLGL  192 (1169)
T ss_pred             ECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHHHHH
Confidence            799999999999886 33332110      0111111111111222   235899999432        122344433  


Q ss_pred             -------cCCCEEEEEEECCChhh-----H----HHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873          65 -------MDIHGYVLVYSITSHKS-----F----EVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH  126 (157)
Q Consensus        65 -------~~~~~~ilv~d~~~~~s-----~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~  126 (157)
                             +..||+|+++|+.+.-.     .    ..++..+.++.....-.              .||.|+.||+|+.
T Consensus       193 L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--------------~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       193 LRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--------------FPVYLVLTKADLL  256 (1169)
T ss_pred             HHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--------------CCEEEEEecchhh
Confidence                   34699999999875421     1    23455555565555443              9999999999985

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.26  E-value=5.4e-06  Score=64.25  Aligned_cols=130  Identities=14%  Similarity=0.040  Sum_probs=76.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      |||||+|||||++.++..--.    .|+.+.......+.++.-++.+.+++  .+...+. ...+.+|.++|.+|..=.-
T Consensus        75 vGPpGtGKsTLirSlVrr~tk----~ti~~i~GPiTvvsgK~RRiTflEcp--~Dl~~mi-DvaKIaDLVlLlIdgnfGf  147 (1077)
T COG5192          75 VGPPGTGKSTLIRSLVRRFTK----QTIDEIRGPITVVSGKTRRITFLECP--SDLHQMI-DVAKIADLVLLLIDGNFGF  147 (1077)
T ss_pred             ecCCCCChhHHHHHHHHHHHH----hhhhccCCceEEeecceeEEEEEeCh--HHHHHHH-hHHHhhheeEEEeccccCc
Confidence            699999999999998764221    33333334444667778888999987  2222222 2346679999999976432


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHH-----HHHHH-HhCCcEEEecccc
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEG-----KRLAE-SWKAGFVEASAKQ  154 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~-----~~~~~-~~~~~~~e~Sa~~  154 (157)
                      .-+. ..++..+..+..                ..++-|+++.|+.........-.     +.|.. ..|+.+|..|-..
T Consensus       148 EMET-mEFLnil~~HGm----------------PrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         148 EMET-MEFLNILISHGM----------------PRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             eehH-HHHHHHHhhcCC----------------CceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            1111 233333333332                45788999999965433222211     22222 2367777777543

>KOG0082|consensus

Probab=98.23  E-value=3e-06  Score=62.33  Aligned_cols=73  Identities=18%  Similarity=0.220  Sum_probs=54.6

Q ss_pred             eEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhH----------HHHHHHHHHHHHHhccccCCCCCCCCCC
Q psy1873          41 QDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSF----------EVVQILYDKLLDMTGKIQNSSVKSPTSC  110 (157)
Q Consensus        41 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~  110 (157)
                      +...+.++|.+||..-+.-|...|.+++++|+|.++++-+-.          .+-...+..+.+..--..          
T Consensus       193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~----------  262 (354)
T KOG0082|consen  193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFAN----------  262 (354)
T ss_pred             CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccccc----------
Confidence            336789999999999999999999999999999999875432          122334444443333222          


Q ss_pred             CCCCcEEEEEeCCCCC
Q psy1873         111 VSSVPIVLVGNKKDLH  126 (157)
Q Consensus       111 ~~~~p~~vv~nK~Dl~  126 (157)
                         .++++..||.||-
T Consensus       263 ---tsiiLFLNK~DLF  275 (354)
T KOG0082|consen  263 ---TSIILFLNKKDLF  275 (354)
T ss_pred             ---CcEEEEeecHHHH
Confidence               9999999999984

>KOG2486|consensus

Probab=98.23  E-value=1.5e-06  Score=61.53  Aligned_cols=136  Identities=18%  Similarity=0.088  Sum_probs=72.6

Q ss_pred             CCCCCCChhhhHhhhhccccccccc-CCccceE-EEEEEECCeEEEEEEEeCCCC----------ccCcCchhhhccCCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYD-PTIENTF-VKTTRMNNQDYDLKLVDTAGQ----------DEYSIFPAQYSMDIH   68 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~-~t~~~~~-~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~~~~~~~~~   68 (157)
                      +|.+|||||+|++-+...+...... ++.+... .....++   -.+.+.|.+|-          ..+..+...|+.+-+
T Consensus       142 ~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~  218 (320)
T KOG2486|consen  142 YGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERE  218 (320)
T ss_pred             ecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHhHHHHHHhhh
Confidence            4889999999999998766543222 2434322 2222232   24567899981          233445555665543


Q ss_pred             EEE---EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce----ecHHHHHH---
Q psy1873          69 GYV---LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM----ISYDEGKR---  138 (157)
Q Consensus        69 ~~i---lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~----~~~~~~~~---  138 (157)
                      -.+   +..|.+.  +++.++....+++.+..                +|+.+|.||+|....-.    -+......   
T Consensus       219 nLv~~FLLvd~sv--~i~~~D~~~i~~~ge~~----------------VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~  280 (320)
T KOG2486|consen  219 NLVRVFLLVDASV--PIQPTDNPEIAWLGENN----------------VPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQ  280 (320)
T ss_pred             hhheeeeeeeccC--CCCCCChHHHHHHhhcC----------------CCeEEeeehhhhhhhccccccCccccceeehh
Confidence            322   2334432  24443332223333322                99999999999642111    11111222   


Q ss_pred             ----HHHHhCCcEEEeccccCCC
Q psy1873         139 ----LAESWKAGFVEASAKQDDY  157 (157)
Q Consensus       139 ----~~~~~~~~~~e~Sa~~~~~  157 (157)
                          -+.....||+-+|+.++-|
T Consensus       281 ~l~~~~f~~~~Pw~~~Ssvt~~G  303 (320)
T KOG2486|consen  281 GLIRGVFLVDLPWIYVSSVTSLG  303 (320)
T ss_pred             hccccceeccCCceeeecccccC
Confidence                2222236888899988754

>cd01858 NGP_1 NGP-1

Probab=98.22  E-value=2.9e-06  Score=55.99  Aligned_cols=76  Identities=16%  Similarity=-0.007  Sum_probs=44.7

Q ss_pred             hccCCCEEEEEEECCChhh--HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH
Q psy1873          63 YSMDIHGYVLVYSITSHKS--FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA  140 (157)
Q Consensus        63 ~~~~~~~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~  140 (157)
                      .++++|++++|.|..++..  ...+..+    +..... .             .|+++|.||+|+.+...+ ......+.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~----l~~~~~-~-------------~p~ilVlNKiDl~~~~~~-~~~~~~~~   65 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEY----LKKEKP-H-------------KHLIFVLNKCDLVPTWVT-ARWVKILS   65 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHH----HHhccC-C-------------CCEEEEEEchhcCCHHHH-HHHHHHHh
Confidence            4678999999999998742  2233333    222211 1             899999999999543221 11122222


Q ss_pred             HHhCCcEEEeccccCCC
Q psy1873         141 ESWKAGFVEASAKQDDY  157 (157)
Q Consensus       141 ~~~~~~~~e~Sa~~~~~  157 (157)
                      +.+....+.+||+.+.|
T Consensus        66 ~~~~~~~~~iSa~~~~~   82 (157)
T cd01858          66 KEYPTIAFHASINNPFG   82 (157)
T ss_pred             cCCcEEEEEeecccccc
Confidence            22222347789998865

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.21  E-value=4e-06  Score=55.22  Aligned_cols=71  Identities=17%  Similarity=0.048  Sum_probs=43.2

Q ss_pred             CEEEEEEECCChhhHHHHHHHHH-HHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc
Q psy1873          68 HGYVLVYSITSHKSFEVVQILYD-KLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAG  146 (157)
Q Consensus        68 ~~~ilv~d~~~~~s~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  146 (157)
                      |++++|+|..++.+.+..  ++. ......   .             .|+++|.||+|+.+...+. .....+....+..
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~~---~-------------~p~IiVlNK~Dl~~~~~~~-~~~~~~~~~~~~~   61 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIERVLIKEK---G-------------KKLILVLNKADLVPKEVLR-KWLAYLRHSYPTI   61 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHHHHHhcC---C-------------CCEEEEEechhcCCHHHHH-HHHHHHHhhCCce
Confidence            678999999887654422  222 111111   1             8999999999985432211 1112233333557


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      ++.+||++|.|
T Consensus        62 ii~vSa~~~~g   72 (155)
T cd01849          62 PFKISATNGQG   72 (155)
T ss_pred             EEEEeccCCcC
Confidence            89999999875

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR00092 GTP-binding protein YchF

Probab=98.18  E-value=5.1e-06  Score=61.77  Aligned_cols=77  Identities=16%  Similarity=-0.020  Sum_probs=51.4

Q ss_pred             CCCCCCChhhhHhhhhcccc-c-ccccCCccceEEEEEEECCe---------------EEEEEEEeCCCCcc----CcCc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-V-DSYDPTIENTFVKTTRMNNQ---------------DYDLKLVDTAGQDE----YSIF   59 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~----~~~~   59 (157)
                      ||.|++|||||++.+++... . ..|..|+.......+.+.+.               ...+.+.|++|--.    -..+
T Consensus         8 vGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Gl   87 (368)
T TIGR00092         8 VGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGL   87 (368)
T ss_pred             ECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhcccCc
Confidence            69999999999999998765 3 34555544333344444432               24678999998533    2223


Q ss_pred             h---hhhccCCCEEEEEEECC
Q psy1873          60 P---AQYSMDIHGYVLVYSIT   77 (157)
Q Consensus        60 ~---~~~~~~~~~~ilv~d~~   77 (157)
                      .   -..++.+|+++.|.+..
T Consensus        88 gn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        88 GNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             chHHHHHHHhCCEEEEEEeCC
Confidence            2   33467899999999875

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.18  E-value=2.7e-05  Score=57.34  Aligned_cols=53  Identities=23%  Similarity=0.363  Sum_probs=36.1

Q ss_pred             CCCCCCChhhhHhhhhccccccc----------ccCCccce-EEEEEEECCeEEEEEEEeCCCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDS----------YDPTIENT-FVKTTRMNNQDYDLKLVDTAGQ   53 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~----------~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~   53 (157)
                      +|++|.|||||+|.|++......          ..+++... +...+.-++....+.+.||||-
T Consensus        29 ~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGf   92 (373)
T COG5019          29 VGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGF   92 (373)
T ss_pred             ecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCc
Confidence            69999999999999997644322          22333322 2334444677888899999984

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.11  E-value=5.5e-06  Score=59.71  Aligned_cols=49  Identities=24%  Similarity=0.388  Sum_probs=30.8

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCCccceEEEEEEECCeEEEEEEEeCCCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQ   53 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~   53 (157)
                      ||.||||||||+|++.+.... ....+.+.. ....+.++.   .+.++||||.
T Consensus       124 vG~~nvGKSslin~l~~~~~~~~~~~~g~T~-~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       124 VGIPNVGKSTLINRLAGKKVAKVGNRPGVTK-GQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             ECCCCCCHHHHHHHHhCCCccccCCCCCeec-ceEEEEeCC---CEEEEECCCc
Confidence            699999999999999976542 222221111 122333332   3589999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.10  E-value=2.7e-05  Score=58.48  Aligned_cols=135  Identities=19%  Similarity=0.109  Sum_probs=79.9

Q ss_pred             CCCCCChhhhHhhhhcccccc-cccCCccceEEEEEE-ECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC-
Q psy1873           2 GYRSVGKSSLSIQFVDGQFVD-SYDPTIENTFVKTTR-MNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS-   78 (157)
Q Consensus         2 G~~~~GKssli~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~-   78 (157)
                      |.---|||||+..+.+..-.. ......+.+....+. .+-....+.+.|.+|++++-...-.-....|..++|.+.++ 
T Consensus         7 GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deG   86 (447)
T COG3276           7 GHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEG   86 (447)
T ss_pred             eeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccC
Confidence            444569999999997643321 111111211111111 11223378899999999887666666677899999999864 


Q ss_pred             --hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh---CCcEEEeccc
Q psy1873          79 --HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW---KAGFVEASAK  153 (157)
Q Consensus        79 --~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~e~Sa~  153 (157)
                        .+..+.+     .++.....               ...++|.||+|..++..+. ...+.....+   ++++|.+|++
T Consensus        87 l~~qtgEhL-----~iLdllgi---------------~~giivltk~D~~d~~r~e-~~i~~Il~~l~l~~~~i~~~s~~  145 (447)
T COG3276          87 LMAQTGEHL-----LILDLLGI---------------KNGIIVLTKADRVDEARIE-QKIKQILADLSLANAKIFKTSAK  145 (447)
T ss_pred             cchhhHHHH-----HHHHhcCC---------------CceEEEEeccccccHHHHH-HHHHHHHhhcccccccccccccc
Confidence              3444433     24444432               3469999999987643221 1122222222   3688999999


Q ss_pred             cCCC
Q psy1873         154 QDDY  157 (157)
Q Consensus       154 ~~~~  157 (157)
                      +|+|
T Consensus       146 ~g~G  149 (447)
T COG3276         146 TGRG  149 (447)
T ss_pred             cCCC
Confidence            9985

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.10  E-value=1.1e-06  Score=61.97  Aligned_cols=88  Identities=16%  Similarity=0.174  Sum_probs=49.4

Q ss_pred             EEEEEEEeCCC--CccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEE
Q psy1873          42 DYDLKLVDTAG--QDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV  119 (157)
Q Consensus        42 ~~~~~i~D~~g--~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv  119 (157)
                      .+.+.|.+|.|  |.+     -....-+|.+++|....-.++++.++.=+.+                      ++=++|
T Consensus       121 G~D~IiiETVGvGQsE-----~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE----------------------iaDi~v  173 (266)
T PF03308_consen  121 GFDVIIIETVGVGQSE-----VDIADMADTVVLVLVPGLGDEIQAIKAGIME----------------------IADIFV  173 (266)
T ss_dssp             T-SEEEEEEESSSTHH-----HHHHTTSSEEEEEEESSTCCCCCTB-TTHHH----------------------H-SEEE
T ss_pred             CCCEEEEeCCCCCccH-----HHHHHhcCeEEEEecCCCccHHHHHhhhhhh----------------------hccEEE
Confidence            36667788765  433     2234567889999887777777665543333                      446789


Q ss_pred             EeCCCCCCCceecHHHHHHHHHHh-------CCcEEEeccccCCC
Q psy1873         120 GNKKDLHMERMISYDEGKRLAESW-------KAGFVEASAKQDDY  157 (157)
Q Consensus       120 ~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~e~Sa~~~~~  157 (157)
                      .||+|...... ...+.+....-.       .-|++.|||.+|+|
T Consensus       174 VNKaD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~G  217 (266)
T PF03308_consen  174 VNKADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTSALEGEG  217 (266)
T ss_dssp             EE--SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBS
T ss_pred             EeCCChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEEeCCCCC
Confidence            99999543222 222222222211       24899999999876

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd01855 YqeH YqeH

Probab=98.09  E-value=2.6e-06  Score=57.98  Aligned_cols=19  Identities=32%  Similarity=0.473  Sum_probs=17.1

Q ss_pred             CCCCCCChhhhHhhhhccc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ   19 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~   19 (157)
                      +|.+|||||||+|++++..
T Consensus       133 ~G~~nvGKStliN~l~~~~  151 (190)
T cd01855         133 VGATNVGKSTLINALLKKD  151 (190)
T ss_pred             EcCCCCCHHHHHHHHHHhc
Confidence            6999999999999998754

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.09  E-value=9e-06  Score=61.40  Aligned_cols=71  Identities=21%  Similarity=0.255  Sum_probs=55.4

Q ss_pred             EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh----------hHHHHHHHHHHHHHHhccccCCCCCCCCCCC
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK----------SFEVVQILYDKLLDMTGKIQNSSVKSPTSCV  111 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  111 (157)
                      ...+.++|++||...+..|..+|.+++++|+|.++++-+          .+.+....+..+.....-..           
T Consensus       235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~-----------  303 (389)
T PF00503_consen  235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKN-----------  303 (389)
T ss_dssp             TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTT-----------
T ss_pred             ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccccc-----------
Confidence            356799999999999999999999999999999987432          25555566666665544333           


Q ss_pred             CCCcEEEEEeCCCC
Q psy1873         112 SSVPIVLVGNKKDL  125 (157)
Q Consensus       112 ~~~p~~vv~nK~Dl  125 (157)
                        .|++|+.||.|+
T Consensus       304 --~~iil~lnK~D~  315 (389)
T PF00503_consen  304 --TPIILFLNKIDL  315 (389)
T ss_dssp             --SEEEEEEE-HHH
T ss_pred             --CceEEeeecHHH
Confidence              999999999996

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PRK12288 GTPase RsgA; Reviewed

Probab=98.09  E-value=3.6e-06  Score=62.44  Aligned_cols=54  Identities=22%  Similarity=0.304  Sum_probs=31.3

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCC---cc--ceE-EEEEEECCeEEEEEEEeCCCCccCc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPT---IE--NTF-VKTTRMNNQDYDLKLVDTAGQDEYS   57 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t---~~--~~~-~~~~~~~~~~~~~~i~D~~g~~~~~   57 (157)
                      +|.+|||||||+|+|+..... ....+.   .|  .+. ..-+.+++..   .++||||-..+.
T Consensus       211 vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        211 VGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             ECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            699999999999999965432 111111   11  111 1222232222   489999987654

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.08  E-value=8.3e-06  Score=59.12  Aligned_cols=50  Identities=24%  Similarity=0.411  Sum_probs=31.5

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCCccceEEEEEEECCeEEEEEEEeCCCCc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD   54 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~   54 (157)
                      +|.||||||||+|++++.+.. ....+.+... ...+.++.   .+.++||||--
T Consensus       127 ~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~-~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        127 IGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA-QQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             ECCCCCCHHHHHHHHhcCCccccCCCCCeEEE-EEEEEeCC---cEEEEECCCcC
Confidence            699999999999999986652 2222221111 22233332   36799999973

>PRK01889 GTPase RsgA; Reviewed

Probab=98.07  E-value=1.6e-05  Score=59.33  Aligned_cols=74  Identities=12%  Similarity=0.100  Sum_probs=48.3

Q ss_pred             ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-H
Q psy1873          64 SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE-S  142 (157)
Q Consensus        64 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~-~  142 (157)
                      ..++|.+++|.++..+-+...+.+++..+....                 +|.+||.||+||.+...   +....+.. .
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~-----------------i~piIVLNK~DL~~~~~---~~~~~~~~~~  169 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESG-----------------AEPVIVLTKADLCEDAE---EKIAEVEALA  169 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcC-----------------CCEEEEEEChhcCCCHH---HHHHHHHHhC
Confidence            577899999999964444445555544443322                 77899999999965311   11122221 3


Q ss_pred             hCCcEEEeccccCCC
Q psy1873         143 WKAGFVEASAKQDDY  157 (157)
Q Consensus       143 ~~~~~~e~Sa~~~~~  157 (157)
                      .+.+++.+||++|+|
T Consensus       170 ~g~~Vi~vSa~~g~g  184 (356)
T PRK01889        170 PGVPVLAVSALDGEG  184 (356)
T ss_pred             CCCcEEEEECCCCcc
Confidence            467999999999875

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.07  E-value=7e-06  Score=60.80  Aligned_cols=67  Identities=15%  Similarity=0.132  Sum_probs=45.3

Q ss_pred             EEEEEEeCCCCccCcC--chhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEE
Q psy1873          43 YDLKLVDTAGQDEYSI--FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG  120 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~--~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~  120 (157)
                      -.+.+.|+.|++.+-.  ++-.+-+..|..+++...++.-+  .+.+...-+.-..                +.|++|+.
T Consensus       201 klVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi~~a~----------------~lPviVvv  262 (527)
T COG5258         201 KLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGIALAM----------------ELPVIVVV  262 (527)
T ss_pred             cEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhhhhhh----------------cCCEEEEE
Confidence            3468899999998764  34555667899999988776533  3322222232222                29999999


Q ss_pred             eCCCCCC
Q psy1873         121 NKKDLHM  127 (157)
Q Consensus       121 nK~Dl~~  127 (157)
                      +|+|+.+
T Consensus       263 TK~D~~~  269 (527)
T COG5258         263 TKIDMVP  269 (527)
T ss_pred             EecccCc
Confidence            9999864

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.03  E-value=3.4e-05  Score=53.99  Aligned_cols=78  Identities=18%  Similarity=0.093  Sum_probs=44.6

Q ss_pred             CCCCCCChhhhHhhhhcc--ccccc--ccCCccceEEEEEEEC-CeEEEEEEEeCCCCccCcC------chhhhccC--C
Q psy1873           1 MGYRSVGKSSLSIQFVDG--QFVDS--YDPTIENTFVKTTRMN-NQDYDLKLVDTAGQDEYSI------FPAQYSMD--I   67 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~--~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~------~~~~~~~~--~   67 (157)
                      +|++++|||+|+|++++.  .|...  ..+++...+....... +....+.+.||+|......      ..-..+..  +
T Consensus        13 ~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~lls   92 (224)
T cd01851          13 FGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLS   92 (224)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHHHHHHh
Confidence            699999999999999988  66322  2233222222222221 2346789999999654332      11222222  5


Q ss_pred             CEEEEEEECCC
Q psy1873          68 HGYVLVYSITS   78 (157)
Q Consensus        68 ~~~ilv~d~~~   78 (157)
                      +.+|+..+...
T Consensus        93 s~~i~n~~~~~  103 (224)
T cd01851          93 SVLIYNSWETI  103 (224)
T ss_pred             CEEEEeccCcc
Confidence            66666655543

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.01  E-value=7.9e-06  Score=60.13  Aligned_cols=48  Identities=29%  Similarity=0.511  Sum_probs=31.6

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCCccceE-EEEEEECCeEEEEEEEeCCCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQ   53 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~   53 (157)
                      ||.||||||||||+|++.... ....|  |.+- ...+.++..   +.++||||-
T Consensus       138 vG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         138 VGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             EcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCCC---eEEecCCCc
Confidence            699999999999999987662 22233  2221 233333332   688999994

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.01  E-value=3e-05  Score=55.72  Aligned_cols=90  Identities=17%  Similarity=0.148  Sum_probs=48.5

Q ss_pred             EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN  121 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n  121 (157)
                      .+.+.|.+|.|--+-.   -....-+|.++++--..-.+.++.++.=+.+                      +-=++|.|
T Consensus       143 G~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimE----------------------iaDi~vIN  197 (323)
T COG1703         143 GYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIME----------------------IADIIVIN  197 (323)
T ss_pred             CCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhh----------------------hhheeeEe
Confidence            3566777776532211   1223345777777554444555555433222                      44688999


Q ss_pred             CCCCCCCceecHHHHHH---HH----HHhC--CcEEEeccccCCC
Q psy1873         122 KKDLHMERMISYDEGKR---LA----ESWK--AGFVEASAKQDDY  157 (157)
Q Consensus       122 K~Dl~~~~~~~~~~~~~---~~----~~~~--~~~~e~Sa~~~~~  157 (157)
                      |.|.... .....+...   +.    +..+  -+.+.+||.+|+|
T Consensus       198 KaD~~~A-~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~G  241 (323)
T COG1703         198 KADRKGA-EKAARELRSALDLLREVWRENGWRPPVVTTSALEGEG  241 (323)
T ss_pred             ccChhhH-HHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCC
Confidence            9995432 222222111   11    1223  3899999999986

>cd01856 YlqF YlqF

Probab=98.01  E-value=1.5e-05  Score=53.39  Aligned_cols=76  Identities=18%  Similarity=0.046  Sum_probs=46.9

Q ss_pred             hhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHH
Q psy1873          60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRL  139 (157)
Q Consensus        60 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~  139 (157)
                      ....++.+|++++++|.+++..-... .    +.....  .             .|+++|.||+|+.+...+  .....+
T Consensus        13 ~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~~~--~-------------k~~ilVlNK~Dl~~~~~~--~~~~~~   70 (171)
T cd01856          13 IKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKILG--N-------------KPRIIVLNKADLADPKKT--KKWLKY   70 (171)
T ss_pred             HHHHHhhCCEEEEEeeccCccCcCCh-h----hHhHhc--C-------------CCEEEEEehhhcCChHHH--HHHHHH
Confidence            45567889999999999876542211 1    122211  1             789999999998543211  111122


Q ss_pred             HHHhCCcEEEeccccCCC
Q psy1873         140 AESWKAGFVEASAKQDDY  157 (157)
Q Consensus       140 ~~~~~~~~~e~Sa~~~~~  157 (157)
                      ....+..++.+||++++|
T Consensus        71 ~~~~~~~vi~iSa~~~~g   88 (171)
T cd01856          71 FESKGEKVLFVNAKSGKG   88 (171)
T ss_pred             HHhcCCeEEEEECCCccc
Confidence            223345789999999875

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.00  E-value=2.6e-06  Score=56.24  Aligned_cols=18  Identities=39%  Similarity=0.501  Sum_probs=16.7

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||+|.|+..
T Consensus        41 ~G~SGvGKSSLiN~L~~~   58 (161)
T PF03193_consen   41 LGQSGVGKSSLINALLPE   58 (161)
T ss_dssp             ECSTTSSHHHHHHHHHTS
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            599999999999999876

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>KOG2655|consensus

Probab=98.00  E-value=6.3e-05  Score=55.62  Aligned_cols=53  Identities=21%  Similarity=0.276  Sum_probs=35.3

Q ss_pred             CCCCCCChhhhHhhhhccccccc---------ccCCccc-eEEEEEEECCeEEEEEEEeCCCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDS---------YDPTIEN-TFVKTTRMNNQDYDLKLVDTAGQ   53 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~---------~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~   53 (157)
                      +|++|.|||||+|.|+...+...         ...|... .+...+.-++....+.+.||||.
T Consensus        27 vG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGf   89 (366)
T KOG2655|consen   27 VGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGF   89 (366)
T ss_pred             ecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCC
Confidence            69999999999999887644322         1112221 22333344677888899999984

>KOG0410|consensus

Probab=97.96  E-value=3.1e-06  Score=61.30  Aligned_cols=83  Identities=19%  Similarity=0.180  Sum_probs=49.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccc--cCCccceEEEEEE-ECCeEEEEEEEeCCCCccCcCc--hh------hhccCCCE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSY--DPTIENTFVKTTR-MNNQDYDLKLVDTAGQDEYSIF--PA------QYSMDIHG   69 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~--~~t~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~~~~--~~------~~~~~~~~   69 (157)
                      ||..|+|||||+++|.+.......  -.|.... ..... ..+.  .+.+.||-|.-.--++  ..      .....+|.
T Consensus       184 VGYTNaGKsTLikaLT~Aal~p~drLFATLDpT-~h~a~Lpsg~--~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadl  260 (410)
T KOG0410|consen  184 VGYTNAGKSTLIKALTKAALYPNDRLFATLDPT-LHSAHLPSGN--FVLLTDTVGFISDLPIQLVAAFQATLEEVAEADL  260 (410)
T ss_pred             EeecCccHHHHHHHHHhhhcCccchhheeccch-hhhccCCCCc--EEEEeechhhhhhCcHHHHHHHHHHHHHHhhcce
Confidence            699999999999999865443221  1222211 11112 2232  3578999885332221  11      12456899


Q ss_pred             EEEEEECCChhhHHHHH
Q psy1873          70 YVLVYSITSHKSFEVVQ   86 (157)
Q Consensus        70 ~ilv~d~~~~~s~~~~~   86 (157)
                      ++-|.|++.|+--++..
T Consensus       261 llHvvDiShP~ae~q~e  277 (410)
T KOG0410|consen  261 LLHVVDISHPNAEEQRE  277 (410)
T ss_pred             EEEEeecCCccHHHHHH
Confidence            99999999997654443

>KOG3887|consensus

Probab=97.94  E-value=4.3e-05  Score=53.43  Aligned_cols=109  Identities=16%  Similarity=0.123  Sum_probs=63.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEE---EECCeEEEEEEEeCCCCccCcC---chhhhccCCCEEEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTT---RMNNQDYDLKLVDTAGQDEYSI---FPAQYSMDIHGYVLVY   74 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~ilv~   74 (157)
                      +|...+||||+..-.....-+.   .|.--+....+   .+.+.-+.+++||+|||..+..   -....++++-++|+|.
T Consensus        33 MG~rRsGKsSI~KVVFhkMsPn---eTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvI  109 (347)
T KOG3887|consen   33 MGLRRSGKSSIQKVVFHKMSPN---ETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVI  109 (347)
T ss_pred             EeecccCcchhhheeeeccCCC---ceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEEEE
Confidence            5888999999865544332211   11110001111   1222456789999999977653   2566789999999999


Q ss_pred             ECCChhhHH-HHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873          75 SITSHKSFE-VVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH  126 (157)
Q Consensus        75 d~~~~~s~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~  126 (157)
                      |..+.  +. .+.+...-+ ......           ++.+.+=|...|.|-.
T Consensus       110 DaQdd--y~eala~L~~~v-~raykv-----------Np~in~EVfiHKvDGL  148 (347)
T KOG3887|consen  110 DAQDD--YMEALARLHMTV-ERAYKV-----------NPNINFEVFIHKVDGL  148 (347)
T ss_pred             echHH--HHHHHHHHHHHh-hheeec-----------CCCceEEEEEEeccCC
Confidence            97543  33 333333333 222221           3447788999999953

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.93  E-value=0.00013  Score=53.72  Aligned_cols=86  Identities=14%  Similarity=0.051  Sum_probs=49.9

Q ss_pred             eEEEEEEEeCCCCccCcCc-----hh-------hhccCCCEEEEEEECCChh-hHHHHHHHHHHHHHHhccccCCCCCCC
Q psy1873          41 QDYDLKLVDTAGQDEYSIF-----PA-------QYSMDIHGYVLVYSITSHK-SFEVVQILYDKLLDMTGKIQNSSVKSP  107 (157)
Q Consensus        41 ~~~~~~i~D~~g~~~~~~~-----~~-------~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~  107 (157)
                      ..+.+.+.||+|.......     ..       ..-...+..++|.|.+... .+..+..+    .+..           
T Consensus       195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f----~~~~-----------  259 (318)
T PRK10416        195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF----HEAV-----------  259 (318)
T ss_pred             CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH----HhhC-----------
Confidence            3467899999997543321     11       0112456788888888432 33333222    2111           


Q ss_pred             CCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873         108 TSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus       108 ~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                            .+.-+|.||.|....    ...+...+...++|+..++
T Consensus       260 ------~~~giIlTKlD~t~~----~G~~l~~~~~~~~Pi~~v~  293 (318)
T PRK10416        260 ------GLTGIILTKLDGTAK----GGVVFAIADELGIPIKFIG  293 (318)
T ss_pred             ------CCCEEEEECCCCCCC----ccHHHHHHHHHCCCEEEEe
Confidence                  345789999995332    2334555667788887777

>PRK13796 GTPase YqeH; Provisional

Probab=97.92  E-value=3.2e-05  Score=57.90  Aligned_cols=69  Identities=26%  Similarity=0.246  Sum_probs=44.4

Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHH----HHHHHh
Q psy1873          68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGK----RLAESW  143 (157)
Q Consensus        68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~----~~~~~~  143 (157)
                      +.+++|.|+.|...     .|...+.....  .             .|+++|+||+|+.+ +....++..    .+++.+
T Consensus        71 ~lIv~VVD~~D~~~-----s~~~~L~~~~~--~-------------kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         71 ALVVNVVDIFDFNG-----SWIPGLHRFVG--N-------------NPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             cEEEEEEECccCCC-----chhHHHHHHhC--C-------------CCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhc
Confidence            38889999887442     23333333222  1             88999999999964 233333333    345666


Q ss_pred             CC---cEEEeccccCCC
Q psy1873         144 KA---GFVEASAKQDDY  157 (157)
Q Consensus       144 ~~---~~~e~Sa~~~~~  157 (157)
                      |+   .++.+||++|.|
T Consensus       130 g~~~~~v~~vSAk~g~g  146 (365)
T PRK13796        130 GLRPVDVVLISAQKGHG  146 (365)
T ss_pred             CCCcCcEEEEECCCCCC
Confidence            76   589999999875

>KOG1143|consensus

Probab=97.89  E-value=5.4e-05  Score=56.10  Aligned_cols=96  Identities=17%  Similarity=0.169  Sum_probs=59.0

Q ss_pred             EEEEEEeCCCCccCcCchhhhccC--CCEEEEEEECCChhhHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEE
Q psy1873          43 YDLKLVDTAGQDEYSIFPAQYSMD--IHGYVLVYSITSHKSFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV  119 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~~~~~~~~~--~~~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv  119 (157)
                      -.+.+.|.+|+.+|....-.-+.+  .+..+++.+....  +... ++.+-.+....                 +|+.|+
T Consensus       249 KlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~G--i~~tTrEHLgl~~AL~-----------------iPfFvl  309 (591)
T KOG1143|consen  249 KLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRG--ITWTTREHLGLIAALN-----------------IPFFVL  309 (591)
T ss_pred             ceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCC--CccccHHHHHHHHHhC-----------------CCeEEE
Confidence            456889999999998653332222  3567777776543  2222 22222232222                 999999


Q ss_pred             EeCCCCCCC------------------------ceecHHHHHHHHHHh---CC-cEEEeccccCCC
Q psy1873         120 GNKKDLHME------------------------RMISYDEGKRLAESW---KA-GFVEASAKQDDY  157 (157)
Q Consensus       120 ~nK~Dl~~~------------------------~~~~~~~~~~~~~~~---~~-~~~e~Sa~~~~~  157 (157)
                      .+|.|+...                        +.-..+++...+.+.   ++ |+|.+|+.+|+|
T Consensus       310 vtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGeg  375 (591)
T KOG1143|consen  310 VTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEG  375 (591)
T ss_pred             EEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccc
Confidence            999998532                        123344454444443   34 999999999985

>KOG1424|consensus

Probab=97.88  E-value=1.3e-05  Score=61.22  Aligned_cols=54  Identities=28%  Similarity=0.319  Sum_probs=38.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCC--ccCcC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQ--DEYSI   58 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~--~~~~~   58 (157)
                      ||.|||||||+||.|.+.+.+.-. .|-| ..+..++.+..   .+.+.|+||-  +.|..
T Consensus       320 VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~---~v~LCDCPGLVfPSf~~  376 (562)
T KOG1424|consen  320 VGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSP---SVCLCDCPGLVFPSFSP  376 (562)
T ss_pred             ecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCC---CceecCCCCccccCCCc
Confidence            799999999999999998876443 3334 34455556554   3578999994  44443

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=97.86  E-value=4.7e-05  Score=54.71  Aligned_cols=136  Identities=18%  Similarity=0.190  Sum_probs=74.1

Q ss_pred             CCCCCCChhhhHhhhhcc----------ccc--c--cccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG----------QFV--D--SYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM   65 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~----------~~~--~--~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   65 (157)
                      +|.-.-|||||...+..-          .+.  +  ......+... ..++.+.-..-.+...|+||+.+|-...-.--.
T Consensus        18 iGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvKNMItgAa   97 (394)
T COG0050          18 IGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAA   97 (394)
T ss_pred             eccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHHHHhhhHH
Confidence            577889999999887421          110  0  0001112222 233333322334467899999887643222223


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee---cHHHHHHHHHH
Q psy1873          66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI---SYDEGKRLAES  142 (157)
Q Consensus        66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~---~~~~~~~~~~~  142 (157)
                      ..|+.|||.+.+|..--+.....   ++...-.-              ..++++.||+|+.+.+..   -..+.+.+...
T Consensus        98 qmDgAILVVsA~dGpmPqTrEHi---LlarqvGv--------------p~ivvflnK~Dmvdd~ellelVemEvreLLs~  160 (394)
T COG0050          98 QMDGAILVVAATDGPMPQTREHI---LLARQVGV--------------PYIVVFLNKVDMVDDEELLELVEMEVRELLSE  160 (394)
T ss_pred             hcCccEEEEEcCCCCCCcchhhh---hhhhhcCC--------------cEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence            45889999998885432222111   22222111              357888899999875442   23445666667


Q ss_pred             hC-----CcEEEeccc
Q psy1873         143 WK-----AGFVEASAK  153 (157)
Q Consensus       143 ~~-----~~~~e~Sa~  153 (157)
                      ++     .|++.-||+
T Consensus       161 y~f~gd~~Pii~gSal  176 (394)
T COG0050         161 YGFPGDDTPIIRGSAL  176 (394)
T ss_pred             cCCCCCCcceeechhh
Confidence            66     456666654

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=97.84  E-value=0.0012  Score=49.99  Aligned_cols=66  Identities=12%  Similarity=0.223  Sum_probs=43.5

Q ss_pred             EEEEEEECC----ChhhHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh
Q psy1873          69 GYVLVYSIT----SHKSFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW  143 (157)
Q Consensus        69 ~~ilv~d~~----~~~s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~  143 (157)
                      |+++.-|.+    .+++|..+. +-+.++.+..                 .|++|+.|-.+-.  ..-....+..+...+
T Consensus       148 GiVVTTDGSi~dipRe~Y~eAEervI~ELk~ig-----------------KPFvillNs~~P~--s~et~~L~~eL~ekY  208 (492)
T PF09547_consen  148 GIVVTTDGSITDIPRENYVEAEERVIEELKEIG-----------------KPFVILLNSTKPY--SEETQELAEELEEKY  208 (492)
T ss_pred             eEEEecCCCccCCChHHHHHHHHHHHHHHHHhC-----------------CCEEEEEeCCCCC--CHHHHHHHHHHHHHh
Confidence            455555544    356666663 3344443333                 9999999998842  344556778888888


Q ss_pred             CCcEEEeccc
Q psy1873         144 KAGFVEASAK  153 (157)
Q Consensus       144 ~~~~~e~Sa~  153 (157)
                      +.+.+.+++.
T Consensus       209 ~vpVlpvnc~  218 (492)
T PF09547_consen  209 DVPVLPVNCE  218 (492)
T ss_pred             CCcEEEeehH
Confidence            9998888764

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PRK12289 GTPase RsgA; Reviewed

Probab=97.84  E-value=2.7e-05  Score=57.96  Aligned_cols=19  Identities=37%  Similarity=0.431  Sum_probs=17.0

Q ss_pred             CCCCCCChhhhHhhhhccc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ   19 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~   19 (157)
                      +|++|||||||+|+|+...
T Consensus       178 iG~SgVGKSSLIN~L~~~~  196 (352)
T PRK12289        178 AGPSGVGKSSLINRLIPDV  196 (352)
T ss_pred             EeCCCCCHHHHHHHHcCcc
Confidence            6999999999999998653

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.83  E-value=6.3e-05  Score=54.13  Aligned_cols=85  Identities=16%  Similarity=0.035  Sum_probs=50.1

Q ss_pred             EEEEEEEeCCCCccCcCchh------------hhccCCCEEEEEEECCCh-hhHHHHHHHHHHHHHHhccccCCCCCCCC
Q psy1873          42 DYDLKLVDTAGQDEYSIFPA------------QYSMDIHGYVLVYSITSH-KSFEVVQILYDKLLDMTGKIQNSSVKSPT  108 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~------------~~~~~~~~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~~~~~~  108 (157)
                      .+.+.+.||+|........-            ..-..++..++|.|.+.. +.++.+    ..+.+..            
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~------------  217 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV------------  217 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC------------
Confidence            46789999999765432211            111237889999998743 223322    2222222            


Q ss_pred             CCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873         109 SCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus       109 ~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                           .+.-+|.||.|....    ...+.......++|+..++
T Consensus       218 -----~~~g~IlTKlDe~~~----~G~~l~~~~~~~~Pi~~~~  251 (272)
T TIGR00064       218 -----GLTGIILTKLDGTAK----GGIILSIAYELKLPIKFIG  251 (272)
T ss_pred             -----CCCEEEEEccCCCCC----ccHHHHHHHHHCcCEEEEe
Confidence                 345789999997432    2334455556688877766

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.82  E-value=0.00018  Score=51.99  Aligned_cols=85  Identities=18%  Similarity=0.040  Sum_probs=57.2

Q ss_pred             CcCchhhhccCCCEEEEEEECCChh-hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHH
Q psy1873          56 YSIFPAQYSMDIHGYVLVYSITSHK-SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYD  134 (157)
Q Consensus        56 ~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~  134 (157)
                      ...+...-..+.|-.++++++.+|+ +...+.+++...-...                 +.-+|+.||+||.+......+
T Consensus        69 kn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~g-----------------i~pvIvlnK~DL~~~~~~~~~  131 (301)
T COG1162          69 KNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGG-----------------IEPVIVLNKIDLLDDEEAAVK  131 (301)
T ss_pred             cCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHcC-----------------CcEEEEEEccccCcchHHHHH
Confidence            3334444444567777787888776 5666666544433222                 777888999999765544434


Q ss_pred             HHHHHHHHhCCcEEEeccccCCC
Q psy1873         135 EGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus       135 ~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +........|.+.+.+||+++++
T Consensus       132 ~~~~~y~~~gy~v~~~s~~~~~~  154 (301)
T COG1162         132 ELLREYEDIGYPVLFVSAKNGDG  154 (301)
T ss_pred             HHHHHHHhCCeeEEEecCcCccc
Confidence            56667777899999999999864

>KOG1547|consensus

Probab=97.82  E-value=0.00012  Score=51.21  Aligned_cols=53  Identities=25%  Similarity=0.311  Sum_probs=34.2

Q ss_pred             CCCCCCChhhhHhhhhccccccc---------ccCCccceE-EEEEEECCeEEEEEEEeCCCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDS---------YDPTIENTF-VKTTRMNNQDYDLKLVDTAGQ   53 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~---------~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~   53 (157)
                      ||.+|.|||||+|.+...+....         +..|+.... ...+.-++-...+.+.||+|.
T Consensus        52 VgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGf  114 (336)
T KOG1547|consen   52 VGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGF  114 (336)
T ss_pred             EecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCc
Confidence            69999999999999976554331         112222111 333334566778889999983

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.81  E-value=1.5e-05  Score=57.83  Aligned_cols=20  Identities=30%  Similarity=0.333  Sum_probs=17.4

Q ss_pred             CCCCCCChhhhHhhhhcccc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF   20 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~   20 (157)
                      +|++|||||||+|.+++...
T Consensus       167 ~G~sg~GKSTlin~l~~~~~  186 (287)
T cd01854         167 VGQSGVGKSTLINALLPDLD  186 (287)
T ss_pred             ECCCCCCHHHHHHHHhchhh
Confidence            69999999999999987543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.80  E-value=6.3e-05  Score=54.26  Aligned_cols=76  Identities=17%  Similarity=0.059  Sum_probs=48.1

Q ss_pred             hhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHH
Q psy1873          60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRL  139 (157)
Q Consensus        60 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~  139 (157)
                      ....++.+|++++|.|..++.+.+.  .++.+++   .  .             .|+++|.||+|+.+....  .....+
T Consensus        15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~--~-------------kp~IiVlNK~DL~~~~~~--~~~~~~   72 (276)
T TIGR03596        15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---G--N-------------KPRLIVLNKADLADPAVT--KQWLKY   72 (276)
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---C--C-------------CCEEEEEEccccCCHHHH--HHHHHH
Confidence            4556788999999999987654322  1122222   1  2             889999999998543211  111112


Q ss_pred             HHHhCCcEEEeccccCCC
Q psy1873         140 AESWKAGFVEASAKQDDY  157 (157)
Q Consensus       140 ~~~~~~~~~e~Sa~~~~~  157 (157)
                      ....+.+++.+||+++.|
T Consensus        73 ~~~~~~~vi~iSa~~~~g   90 (276)
T TIGR03596        73 FEEKGIKALAINAKKGKG   90 (276)
T ss_pred             HHHcCCeEEEEECCCccc
Confidence            233466889999999865

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=97.77  E-value=1.8e-05  Score=56.04  Aligned_cols=19  Identities=37%  Similarity=0.326  Sum_probs=17.0

Q ss_pred             CCCCCCChhhhHhhhhccc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ   19 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~   19 (157)
                      +|.+|||||||+|+++...
T Consensus       126 ~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       126 AGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             ECCCCCCHHHHHHHHhhhh
Confidence            6999999999999998653

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.73  E-value=7.7e-05  Score=62.76  Aligned_cols=110  Identities=19%  Similarity=0.184  Sum_probs=61.0

Q ss_pred             CCCCCCChhhhHhhhhccccc--cccc-CCccceEEEEEEEC-CeEEEEEEEeCCCCccCc--------Cchhhh-----
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV--DSYD-PTIENTFVKTTRMN-NQDYDLKLVDTAGQDEYS--------IFPAQY-----   63 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~--~~~~-~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~--------~~~~~~-----   63 (157)
                      ||++|+||||++..-- .+|+  .... ...... . +..++ .-.-+-.++||+|...-.        ..|..+     
T Consensus       131 iG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~-g-T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLk  207 (1188)
T COG3523         131 IGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGP-G-TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLK  207 (1188)
T ss_pred             ecCCCCCcchHHhccc-ccCcchhhhccccccCC-C-CcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHHH
Confidence            7999999999986532 2221  1100 000000 0 11111 011234678998843222        234433     


Q ss_pred             ----ccCCCEEEEEEECCChhh---------HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873          64 ----SMDIHGYVLVYSITSHKS---------FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM  127 (157)
Q Consensus        64 ----~~~~~~~ilv~d~~~~~s---------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~  127 (157)
                          .+..||+|++.|+++.-.         ...++.-+.++.+..+-.              .|++|+.||.|+..
T Consensus       208 k~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~--------------~PVYl~lTk~Dll~  270 (1188)
T COG3523         208 KYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHAR--------------LPVYLVLTKADLLP  270 (1188)
T ss_pred             HhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccC--------------CceEEEEecccccc
Confidence                345699999999875322         123444556666666544              99999999999853

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.72  E-value=3e-05  Score=57.96  Aligned_cols=18  Identities=39%  Similarity=0.549  Sum_probs=16.6

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      ||.+|||||||+|++++.
T Consensus       160 vG~~nvGKStliN~l~~~  177 (360)
T TIGR03597       160 VGVTNVGKSSLINKLLKQ  177 (360)
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            699999999999999874

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.72  E-value=5e-05  Score=54.81  Aligned_cols=54  Identities=20%  Similarity=0.261  Sum_probs=30.6

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCc--c---ceEEEEEEECCeEEEEEEEeCCCCccCc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTI--E---NTFVKTTRMNNQDYDLKLVDTAGQDEYS   57 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~--~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~   57 (157)
                      +|.+|||||||+|++....-  ....+...  |   .....-+..++..   .|.||||...+.
T Consensus       170 ~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~  230 (301)
T COG1162         170 LGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG  230 (301)
T ss_pred             ECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence            69999999999999985211  11111111  1   1122333333233   478999977654

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.68  E-value=0.00011  Score=53.35  Aligned_cols=76  Identities=18%  Similarity=0.076  Sum_probs=48.6

Q ss_pred             hhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHH
Q psy1873          60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRL  139 (157)
Q Consensus        60 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~  139 (157)
                      ....++.+|++++|.|..++.+.+.  .++..+..     .             .|+++|.||+|+.+...  ......+
T Consensus        18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~-------------kp~iiVlNK~DL~~~~~--~~~~~~~   75 (287)
T PRK09563         18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----N-------------KPRLLILNKSDLADPEV--TKKWIEY   75 (287)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----C-------------CCEEEEEEchhcCCHHH--HHHHHHH
Confidence            4556788999999999987654332  12222221     2             88999999999854211  1112222


Q ss_pred             HHHhCCcEEEeccccCCC
Q psy1873         140 AESWKAGFVEASAKQDDY  157 (157)
Q Consensus       140 ~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+..+.+++.+||+++.|
T Consensus        76 ~~~~~~~vi~vSa~~~~g   93 (287)
T PRK09563         76 FEEQGIKALAINAKKGQG   93 (287)
T ss_pred             HHHcCCeEEEEECCCccc
Confidence            234467789999999865

>KOG1491|consensus

Probab=97.68  E-value=8.4e-05  Score=54.31  Aligned_cols=76  Identities=16%  Similarity=0.148  Sum_probs=47.2

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccC-CccceEEEEEEEC---------------CeEEEEEEEeCCCC----ccCcCc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDP-TIENTFVKTTRMN---------------NQDYDLKLVDTAGQ----DEYSIF   59 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~-t~~~~~~~~~~~~---------------~~~~~~~i~D~~g~----~~~~~~   59 (157)
                      ||-|+||||||+|.+.+.... ..+.. |+... ..++.+.               .....+.++|++|-    ..-..+
T Consensus        26 VGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn-~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GL  104 (391)
T KOG1491|consen   26 VGLPNVGKSTFFNALTKSKAGAANFPFCTIDPN-EARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGL  104 (391)
T ss_pred             eeCCCCchHHHHHHHhcCCCCccCCCcceeccc-cceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCc
Confidence            699999999999999976553 33332 33321 1122221               12567899999873    344455


Q ss_pred             hhhh---ccCCCEEEEEEECC
Q psy1873          60 PAQY---SMDIHGYVLVYSIT   77 (157)
Q Consensus        60 ~~~~---~~~~~~~ilv~d~~   77 (157)
                      ...|   ++.+|+++-|.+..
T Consensus       105 GN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen  105 GNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             hHHHHHhhhhccceeEEEEec
Confidence            4444   56678887766643

>cd03112 CobW_like The function of this protein family is unkown

Probab=97.67  E-value=0.00017  Score=47.71  Aligned_cols=18  Identities=22%  Similarity=0.455  Sum_probs=15.9

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|..|+|||||++++++.
T Consensus         6 ~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           6 TGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EECCCCCHHHHHHHHHhc
Confidence            489999999999998764

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.65  E-value=0.00088  Score=43.28  Aligned_cols=103  Identities=18%  Similarity=0.153  Sum_probs=58.8

Q ss_pred             CCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhh
Q psy1873           2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKS   81 (157)
Q Consensus         2 G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s   81 (157)
                      |.+|+|||++.-.+...--... ..+.-...  ........+.+.++|+++..  .......+..+|.++++.+.+ ..+
T Consensus         7 ~kgg~gkt~~~~~~a~~~~~~~-~~~~~vd~--D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s   80 (139)
T cd02038           7 GKGGVGKTNISANLALALAKLG-KRVLLLDA--DLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTS   80 (139)
T ss_pred             CCCCCcHHHHHHHHHHHHHHCC-CcEEEEEC--CCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhH
Confidence            5789999999766642110000 00000000  00000112678999998743  333456788899999988765 555


Q ss_pred             HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCC
Q psy1873          82 FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDL  125 (157)
Q Consensus        82 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl  125 (157)
                      +..+...+..+.....  .             .++.++.|+.+-
T Consensus        81 ~~~~~~~l~~l~~~~~--~-------------~~~~lVvN~~~~  109 (139)
T cd02038          81 ITDAYALIKKLAKQLR--V-------------LNFRVVVNRAES  109 (139)
T ss_pred             HHHHHHHHHHHHHhcC--C-------------CCEEEEEeCCCC
Confidence            6665555555543321  1             668899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK00098 GTPase RsgA; Reviewed

Probab=97.63  E-value=4.6e-05  Score=55.55  Aligned_cols=19  Identities=32%  Similarity=0.354  Sum_probs=16.9

Q ss_pred             CCCCCCChhhhHhhhhccc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ   19 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~   19 (157)
                      +|++|||||||+|.+++..
T Consensus       170 ~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        170 AGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            6999999999999998654

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.62  E-value=0.00015  Score=52.83  Aligned_cols=98  Identities=19%  Similarity=0.228  Sum_probs=57.8

Q ss_pred             EEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCC
Q psy1873          44 DLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKK  123 (157)
Q Consensus        44 ~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~  123 (157)
                      .+.+.|.||++-.-+..-+--.-.|+.+||...+.+=.--+.++.+.. ++...-               ..++|+-||.
T Consensus        87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~A-leIigi---------------k~iiIvQNKI  150 (415)
T COG5257          87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMA-LEIIGI---------------KNIIIVQNKI  150 (415)
T ss_pred             EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHH-Hhhhcc---------------ceEEEEeccc
Confidence            568899999986543211111123788999998864322222222222 222222               4589999999


Q ss_pred             CCCCCc--eecHHHHHHHHHHh---CCcEEEeccccCCC
Q psy1873         124 DLHMER--MISYDEGKRLAESW---KAGFVEASAKQDDY  157 (157)
Q Consensus       124 Dl~~~~--~~~~~~~~~~~~~~---~~~~~e~Sa~~~~~  157 (157)
                      ||....  .-..++.++|.+--   ++|++.+||..+.|
T Consensus       151 DlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~N  189 (415)
T COG5257         151 DLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHKAN  189 (415)
T ss_pred             ceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccC
Confidence            996532  22334455555422   47999999987765

>PRK14974 cell division protein FtsY; Provisional

Probab=97.55  E-value=0.00019  Score=53.07  Aligned_cols=84  Identities=13%  Similarity=0.017  Sum_probs=48.3

Q ss_pred             EEEEEEeCCCCccCcC-ch---hhh--ccCCCEEEEEEECCChhh-HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc
Q psy1873          43 YDLKLVDTAGQDEYSI-FP---AQY--SMDIHGYVLVYSITSHKS-FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP  115 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~-~~---~~~--~~~~~~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p  115 (157)
                      +.+.+.||+|...... +.   ..+  .-..+.+++|.|.+..+. .+.+..    +....                 ..
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~----f~~~~-----------------~~  281 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE----FNEAV-----------------GI  281 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH----HHhcC-----------------CC
Confidence            5688999999765432 11   111  124678889999875432 222322    22211                 34


Q ss_pred             EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873         116 IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus       116 ~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                      --+|.||.|....  .  .-+...+...++|+..++
T Consensus       282 ~giIlTKlD~~~~--~--G~~ls~~~~~~~Pi~~i~  313 (336)
T PRK14974        282 DGVILTKVDADAK--G--GAALSIAYVIGKPILFLG  313 (336)
T ss_pred             CEEEEeeecCCCC--c--cHHHHHHHHHCcCEEEEe
Confidence            5788999997432  1  234445555688877776

>PRK13796 GTPase YqeH; Provisional

Probab=97.55  E-value=9.6e-05  Score=55.41  Aligned_cols=18  Identities=33%  Similarity=0.545  Sum_probs=16.4

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      ||.+|||||||+|++++.
T Consensus       166 vG~~NvGKSTLiN~L~~~  183 (365)
T PRK13796        166 VGVTNVGKSTLINRIIKE  183 (365)
T ss_pred             EcCCCCcHHHHHHHHHhh
Confidence            699999999999999854

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.53  E-value=0.00036  Score=53.15  Aligned_cols=38  Identities=16%  Similarity=0.246  Sum_probs=24.2

Q ss_pred             EEEEEEEeCCCCccCcCchhh------hccCCCEEEEEEECCCh
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQ------YSMDIHGYVLVYSITSH   79 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~------~~~~~~~~ilv~d~~~~   79 (157)
                      .+.+.|.||+|........-.      ....++-++||.|.+-.
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G  225 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG  225 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC
Confidence            467899999997654321111      12245778999997644

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG0467|consensus

Probab=97.46  E-value=0.00036  Score=55.89  Aligned_cols=98  Identities=23%  Similarity=0.318  Sum_probs=64.7

Q ss_pred             CCChhhhHhhhhcc------------cccccc--cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCE
Q psy1873           5 SVGKSSLSIQFVDG------------QFVDSY--DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHG   69 (157)
Q Consensus         5 ~~GKssli~~~~~~------------~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   69 (157)
                      .-|||||...|+..            +|.+..  ..+.+.+- ...+..-.+.+.+.++|.||+-+|........+=+|+
T Consensus        19 dhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d~   98 (887)
T KOG0467|consen   19 DHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDG   98 (887)
T ss_pred             cCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcCC
Confidence            35999999988631            222111  11222111 2222333466889999999999999998888888999


Q ss_pred             EEEEEECCChhhHH---HHHH-HHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCC
Q psy1873          70 YVLVYSITSHKSFE---VVQI-LYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD  124 (157)
Q Consensus        70 ~ilv~d~~~~~s~~---~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~D  124 (157)
                      +++..|+...-..+   -+++ |.+.                      ..+++|.||+|
T Consensus        99 alvlvdvvegv~~qt~~vlrq~~~~~----------------------~~~~lvinkid  135 (887)
T KOG0467|consen   99 ALVLVDVVEGVCSQTYAVLRQAWIEG----------------------LKPILVINKID  135 (887)
T ss_pred             cEEEEeeccccchhHHHHHHHHHHcc----------------------CceEEEEehhh
Confidence            99999998754433   2332 2222                      66889999999

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.44  E-value=0.00034  Score=53.19  Aligned_cols=17  Identities=24%  Similarity=0.493  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      ||+.||||||++.++..
T Consensus       197 vGpnG~GKTTtlakLA~  213 (420)
T PRK14721        197 IGPTGVGKTTTTAKLAA  213 (420)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999988754

>KOG0448|consensus

Probab=97.44  E-value=0.0022  Score=50.99  Aligned_cols=94  Identities=19%  Similarity=0.250  Sum_probs=53.2

Q ss_pred             EEEEEeCCCCccCc---CchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEE
Q psy1873          44 DLKLVDTAGQDEYS---IFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG  120 (157)
Q Consensus        44 ~~~i~D~~g~~~~~---~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~  120 (157)
                      .+.+.|.||-.--.   .-...+..++|++|+|....+..... .++++......    .             .-+.|+-
T Consensus       207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~s-ek~Ff~~vs~~----K-------------pniFIln  268 (749)
T KOG0448|consen  207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLS-EKQFFHKVSEE----K-------------PNIFILN  268 (749)
T ss_pred             cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHH-HHHHHHHhhcc----C-------------CcEEEEe
Confidence            34567777754332   33556778899999997765443322 23444443333    1             5578888


Q ss_pred             eCCCCCCCceecHHHHHHHHHHhC--------CcEEEeccccC
Q psy1873         121 NKKDLHMERMISYDEGKRLAESWK--------AGFVEASAKQD  155 (157)
Q Consensus       121 nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~e~Sa~~~  155 (157)
                      ||+|.....+-..++..+-.++++        =-+|.+||++-
T Consensus       269 nkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e~  311 (749)
T KOG0448|consen  269 NKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKEV  311 (749)
T ss_pred             chhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccch
Confidence            999986543333333333322332        14778887654

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.33  E-value=0.0036  Score=42.04  Aligned_cols=86  Identities=16%  Similarity=0.092  Sum_probs=59.0

Q ss_pred             eEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEE
Q psy1873          41 QDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG  120 (157)
Q Consensus        41 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~  120 (157)
                      ..+.+.+.|+++....  .....+..+|.++++...+ ..++..+.+.++.+...    .             .|+.+|.
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~----~-------------~~~~vV~  150 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF----G-------------IPVGVVI  150 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc----C-------------CCEEEEE
Confidence            4578899999865422  3345568899999998876 44666666666544322    1             6788999


Q ss_pred             eCCCCCCCceecHHHHHHHHHHhCCcEEE
Q psy1873         121 NKKDLHMERMISYDEGKRLAESWKAGFVE  149 (157)
Q Consensus       121 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e  149 (157)
                      ||.|....   ...+..++++..+++++-
T Consensus       151 N~~~~~~~---~~~~~~~~~~~~~~~vl~  176 (179)
T cd03110         151 NKYDLNDE---IAEEIEDYCEEEGIPILG  176 (179)
T ss_pred             eCCCCCcc---hHHHHHHHHHHcCCCeEE
Confidence            99996432   345677888888887653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.32  E-value=0.001  Score=45.61  Aligned_cols=84  Identities=23%  Similarity=0.133  Sum_probs=45.4

Q ss_pred             EEEEEEeCCCCccCcCc----hhhh--ccCCCEEEEEEECCChh-hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc
Q psy1873          43 YDLKLVDTAGQDEYSIF----PAQY--SMDIHGYVLVYSITSHK-SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP  115 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~~----~~~~--~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p  115 (157)
                      +.+.+.||+|...+...    ...+  ....+-+++|.|.+... ..+.+..+.    ...                 .+
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~----~~~-----------------~~  142 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFY----EAF-----------------GI  142 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH----HHS-----------------ST
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHh----hcc-----------------cC
Confidence            56889999997654421    1111  11456678888877543 333333222    221                 23


Q ss_pred             EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873         116 IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus       116 ~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                      --+|.||.|....    ...+..++...++|.-.+|
T Consensus       143 ~~lIlTKlDet~~----~G~~l~~~~~~~~Pi~~it  174 (196)
T PF00448_consen  143 DGLILTKLDETAR----LGALLSLAYESGLPISYIT  174 (196)
T ss_dssp             CEEEEESTTSSST----THHHHHHHHHHTSEEEEEE
T ss_pred             ceEEEEeecCCCC----cccceeHHHHhCCCeEEEE
Confidence            4577999996332    2345566666777654443

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.32  E-value=0.002  Score=47.52  Aligned_cols=17  Identities=24%  Similarity=0.544  Sum_probs=15.2

Q ss_pred             CCCCCChhhhHhhhhcc
Q psy1873           2 GYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         2 G~~~~GKssli~~~~~~   18 (157)
                      |.-|+|||||+++++..
T Consensus        11 GFLGaGKTTll~~ll~~   27 (318)
T PRK11537         11 GFLGAGKTTLLRHILNE   27 (318)
T ss_pred             ECCCCCHHHHHHHHHhc
Confidence            78899999999999854

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.31  E-value=0.0033  Score=49.20  Aligned_cols=85  Identities=19%  Similarity=0.182  Sum_probs=44.7

Q ss_pred             EEEEEEEeCCCCccCcCchh----hh--ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc
Q psy1873          42 DYDLKLVDTAGQDEYSIFPA----QY--SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP  115 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~----~~--~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p  115 (157)
                      .+.+.|+|++|.........    .+  ... ...++|.+.+.  +...+...+..+..    .              .+
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~-~a~lLVLpAts--s~~Dl~eii~~f~~----~--------------~~  486 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQ-VTSLLVLPANA--HFSDLDEVVRRFAH----A--------------KP  486 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHHhhc-CCcEEEEECCC--ChhHHHHHHHHHHh----h--------------CC
Confidence            46788999999654332111    00  111 23456666653  23444333333321    1              45


Q ss_pred             EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873         116 IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus       116 ~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                      .-+|.||.|...    ....+.......++|+..++
T Consensus       487 ~gvILTKlDEt~----~lG~aLsv~~~~~LPI~yvt  518 (559)
T PRK12727        487 QGVVLTKLDETG----RFGSALSVVVDHQMPITWVT  518 (559)
T ss_pred             eEEEEecCcCcc----chhHHHHHHHHhCCCEEEEe
Confidence            679999999632    22455556666676554443

>KOG0447|consensus

Probab=97.26  E-value=0.0021  Score=50.26  Aligned_cols=82  Identities=16%  Similarity=0.158  Sum_probs=52.2

Q ss_pred             EEEEEEeCCCC-------------ccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCC
Q psy1873          43 YDLKLVDTAGQ-------------DEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTS  109 (157)
Q Consensus        43 ~~~~i~D~~g~-------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~  109 (157)
                      -+..+.|.||-             +....+.+.++.+.+++|+|+-=.   |.+.-+.....+...+...+         
T Consensus       412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~G---------  479 (980)
T KOG0447|consen  412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHG---------  479 (980)
T ss_pred             ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCC---------
Confidence            35678899983             222346778999999999997311   22222233334444444443         


Q ss_pred             CCCCCcEEEEEeCCCCCCCceecHHHHHHHH
Q psy1873         110 CVSSVPIVLVGNKKDLHMERMISYDEGKRLA  140 (157)
Q Consensus       110 ~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~  140 (157)
                          ...++|.+|.|+.+...-++...++..
T Consensus       480 ----rRTIfVLTKVDlAEknlA~PdRI~kIl  506 (980)
T KOG0447|consen  480 ----RRTIFVLTKVDLAEKNVASPSRIQQII  506 (980)
T ss_pred             ----CeeEEEEeecchhhhccCCHHHHHHHH
Confidence                778999999999776555666655544

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.24  E-value=0.0026  Score=47.96  Aligned_cols=17  Identities=24%  Similarity=0.405  Sum_probs=14.7

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      |||.||||||-+.+|..
T Consensus       209 VGPTGVGKTTTlAKLAa  225 (407)
T COG1419         209 VGPTGVGKTTTLAKLAA  225 (407)
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            79999999999988753

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.23  E-value=0.0023  Score=34.62  Aligned_cols=43  Identities=16%  Similarity=0.272  Sum_probs=25.7

Q ss_pred             CCEEEEEEECCChhh--HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCC
Q psy1873          67 IHGYVLVYSITSHKS--FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD  124 (157)
Q Consensus        67 ~~~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~D  124 (157)
                      .+++++++|.+..-.  +++=...+..+...-..               .|+++|.||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~---------------~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN---------------KPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT---------------S-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC---------------CCEEEEEeccC
Confidence            367999999997543  44444555566555432               99999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.21  E-value=0.0047  Score=45.58  Aligned_cols=89  Identities=20%  Similarity=0.135  Sum_probs=48.9

Q ss_pred             EEEEEEeCCCCccCcCchhhhccC--------CCEEEEEEECCChhhHHH-HHHHHHHHHHHhccccCCCCCCCCCCCCC
Q psy1873          43 YDLKLVDTAGQDEYSIFPAQYSMD--------IHGYVLVYSITSHKSFEV-VQILYDKLLDMTGKIQNSSVKSPTSCVSS  113 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~~~~~~~~~--------~~~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  113 (157)
                      ....++++.|-..-.+....++..        .|+++-+.|...-..... +...   +..+..                
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~---~~~Qia----------------  145 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAEL---AEDQLA----------------  145 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHH---HHHHHH----------------
Confidence            445667777755443333333221        266788888654433221 2111   222221                


Q ss_pred             CcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcEEEecc
Q psy1873         114 VPIVLVGNKKDLHMERMISYDEGKRLAESWK--AGFVEASA  152 (157)
Q Consensus       114 ~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~e~Sa  152 (157)
                      ..=+|+.||.|+.+...  .+..+...+.++  ++++++|.
T Consensus       146 ~AD~ivlNK~Dlv~~~~--l~~l~~~l~~lnp~A~i~~~~~  184 (323)
T COG0523         146 FADVIVLNKTDLVDAEE--LEALEARLRKLNPRARIIETSY  184 (323)
T ss_pred             hCcEEEEecccCCCHHH--HHHHHHHHHHhCCCCeEEEccc
Confidence            34589999999987654  344555555555  67887775

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.21  E-value=0.0021  Score=42.05  Aligned_cols=38  Identities=16%  Similarity=0.236  Sum_probs=24.6

Q ss_pred             EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhH
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSF   82 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~   82 (157)
                      .+.+.+.|++|....   ...++..+|-++++-..+-.+.+
T Consensus        91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y  128 (148)
T cd03114          91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDI  128 (148)
T ss_pred             CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHH
Confidence            467888999885422   23477888888887665533333

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.19  E-value=0.0032  Score=37.26  Aligned_cols=75  Identities=15%  Similarity=0.113  Sum_probs=44.3

Q ss_pred             CCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc-hhhhccCCCEEEEEEECCChh
Q psy1873           2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF-PAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         2 G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      |.+|+|||++...+...--..      +   .+...++    .+.+.|+++....... .......++.++++.+.+ ..
T Consensus         6 g~~G~Gktt~~~~l~~~l~~~------g---~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~-~~   71 (99)
T cd01983           6 GKGGVGKTTLAANLAAALAKR------G---KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPE-AL   71 (99)
T ss_pred             CCCCCCHHHHHHHHHHHHHHC------C---CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCc-hh
Confidence            677999999998876432110      1   1222233    5788999876543332 244556778888887765 44


Q ss_pred             hHHHHHHHHH
Q psy1873          81 SFEVVQILYD   90 (157)
Q Consensus        81 s~~~~~~~~~   90 (157)
                      +.........
T Consensus        72 ~~~~~~~~~~   81 (99)
T cd01983          72 AVLGARRLTE   81 (99)
T ss_pred             hHHHHHHHHH
Confidence            4444444433

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.18  E-value=0.0032  Score=47.30  Aligned_cols=17  Identities=29%  Similarity=0.528  Sum_probs=15.3

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++||||||++.+|..
T Consensus       143 vGptGvGKTTtiakLA~  159 (374)
T PRK14722        143 MGPTGVGKTTTTAKLAA  159 (374)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999999864

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.18  E-value=0.00087  Score=44.18  Aligned_cols=48  Identities=21%  Similarity=0.306  Sum_probs=34.1

Q ss_pred             CCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCC
Q psy1873           2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTA   51 (157)
Q Consensus         2 G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~   51 (157)
                      |+|||||||++.++.+.-....  .+++-.+...+.-+++..=|.|.|+.
T Consensus        12 G~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~   59 (179)
T COG1618          12 GRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLA   59 (179)
T ss_pred             CCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEcc
Confidence            8999999999999874322211  33445556677777887788888876

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.15  E-value=0.0019  Score=43.58  Aligned_cols=83  Identities=12%  Similarity=0.074  Sum_probs=44.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEE--EEEeCC-CCccCcCchhhhccCCCEEEE--EEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDL--KLVDTA-GQDEYSIFPAQYSMDIHGYVL--VYS   75 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--~i~D~~-g~~~~~~~~~~~~~~~~~~il--v~d   75 (157)
                      +|+.|+|||||++.+.+-.     .++.|..     .+++..+-+  +-.+.+ |+.+.-.+...+..+.+++++  -..
T Consensus        31 ~G~nGsGKSTLl~~l~Gl~-----~p~~G~i-----~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts  100 (177)
T cd03222          31 VGPNGTGKTTAVKILAGQL-----IPNGDND-----EWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA  100 (177)
T ss_pred             ECCCCChHHHHHHHHHcCC-----CCCCcEE-----EECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence            6999999999999987642     2332321     222222111  111133 334444556667777776555  112


Q ss_pred             CCChhhHHHHHHHHHHHH
Q psy1873          76 ITSHKSFEVVQILYDKLL   93 (157)
Q Consensus        76 ~~~~~s~~~~~~~~~~i~   93 (157)
                      .-|+.+-+.+..++.++.
T Consensus       101 ~LD~~~~~~l~~~l~~~~  118 (177)
T cd03222         101 YLDIEQRLNAARAIRRLS  118 (177)
T ss_pred             cCCHHHHHHHHHHHHHHH
Confidence            234555555666655553

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG0460|consensus

Probab=97.15  E-value=0.0034  Score=46.29  Aligned_cols=136  Identities=18%  Similarity=0.181  Sum_probs=72.9

Q ss_pred             CCCCCCChhhhHhhhhc-------c---ccc--ccc--cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVD-------G---QFV--DSY--DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM   65 (157)
Q Consensus         1 vG~~~~GKssli~~~~~-------~---~~~--~~~--~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   65 (157)
                      ||.-.-|||||-..+..       .   +|.  +..  ....+... ..++.+.-..-.+--.|+||+.+|-...-.--.
T Consensus        60 IGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIKNMItGaa  139 (449)
T KOG0460|consen   60 IGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIKNMITGAA  139 (449)
T ss_pred             cccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHHHhhcCcc
Confidence            57778899999887752       1   111  000  01111111 222233222222345799999887643222223


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce---ecHHHHHHHHHH
Q psy1873          66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM---ISYDEGKRLAES  142 (157)
Q Consensus        66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~---~~~~~~~~~~~~  142 (157)
                      .-|+.|+|...+|..=-+ .++.+  ++...-..              ..++|..||.|+.++.+   +-+-+.+++..+
T Consensus       140 qMDGaILVVaatDG~MPQ-TrEHl--LLArQVGV--------------~~ivvfiNKvD~V~d~e~leLVEmE~RElLse  202 (449)
T KOG0460|consen  140 QMDGAILVVAATDGPMPQ-TREHL--LLARQVGV--------------KHIVVFINKVDLVDDPEMLELVEMEIRELLSE  202 (449)
T ss_pred             ccCceEEEEEcCCCCCcc-hHHHH--HHHHHcCC--------------ceEEEEEecccccCCHHHHHHHHHHHHHHHHH
Confidence            348899999999854322 12211  12222111              44888999999975443   223346667777


Q ss_pred             hC-----CcEEEeccc
Q psy1873         143 WK-----AGFVEASAK  153 (157)
Q Consensus       143 ~~-----~~~~e~Sa~  153 (157)
                      +|     +|++.-||+
T Consensus       203 ~gf~Gd~~PvI~GSAL  218 (449)
T KOG0460|consen  203 FGFDGDNTPVIRGSAL  218 (449)
T ss_pred             cCCCCCCCCeeecchh
Confidence            76     577777664

>KOG1487|consensus

Probab=97.09  E-value=0.0016  Score=46.30  Aligned_cols=83  Identities=22%  Similarity=0.201  Sum_probs=52.5

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCccC----cCc---hhhhccCCCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY----SIF---PAQYSMDIHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~---~~~~~~~~~~~il   72 (157)
                      +|.|.+||||++..+.+-.- ...|..|.-......+.+++  ..+++.|.||.-+-    ..-   .-...+.|+.+++
T Consensus        65 vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartcnli~~  142 (358)
T KOG1487|consen   65 VGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFI  142 (358)
T ss_pred             EecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecccEEEE
Confidence            58899999999999986433 22333333222233333444  56899999984322    111   2223567899999


Q ss_pred             EEECCChhhHHHH
Q psy1873          73 VYSITSHKSFEVV   85 (157)
Q Consensus        73 v~d~~~~~s~~~~   85 (157)
                      |.|+-.|-+-..+
T Consensus       143 vld~~kp~~hk~~  155 (358)
T KOG1487|consen  143 VLDVLKPLSHKKI  155 (358)
T ss_pred             EeeccCcccHHHH
Confidence            9999988765544

>KOG0099|consensus

Probab=97.02  E-value=0.0032  Score=44.81  Aligned_cols=79  Identities=16%  Similarity=0.250  Sum_probs=53.0

Q ss_pred             EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh----------hHHHHHHHHHHHHHHhccccCC
Q psy1873          33 VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK----------SFEVVQILYDKLLDMTGKIQNS  102 (157)
Q Consensus        33 ~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~~  102 (157)
                      ...+.++-  +.++.+|.+||.+-+..|-..|.++-++|+|...++-+          .+++....++.+-+..      
T Consensus       194 et~FqVdk--v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNR------  265 (379)
T KOG0099|consen  194 ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNR------  265 (379)
T ss_pred             eEEEeccc--cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhh------
Confidence            34444443  66899999999999999999999999999988765421          1222222222222211      


Q ss_pred             CCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873         103 SVKSPTSCVSSVPIVLVGNKKDLH  126 (157)
Q Consensus       103 ~~~~~~~~~~~~p~~vv~nK~Dl~  126 (157)
                      |       +..+.+++..||.|+.
T Consensus       266 w-------L~tisvIlFLNKqDll  282 (379)
T KOG0099|consen  266 W-------LRTISVILFLNKQDLL  282 (379)
T ss_pred             H-------HhhhheeEEecHHHHH
Confidence            1       1228899999999984

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=96.94  E-value=0.018  Score=38.34  Aligned_cols=83  Identities=16%  Similarity=0.025  Sum_probs=48.5

Q ss_pred             EEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCC
Q psy1873          44 DLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKK  123 (157)
Q Consensus        44 ~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~  123 (157)
                      .+.++|+++....  .....+..+|.+|++.+.+ ..++..+...+..+... .  .             ....++.|+.
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~-~--~-------------~~~~iv~N~~  124 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPE-ISSLRDADRVKGLLEAL-G--I-------------KVVGVIVNRV  124 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHc-C--C-------------ceEEEEEeCC
Confidence            5789999876433  2344567889999987765 44555555554444331 1  1             4467899999


Q ss_pred             CCCCCceecHHHHHHHHHHhCCcE
Q psy1873         124 DLHMERMISYDEGKRLAESWKAGF  147 (157)
Q Consensus       124 Dl~~~~~~~~~~~~~~~~~~~~~~  147 (157)
                      +....  ...+....+.+.++.++
T Consensus       125 ~~~~~--~~~~~~~~~~~~~~~~v  146 (179)
T cd02036         125 RPDMV--EGGDMVEDIEEILGVPL  146 (179)
T ss_pred             ccccc--chhhHHHHHHHHhCCCE
Confidence            85322  22222344445556543

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>TIGR00959 ffh signal recognition particle protein

Probab=96.93  E-value=0.0031  Score=48.29  Aligned_cols=87  Identities=13%  Similarity=-0.018  Sum_probs=49.5

Q ss_pred             EEEEEEEeCCCCccCcCchhh------hccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQ------YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP  115 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~------~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p  115 (157)
                      .+.+.|.||+|........-.      ..-..+.+++|.|.+..   +.+......+....                 ..
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v-----------------~i  241 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL-----------------GL  241 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC-----------------CC
Confidence            456899999997544321111      12246778999997643   33333333343222                 22


Q ss_pred             EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecc
Q psy1873         116 IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA  152 (157)
Q Consensus       116 ~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  152 (157)
                      .=+|.||.|....    ...+...+...++|+..++.
T Consensus       242 ~giIlTKlD~~~~----~G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       242 TGVVLTKLDGDAR----GGAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             CEEEEeCccCccc----ccHHHHHHHHHCcCEEEEeC
Confidence            3577899995321    12366677777877665543

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=96.87  E-value=0.0017  Score=43.47  Aligned_cols=16  Identities=31%  Similarity=0.551  Sum_probs=13.9

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |++|+|||||+++++.
T Consensus         6 G~pG~GKTTll~k~i~   21 (168)
T PF03266_consen    6 GPPGVGKTTLLKKVIE   21 (168)
T ss_dssp             S-TTSSHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHH
Confidence            8999999999999875

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG3929|consensus

Probab=96.84  E-value=0.00025  Score=50.17  Aligned_cols=75  Identities=12%  Similarity=0.155  Sum_probs=44.2

Q ss_pred             CChhhhHhhhhcccccccccCCccceEEEEEEECC--eEEEEEEEeCCCCccCcCchhh-----hccCCCEEEEEEECCC
Q psy1873           6 VGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNN--QDYDLKLVDTAGQDEYSIFPAQ-----YSMDIHGYVLVYSITS   78 (157)
Q Consensus         6 ~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~-----~~~~~~~~ilv~d~~~   78 (157)
                      -|||++|+++...... ...+|..-+|..-....+  .+-...+|+.+|......+..-     -++.+ .+|++.|+++
T Consensus        54 ~~~tt~I~~~FdR~e~-~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~~-slIL~LDls~  131 (363)
T KOG3929|consen   54 GGKTTIILRCFDRDEP-PKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRTF-SLILVLDLSK  131 (363)
T ss_pred             CceeEeehhhcCcccC-CCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhhh-hheeeeecCC
Confidence            4568888888765433 334666555533333322  2334578999987655544222     22222 4788889999


Q ss_pred             hhhH
Q psy1873          79 HKSF   82 (157)
Q Consensus        79 ~~s~   82 (157)
                      ++.+
T Consensus       132 p~~~  135 (363)
T KOG3929|consen  132 PNDL  135 (363)
T ss_pred             hHHH
Confidence            8764

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.83  E-value=0.011  Score=45.38  Aligned_cols=85  Identities=14%  Similarity=-0.023  Sum_probs=46.1

Q ss_pred             EEEEEEeCCCCccCcCch-----h-hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcE
Q psy1873          43 YDLKLVDTAGQDEYSIFP-----A-QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPI  116 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~~~-----~-~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~  116 (157)
                      ..+.|.||+|......-.     . ...-.++.+++|.|.+...   ++......+....                 ..-
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l-----------------~i~  235 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV-----------------GIG  235 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC-----------------CCC
Confidence            367899999976543211     1 1133567889999976642   2222222221111                 223


Q ss_pred             EEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873         117 VLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus       117 ~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                      -+|.||.|....    .--+...+...++|+..++
T Consensus       236 gvIlTKlD~~a~----~G~~ls~~~~~~~Pi~fig  266 (437)
T PRK00771        236 GIIITKLDGTAK----GGGALSAVAETGAPIKFIG  266 (437)
T ss_pred             EEEEecccCCCc----ccHHHHHHHHHCcCEEEEe
Confidence            577899996321    1335555566676655443

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.82  E-value=0.018  Score=44.17  Aligned_cols=85  Identities=18%  Similarity=0.056  Sum_probs=46.0

Q ss_pred             EEEEEEEeCCCCccCcC----chhhhcc---CCCEEEEEEECCC-hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCC
Q psy1873          42 DYDLKLVDTAGQDEYSI----FPAQYSM---DIHGYVLVYSITS-HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSS  113 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~----~~~~~~~---~~~~~ilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  113 (157)
                      .+.+.+.|++|......    ....++.   ...-+.+|.+.+- ...+..+...+.       ..              
T Consensus       299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~-------~~--------------  357 (424)
T PRK05703        299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS-------RL--------------  357 (424)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC-------CC--------------
Confidence            36788999999755431    1222333   2234566677653 334444332221       11              


Q ss_pred             CcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873         114 VPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus       114 ~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                      .+--+|.||.|-..  .  ......+....++|+..++
T Consensus       358 ~~~~vI~TKlDet~--~--~G~i~~~~~~~~lPv~yit  391 (424)
T PRK05703        358 PLDGLIFTKLDETS--S--LGSILSLLIESGLPISYLT  391 (424)
T ss_pred             CCCEEEEecccccc--c--ccHHHHHHHHHCCCEEEEe
Confidence            22368899999632  1  2346667777787655444

>KOG1534|consensus

Probab=96.80  E-value=0.002  Score=44.38  Aligned_cols=16  Identities=31%  Similarity=0.399  Sum_probs=14.6

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +||.|+||||+++.+.
T Consensus         9 ~GpAgSGKSTyC~~~~   24 (273)
T KOG1534|consen    9 MGPAGSGKSTYCSSMY   24 (273)
T ss_pred             EccCCCCcchHHHHHH
Confidence            5999999999999885

>KOG0465|consensus

Probab=96.80  E-value=0.0025  Score=50.14  Aligned_cols=70  Identities=20%  Similarity=0.301  Sum_probs=52.6

Q ss_pred             eEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEE
Q psy1873          41 QDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG  120 (157)
Q Consensus        41 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~  120 (157)
                      +.+.+.++||||+-+|.--....++--|+.++++|....-.-+... .|.++....                 +|.+...
T Consensus       102 ~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~t-V~rQ~~ry~-----------------vP~i~Fi  163 (721)
T KOG0465|consen  102 RDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTET-VWRQMKRYN-----------------VPRICFI  163 (721)
T ss_pred             ccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHH-HHHHHHhcC-----------------CCeEEEE
Confidence            4688999999999998877778888889999988877654433333 344444443                 9999999


Q ss_pred             eCCCCCCC
Q psy1873         121 NKKDLHME  128 (157)
Q Consensus       121 nK~Dl~~~  128 (157)
                      ||.|....
T Consensus       164 NKmDRmGa  171 (721)
T KOG0465|consen  164 NKMDRMGA  171 (721)
T ss_pred             ehhhhcCC
Confidence            99997543

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.78  E-value=0.0006  Score=47.08  Aligned_cols=17  Identities=29%  Similarity=0.321  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      |||+|||||||++.|-.
T Consensus        39 IGPSGcGKST~LR~lNR   55 (253)
T COG1117          39 IGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            69999999999988743

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.78  E-value=0.00064  Score=47.82  Aligned_cols=17  Identities=29%  Similarity=0.376  Sum_probs=15.5

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      ||++|||||||++-+.+
T Consensus        35 lGpSGcGKSTLLriiAG   51 (248)
T COG1116          35 LGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             ECCCCCCHHHHHHHHhC
Confidence            69999999999999865

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.76  E-value=0.0052  Score=39.04  Aligned_cols=19  Identities=21%  Similarity=0.335  Sum_probs=16.5

Q ss_pred             CCCCCCChhhhHhhhhccc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ   19 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~   19 (157)
                      .|++|+|||++++.+.+.-
T Consensus        25 ~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          25 YGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999998643

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.76  E-value=0.0098  Score=44.87  Aligned_cols=16  Identities=25%  Similarity=0.495  Sum_probs=14.5

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|+.||||||++.++.
T Consensus       212 vGptGvGKTTt~akLA  227 (407)
T PRK12726        212 IGQTGVGKTTTLVKLG  227 (407)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6999999999998885

>KOG0463|consensus

Probab=96.76  E-value=0.00059  Score=50.88  Aligned_cols=17  Identities=29%  Similarity=0.339  Sum_probs=13.8

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      ||+-.+|||||+--+..
T Consensus       139 VGNVDAGKSTLLGVLTH  155 (641)
T KOG0463|consen  139 VGNVDAGKSTLLGVLTH  155 (641)
T ss_pred             EecccCCcceeEeeeee
Confidence            68889999999876653

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.68  E-value=0.00073  Score=42.28  Aligned_cols=18  Identities=28%  Similarity=0.420  Sum_probs=15.8

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++||||||+++.+.+.
T Consensus         5 ~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    5 SGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999763

...

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=96.67  E-value=0.0094  Score=36.62  Aligned_cols=87  Identities=13%  Similarity=0.049  Sum_probs=48.0

Q ss_pred             CCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhh
Q psy1873           2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKS   81 (157)
Q Consensus         2 G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s   81 (157)
                      +..|+||||+...+...--......+..-+.    ... ....+.+.|+++....  .....+..+|.++++.+. +..+
T Consensus         7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~----d~~-~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~-~~~s   78 (106)
T cd03111           7 AKGGVGATTLAANLAVALAKEAGRRVLLVDL----DLQ-FGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQ-DLPS   78 (106)
T ss_pred             CCCCCcHHHHHHHHHHHHHhcCCCcEEEEEC----CCC-CCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecC-ChHH
Confidence            3579999998776642211110001110000    000 0116789999876432  334567788988888765 4666


Q ss_pred             HHHHHHHHHHHHHHh
Q psy1873          82 FEVVQILYDKLLDMT   96 (157)
Q Consensus        82 ~~~~~~~~~~i~~~~   96 (157)
                      +..+.+++..+.+..
T Consensus        79 ~~~~~~~~~~l~~~~   93 (106)
T cd03111          79 IRNAKRLLELLRVLD   93 (106)
T ss_pred             HHHHHHHHHHHHHcC
Confidence            777777666665443

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>KOG0464|consensus

Probab=96.64  E-value=0.00058  Score=51.50  Aligned_cols=104  Identities=16%  Similarity=0.226  Sum_probs=71.3

Q ss_pred             CCChhhhHhhhhc--------ccccccccC--------CccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCC
Q psy1873           5 SVGKSSLSIQFVD--------GQFVDSYDP--------TIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI   67 (157)
Q Consensus         5 ~~GKssli~~~~~--------~~~~~~~~~--------t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   67 (157)
                      .+||||.-.|++.        +.+.....-        ..|... ...+..+.+.+++.++||||+-+|+--....++--
T Consensus        47 dagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~leverclrvl  126 (753)
T KOG0464|consen   47 DAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVL  126 (753)
T ss_pred             cCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHh
Confidence            5799999998763        111111110        111122 44556677889999999999999998888888888


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873          68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH  126 (157)
Q Consensus        68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~  126 (157)
                      |+++.|||.+..-.-+.+..|...     .+..             +|-....||.|..
T Consensus       127 dgavav~dasagve~qtltvwrqa-----dk~~-------------ip~~~finkmdk~  167 (753)
T KOG0464|consen  127 DGAVAVFDASAGVEAQTLTVWRQA-----DKFK-------------IPAHCFINKMDKL  167 (753)
T ss_pred             cCeEEEEeccCCcccceeeeehhc-----cccC-------------Cchhhhhhhhhhh
Confidence            999999999877666666555322     1222             8888888998853

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.63  E-value=0.00092  Score=46.64  Aligned_cols=17  Identities=29%  Similarity=0.278  Sum_probs=15.3

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||++-+-.
T Consensus        37 ~GpSGSGKSTLLniig~   53 (226)
T COG1136          37 VGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            69999999999999854

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.60  E-value=0.0085  Score=46.56  Aligned_cols=17  Identities=29%  Similarity=0.528  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      ||+.||||||++.++..
T Consensus       262 vGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        262 MGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             ECCCCccHHHHHHHHHH
Confidence            69999999999998863

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.60  E-value=0.0013  Score=45.45  Aligned_cols=17  Identities=29%  Similarity=0.309  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +||+|||||||++.+-.
T Consensus        34 iGpSGSGKSTlLRclN~   50 (240)
T COG1126          34 IGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             ECCCCCCHHHHHHHHHC
Confidence            69999999999999864

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=96.59  E-value=0.0012  Score=36.44  Aligned_cols=16  Identities=31%  Similarity=0.283  Sum_probs=14.1

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      .|+.|+|||||+..+.
T Consensus        29 ~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   29 TGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4899999999998874

>KOG3859|consensus

Probab=96.58  E-value=0.0096  Score=42.88  Aligned_cols=52  Identities=23%  Similarity=0.285  Sum_probs=35.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccce-----EEEEEEECCeEEEEEEEeCCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENT-----FVKTTRMNNQDYDLKLVDTAG   52 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~-----~~~~~~~~~~~~~~~i~D~~g   52 (157)
                      ||..|.|||||+..|.+..|.....+.....     ..+.+.-.+-...+.|.||.|
T Consensus        48 vGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   48 VGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             eccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            6999999999999999888865433322211     122333345567889999987

>PRK10867 signal recognition particle protein; Provisional

Probab=96.56  E-value=0.039  Score=42.48  Aligned_cols=87  Identities=13%  Similarity=0.001  Sum_probs=47.5

Q ss_pred             EEEEEEEeCCCCccCcCc-hh---hh--ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc
Q psy1873          42 DYDLKLVDTAGQDEYSIF-PA---QY--SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP  115 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~-~~---~~--~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p  115 (157)
                      .+.+.|.||+|....... ..   .+  .-..+.+++|.|....   +++......+.+..                 ..
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~-----------------~i  242 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL-----------------GL  242 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC-----------------CC
Confidence            367899999997544321 11   11  1245677899987643   33333333333222                 12


Q ss_pred             EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecc
Q psy1873         116 IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA  152 (157)
Q Consensus       116 ~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  152 (157)
                      .-+|.||.|....    ...+.......++|+..++.
T Consensus       243 ~giIlTKlD~~~r----gG~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        243 TGVILTKLDGDAR----GGAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             CEEEEeCccCccc----ccHHHHHHHHHCcCEEEEeC
Confidence            3567799995321    12256666777877665543

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.51  E-value=0.00093  Score=43.01  Aligned_cols=17  Identities=29%  Similarity=0.427  Sum_probs=15.3

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+|||||||++.++..
T Consensus         5 ~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    5 CGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999873

...

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.49  E-value=0.0013  Score=48.64  Aligned_cols=17  Identities=29%  Similarity=0.387  Sum_probs=15.5

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      |||+|||||||++.+.+
T Consensus        35 lGPSGcGKSTlLr~IAG   51 (338)
T COG3839          35 LGPSGCGKSTLLRMIAG   51 (338)
T ss_pred             ECCCCCCHHHHHHHHhC
Confidence            69999999999999865

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=96.44  E-value=0.032  Score=33.85  Aligned_cols=78  Identities=14%  Similarity=0.138  Sum_probs=46.8

Q ss_pred             CCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhH
Q psy1873           3 YRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSF   82 (157)
Q Consensus         3 ~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~   82 (157)
                      ..|+||||+...+...--. .-.+      ...+..+.. +.+.++|+++....  .....+..+|.++++.+. +..++
T Consensus         8 kgG~Gkst~~~~la~~~~~-~~~~------vl~~d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~-~~~s~   76 (104)
T cd02042           8 KGGVGKTTTAVNLAAALAR-RGKR------VLLIDLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP-SPLDL   76 (104)
T ss_pred             CCCcCHHHHHHHHHHHHHh-CCCc------EEEEeCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC-CHHHH
Confidence            4699999998776431110 0001      111112222 67889999886532  233677788999988776 46677


Q ss_pred             HHHHHHHHH
Q psy1873          83 EVVQILYDK   91 (157)
Q Consensus        83 ~~~~~~~~~   91 (157)
                      +.+.+++..
T Consensus        77 ~~~~~~~~~   85 (104)
T cd02042          77 DGLEKLLET   85 (104)
T ss_pred             HHHHHHHHH
Confidence            777666553

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=96.41  E-value=0.015  Score=42.42  Aligned_cols=20  Identities=20%  Similarity=0.190  Sum_probs=18.0

Q ss_pred             CCCCCCChhhhHhhhhcccc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF   20 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~   20 (157)
                      +|++|.|||+++++|.....
T Consensus        67 vG~snnGKT~Ii~rF~~~hp   86 (302)
T PF05621_consen   67 VGDSNNGKTMIIERFRRLHP   86 (302)
T ss_pred             ecCCCCcHHHHHHHHHHHCC
Confidence            69999999999999998654

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.40  E-value=0.024  Score=46.47  Aligned_cols=17  Identities=24%  Similarity=0.475  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      ||+.||||||.+.++..
T Consensus       191 VGpnGvGKTTTiaKLA~  207 (767)
T PRK14723        191 VGPTGVGKTTTTAKLAA  207 (767)
T ss_pred             ECCCCCcHHHHHHHHHh
Confidence            69999999999988863

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.37  E-value=0.0017  Score=46.24  Aligned_cols=17  Identities=29%  Similarity=0.376  Sum_probs=15.5

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      |||.|||||||++.+.+
T Consensus        34 iGpNG~GKSTLLk~l~g   50 (258)
T COG1120          34 LGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            69999999999999865

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.37  E-value=0.002  Score=36.35  Aligned_cols=18  Identities=22%  Similarity=0.386  Sum_probs=15.7

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+||||+.+.+...
T Consensus         5 ~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           5 TGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998753

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.36  E-value=0.0013  Score=44.36  Aligned_cols=19  Identities=32%  Similarity=0.482  Sum_probs=16.8

Q ss_pred             CCCCCCChhhhHhhhhccc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ   19 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~   19 (157)
                      .||+|||||||+.+++...
T Consensus        10 sgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194          10 SGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ECCCCCCHHHHHHHHHhhc
Confidence            3999999999999998765

>KOG2484|consensus

Probab=96.33  E-value=0.0017  Score=48.64  Aligned_cols=49  Identities=22%  Similarity=0.436  Sum_probs=31.9

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQ   53 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~   53 (157)
                      ||.|||||||+||+|...+. .....|++... ...+..+   -.+.+.|.||.
T Consensus       258 iG~PNVGKSSvINsL~~~k~C~vg~~pGvT~s-mqeV~Ld---k~i~llDsPgi  307 (435)
T KOG2484|consen  258 IGYPNVGKSSVINSLKRRKACNVGNVPGVTRS-MQEVKLD---KKIRLLDSPGI  307 (435)
T ss_pred             ecCCCCChhHHHHHHHHhccccCCCCccchhh-hhheecc---CCceeccCCce
Confidence            69999999999999987765 34444554321 1222222   23578999884

>PRK08118 topology modulation protein; Reviewed

Probab=96.32  E-value=0.0018  Score=43.24  Aligned_cols=17  Identities=35%  Similarity=0.509  Sum_probs=15.3

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||...+.+
T Consensus         7 ~G~~GsGKSTlak~L~~   23 (167)
T PRK08118          7 IGSGGSGKSTLARQLGE   23 (167)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998864

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.32  E-value=0.002  Score=40.63  Aligned_cols=19  Identities=21%  Similarity=0.323  Sum_probs=16.5

Q ss_pred             CCCCCCChhhhHhhhhccc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ   19 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~   19 (157)
                      +|++|+|||+++..+...-
T Consensus         8 ~G~~G~GKTtl~~~l~~~~   26 (148)
T smart00382        8 VGPPGSGKTTLARALAREL   26 (148)
T ss_pred             ECCCCCcHHHHHHHHHhcc
Confidence            5999999999999997643

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.32  E-value=0.0015  Score=41.78  Aligned_cols=18  Identities=28%  Similarity=0.292  Sum_probs=15.9

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus        17 ~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   17 VGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             EESTTSSHHHHHHHHTTS
T ss_pred             EccCCCccccceeeeccc
Confidence            599999999999998763

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.30  E-value=0.0019  Score=48.01  Aligned_cols=17  Identities=24%  Similarity=0.374  Sum_probs=15.5

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +||+||||||+++.+.+
T Consensus        37 LGPSGcGKTTlLR~IAG   53 (352)
T COG3842          37 LGPSGCGKTTLLRMIAG   53 (352)
T ss_pred             ECCCCCCHHHHHHHHhC
Confidence            69999999999999865

>KOG0780|consensus

Probab=96.30  E-value=0.004  Score=46.66  Aligned_cols=43  Identities=14%  Similarity=0.271  Sum_probs=28.6

Q ss_pred             CeEEEEEEEeCCCCccCcCchhhh------ccCCCEEEEEEECCChhhH
Q psy1873          40 NQDYDLKLVDTAGQDEYSIFPAQY------SMDIHGYVLVYSITSHKSF   82 (157)
Q Consensus        40 ~~~~~~~i~D~~g~~~~~~~~~~~------~~~~~~~ilv~d~~~~~s~   82 (157)
                      ...+.+.|.||+|......-....      .-..|-+|+|.|.+-...-
T Consensus       181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaa  229 (483)
T KOG0780|consen  181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAA  229 (483)
T ss_pred             hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhH
Confidence            346889999999976554322211      2345889999998866543

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.30  E-value=0.002  Score=43.73  Aligned_cols=18  Identities=33%  Similarity=0.377  Sum_probs=15.9

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+...
T Consensus         8 ~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          8 MGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             ECCCCCCHHHHHHHHhcc
Confidence            699999999999999653

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.29  E-value=0.0022  Score=40.45  Aligned_cols=18  Identities=22%  Similarity=0.298  Sum_probs=15.9

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||++++.+.+.
T Consensus         4 ~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    4 HGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             ESSTTSSHHHHHHHHHHH
T ss_pred             ECcCCCCeeHHHHHHHhh
Confidence            499999999999999764

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK07261 topology modulation protein; Provisional

Probab=96.25  E-value=0.0021  Score=43.09  Aligned_cols=17  Identities=35%  Similarity=0.700  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|+|||||...+..
T Consensus         6 ~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          6 IGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            69999999999998864

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.24  E-value=0.0021  Score=39.57  Aligned_cols=16  Identities=25%  Similarity=0.681  Sum_probs=14.6

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|++|+|||||++.+.
T Consensus        21 ~GpSGsGKSTLl~~l~   36 (107)
T cd00820          21 TGDSGIGKTELALELI   36 (107)
T ss_pred             EcCCCCCHHHHHHHhh
Confidence            5999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=96.24  E-value=0.0025  Score=42.37  Aligned_cols=18  Identities=28%  Similarity=0.455  Sum_probs=15.7

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||.+.+.+.
T Consensus         1 ~G~sGsGKSTla~~la~~   18 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQ   18 (163)
T ss_pred             CCCCCCcHHHHHHHHHHH
Confidence            799999999999988653

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.24  E-value=0.0021  Score=43.38  Aligned_cols=18  Identities=28%  Similarity=0.471  Sum_probs=16.4

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+||+||||+..++.+.
T Consensus         6 lG~pGaGK~T~A~~La~~   23 (178)
T COG0563           6 LGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            699999999999999765

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.24  E-value=0.0022  Score=44.29  Aligned_cols=18  Identities=22%  Similarity=0.350  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||+++|...
T Consensus        19 ~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         19 SGPSGVGKDAVLARMRER   36 (206)
T ss_pred             ECcCCCCHHHHHHHHHhc
Confidence            599999999999999754

>KOG0066|consensus

Probab=96.22  E-value=0.024  Score=43.64  Aligned_cols=54  Identities=17%  Similarity=0.176  Sum_probs=33.8

Q ss_pred             EEEEEEeCCC-CccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhc
Q psy1873          43 YDLKLVDTAG-QDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTG   97 (157)
Q Consensus        43 ~~~~i~D~~g-~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~   97 (157)
                      ..+.|-|.+| |.....+....+...|++|+= ..++--.++.+...-+.|.+...
T Consensus       698 HTikikdLSGGQKaRValaeLal~~PDvlILD-EPTNNLDIESIDALaEAIney~G  752 (807)
T KOG0066|consen  698 HTIKIKDLSGGQKARVALAELALGGPDVLILD-EPTNNLDIESIDALAEAINEYNG  752 (807)
T ss_pred             ceEeeeecCCcchHHHHHHHHhcCCCCEEEec-CCCCCcchhhHHHHHHHHHhccC
Confidence            4678899876 555556788889999977764 33433345555554455555443

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=96.19  E-value=0.02  Score=44.17  Aligned_cols=17  Identities=29%  Similarity=0.429  Sum_probs=15.3

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|..|+|||||++.+.+
T Consensus        36 LGENGAGKSTLm~iL~G   52 (501)
T COG3845          36 LGENGAGKSTLMKILFG   52 (501)
T ss_pred             eccCCCCHHHHHHHHhC
Confidence            69999999999999864

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.16  E-value=0.0025  Score=42.79  Aligned_cols=18  Identities=22%  Similarity=0.150  Sum_probs=15.7

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+...
T Consensus         7 ~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         7 VGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999998653

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.14  E-value=0.0026  Score=41.00  Aligned_cols=18  Identities=33%  Similarity=0.486  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus         5 ~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           5 SGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             ECCCCCCHHHHHHHHHhc
Confidence            599999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.14  E-value=0.003  Score=42.93  Aligned_cols=18  Identities=17%  Similarity=0.233  Sum_probs=16.3

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||+++++..
T Consensus        10 ~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737         10 SSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             ECCCCCCHHHHHHHHHhc
Confidence            599999999999999864

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.11  E-value=0.0028  Score=42.71  Aligned_cols=16  Identities=25%  Similarity=0.337  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|++||||||+++++.
T Consensus         9 ~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         9 VGGPGSGKGTQCEKIV   24 (188)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999987

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.07  E-value=0.0027  Score=42.60  Aligned_cols=18  Identities=17%  Similarity=0.429  Sum_probs=15.9

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||+.+++..
T Consensus        12 vG~sgsGKTTLi~~li~~   29 (173)
T PRK10751         12 AAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             ECCCCChHHHHHHHHHHH
Confidence            599999999999999753

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.03  E-value=0.0034  Score=42.16  Aligned_cols=18  Identities=33%  Similarity=0.475  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+.+.
T Consensus         7 ~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         7 SGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             ECCCCCCHHHHHHHHHcc
Confidence            599999999999999863

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.03  E-value=0.003  Score=43.17  Aligned_cols=17  Identities=18%  Similarity=0.444  Sum_probs=15.3

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|||||||++.+.+
T Consensus         5 ~G~~GsGKSTl~~~l~~   21 (198)
T cd02023           5 AGGSGSGKTTVAEEIIE   21 (198)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999865

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.01  E-value=0.0034  Score=43.55  Aligned_cols=18  Identities=28%  Similarity=0.176  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus        36 ~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          36 VGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             EcCCCCCHHHHHHHHhCC
Confidence            699999999999999864

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.99  E-value=0.0033  Score=42.35  Aligned_cols=16  Identities=31%  Similarity=0.337  Sum_probs=14.6

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|++|+|||||++.+.
T Consensus        27 ~G~nG~GKSTLl~~il   42 (176)
T cd03238          27 TGVSGSGKSTLVNEGL   42 (176)
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            5999999999999875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=95.99  E-value=0.03  Score=37.58  Aligned_cols=44  Identities=18%  Similarity=0.021  Sum_probs=26.7

Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873          68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM  127 (157)
Q Consensus        68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~  127 (157)
                      |+++++.|..++.+-..  ..+.++.. .....             .|+++|.||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~--~~i~~~~~-l~~~~-------------kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC--PQVEEAVL-QAGGN-------------KKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC--HHHHHHHH-hccCC-------------CCEEEEEehhhcCC
Confidence            68999999988643211  11112211 11111             89999999999954

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=95.97  E-value=0.0026  Score=41.22  Aligned_cols=18  Identities=22%  Similarity=0.525  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||+..+++.
T Consensus         6 vG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    6 VGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999763

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=95.97  E-value=0.0031  Score=39.58  Aligned_cols=17  Identities=18%  Similarity=0.481  Sum_probs=15.2

Q ss_pred             CCCCCChhhhHhhhhcc
Q psy1873           2 GYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         2 G~~~~GKssli~~~~~~   18 (157)
                      |.+||||||+++.|...
T Consensus         5 G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    5 GIPGSGKTTIAKELAER   21 (129)
T ss_dssp             ESTTSSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            89999999999998754

...

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.96  E-value=0.0036  Score=42.86  Aligned_cols=17  Identities=24%  Similarity=0.354  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||+|-+.+
T Consensus        37 lGpSGcGKTTLLnl~AG   53 (259)
T COG4525          37 LGPSGCGKTTLLNLIAG   53 (259)
T ss_pred             EcCCCccHHHHHHHHhc
Confidence            69999999999998754

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.95  E-value=0.0038  Score=43.08  Aligned_cols=18  Identities=28%  Similarity=0.218  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus        33 ~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225          33 VGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            699999999999999864

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=95.93  E-value=0.0035  Score=42.00  Aligned_cols=17  Identities=35%  Similarity=0.468  Sum_probs=13.7

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|+|||+|++++..
T Consensus        30 ~G~~G~GKT~ll~~~~~   46 (185)
T PF13191_consen   30 TGESGSGKTSLLRALLD   46 (185)
T ss_dssp             -B-TTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998864

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.91  E-value=0.03  Score=40.35  Aligned_cols=84  Identities=19%  Similarity=0.057  Sum_probs=45.2

Q ss_pred             EEEEEEEeCCCCccCcCc----hhhhc--cCCCEEEEEEECC-ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCC
Q psy1873          42 DYDLKLVDTAGQDEYSIF----PAQYS--MDIHGYVLVYSIT-SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSV  114 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~----~~~~~--~~~~~~ilv~d~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  114 (157)
                      .+.+.+.|++|.......    +..++  ...+-++||.|.+ ..+..   ..++..+.. .                 .
T Consensus       154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~---~~~~~~f~~-~-----------------~  212 (270)
T PRK06731        154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM---IEIITNFKD-I-----------------H  212 (270)
T ss_pred             CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHH---HHHHHHhCC-C-----------------C
Confidence            467889999998654321    11122  2345678888875 33333   223333221 1                 4


Q ss_pred             cEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873         115 PIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA  150 (157)
Q Consensus       115 p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  150 (157)
                      +--+|.||.|-..  .  .-.+..++...++|+..+
T Consensus       213 ~~~~I~TKlDet~--~--~G~~l~~~~~~~~Pi~~i  244 (270)
T PRK06731        213 IDGIVFTKFDETA--S--SGELLKIPAVSSAPIVLM  244 (270)
T ss_pred             CCEEEEEeecCCC--C--ccHHHHHHHHHCcCEEEE
Confidence            4568889999643  1  233455555666655443

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=95.91  E-value=0.0033  Score=39.75  Aligned_cols=18  Identities=22%  Similarity=0.294  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||++++++...
T Consensus        10 ~G~~G~GKT~~~~~~~~~   27 (131)
T PF13401_consen   10 SGPPGSGKTTLIKRLARQ   27 (131)
T ss_dssp             EE-TTSSHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            489999999999999864

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=95.89  E-value=0.0042  Score=42.18  Aligned_cols=18  Identities=28%  Similarity=0.425  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus        24 ~G~nGsGKSTLl~~i~G~   41 (190)
T TIGR01166        24 LGANGAGKSTLLLHLNGL   41 (190)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999998763

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.88  E-value=0.004  Score=42.79  Aligned_cols=18  Identities=22%  Similarity=0.305  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus        32 ~G~nGsGKSTLl~~l~Gl   49 (205)
T cd03226          32 TGKNGAGKTTLAKILAGL   49 (205)
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999864

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=95.88  E-value=0.004  Score=43.13  Aligned_cols=18  Identities=22%  Similarity=0.268  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus        35 ~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        35 VGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999999864

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.88  E-value=0.0042  Score=43.64  Aligned_cols=18  Identities=33%  Similarity=0.311  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus        32 ~G~nGsGKSTLl~~l~G~   49 (235)
T cd03261          32 IGPSGSGKSTLLRLIVGL   49 (235)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999999864

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00235 udk uridine kinase

Probab=95.88  E-value=0.0039  Score=42.99  Aligned_cols=17  Identities=18%  Similarity=0.309  Sum_probs=15.3

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||++.+.+
T Consensus        12 ~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235        12 GGGSGSGKTTVARKIYE   28 (207)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999874

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=95.87  E-value=0.0041  Score=42.93  Aligned_cols=18  Identities=22%  Similarity=0.296  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+-
T Consensus        31 ~G~nGsGKSTLl~~l~Gl   48 (211)
T cd03264          31 LGPNGAGKTTLMRILATL   48 (211)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999999863

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=95.87  E-value=0.0042  Score=43.68  Aligned_cols=18  Identities=28%  Similarity=0.318  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      ||++|||||||.+.+.+-
T Consensus        39 vGeSGsGKSTL~r~l~Gl   56 (252)
T COG1124          39 VGESGSGKSTLARLLAGL   56 (252)
T ss_pred             EcCCCCCHHHHHHHHhcc
Confidence            699999999999999763

>PRK08233 hypothetical protein; Provisional

Probab=95.86  E-value=0.0046  Score=41.44  Aligned_cols=17  Identities=18%  Similarity=0.298  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|.+|||||||.+++..
T Consensus         9 ~G~~GsGKtTla~~L~~   25 (182)
T PRK08233          9 AAVSGGGKTTLTERLTH   25 (182)
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            39999999999999875

>KOG2485|consensus

Probab=95.86  E-value=0.01  Score=43.19  Aligned_cols=52  Identities=25%  Similarity=0.383  Sum_probs=29.8

Q ss_pred             CCCCCCChhhhHhhhhccccc------ccccCCccceEEEEEEECCeEEEEEEEeCCCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV------DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQ   53 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~   53 (157)
                      ||=||||||||+|.+...+..      ....+.+.......+.+.+.. .+.+.|++|.
T Consensus       149 vGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  149 VGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             EcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence            689999999999988643321      122222222222223333333 2678999995

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.86  E-value=0.003  Score=40.54  Aligned_cols=17  Identities=24%  Similarity=0.464  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|+|||+|+..+..
T Consensus         5 ~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    5 VGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EESSSSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998874

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF13173 AAA_14: AAA domain

Probab=95.86  E-value=0.0043  Score=39.39  Aligned_cols=19  Identities=37%  Similarity=0.489  Sum_probs=16.3

Q ss_pred             CCCCCCChhhhHhhhhccc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ   19 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~   19 (157)
                      .|+.+||||||+.++...-
T Consensus         8 ~G~R~vGKTtll~~~~~~~   26 (128)
T PF13173_consen    8 TGPRGVGKTTLLKQLAKDL   26 (128)
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999998643

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=95.83  E-value=0.0045  Score=42.67  Aligned_cols=18  Identities=17%  Similarity=0.220  Sum_probs=16.3

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus        32 ~G~nGsGKSTLl~~l~G~   49 (210)
T cd03269          32 LGPNGAGKTTTIRMILGI   49 (210)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999999864

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=95.82  E-value=0.0046  Score=43.63  Aligned_cols=18  Identities=28%  Similarity=0.206  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus        34 ~G~nGsGKSTLl~~l~Gl   51 (243)
T TIGR02315        34 IGPSGAGKSTLLRCINRL   51 (243)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999998763

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=95.81  E-value=0.0047  Score=43.15  Aligned_cols=17  Identities=29%  Similarity=0.317  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|||||||++.+.+
T Consensus         5 ~G~sGSGKTTla~~L~~   21 (220)
T cd02025           5 AGSVAVGKSTTARVLQA   21 (220)
T ss_pred             eCCCCCCHHHHHHHHHH
Confidence            49999999999998864

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=95.79  E-value=0.0047  Score=42.93  Aligned_cols=18  Identities=22%  Similarity=0.359  Sum_probs=15.9

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus        32 ~G~nGsGKSTLl~~l~Gl   49 (222)
T cd03224          32 LGRNGAGKTTLLKTIMGL   49 (222)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999988764

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=95.78  E-value=0.0047  Score=42.94  Aligned_cols=18  Identities=28%  Similarity=0.246  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus        36 ~G~nGsGKSTLl~~l~Gl   53 (220)
T cd03293          36 VGPSGCGKSTLLRIIAGL   53 (220)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999999864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=95.78  E-value=0.0047  Score=42.92  Aligned_cols=18  Identities=17%  Similarity=0.211  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+.
T Consensus        32 ~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          32 LGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999998864

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=95.77  E-value=0.0049  Score=42.55  Aligned_cols=18  Identities=28%  Similarity=0.117  Sum_probs=16.3

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus        32 ~G~nGsGKSTLl~~l~G~   49 (213)
T cd03262          32 IGPSGSGKSTLLRCINLL   49 (213)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999999864

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=95.76  E-value=0.0036  Score=40.89  Aligned_cols=17  Identities=18%  Similarity=0.354  Sum_probs=15.5

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+|||||+|+..++..
T Consensus         2 ~G~PgsGK~t~~~~la~   18 (151)
T PF00406_consen    2 LGPPGSGKGTQAKRLAK   18 (151)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             cCCCCCChHHHHHHHHH
Confidence            69999999999999875

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=95.76  E-value=0.005  Score=42.71  Aligned_cols=18  Identities=17%  Similarity=0.217  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+-
T Consensus        19 ~G~NGsGKSTLlk~i~Gl   36 (213)
T PRK15177         19 LAAPGSGKTTLTRLLCGL   36 (213)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999998864

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=95.75  E-value=0.0052  Score=42.21  Aligned_cols=18  Identities=28%  Similarity=0.106  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus        30 ~G~nGsGKSTLl~~l~G~   47 (206)
T TIGR03608        30 IGESGSGKSTLLNIIGLL   47 (206)
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999864

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=95.74  E-value=0.0059  Score=37.57  Aligned_cols=17  Identities=29%  Similarity=0.530  Sum_probs=15.0

Q ss_pred             CCCCCChhhhHhhhhcc
Q psy1873           2 GYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         2 G~~~~GKssli~~~~~~   18 (157)
                      |++|+|||+|++.|+..
T Consensus         5 G~~G~GKS~l~~~l~~~   21 (107)
T PF00910_consen    5 GPPGIGKSTLAKELAKD   21 (107)
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999998643

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=95.74  E-value=0.005  Score=42.58  Aligned_cols=18  Identities=22%  Similarity=0.292  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus        34 ~G~nGsGKSTLl~~i~Gl   51 (214)
T TIGR02673        34 TGPSGAGKTTLLKLLYGA   51 (214)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999998764

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=95.73  E-value=0.023  Score=36.50  Aligned_cols=18  Identities=28%  Similarity=0.462  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|+.|+|||||++.+.+.
T Consensus        28 ~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        28 KGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            499999999999999865

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=95.73  E-value=0.0053  Score=42.44  Aligned_cols=18  Identities=22%  Similarity=0.261  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+.
T Consensus        32 ~G~nGsGKSTLl~~l~G~   49 (213)
T cd03259          32 LGPSGCGKTTLLRLIAGL   49 (213)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999998863

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=95.72  E-value=0.0051  Score=42.48  Aligned_cols=18  Identities=28%  Similarity=0.311  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus        33 ~G~nGsGKSTLl~~l~G~   50 (214)
T cd03292          33 VGPSGAGKSTLLKLIYKE   50 (214)
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999864

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=95.72  E-value=0.0051  Score=40.62  Aligned_cols=18  Identities=28%  Similarity=0.473  Sum_probs=15.6

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++||||||+.+.+.+.
T Consensus         4 ~G~~GsGKSTla~~l~~~   21 (163)
T TIGR01313         4 MGVAGSGKSTIASALAHR   21 (163)
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999988653

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=95.72  E-value=0.0053  Score=42.62  Aligned_cols=18  Identities=17%  Similarity=0.290  Sum_probs=16.3

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus        34 ~G~nGsGKSTLl~~l~Gl   51 (220)
T cd03263          34 LGHNGAGKTTTLKMLTGE   51 (220)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999999864

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=95.71  E-value=0.0053  Score=42.65  Aligned_cols=18  Identities=28%  Similarity=0.215  Sum_probs=16.3

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus        37 ~G~nGsGKSTLl~~i~G~   54 (221)
T TIGR02211        37 VGSSGSGKSTLLHLLGGL   54 (221)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999999864

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=95.71  E-value=0.0053  Score=41.29  Aligned_cols=18  Identities=28%  Similarity=0.241  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+.
T Consensus        32 ~G~nGsGKSTLl~~l~G~   49 (178)
T cd03229          32 LGPSGSGKSTLLRCIAGL   49 (178)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999999753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=95.69  E-value=0.0053  Score=43.64  Aligned_cols=17  Identities=29%  Similarity=0.448  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      |||.|+|||||+..+++
T Consensus        36 iGPNGaGKSTLlK~iLG   52 (254)
T COG1121          36 IGPNGAGKSTLLKAILG   52 (254)
T ss_pred             ECCCCCCHHHHHHHHhC
Confidence            69999999999999986

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=95.69  E-value=0.0052  Score=41.35  Aligned_cols=17  Identities=24%  Similarity=0.431  Sum_probs=15.3

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+|||||||+..++..
T Consensus         5 ~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         5 LGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999864

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=95.69  E-value=0.0054  Score=39.84  Aligned_cols=61  Identities=13%  Similarity=0.114  Sum_probs=33.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEE-EeCCC-CccCcCchhhhccCCCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKL-VDTAG-QDEYSIFPAQYSMDIHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i-~D~~g-~~~~~~~~~~~~~~~~~~il   72 (157)
                      +|++|+|||||++.+.+..     .++.|.     +.+++.. .+.+ ...++ +.+.-.+....+.+++++|+
T Consensus        32 ~G~nGsGKStLl~~l~G~~-----~~~~G~-----i~~~~~~-~i~~~~~lS~G~~~rv~laral~~~p~illl   94 (144)
T cd03221          32 VGRNGAGKSTLLKLIAGEL-----EPDEGI-----VTWGSTV-KIGYFEQLSGGEKMRLALAKLLLENPNLLLL   94 (144)
T ss_pred             ECCCCCCHHHHHHHHcCCC-----CCCceE-----EEECCeE-EEEEEccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            5999999999999997642     223232     2223321 1111 12443 33333456666777775555

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK14530 adenylate kinase; Provisional

Probab=95.69  E-value=0.0051  Score=42.67  Aligned_cols=17  Identities=24%  Similarity=0.448  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+|||||||+.+++.+
T Consensus         9 ~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          9 LGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999999853

>PRK00300 gmk guanylate kinase; Provisional

Probab=95.69  E-value=0.0051  Score=42.18  Aligned_cols=18  Identities=28%  Similarity=0.410  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+.+.
T Consensus        11 ~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300         11 SGPSGAGKSTLVKALLER   28 (205)
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            599999999999998764

>PRK03839 putative kinase; Provisional

Probab=95.69  E-value=0.0052  Score=41.34  Aligned_cols=17  Identities=29%  Similarity=0.489  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|.|||||||+..++.+
T Consensus         6 ~G~pGsGKsT~~~~La~   22 (180)
T PRK03839          6 TGTPGVGKTTVSKLLAE   22 (180)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998864

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=95.68  E-value=0.0056  Score=42.85  Aligned_cols=18  Identities=22%  Similarity=0.265  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus        32 ~G~nGsGKSTLl~~l~Gl   49 (232)
T cd03218          32 LGPNGAGKTTTFYMIVGL   49 (232)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999999864

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=95.67  E-value=0.0055  Score=42.98  Aligned_cols=18  Identities=28%  Similarity=0.242  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus        37 ~G~nGsGKSTLl~~l~G~   54 (233)
T cd03258          37 IGRSGAGKSTLIRCINGL   54 (233)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999999864

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK04195 replication factor C large subunit; Provisional

Probab=95.66  E-value=0.019  Score=44.87  Aligned_cols=18  Identities=33%  Similarity=0.497  Sum_probs=15.9

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||++++.+.+.
T Consensus        45 ~GppG~GKTtla~ala~e   62 (482)
T PRK04195         45 YGPPGVGKTSLAHALAND   62 (482)
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            399999999999999764

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.65  E-value=0.0055  Score=42.98  Aligned_cols=17  Identities=29%  Similarity=0.382  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      ||++|+|||||++.+-+
T Consensus        36 IG~SGaGKSTLLR~lng   52 (258)
T COG3638          36 IGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             ECCCCCcHHHHHHHHhc
Confidence            69999999999998865

>PRK01889 GTPase RsgA; Reviewed

Probab=95.65  E-value=0.0059  Score=45.76  Aligned_cols=18  Identities=33%  Similarity=0.514  Sum_probs=16.3

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|.+|+|||||++.+++.
T Consensus       201 vG~sgvGKStLin~L~g~  218 (356)
T PRK01889        201 LGSSGVGKSTLVNALLGE  218 (356)
T ss_pred             ECCCCccHHHHHHHHHHh
Confidence            699999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	157
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		4e-58
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		5e-58
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		5e-58
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		3e-57
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		2e-40
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		1e-24
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		4e-24
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		7e-24
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		7e-24
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		2e-23
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		7e-22
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		2e-21
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		3e-21
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		8e-21
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		8e-21
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		4e-20
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-20
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		8e-20
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		9e-20
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		9e-20
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-19
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		2e-19
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		2e-19
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-19
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-19
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		3e-19
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		4e-19
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		4e-19
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		4e-19
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		6e-19
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		8e-19
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		5e-18
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		5e-18
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		8e-18
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-17
4q21_A	189	Molecular Switch For Signal Transduction: Structura		1e-17
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		1e-17
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		1e-17
1wq1_R	166	Ras-Rasgap Complex Length = 166		1e-17
6q21_A	171	Molecular Switch For Signal Transduction: Structura		1e-17
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		1e-17
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-17
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		2e-17
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		2e-17
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-17
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-17
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		2e-17
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		3e-17
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		3e-17
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		3e-17
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		3e-17
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		4e-17
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		4e-17
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		4e-17
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		4e-17
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		4e-17
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		4e-17
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		4e-17
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-17
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		5e-17
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-17
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		5e-17
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		7e-17
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		1e-16
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		1e-16
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		1e-16
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-16
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		1e-16
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		1e-16
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		1e-16
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		5e-16
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		2e-15
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		5e-15
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		8e-15
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		2e-14
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-14
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		2e-14
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		2e-14
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		2e-14
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		4e-14
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		5e-14
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		6e-14
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		7e-14
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		1e-13
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		1e-13
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-13
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		2e-13
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-13
4fmc_B	171	Espg-Rab1 Complex Length = 171		2e-13
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		2e-13
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-13
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		2e-13
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		3e-13
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		3e-13
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		6e-13
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		6e-13
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		8e-13
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		9e-13
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		2e-12
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		2e-12
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-12
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		2e-12
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		3e-12
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		5e-12
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		6e-12
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		6e-12
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		6e-12
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		7e-12
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		9e-12
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		9e-12
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-11
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		1e-11
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		1e-11
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		2e-11
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		2e-11
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		2e-11
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		2e-11
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		2e-11
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		3e-11
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		3e-11
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		4e-11
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		6e-11
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		7e-11
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		1e-10
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		1e-10
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		1e-10
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		2e-10
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		2e-10
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-10
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		3e-10
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		3e-10
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		3e-10
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		5e-10
1s1c_A	183	Crystal Structure Of The Complex Between The Human		5e-10
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		5e-10
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		5e-10
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		5e-10
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		5e-10
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		5e-10
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		5e-10
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		7e-10
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		7e-10
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		8e-10
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		9e-10
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		9e-10
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		1e-09
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		1e-09
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		1e-09
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-09
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		2e-09
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		2e-09
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		2e-09
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-09
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		5e-09
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		5e-09
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		6e-09
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		6e-09
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		6e-09
4fmc_F	117	Espg-Rab1 Complex Length = 117		7e-09
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		7e-09
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		7e-09
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		7e-09
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		7e-09
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		8e-09
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		9e-09
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		1e-08
2efc_B	181	Ara7-GdpATVPS9A Length = 181		1e-08
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		1e-08
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		1e-08
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		1e-08
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		1e-08
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		2e-08
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		2e-08
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		2e-08
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		2e-08
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		2e-08
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-08
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		3e-08
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		5e-08
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		7e-08
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		8e-08
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		9e-08
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		9e-08
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		9e-08
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		9e-08
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		9e-08
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		9e-08
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		9e-08
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		1e-07
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		1e-07
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		1e-07
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		1e-07
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		1e-07
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		1e-07
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		1e-07
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		1e-07
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		1e-07
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		1e-07
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		1e-07
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		1e-07
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		3e-07
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		3e-07
2kb0_A	178	Cdc42(T35a) Length = 178		3e-07
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		4e-07
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		6e-07
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		6e-07
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		7e-07
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		7e-07
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		8e-07
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		8e-07
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		9e-07
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-06
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		1e-06
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		1e-06
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-06
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		1e-06
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-06
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		1e-06
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		1e-06
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-06
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		1e-06
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		1e-06
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		1e-06
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		1e-06
1vg1_A	185	Gdp-bound Rab7 Length = 185		1e-06
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-06
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-06
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		1e-06
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		1e-06
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		2e-06
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		2e-06
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		2e-06
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-06
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		2e-06
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		2e-06
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-06
1mh1_A	186	Small G-Protein Length = 186		3e-06
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		4e-06
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		4e-06
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		4e-06
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		4e-06
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		4e-06
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		4e-06
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		5e-06
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		5e-06
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		6e-06
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		9e-06
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		9e-06
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		9e-06
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		9e-06
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-05
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		1e-05
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		1e-05
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		1e-05
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-05
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		1e-05
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		1e-05
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		3e-05
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		6e-05
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		7e-05
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		7e-05
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		7e-05
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		8e-05

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score =  219 bits (559), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 104/155 (67%), Positives = 127/155 (81%), Gaps = 13/155 (8%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +GYRSVGKSSL+IQFV+GQFVDSYDPTIENTF K   +N Q+Y L+LVDTAGQDEYSIFP
Sbjct: 12  LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 71
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
             YS+DI+GY+LVYS+TS KSFEV+++++ KLLDM GK+Q              PI+LVG
Sbjct: 72  QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-------------IPIMLVG 118
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           NKKDLHMER+ISY+EGK LAESW A F+E+SAK++
Sbjct: 119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 153

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score =  219 bits (558), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 104/155 (67%), Positives = 127/155 (81%), Gaps = 13/155 (8%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +GYRSVGKSSL+IQFV+GQFVDSYDPTIENTF K   +N Q+Y L+LVDTAGQDEYSIFP
Sbjct: 12  LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 71
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
             YS+DI+GY+LVYS+TS KSFEV+++++ KLLDM GK+Q              PI+LVG
Sbjct: 72  QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-------------IPIMLVG 118
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           NKKDLHMER+ISY+EGK LAESW A F+E+SAK++
Sbjct: 119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 153

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score =  219 bits (558), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 104/155 (67%), Positives = 127/155 (81%), Gaps = 13/155 (8%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +GYRSVGKSSL+IQFV+GQFVDSYDPTIENTF K   +N Q+Y L+LVDTAGQDEYSIFP
Sbjct: 7   LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 66
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
             YS+DI+GY+LVYS+TS KSFEV+++++ KLLDM GK+Q              PI+LVG
Sbjct: 67  QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-------------IPIMLVG 113
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           NKKDLHMER+ISY+EGK LAESW A F+E+SAK++
Sbjct: 114 NKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 148

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score =  217 bits (552), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 103/155 (66%), Positives = 126/155 (81%), Gaps = 13/155 (8%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +GYRSVGKSSL+IQFV+GQFVDS DPTIENTF K   +N Q+Y L+LVDTAGQDEYSIFP
Sbjct: 10  LGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 69
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
             YS+DI+GY+LVYS+TS KSFEV+++++ KLLDM GK+Q              PI+LVG
Sbjct: 70  QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-------------IPIMLVG 116
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           NKKDLHMER+ISY+EGK LAESW A F+E+SAK++
Sbjct: 117 NKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 151

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score =  161 bits (407), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 106/156 (67%), Gaps = 13/156 (8%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +GYR VGK+SL+ QFV+G+F + YDPT+ENT+ K   +   ++ L LVDTAGQDEYSI P
Sbjct: 30  LGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILP 89
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
             + + +HGYVLVYS+TS  SF+V++ LY KL +  GK +              P+VLVG
Sbjct: 90  YSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR-------------VPVVLVG 136
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK DL  ER +   EGK+LAESW A F+E+SA+++ 
Sbjct: 137 NKADLSPEREVQAVEGKKLAESWGATFMESSARENQ 172

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 91/154 (59%), Gaps = 14/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QFV G FVD YDPTIE+++ K   ++ Q   L+++DTAG ++++   
Sbjct: 9   LGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMR 68
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
             Y  +  G+ LVYSIT+  +F  +Q L +++L +                   P++LVG
Sbjct: 69  DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV-------------KDTEDVPMILVG 115
Query: 121 NKKDLHMERMISYDEGKRLAESW-KAGFVEASAK 153
           NK DL  ER++  ++G+ LA  W    F+E+SAK
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWCNCAFLESSAK 149

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 91/154 (59%), Gaps = 14/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QFV G FV+ YDPTIE+++ K   ++ Q   L+++DTAG ++++   
Sbjct: 9   LGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMR 68
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
             Y  +  G+ LVYSIT+  +F  +Q L +++L +                   P++LVG
Sbjct: 69  DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK-------------DTEDVPMILVG 115
Query: 121 NKKDLHMERMISYDEGKRLAESW-KAGFVEASAK 153
           NK DL  ER++  ++G+ LA  W    F+E+SAK
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWCNCAFLESSAK 149

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score =  106 bits (264), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 91/154 (59%), Gaps = 14/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QFV G FV+ YDPTIE+++ K   ++ Q   L+++DTAG ++++   
Sbjct: 9   LGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMR 68
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
             Y  +  G+ LVYSIT+  +F  +Q L +++L +                   P++LVG
Sbjct: 69  DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV-------------KDTDDVPMILVG 115
Query: 121 NKKDLHMERMISYDEGKRLAESW-KAGFVEASAK 153
           NK DL  ER++  ++G+ LA  W    F+E+SAK
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWNNCAFLESSAK 149

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score =  106 bits (264), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 91/154 (59%), Gaps = 14/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QFV G FV+ YDPTIE+++ K   ++ Q   L+++DTAG ++++   
Sbjct: 11  LGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMR 70
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
             Y  +  G+ LVYSIT+  +F  +Q L +++L +                   P++LVG
Sbjct: 71  DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK-------------DTDDVPMILVG 117
Query: 121 NKKDLHMERMISYDEGKRLAESW-KAGFVEASAK 153
           NK DL  ER++  ++G+ LA  W    F+E+SAK
Sbjct: 118 NKCDLEDERVVGKEQGQNLARQWNNCAFLESSAK 151

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 87/155 (56%), Gaps = 18/155 (11%)
Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA 61
           G   VGKSSL ++FV G F +SY PT+E+T+ +    +     L++ DT G  +   FPA
Sbjct: 10  GAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ---FPA 66
Query: 62  QYSMDI---HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
              + I   H ++LVYSITS +S E ++ +Y+++ ++ G +++             PI+L
Sbjct: 67  MQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES------------IPIML 114
Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           VGNK D    R +   E + LA +WK  F+E SAK
Sbjct: 115 VGNKCDESPSREVQSSEAEALARTWKCAFMETSAK 149

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 99.4 bits (246), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 85/146 (58%), Gaps = 13/146 (8%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQF+   FV  YDPTIE+++ K   ++++   L ++DTAGQ+E+     QY    
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++LV+S+T   SFE +     ++L +  +                P++L+GNK DL  
Sbjct: 78  EGFLLVFSVTDRGSFEEIYKFQRQILRVKDR-------------DEFPMILIGNKADLDH 124
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
           +R ++ +EG++LA   K  ++EASAK
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAK 150

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/146 (37%), Positives = 84/146 (57%), Gaps = 13/146 (8%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQF    FVD YDPTIE++++K T ++NQ   L ++DTAGQ+E+S    QY    
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G+++VYS+T   SFE V   +  +L +  +                P++LV NK DL  
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDR-------------ESFPMILVANKVDLMH 137
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R ++ D+GK +A  +   ++E SAK
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAK 163

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/146 (37%), Positives = 83/146 (56%), Gaps = 13/146 (8%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQF    FVD YDPTIE+++ K T ++NQ   L ++DTAGQ+E+S    QY    
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G+++VYS+T   SFE V   +  +L +  +                P++LV NK DL  
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDR-------------ESFPMILVANKVDLMH 137
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R ++ D+GK +A  +   ++E SAK
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAK 163

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 95.9 bits (237), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 13/146 (8%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQF    FV  YDPTIE++++K T ++NQ   L ++DTAGQ+E+S    QY    
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G+++VYS+T   SFE V   +  +L +  +                P++LV NK DL  
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDR-------------ESFPMILVANKVDLMH 137
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R ++ D+GK +A  +   ++E SAK
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAK 163

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 95.9 bits (237), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 13/146 (8%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQF    FV  YDPTIE++++K T ++NQ   L ++DTAGQ+E+S    QY    
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 85
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G+++VYS+T   SFE V   +  +L +  +                P++LV NK DL  
Sbjct: 86  DGFLIVYSVTDKASFEHVDRFHQLILRVKDR-------------ESFPMILVANKVDLMH 132
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R ++ D+GK +A  +   ++E SAK
Sbjct: 133 LRKVTRDQGKEMATKYNIPYIETSAK 158

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 93.6 bits (231), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 13/146 (8%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQF+   FV  YDPTIE+++ K   ++     L ++DTAGQ+E+     QY    
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
           HG++LV++I   +SF  V  L+ ++L +  +                P+VLVGNK DL  
Sbjct: 82  HGFLLVFAINDRQSFNEVGKLFTQILRVKDR-------------DDFPVVLVGNKADLES 128
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
           +R +   E      S    + EASAK
Sbjct: 129 QRQVPRSEASAFGASHHVAYFEASAK 154

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 93.6 bits (231), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 81/153 (52%), Gaps = 14/153 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G R VGKS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS   
Sbjct: 9   VGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
            QY     G++ V++I + KSFE +              Q              P+VLVG
Sbjct: 69  DQYMRTGEGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVG 115
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           NK DL   R +   + + LA S+   ++E SAK
Sbjct: 116 NKCDL-AARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 92.4 bits (228), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 13/153 (8%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QF+  +FV+ Y+PT  +++ K   ++ ++  + ++DTAGQ++Y+   
Sbjct: 20  VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIR 79
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
             Y     G++ V+SIT  +SF       +++L +                   P +LVG
Sbjct: 80  DNYFRSGEGFLCVFSITEMESFAATADFREQILRVK-------------EDENVPFLLVG 126
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           NK DL  +R +S +E K  AE W   +VE SAK
Sbjct: 127 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAK 159

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 92.4 bits (228), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 13/153 (8%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QF+  +FV+ Y+PT  +++ K   ++ ++  + ++DTAGQ++Y+   
Sbjct: 24  VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIR 83
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
             Y     G++ V+SIT  +SF       +++L +                   P +LVG
Sbjct: 84  DNYFRSGEGFLCVFSITEMESFAATADFREQILRVK-------------EDENVPFLLVG 130
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           NK DL  +R +S +E K  AE W   +VE SAK
Sbjct: 131 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAK 163

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 92.4 bits (228), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 13/153 (8%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QF+  +FV+ Y+PT  +++ K   ++ ++  + ++DTAGQ++Y+   
Sbjct: 12  VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIR 71
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
             Y     G++ V+SIT  +SF       +++L +                   P +LVG
Sbjct: 72  DNYFRSGEGFLCVFSITEMESFAATADFREQILRVK-------------EDENVPFLLVG 118
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           NK DL  +R +S +E K  AE W   +VE SAK
Sbjct: 119 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAK 151

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 14/153 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS   
Sbjct: 10  VGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 69
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
            QY     G++ V++I + KSFE +    +++                      P+VLVG
Sbjct: 70  DQYMRTGEGFLCVFAINNTKSFEDIHHYREQI-------------KRVKDSEDVPMVLVG 116
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           NK DL   R +   + + LA S+   F+E SAK
Sbjct: 117 NKSDLP-SRTVDTKQAQDLARSYGIPFIETSAK 148

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 87/146 (59%), Gaps = 13/146 (8%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L++QFV G F++ YDPTIE+ + K   +++    L+++DTAG ++++     Y  + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++LVYS+ + +SF+ ++ + D+++ +                   P++LVGNK DL  
Sbjct: 76  QGFILVYSLVNQQSFQDIKPMRDQIIRV-------------KRYEKVPVILVGNKVDLES 122
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
           ER +S  EG+ LAE W   F+E SAK
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAK 148

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 84/153 (54%), Gaps = 12/153 (7%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QF+  +FV+ Y+PT  +++ K   ++ ++  + ++DTAG ++Y+   
Sbjct: 13  VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIR 72
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
             Y     G++LV+SIT H+SF       +++L +  +                P+++VG
Sbjct: 73  DNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAE------------EDKIPLLVVG 120
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           NK DL   R +  +E +  AE W   +VE SAK
Sbjct: 121 NKSDLEERRQVPVEEARSKAEEWGVQYVETSAK 153

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 84/153 (54%), Gaps = 12/153 (7%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QF+  +FV+ Y+PT  +++ K   ++ ++  + ++DTAG ++Y+   
Sbjct: 9   VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIR 68
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
             Y     G++LV+SIT H+SF       +++L +  +                P+++VG
Sbjct: 69  DNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAE------------EDKIPLLVVG 116
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           NK DL   R +  +E +  AE W   +VE SAK
Sbjct: 117 NKSDLEERRQVPVEEARSKAEEWGVQYVETSAK 149

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 14/153 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS   
Sbjct: 10  VGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 69
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
            QY     G++ V++I + KSFE +    +++                      P+VLVG
Sbjct: 70  DQYMRTGEGFLCVFAINNTKSFEDIHHYREQI-------------KRVKDSEDVPMVLVG 116
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           NK DL   R +   + + LA S+   F+E SAK
Sbjct: 117 NKCDLP-SRTVDTKQAQDLARSYGIPFIETSAK 148

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 83/153 (54%), Gaps = 13/153 (8%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QF+  +FV+ Y+PT  +++ K   ++ ++  + ++DTAGQ++Y+   
Sbjct: 10  VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIR 69
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
             Y     G++ V+SIT  +SF       +++L +                   P +LVG
Sbjct: 70  DNYFRSGEGFLCVFSITEMESFAATADFREQILRVK-------------EDENVPFLLVG 116
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           NK DL  +R +S +E K  A+ W   +VE SAK
Sbjct: 117 NKSDLEDKRQVSVEEAKNRADQWNVNYVETSAK 149

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 19/151 (12%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KSSL ++FV G F D+Y PTIE+T+ +    +     L++ DT G  +   FPA   + I
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQ---FPAMQRLSI 77
Query: 68  ---HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKD 124
              H ++LV+S+TS +S E +  +Y  ++ + G +++             P++LVGNK D
Sbjct: 78  SKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED------------IPVMLVGNKCD 125
Query: 125 LHMERMISYDEGKRLAESWKAGFVEASAKQD 155
              +R +   E + +A+ WK  F+E SAK +
Sbjct: 126 -ETQREVDTREAQAVAQEWKCAFMETSAKMN 155

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 14/153 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS   
Sbjct: 9   VGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
            QY     G++ V++I + KSFE +              Q              P+VLVG
Sbjct: 69  DQYMRTGEGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVG 115
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           NK DL   R +   + + LA S+   ++E SAK
Sbjct: 116 NKCDL-AARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 90.1 bits (222), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 14/153 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS   
Sbjct: 9   VGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
            QY     G++ V++I + KSFE +              Q              P+VLVG
Sbjct: 69  DQYMRTGEGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVG 115
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           NK DL   R +   + + LA S+   ++E SAK
Sbjct: 116 NKCDL-AARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 89.7 bits (221), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 14/153 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS   
Sbjct: 9   VGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
            QY     G++ V++I + KSFE +              Q              P+VLVG
Sbjct: 69  DQYMRTGEGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVG 115
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           NK DL   R +   + + LA S+   ++E SAK
Sbjct: 116 NKCDL-AGRTVESRQAQDLARSYGIPYIETSAK 147

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 89.4 bits (220), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 13/153 (8%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QF+  +FV+ Y+PT  +++ K   ++ ++  + ++DTAG ++Y+   
Sbjct: 12  VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIR 71
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
             Y     G++ V+SIT  +SF       +++L +                   P +LVG
Sbjct: 72  DNYFRSGEGFLCVFSITEMESFAATADFREQILRVK-------------EDENVPFLLVG 118
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           NK DL  +R +S +E K  AE W   +VE SAK
Sbjct: 119 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAK 151

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 86.7 bits (213), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS    QY    
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +    +++                      P+VLVGNK DL  
Sbjct: 77  EGFLCVFAINNTKSFEDIHHYREQI-------------KRVKDSEDVPMVLVGNKSDLP- 122
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   F+E SAK
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAK 148

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 86.7 bits (213), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS    QY    
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +    +++                      P+VLVGNK DL  
Sbjct: 77  EGFLCVFAINNTKSFEDIHHYREQI-------------KRVKDSEDVPMVLVGNKSDLP- 122
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   F+E SAK
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAK 148

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 85.9 bits (211), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS    QY    
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSF  + +  +++                      P+VLVGNK DL  
Sbjct: 94  EGFLCVFAINNSKSFADINLYREQI-------------KRVKDSDDVPMVLVGNKCDLPT 140
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   +   LA+S+   F+E SAK
Sbjct: 141 -RTVDTKQAHELAKSYGIPFIETSAK 165

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS    QY    
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 81  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 126
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAK 152

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS    QY    
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 81  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 126
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAK 152

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS    QY    
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 83  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 128
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 129 ARTVESRQAQDLARSYGIPYIETSAK 154

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE ++ K   ++ +   L ++DTAGQ+EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGN+ DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNRCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 81/146 (55%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAG +EYS    QY    
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +    +++     ++++             P+VLVGNK DL  
Sbjct: 94  EGFLCVFAINNTKSFEDIHHYREQI----KRVKD---------SEDVPMVLVGNKCDL-P 139
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   F+E SAK
Sbjct: 140 SRTVDTKQAQDLARSYGIPFIETSAK 165

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 14/151 (9%)
Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA 61
           G   VGKS+L ++F+  +F+  YDPT+E+T+     ++++   ++++DTAGQ++ +I   
Sbjct: 35  GRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQRE 93
Query: 62  QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGN 121
            +     G+VLVY IT   SFE V  L + +LD   K +N              ++LVGN
Sbjct: 94  GHMRWGEGFVLVYDITDRGSFEEVLPLKN-ILDEIKKPKN------------VTLILVGN 140
Query: 122 KKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           K DL   R +S +EG++LA      F E SA
Sbjct: 141 KADLDHSRQVSTEEGEKLATELACAFYECSA 171

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           K++L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS    QY    
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS    +Y    
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD +DPTIE+++ K   ++ +   L ++DTAGQ+EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDP+IE+++ K   ++ +   L ++DTAGQ+EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 83.6 bits (205), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDP+IE+++ K   ++ +   L ++DTAGQ+EYS    QY    
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 82  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 127
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 128 ARTVESRQAQDLARSYGIPYIETSAK 153

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DT GQ+EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAG++EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FV+ YDPTIE+++ K   ++ +   L ++DTAGQ+EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DT GQ+EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 83.2 bits (204), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTA Q+EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKXDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAG +EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTA Q+EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKXDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 82.8 bits (203), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD  DPTIE+++ K   ++ +   L ++DTAGQ+EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKSDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAG +EYS    QY    
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 81  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 126
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAK 152

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAG +EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+E S    QY    
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAG +EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAG +EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAG +EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8   KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
           KS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAG +EYS    QY    
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 68  HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
            G++ V++I + KSFE +              Q              P+VLVGNK DL  
Sbjct: 76  EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
            R +   + + LA S+   ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 15/155 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L ++F D  + DSY  TI   F ++T  + N+   L++ DTAGQ+ +   
Sbjct: 15  IGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTI 74
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y    HG ++VY +T   SF+ V+    ++     +  N               +LV
Sbjct: 75  TSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNK--------------LLV 120
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           GNK DL  +R+++ DEG+ LA+S    F+E SAK 
Sbjct: 121 GNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKN 155

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 15/156 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G  SVGK+S   ++ D  F  ++  T+   F VKT   N++   L++ DTAGQ+ Y   
Sbjct: 11  IGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTI 70
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y     G++L+Y IT+ +SF  VQ       D + +I+               ++LV
Sbjct: 71  TTAYYRGAMGFILMYDITNEESFNAVQ-------DWSTQIKT-------YSWDNAQVLLV 116
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           GNK D+  ER++S + G++LA+     F EASAK +
Sbjct: 117 GNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDN 152

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 80/156 (51%), Gaps = 15/156 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G  SVGK+S   ++ D  F  ++  T+   F VKT   +++   L++ DTAGQ+ Y   
Sbjct: 28  IGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI 87
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y     G++L+Y I + +SF  VQ       D   +I+               ++LV
Sbjct: 88  TTAYYRGAMGFLLMYDIANQESFAAVQ-------DWATQIKTYSWDNAQ-------VILV 133
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           GNK DL  ER++  ++G+RLA+     F EASAK++
Sbjct: 134 GNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKEN 169

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 75.9 bits (185), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 15/156 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G  SVGK+S   ++ D  F  ++  T+   F VKT   + +   L++ DTAGQ+ Y   
Sbjct: 29  IGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTI 88
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y     G++L+Y IT+ +SF  VQ       D   +I+               ++LV
Sbjct: 89  TTAYYRGAMGFILMYDITNEESFNAVQ-------DWATQIKT-------YSWDNAQVILV 134
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           GNK D+  ER++  ++G+ LAE     F EASAK++
Sbjct: 135 GNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKEN 170

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 15/156 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGK+SL +++ + +F D +  T++ +F+ K   +  +  +L + DTAGQ+ +   
Sbjct: 12  LGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHAL 71
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y  D +G +LVY IT   SF+ V+    +L  M G                  + +V
Sbjct: 72  GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--------------EICLCIV 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           GNK DL  ER +S  E +  AES  A     SAKQ+
Sbjct: 118 GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQN 153

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 16/157 (10%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L ++FV+ +F  S+  TI   F +KT  +N +   L+L DTAGQ+ +   
Sbjct: 13  IGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI 72
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y     G +LVY +T  ++F                I+               ++LV
Sbjct: 73  TTAYYRGAMGIILVYDVTDERTFT--------------NIKQWFKTVNEHANDEAQLLLV 118
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK D+   R+++ D+G+ LA+     F+E+SAK DD
Sbjct: 119 GNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDD 154

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 16/157 (10%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L ++FV+ +F  S+  TI   F +KT  +N +   L+L DTAGQ+ +   
Sbjct: 26  IGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI 85
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y     G +LVY +T  ++F  ++  +  +                       ++LV
Sbjct: 86  TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV--------------NEHANDEAQLLLV 131
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK D+   R+++ D+G+ LA+     F+E+SAK DD
Sbjct: 132 GNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDD 167

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 15/156 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGK+SL +++ + +F D +  T++ +F+ K   +  +  +L + DTAGQ+ +   
Sbjct: 26  LGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHAL 85
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y  D +G +LVY IT   SF+ V+    +L  M G                  + +V
Sbjct: 86  GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--------------EICLCIV 131
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           GNK DL  ER +S  E +  AES  A     SAKQ+
Sbjct: 132 GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQN 167

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 16/157 (10%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L ++FV+ +F  S+  TI   F +KT  +N +   L++ DTAGQ+ +   
Sbjct: 9   IGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI 68
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y     G +LVY IT  ++F                I+               ++LV
Sbjct: 69  TTAYYRGAMGIILVYDITDERTFT--------------NIKQWFKTVNEHANDEAQLLLV 114
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK D+   R+++ D+G+ LA+     F+E+SAK DD
Sbjct: 115 GNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDD 150

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 16/157 (10%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L ++FV+ +F  S+  TI   F +KT  +N +   L+L DTAGQ+ +   
Sbjct: 9   IGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI 68
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y     G +LVY +T  ++F                I+               ++LV
Sbjct: 69  TTAYYRGAXGIILVYDVTDERTFT--------------NIKQWFKTVNEHANDEAQLLLV 114
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK D    R+++ D+G+ LA+     F+E+SAK DD
Sbjct: 115 GNKSDXET-RVVTADQGEALAKELGIPFIESSAKNDD 150

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 15/156 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGK+SL +++ + +F D +  T+  +F+ K   +  +  +L + DTAGQ+ +   
Sbjct: 12  LGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL 71
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y  D +G +LVY IT   SF+ V+    +L  M G                  + +V
Sbjct: 72  GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--------------EICLCIV 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           GNK DL  ER +S  E +  AES  A     SAKQ+
Sbjct: 118 GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQN 153

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 16/157 (10%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L ++FV+ +F  S+  TI   F +KT  +N +   L++ DTAGQ+ +   
Sbjct: 9   IGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI 68
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y     G +LVY IT  ++F                I+               ++LV
Sbjct: 69  TTAYYRGAXGIILVYDITDERTFT--------------NIKQWFKTVNEHANDEAQLLLV 114
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK D    R+++ D+G+ LA+     F+E+SAK DD
Sbjct: 115 GNKSDXET-RVVTADQGEALAKELGIPFIESSAKNDD 150

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G  SVGK+S   ++ D  F  ++  T+   F VKT   N++   L++ DTAG + Y   
Sbjct: 14  IGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTI 73
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y     G++L Y IT+ +SF  VQ       D + +I+               ++LV
Sbjct: 74  TTAYYRGAXGFILXYDITNEESFNAVQ-------DWSTQIKTYSWDNAQ-------VLLV 119
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK D   ER++S + G++LA+     F EASAK
Sbjct: 120 GNKCDXEDERVVSSERGRQLADHLGFEFFEASAK 153

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 15/153 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L ++F D  + + Y  TI   F +KT  ++ +   L++ DTAGQ+ +   
Sbjct: 14  IGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI 73
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y    HG ++VY +T  +SF  V++   ++                        +LV
Sbjct: 74  TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--------------DRYATSTVLKLLV 119
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           GNK DL  +R++ YD  K  A++ K  F+E SA
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSA 152

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 15/153 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L ++F D  + + Y  TI   F +KT  ++ +   L++ DTAGQ+ +   
Sbjct: 14  IGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI 73
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y    HG ++VY +T  +SF  V++   ++                        +LV
Sbjct: 74  TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--------------DRYATSTVLKLLV 119
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           GNK DL  +R++ YD  K  A++ K  F+E SA
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSA 152

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 15/153 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L ++F D  + + Y  TI   F +KT  ++ +   L++ DTAGQ+ +   
Sbjct: 27  IGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI 86
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y    HG ++VY +T  +SF  V++   ++                        +LV
Sbjct: 87  TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--------------DRYATSTVLKLLV 132
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           GNK DL  +R++ YD  K  A++ K  F+E SA
Sbjct: 133 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSA 165

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 16/156 (10%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G  +VGKSS+  ++  G F   Y  TI   F+ +  ++N++D  L L DTAGQ+E+   
Sbjct: 11  VGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI 70
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y       VLV+S T  +SFE +    +K++   G I               P  LV
Sbjct: 71  TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDI---------------PTALV 115
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
            NK DL  +  I  +E + LA+  K  F   S K+D
Sbjct: 116 QNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKED 151

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L ++F D  + +SY  TI   F ++T  ++ +   L++ DTAGQ+ +   
Sbjct: 39  IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 98
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y    HG ++VY +T  +SF  V+    ++     +  N               +LV
Sbjct: 99  TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK--------------LLV 144
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           GNK DL  ++++ Y   K  A+S    F+E SAK 
Sbjct: 145 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKN 179

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L ++F D  + +SY  TI   F ++T  ++ +   L++ DTAGQ+ +   
Sbjct: 12  IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 71
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y    HG ++VY +T  +SF  V+    ++     +  N               +LV
Sbjct: 72  TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK--------------LLV 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  ++++ Y   K  A+S    F+E SAK
Sbjct: 118 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAK 151

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L ++F D  + +SY  TI   F ++T  ++ +   L++ DTAGQ+ +   
Sbjct: 31  IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 90
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y    HG ++VY +T  +SF  V+    ++     +  N               +LV
Sbjct: 91  TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK--------------LLV 136
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           GNK DL  ++++ Y   K  A+S    F+E SAK 
Sbjct: 137 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKN 171

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L ++F D  + +SY  TI   F ++T  ++ +   L++ DTAGQ+ +   
Sbjct: 5   IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 64
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y    HG ++VY +T  +SF  V+    ++     +  N               +LV
Sbjct: 65  TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK--------------LLV 110
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  ++++ Y   K  A+S    F+E SAK
Sbjct: 111 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAK 144

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L ++F D  + +SY  TI   F ++T  ++ +   L++ DTAGQ+ +   
Sbjct: 12  IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 71
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y    HG ++VY +T  +SF  V+    ++     +  N               +LV
Sbjct: 72  TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK--------------LLV 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  ++++ Y   K  A+S    F+E SAK
Sbjct: 118 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAK 151

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G +SVGK+SL  +F+   F ++Y  TI   F+ KT  + ++   L+L DTAGQ+ +   
Sbjct: 12  LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSL 71
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y  D    V+VY IT+  SF+      D +    G                  I+LV
Sbjct: 72  IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS--------------DVIIMLV 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R +S +EG+R A+     F+E SAK
Sbjct: 118 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 151

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L ++F D  + +SY  TI   F ++T  ++ +   L++ DTAGQ+ +   
Sbjct: 22  IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 81
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y    HG ++VY +T  +SF  V+    ++     +  N               +LV
Sbjct: 82  TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK--------------LLV 127
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           GNK DL  ++++ Y   K  A+S    F+E SAK 
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKN 162

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGK+ L ++F D  + +SY  TI   F ++T  ++ +   L++ DTAGQ+ +   
Sbjct: 22  IGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 81
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y    HG ++VY +T  +SF  V+    ++     +  N               +LV
Sbjct: 82  TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK--------------LLV 127
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           GNK DL  ++++ Y   K  A+S    F+E SAK 
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKN 162

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G +SVGK+SL  +F+   F ++Y  TI   F+ KT  + ++   L+L DTAGQ+ +   
Sbjct: 7   LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 66
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y  D    V+VY IT+  SF+      D +    G                  I+LV
Sbjct: 67  IPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS--------------DVIIMLV 112
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R +S +EG+R A+     F+E SAK
Sbjct: 113 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 146

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 69.3 bits (168), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G +SVGK+SL  +F+   F ++Y  TI   F+ KT  + ++   L+L DTAGQ+ +   
Sbjct: 20  LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 79
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y  D    V+VY IT+  SF       D +    G                  I+LV
Sbjct: 80  IPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS--------------DVIIMLV 125
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R +S +EG+R A+     F+E SAK
Sbjct: 126 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 159

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 69.3 bits (168), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G ++VGK+S+  +F    F ++Y  TI   F+ KT  ++     L+L DTAGQ+ +   
Sbjct: 7   LGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSL 66
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y  D    ++VY IT+ +SFE        +L+  GK                 I LV
Sbjct: 67  IPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGK--------------DVIIALV 112
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL   R ++Y+EG + A+ +   F E SAK
Sbjct: 113 GNKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAK 146

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 16/155 (10%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G R VGK+SL  +F D  F ++   T+   F +KT  +  +   L++ DTAGQ+ ++  
Sbjct: 32  IGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI 91
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y     G +LVY IT  ++F+ +     K + M  K  +              ++LV
Sbjct: 92  TSAYYRSAKGIILVYDITKKETFDDLP----KWMKMIDKYASEDAE----------LLLV 137
Query: 120 GNKKDLHMERMISYDEGKRLAESWKA-GFVEASAK 153
           GNK D   +R I+  +G++ A+      F EASAK
Sbjct: 138 GNKLDCETDREITRQQGEKFAQQITGMRFCEASAK 172

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G +SVGK+SL  +F+   F ++Y  TI   F+ KT  + ++   L+L DTAG + +   
Sbjct: 19  LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSL 78
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y  D    V+VY IT+  SF+      D +    G                  I+LV
Sbjct: 79  IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS--------------DVIIMLV 124
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R +S +EG+R A+     F+E SAK
Sbjct: 125 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 158

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G  +VGKSSL ++FV GQF +  + TI   F+ ++  +++     ++ DTAGQ+ Y   
Sbjct: 14  LGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSL 73
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y       ++VY IT+ ++F   +    +L                       I L 
Sbjct: 74  APMYYRGAQAAIVVYDITNQETFARAKTWVKEL--------------QRQASPSIVIALA 119
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +RM+ Y+E +  A+     F+E SAK
Sbjct: 120 GNKADLANKRMVEYEEAQAYADDNSLLFMETSAK 153

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G +SVGK+SL  +F+   F ++Y  TI   F+ KT  + ++   L+L DTAGQ+ +   
Sbjct: 8   LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 67
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y  D    V+VY IT+  SF+      D +    G                  I+LV
Sbjct: 68  IPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGS--------------DVIIMLV 113
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R I+ +EG++ A+     F+E SAK
Sbjct: 114 GNKTDLADKRQITIEEGEQRAKELSVMFIETSAK 147

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L ++F D  + +SY  TI   F ++T  ++ +   L++ DTAGQ+ +   
Sbjct: 14  IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 73
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y    HG ++VY +T  +SF  V+    ++     +  N               +LV
Sbjct: 74  TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK--------------LLV 119
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           G K DL  ++++ Y   K  A+S    F+E SAK
Sbjct: 120 GIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAK 153

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G +SVGK+SL  +F+   F ++Y  TI   F+ KT  + ++   L+L DTAG + +   
Sbjct: 12  LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSL 71
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y  D    V+VY IT+  SF+      D +    G                  I+LV
Sbjct: 72  IPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG--------------SDVIIMLV 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R +S +EG+R A+     F+E SAK
Sbjct: 118 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 151

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G  +VGKSSL ++FV GQF +  + TI+  F+ +T  +++     ++ DTAGQ+ Y   
Sbjct: 11  LGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 70
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y       ++VY IT+  +F               + +N              I L 
Sbjct: 71  APMYYRGAQAAIVVYDITNTDTF--------------ARAKNWVKELQRQASPNIVIALA 116
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R + + E +  A+     F+E SAK
Sbjct: 117 GNKADLASKRAVEFQEAQAYADDNSLLFMETSAK 150

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L ++F D  + +SY  TI   F ++T  ++ +   L++ DTAGQ+ +   
Sbjct: 15  IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 74
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y    HG ++VY +T  +S+  V+    ++     +  N               +LV
Sbjct: 75  TSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNK--------------LLV 120
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  ++++     K  A+S    F+E SAK
Sbjct: 121 GNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAK 154

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L ++F D  + +SY  TI   F ++T  ++ +   L++ DTAGQ+ +   
Sbjct: 15  IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 74
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y    HG ++VY +T  +S+  V+    ++     +  N               +LV
Sbjct: 75  TSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNK--------------LLV 120
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  ++++     K  A+S    F+E SAK
Sbjct: 121 GNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAK 154

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G +SVGK+SL  +F+   F ++Y  TI   F+ KT  + ++   L+L DTAG + +   
Sbjct: 22  LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSL 81
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y  D    V+VY IT+  SF+      D +    G                  I+LV
Sbjct: 82  IPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS--------------DVIIMLV 127
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R +S +EG+R A+     F+E SAK
Sbjct: 128 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 161

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G  +VGKSSL ++FV GQF +  + TI   F+ +T  +++     ++ DTAGQ+ Y   
Sbjct: 13  LGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 72
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y       ++VY IT+ +SF               + +N              I L 
Sbjct: 73  APMYYRGAQAAIVVYDITNEESF--------------ARAKNWVKELQRQASPNIVIALS 118
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R + + E +  A+     F+E SAK
Sbjct: 119 GNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 152

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G  +VGKSSL ++FV GQF +  + TI   F+ +T  +++     ++ DTAGQ+ Y   
Sbjct: 12  LGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y       ++VY IT+ +SF               + +N              I L 
Sbjct: 72  APMYYRGAQAAIVVYDITNEESF--------------ARAKNWVKELQRQASPNIVIALS 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R + + E +  A+     F+E SAK
Sbjct: 118 GNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 151

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G  +VGKSS+ ++FV   F ++ +PTI   F+ +   +N      ++ DTAGQ+ ++  
Sbjct: 9   LGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASL 68
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y  +    ++VY +T  +SF   +    +L +   K                 I LV
Sbjct: 69  APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--------------DIIIALV 114
Query: 120 GNKKDLHM---ERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK D      ER ++ +EG++LAE     F E SAK  +
Sbjct: 115 GNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGE 154

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G  +VGKSSL ++FV GQF +  + TI   F+ +T  +++     ++ DTAGQ+ Y   
Sbjct: 13  LGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 72
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y       ++VY IT+ +SF               + +N              I L 
Sbjct: 73  APXYYRGAQAAIVVYDITNEESF--------------ARAKNWVKELQRQASPNIVIALS 118
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R + + E +  A+     F E SAK
Sbjct: 119 GNKADLANKRAVDFQEAQSYADDNSLLFXETSAK 152

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKSSL ++FV GQF +  + TI   F+ +T  +++     ++ DTAGQ+ Y   
Sbjct: 12  LGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y       ++VY IT+ +SF               + +N              I L 
Sbjct: 72  APMYYRGAQAAIVVYDITNEESF--------------ARAKNWVKELQRQASPNIVIALS 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R + + E +  A+     F+E SAK
Sbjct: 118 GNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 151

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKSSL ++FV GQF +  + TI   F+ +T  +++     ++ DTAGQ+ Y   
Sbjct: 12  LGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y       ++VY IT+ +SF               + +N              I L 
Sbjct: 72  APMYYRGAQAAIVVYDITNEESF--------------ARAKNWVKELQRQASPNIVIALS 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R + + E +  A+     F+E SAK
Sbjct: 118 GNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 151

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKSSL ++FV GQF +  + TI   F+ +T  +++     ++ DTAGQ+ Y   
Sbjct: 12  LGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y       ++VY IT+ +SF               + +N              I L 
Sbjct: 72  APMYYRGAQAAIVVYDITNEESF--------------ARAKNWVKELQRQASPNIVIALS 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R + + E +  A+     F+E SAK
Sbjct: 118 GNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 151

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKSSL ++FV GQF +  + TI   F+ +T  +++     ++ DTAGQ+ Y   
Sbjct: 12  LGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y       ++VY IT+ +SF               + +N              I L 
Sbjct: 72  APMYYRGAQAAIVVYDITNEESF--------------ARAKNWVKELQRQASPNIVIALS 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R + + E +  A+     F+E SAK
Sbjct: 118 GNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 151

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 12/155 (7%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G R  GKS+L+++F+  +F+  YDP +E+T+     +++Q   L+++DTA  D      
Sbjct: 27  LGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC- 85
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
            +Y    H +++VYS+ S +        Y +LL +  K                P +L+G
Sbjct: 86  ERYLNWAHAFLVVYSVDS-RQSFDSSSSYLELLALHAK----------ETQRSIPALLLG 134
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           NK D+   R ++  EG  LA  +   F E SA  D
Sbjct: 135 NKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLD 169

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G  +VGKSSL ++FV GQF +  + TI   F+ +T  +++     ++ DTAGQ+ Y   
Sbjct: 9   LGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 68
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y       ++VY IT+  +F               + +N              I L 
Sbjct: 69  APMYYRGAQAAIVVYDITNTDTF--------------ARAKNWVKELQRQASPNIVIALA 114
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R + + E +  A+     F+E SAK
Sbjct: 115 GNKADLASKRAVEFQEAQAYADDNSLLFMETSAK 148

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKSSL ++FV GQF +  + TI   F+ +T  +++     ++ DTAGQ+ Y   
Sbjct: 12  LGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y       ++VY IT+ +SF               + +N              I L 
Sbjct: 72  APMYYRGAQAAIVVYDITNEESF--------------ARAKNWVKELQRQASPNIVIALS 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R + + E +  A+     F+E SAK
Sbjct: 118 GNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 151

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 15/157 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L  QF + +F+     TI   F  +   ++ Q   L++ DTAGQ+ +   
Sbjct: 21  IGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV 80
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y     G ++VY IT   ++  +        ++T                   I+L+
Sbjct: 81  TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--------------NTVIILI 126
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK DL  +R ++Y+E K+ AE     F+EASAK  +
Sbjct: 127 GNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGE 163

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 16/156 (10%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKSSL ++F D  F  SY  TI   F ++T  +N +   L++ DTAGQ+ +   
Sbjct: 15  IGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTI 74
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y    HG ++VY +TS +SF  V+    ++      +                 +LV
Sbjct: 75  TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCR---------------ILV 119
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           GNK D    +++  ++  + A        E SAK++
Sbjct: 120 GNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKEN 155

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 15/157 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L  QF + +F+     TI   F  +   ++ Q   L++ DTAGQ  +   
Sbjct: 36  IGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAV 95
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y     G ++VY IT   ++  +        ++T                   I+L+
Sbjct: 96  TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--------------NTVIILI 141
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK DL  +R ++Y+E K+ AE     F+EASAK  +
Sbjct: 142 GNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGE 178

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G  +VGKSSL ++FV GQF +  + TI   F+ +T  +++     ++ DTAG + Y   
Sbjct: 11  LGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSL 70
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y       ++VY IT+ +SF               + +N              I L 
Sbjct: 71  APMYYRGAQAAIVVYDITNEESF--------------ARAKNWVKELQRQASPNIVIALS 116
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R + + E +  A+     F+E SAK
Sbjct: 117 GNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 150

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 15/156 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGK+ +  +F +  F  ++  TI   F ++T  ++ +   L++ DTAGQ+ +   
Sbjct: 12  IGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 71
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y     G +LVY IT+ KSF+               I+N               +++
Sbjct: 72  TTAYYRGAMGIMLVYDITNEKSFD--------------NIRNWIRNIEEHASADVEKMIL 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           GNK D++ +R +S + G++LA  +   F+E SAK +
Sbjct: 118 GNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKAN 153

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 15/156 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGK+ +  +F +  F  ++  TI   F ++T  ++ +   L++ DTAGQ+ +   
Sbjct: 14  IGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 73
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y     G +LVY IT+ KSF+               I+N               +++
Sbjct: 74  TTAYYRGAMGIMLVYDITNEKSFD--------------NIRNWIRNIEEHASADVEKMIL 119
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           GNK D++ +R +S + G++LA  +   F+E SAK +
Sbjct: 120 GNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKAN 155

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 15/157 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGK+ L  +F  G F      TI   F +KT  +N +   L++ DTAGQ+ +   
Sbjct: 32  IGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSI 91
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y    +  +L Y IT  +SF   + L + L ++     N               VLV
Sbjct: 92  TQSYYRSANALILTYDITCEESF---RCLPEWLREIEQYASNKVIT-----------VLV 137
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK DL   R +S    +  +E+    ++E SAK+ D
Sbjct: 138 GNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESD 174

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G  +VGKSSL ++FV GQF +  + TI   F+ +T  +++     ++ DTAG + Y   
Sbjct: 11  LGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSL 70
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y       ++VY IT+  +F               + +N              I L 
Sbjct: 71  APMYYRGAQAAIVVYDITNTDTF--------------ARAKNWVKELQRQASPNIVIALA 116
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R + + E +  A+     F+E SAK
Sbjct: 117 GNKADLASKRAVEFQEAQAYADDNSLLFMETSAK 150

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 29/170 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G    GK+SL + F DG F +SY PT+   ++   ++  +   L + DTAGQD+Y    
Sbjct: 40  VGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLR 99
Query: 61  AQYSMDIHGYVLVYSITSHKSFE-VVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
             +  D    +L + +TS  SF+ +    Y ++     K+               PI++V
Sbjct: 100 PLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKV---------------PIIVV 144
Query: 120 GNKKDLHMER------------MISYDEGKRLAESWKA-GFVEASAKQDD 156
           G K DL  ++             ++Y  G+ +A S  A  ++E SA+  D
Sbjct: 145 GCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHD 194

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 15/153 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G    GKS L  QF++ +F D  + TI   F  K   +  +   L++ DTAGQ+ +   
Sbjct: 17  IGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV 76
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y     G +LVY ITS +++                + N              I+L 
Sbjct: 77  TRSYYRGAAGALLVYDITSRETYNA--------------LTNWLTDARMLASQNIVIILC 122
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           GNKKDL  +R +++ E  R A+  +  F+E SA
Sbjct: 123 GNKKDLDADREVTFLEASRFAQENELMFLETSA 155

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L +QF D +F   +D TI   F  +   ++ +   L++ DTAGQ+ +   
Sbjct: 27  IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI 86
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y     G +LVY IT  ++F            +T  +++              I+L+
Sbjct: 87  TRSYYRGAAGALLVYDITRRETFN----------HLTSWLEDARQHSSSNMV----IMLI 132
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL   R +  +EG+  A      F+E SAK
Sbjct: 133 GNKSDLESRRDVKREEGEAFAREHGLIFMETSAK 166

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 15/153 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G    GKS L  QF++ +F D  + TI   F  K   +  +   L++ DTAGQ+ +   
Sbjct: 16  IGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV 75
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y     G +LVY ITS +++                + N              I+L 
Sbjct: 76  TRSYYRGAAGALLVYDITSRETYNA--------------LTNWLTDARMLASQNIVIILC 121
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           GNKKDL  +R +++ E  R A+  +  F+E SA
Sbjct: 122 GNKKDLDADREVTFLEASRFAQENELMFLETSA 154

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 30/162 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMN--NQDYD-------LKLVDTA 51
           +G   VGK+ L ++F DG F       +  TF+ T  ++  N+  D       L++ DTA
Sbjct: 16  VGDSGVGKTCLLVRFKDGAF-------LAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTA 68
Query: 52  GQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXX 111
           GQ+ +      Y  D H  +L+Y +T+  SF+ +Q    ++ +                 
Sbjct: 69  GQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA--------------Q 114
Query: 112 XXXPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
               ++L+GNK D   ER++  ++G++LA+ +   F+E SAK
Sbjct: 115 HDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAK 156

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 29/170 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  + GK+ L I F   QF + Y PT+   +V    ++ +  +L L DTAGQ++Y  + 
Sbjct: 12  VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 71
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D    ++ +SI S  S E               I               PI+LV
Sbjct: 72  PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 116
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
           GNKKDL    H  R ++         +EG+ +A    A G++E SAK  D
Sbjct: 117 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 166

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 29/170 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  + GK+ L I F   QF + Y PT+   +V    ++ +  +L L DTAGQ++Y  + 
Sbjct: 13  VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 72
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D    ++ +SI S  S E               I               PI+LV
Sbjct: 73  PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 117
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
           GNKKDL    H  R ++         +EG+ +A    A G++E SAK  D
Sbjct: 118 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 167

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 29/170 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  + GK+ L I F   QF + Y PT+   +V    ++ +  +L L DTAGQ++Y  + 
Sbjct: 12  VGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 71
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D    ++ +SI S  S E               I               PI+LV
Sbjct: 72  PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 116
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
           GNKKDL    H  R ++         +EG+ +A    A G++E SAK  D
Sbjct: 117 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 166

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 29/170 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  + GK+ L I F   QF + Y PT+   +V    ++ +  +L L DTAGQ++Y  + 
Sbjct: 13  VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 72
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D    ++ +SI S  S E               I               PI+LV
Sbjct: 73  PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 117
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
           GNKKDL    H  R ++         +EG+ +A    A G++E SAK  D
Sbjct: 118 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 167

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 29/170 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  + GK+ L I F   QF + Y PT+   +V    ++ +  +L L DTAGQ++Y  + 
Sbjct: 11  VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D    ++ +SI S  S E               I               PI+LV
Sbjct: 71  PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 115
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
           GNKKDL    H  R ++         +EG+ +A    A G++E SAK  D
Sbjct: 116 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 165

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 29/170 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  + GK+ L I F   QF + Y PT+   +V    ++ +  +L L DTAGQ++Y  + 
Sbjct: 14  VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 73
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D    ++ +SI S  S E               I               PI+LV
Sbjct: 74  PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 118
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
           GNKKDL    H  R ++         +EG+ +A    A G++E SAK  D
Sbjct: 119 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 168

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 29/170 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  + GK+ L I F   QF + Y PT+   +V    ++ +  +L L DTAGQ++Y  + 
Sbjct: 15  VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 74
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D    ++ +SI S  S E               I               PI+LV
Sbjct: 75  PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 119
Query: 120 GNKKDL----HMERMIS--------YDEGKRLAESWKA-GFVEASAKQDD 156
           GNKKDL    H  R ++         +EG+ +A    A G++E SAK  D
Sbjct: 120 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 169

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGK+SL+  F   Q  D ++   E+ + +T  ++ +D  L +VDT   ++     
Sbjct: 10  LGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSW 69
Query: 61  AQYSMDIHG--YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           +Q S    G  YV+VYSI    SFE    L  +L                      PI+L
Sbjct: 70  SQESCLQGGSAYVIVYSIADRGSFESASELRIQL-------------RRTHQADHVPIIL 116
Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           VGNK DL   R +S +EG+  A  +   F+E SA
Sbjct: 117 VGNKADLARCREVSVEEGRACAVVFDCKFIETSA 150

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 29/170 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  + GK+ L I F   QF + Y PT+   +V    ++ +  +L L DTAGQ++Y  + 
Sbjct: 13  VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 72
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D    ++ +SI S  S E               I               PI+LV
Sbjct: 73  PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 117
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
           GNKKDL    H  R ++         +EG+ +A    A G++E SAK  D
Sbjct: 118 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 167

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 15/153 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS+L  +F   +F      TI   F  ++ +++ +    ++ DTAGQ+ Y   
Sbjct: 35  IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAI 94
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y     G +LVY I  H ++E V+    +L D                     I+LV
Sbjct: 95  TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--------------DSNIVIMLV 140
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           GNK DL   R +  DE +  AE     F+E SA
Sbjct: 141 GNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 173

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 15/153 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS+L  +F   +F      TI   F  ++ +++ +    ++ DTAGQ+ Y   
Sbjct: 26  IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAI 85
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y     G +LVY I  H ++E V+    +L D                     I+LV
Sbjct: 86  TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--------------DSNIVIMLV 131
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           GNK DL   R +  DE +  AE     F+E SA
Sbjct: 132 GNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 164

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 15/153 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS+L  +F   +F      TI   F  ++ +++ +    ++ DTAGQ+ Y   
Sbjct: 11  IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI 70
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y     G +LVY I  H ++E V+    +L D                     I+LV
Sbjct: 71  TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--------------NIVIMLV 116
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           GNK DL   R +  DE +  AE     F+E SA
Sbjct: 117 GNKSDLRHLRAVPTDEARAFAEKNNLSFIETSA 149

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L +QF D +F   +D TI   F  +   ++ +   L++ DTAGQ+ +   
Sbjct: 16  IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSI 75
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y     G +LVY IT   +F            +T  +++              I+L+
Sbjct: 76  TRSYYRGAAGALLVYDITRRDTFN----------HLTTWLEDARQHSNSNMV----IMLI 121
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL   R +  +EG+  A      F+E SAK
Sbjct: 122 GNKSDLESRREVKKEEGEAFAREHGLIFMETSAK 155

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 16/154 (10%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRM-NNQDYDLKLVDTAGQDEYSI 58
           +G   VGKS+L  +F   +F      TI   F  K+ ++ NN+    ++ DTAGQ+ Y  
Sbjct: 13  IGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRA 72
Query: 59  FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
             + Y     G +LVY IT   SFE ++    +L D                     I+L
Sbjct: 73  ITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRD--------------NADSNIVILL 118
Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           VGNK DL   R+I+ ++  + A+  K  F+E SA
Sbjct: 119 VGNKSDLKHLRVINDNDATQYAKKEKLAFIETSA 152

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 29/167 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  + GK+ L I F   QF + Y PT+   ++    ++ +  +L L DTAGQ++Y  + 
Sbjct: 31  VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLR 90
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D    ++ +SI S  S E               I               PI+LV
Sbjct: 91  PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 135
Query: 120 GNKKDL----HMERMIS--------YDEGKRLAESWKA-GFVEASAK 153
           GNKKDL    H  R ++         +EG+ +A    A G++E SAK
Sbjct: 136 GNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           G  +VGKSS  ++    +F ++   T+   F +KT  ++ +   L+L DTAGQ+ +    
Sbjct: 35  GDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIA 94
Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
             Y     G +L+Y +T  KSF  ++   D + D                    PI+LVG
Sbjct: 95  KSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA--------------HETVPIMLVG 140
Query: 121 NKKDLH------MERMISYDEGKRLAESWKAGFVEASAK 153
           NK D+        ++ +    G++LA ++ A F E SAK
Sbjct: 141 NKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAK 179

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 15/155 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKSS+  +FV+  F  + +PTI  +F+ KT +  N+ +   + DTAGQ+ +   
Sbjct: 11  LGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRAL 70
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y       ++VY IT  ++F                ++N              + + 
Sbjct: 71  APMYYRGSAAAIIVYDITKEETFST--------------LKNWVRELRQHGPPSIVVAIA 116
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           GNK DL   R +   + K  A+S  A FVE SAK 
Sbjct: 117 GNKCDLTDVREVMERDAKDYADSIHAIFVETSAKN 151

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 15/153 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G    GKS L  QF++ +F D  + TI   F  K   +  +   L++ DTAG + +   
Sbjct: 14  IGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSV 73
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y     G +LVY ITS +++                + N              I+L 
Sbjct: 74  TRSYYRGAAGALLVYDITSRETYNA--------------LTNWLTDARMLASQNIVIILC 119
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           GNKKDL  +R +++ E  R A+  +  F+E SA
Sbjct: 120 GNKKDLDADREVTFLEASRFAQENELMFLETSA 152

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 29/167 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  + GK+ L I F   QF + Y PT+   ++    ++ +  +L L DTAGQ++Y  + 
Sbjct: 31  VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLR 90
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D    ++ +SI S  S E               I               PI+LV
Sbjct: 91  PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFXPNVPIILV 135
Query: 120 GNKKDL----HMERMIS--------YDEGKRLAESWKA-GFVEASAK 153
           GNKKDL    H  R ++         +EG+ +A    A G++E SAK
Sbjct: 136 GNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 70/161 (43%), Gaps = 23/161 (14%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-----VKTTRMNNQDYDLKLVDTAGQDE 55
           +G   VGKSSL ++F D    D++DP +  T      VKT  ++     L + DTAGQ+ 
Sbjct: 21  IGESGVGKSSLLLRFTD----DTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76
Query: 56  YSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXP 115
           +      Y     G +LVY +T   +F        KL +   +++               
Sbjct: 77  FRTLTPSYYRGAQGVILVYDVTRRDTFV-------KLDNWLNELETYCTRNDIVN----- 124
Query: 116 IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
             LVGNK D    R +  +EG + A      F+EASAK  D
Sbjct: 125 -XLVGNKID-KENREVDRNEGLKFARKHSXLFIEASAKTCD 163

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 17/154 (11%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G    GKS L  QF++ +F    + TI   F  +   +  +   L++ DTAGQ+ +   
Sbjct: 31  IGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV 90
Query: 60  PAQYSMDIHGYVLVYSITSHKSFE-VVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
              Y     G +LVY ITS +++  +   L D     +  I                ++L
Sbjct: 91  TRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNI---------------VVIL 135
Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
            GNKKDL  ER +++ E  R A+  +  F+E SA
Sbjct: 136 CGNKKDLDPEREVTFLEASRFAQENELMFLETSA 169

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKSS+  +FV   F  +  PTI  +F+ KT    N+ +   + DTAGQ+ +   
Sbjct: 29  LGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSL 88
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y       V+VY IT   SF  ++    +L +     +N              + + 
Sbjct: 89  APMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP--ENIV------------MAIA 134
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           GNK DL   R +   + K  AES  A  VE SAK 
Sbjct: 135 GNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKN 169

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 24/163 (14%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTT---RMNNQD--------YDLKLVD 49
           +G   VGK+S+  Q+ DG+F   +  T+   F +     R N  D          L+L D
Sbjct: 17  LGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWD 76
Query: 50  TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXX 109
           TAG + +      +  D  G++L++ +T+ +SF  V+    +L  M    +N        
Sbjct: 77  TAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQL-QMHAYSENP------- 128
Query: 110 XXXXXPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
                 IVL GNK DL  +R +  +E + LAE +   + E SA
Sbjct: 129 -----DIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA 166

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 15/153 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS+L  +F   +F      TI   F  ++ +++ +    ++ DTAG + Y   
Sbjct: 35  IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAI 94
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y     G +LVY I  H ++E V+    +L D                     I+LV
Sbjct: 95  TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--------------DSNIVIMLV 140
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           GNK DL   R +  DE +  AE     F+E SA
Sbjct: 141 GNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 173

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 29/170 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  + GK+ L I     QF + Y PT+   +V    ++ +  +L L DTAGQ++Y  + 
Sbjct: 11  VGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D    ++ +SI S  S E               I               PI+LV
Sbjct: 71  PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 115
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
           GNKKDL    H  R ++         +EG+ +A    A G++E SAK  D
Sbjct: 116 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 165

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 29/170 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  + GK+ L I     QF + Y PT+   +V    ++ +  +L L DTAGQ++Y  + 
Sbjct: 11  VGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D    ++ +SI S  S E               I               PI+LV
Sbjct: 71  PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 115
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
           GNKKDL    H  R ++         +EG+ +A    A G++E SAK  D
Sbjct: 116 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 165

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 1  MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
          +G   VGKS L ++F D  + +SY  TI   F ++T  ++ +   L++ DTAGQ+ +   
Sbjct: 4  IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 63
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQ 86
           + Y    HG ++VY +T  +SF  V+
Sbjct: 64 TSSYYRGAHGIIVVYDVTDQESFNNVK 90

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 29/170 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  + GK+ L I     QF + Y PT+   +V    ++ +  +L L DTAGQ++Y  + 
Sbjct: 9   VGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 68
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D    ++ +SI S  S E               I               PI+LV
Sbjct: 69  PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 113
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
           GNKKDL    H  R ++         +EG+ +A    A G++E SAK  D
Sbjct: 114 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 163

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 15/153 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS+L  +F   +F      TI   F  ++ +++ +    ++ DTAG + Y   
Sbjct: 14  IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAI 73
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y     G +LVY I  H ++E V+    +L D                     I+LV
Sbjct: 74  TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--------------DSNIVIMLV 119
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           GNK DL   R +  DE +  AE     F+E SA
Sbjct: 120 GNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 152

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 29/170 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  + GK+ L I     QF + Y PT+   +V    ++ +  +L L DTAGQ++Y  + 
Sbjct: 9   VGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 68
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D    ++ +SI S  S E               I               PI+LV
Sbjct: 69  PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 113
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
           GNKKDL    H  R ++         +EG+ +A    A G++E SAK  D
Sbjct: 114 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 163

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 29/170 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  + GK+ L I     QF + Y PT+   +V    ++ +  +L L DTAGQ++Y  + 
Sbjct: 11  VGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D    ++ +SI S  S E               I               PI+LV
Sbjct: 71  PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 115
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
           GNKKDL    H  R ++         +EG+ +A    A G++E SAK  D
Sbjct: 116 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 165

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 72/170 (42%), Gaps = 29/170 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  + GK+ L I F   QF   Y PT+   +V    ++ +  +L L DTAGQ++Y    
Sbjct: 11  VGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRAR 70
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D    ++ +SI S  S E               I               PI+LV
Sbjct: 71  PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 115
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
           GNKKDL    H  R ++          EG+ +A    A G++E SAK  D
Sbjct: 116 GNKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKD 165

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 15/153 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS+L  +F   +F      TI   F  ++ +++ +    ++ DTAG + Y   
Sbjct: 17  IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAI 76
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y     G +LVY I  H ++E V+    +L D                     I LV
Sbjct: 77  TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--------------DSNIVIXLV 122
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           GNK DL   R +  DE +  AE     F+E SA
Sbjct: 123 GNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 155

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 15/153 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS+L  +F   +F      TI   F  ++ +++ +    ++ DTAG + Y   
Sbjct: 11  IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAI 70
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y     G +LVY I  H ++E V+    +L D                     I LV
Sbjct: 71  TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--------------DSNIVIXLV 116
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           GNK DL   R +  DE +  AE     F+E SA
Sbjct: 117 GNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 149

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 15/154 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G    GKSSL ++FV  QFV+  + TI   F  +T  +N+     ++ DTAGQ+ Y   
Sbjct: 18  LGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 77
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y       ++V+ +T+  SFE  +    +L                       + L 
Sbjct: 78  APMYYRGAAAAIIVFDVTNQASFERAKKWVQEL--------------QAQGNPNMVMALA 123
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL   R ++ ++ +  A+     F+E SAK
Sbjct: 124 GNKSDLLDARKVTAEDAQTYAQENGLFFMETSAK 157

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKSS+  +FV+  F  + +PTI  +F+ KT +  N+ +   + DTAG + +   
Sbjct: 12  LGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRAL 71
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              Y       ++VY IT  ++F                ++N              + + 
Sbjct: 72  APMYYRGSAAAIIVYDITKEETFST--------------LKNWVRELRQHGPPSIVVAIA 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           GNK DL   R +   + K  A+S  A FVE SAK 
Sbjct: 118 GNKCDLTDVREVMERDAKDYADSIHAIFVETSAKN 152

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 15/153 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGK++L  +F   +F      TI   F  +T  +       ++ DTAG + Y   
Sbjct: 31  IGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI 90
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y     G +LV+ +T H+++ VV+    +L D                     ++LV
Sbjct: 91  TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYD--------------HAEATIVVMLV 136
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           GNK DL   R +  +E +  AE+    F+E SA
Sbjct: 137 GNKSDLSQAREVPTEEARMFAENNGLLFLETSA 169

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+SL + +    +   Y PT  + F     ++ +   L+L DTAGQDE+  + 
Sbjct: 26  VGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLR 85
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y+  DI  ++L +S+ S  SF+               +               PI+L
Sbjct: 86  PLCYTNTDI--FLLCFSVVSPSSFQ--------------NVSEKWVPEIRCHCPKAPIIL 129
Query: 119 VGNKKDLH------------MERMISYDEGKRLAESWKAG-FVEASA 152
           VG + DL              E+ +  +  K LAE  KA  ++E SA
Sbjct: 130 VGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA 176

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 15/153 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGK++L  +F   +F      TI   F  +T  +       ++ DTAG + Y   
Sbjct: 16  IGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI 75
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y     G +LV+ +T H+++ VV+    +L D                     ++LV
Sbjct: 76  TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYD--------------HAEATIVVMLV 121
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           GNK DL   R +  +E +  AE+    F+E SA
Sbjct: 122 GNKSDLSQAREVPTEEARMFAENNGLLFLETSA 154

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 29/167 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  + GK+ L I     QF + Y PT+   ++    ++ +  +L L DTAGQ++Y  + 
Sbjct: 11  VGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D    ++ +SI S  S E               I               PI+LV
Sbjct: 71  PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 115
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAK 153
           GNKKDL    H  R ++         +EG+ +A    A G++E SAK
Sbjct: 116 GNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 162

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 15/158 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G  +VGK+ L+ +F  G+F D  + TI   F  +   ++ +   ++L DTAGQ+ +   
Sbjct: 26  IGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKS 85
Query: 60  PAQ-YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
             Q Y  ++H  V VY +T+  SF  +    ++                       P +L
Sbjct: 86  MVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEEC-------------KQHLLANDIPRIL 132
Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           VGNK DL     +  D  ++ A++      E SAK  +
Sbjct: 133 VGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPN 170

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 15/158 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G  +VGK+ L+ +F  G+F D  + TI   F  +   ++ +   ++L DTAGQ+ +   
Sbjct: 35  IGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKS 94
Query: 60  PAQ-YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
             Q Y  ++H  V VY  T+  SF  +    ++                       P +L
Sbjct: 95  MVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEEC-------------KQHLLANDIPRIL 141
Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           VGNK DL     +  D  ++ A++      E SAK  +
Sbjct: 142 VGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPN 179

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIE---NTFVKTTRMNNQDYDLKLVDTAGQDEYS 57
           +G   VGKS+L+  F  G   D   P  E   +T+ ++  ++ ++  L + D   QD   
Sbjct: 13  LGAPGVGKSALARIF--GGVEDG--PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 68
Query: 58  IFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIV 117
             P         YV+VYS+T   SFE    L  +L                      PI+
Sbjct: 69  WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQL-------------RRARQTDDVPII 115
Query: 118 LVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           LVGNK DL   R +S DEG+  A  +   F+E SA
Sbjct: 116 LVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA 150

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIE---NTFVKTTRMNNQDYDLKLVDTAGQDEYS 57
           +G   VGKS+L+  F  G   D   P  E   +T+ ++  ++ ++  L + D   QD   
Sbjct: 13  LGAPGVGKSALARIF--GGVEDG--PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 68
Query: 58  IFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIV 117
             P         YV+VYS+T   SFE    L  +L                      PI+
Sbjct: 69  WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQL-------------RRARQTDDVPII 115
Query: 118 LVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           LVGNK DL   R +S DEG+  A  +   F+E SA
Sbjct: 116 LVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA 150

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 27/164 (16%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS-IF 59
           +G  +VGK+ + I +   +F   Y PT+ + F     ++ Q  +L L DTAGQ++YS + 
Sbjct: 15  VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLR 74
Query: 60  PAQY-SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   DI  +VL +S+ S  S+E   +L   + ++     N             PIVL
Sbjct: 75  PLSYRGADI--FVLAFSLISKASYE--NVLKKWMPELRRFAPN------------VPIVL 118
Query: 119 VGNKKDLHMER--------MISYDEGKRLAES-WKAGFVEASAK 153
           VG K DL  ++        +I+  +G+ L +    A ++E S+K
Sbjct: 119 VGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSK 162

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIE---NTFVKTTRMNNQDYDLKLVDTAGQDEYS 57
           +G   VGKS+L+  F  G   D   P  E   +T+ ++  ++ ++  L + D   QD   
Sbjct: 8   LGAPGVGKSALARIF--GGVEDG--PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 63
Query: 58  IFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIV 117
             P         YV+VYS+T   SFE    L  +L                      PI+
Sbjct: 64  WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQL-------------RRARQTDDVPII 110
Query: 118 LVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           LVGNK DL   R +S DEG+  A  +   F+E SA
Sbjct: 111 LVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA 145

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 73/170 (42%), Gaps = 29/170 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  + GK+ L I     QF + Y PT+   +V    ++ +  +L L DTAG ++Y  + 
Sbjct: 14  VGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLR 73
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D    ++ +SI S  S E               I               PI+LV
Sbjct: 74  PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 118
Query: 120 GNKKDL----HMERMIS--------YDEGKRLAESWKA-GFVEASAKQDD 156
           GNKKDL    H  R ++         +EG+ +A    A G++E SAK  D
Sbjct: 119 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 168

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 20/157 (12%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G  SVGK+ +  +F  G F +    TI   F +KT  +  +   L++ DTAGQ+ +   
Sbjct: 35  VGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTI 94
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGK--IQNXXXXXXXXXXXXXPIV 117
              Y    +G +L Y IT   SF  V    + +    G   +Q                +
Sbjct: 95  TQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQ----------------L 138
Query: 118 LVGNKKDLHMERMISYDEGKRLAESWK-AGFVEASAK 153
           L+GNK DL   R +S  E + LAE +     +E SAK
Sbjct: 139 LIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAK 175

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAGQ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +  + ++T                  P +L
Sbjct: 69  PLSYPQTDV--FLVCFSVVSPSSFENVKEKW--VPEITHHCPK------------TPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAGQ++Y  + 
Sbjct: 13  VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 72
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE               ++              P +L
Sbjct: 73  PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 116
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 117 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 163

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAGQ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE               ++              P +L
Sbjct: 69  PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAGQ++Y  + 
Sbjct: 12  VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 71
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE               ++              P +L
Sbjct: 72  PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 115
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 116 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 162

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAGQ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE               ++              P +L
Sbjct: 69  PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAGQ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE               ++              P +L
Sbjct: 69  PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAGQ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE               ++              P +L
Sbjct: 69  PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAGQ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE               ++              P +L
Sbjct: 69  PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAGQ++Y  + 
Sbjct: 9   VGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE               ++              P +L
Sbjct: 69  PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 29/167 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  + GK+ L I F   +F + Y PT+   +V    ++ +  +L L DTAGQ++Y  + 
Sbjct: 31  VGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 90
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D    ++ +S+ S  S E               I               PI+LV
Sbjct: 91  PLSYP-DTDVILMCFSVDSPDSLE--------------NIPEKWVPEVKHFCPNVPIILV 135
Query: 120 GNKKDLH--------MERM----ISYDEGKRLAESWKA-GFVEASAK 153
            NKKDL         + RM    +  D+G+ +A   +A  ++E SAK
Sbjct: 136 ANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 182

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAGQ++Y  + 
Sbjct: 11  VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 70
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE               ++              P +L
Sbjct: 71  PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 114
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 115 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 161

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAGQ++Y  + 
Sbjct: 12  VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 71
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +  + ++T                  P +L
Sbjct: 72  PLSYPQTDV--FLVCFSVVSPSSFENVKEKW--VPEITHHCPK------------TPFLL 115
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 116 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 162

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAGQ++Y  + 
Sbjct: 11  VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 70
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +  + ++T                  P +L
Sbjct: 71  PLSYPQTDV--FLVCFSVVSPSSFENVKEKW--VPEITHHCPK------------TPFLL 114
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 115 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 161

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAGQ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE               ++              P +L
Sbjct: 69  PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAGQ++Y  + 
Sbjct: 10  VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 69
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE               ++              P +L
Sbjct: 70  PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 113
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 114 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 160

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAGQ++Y  + 
Sbjct: 19  VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 78
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE               ++              P +L
Sbjct: 79  PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 122
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 123 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 169

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAGQ++Y  + 
Sbjct: 16  VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 75
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +  + ++T                  P +L
Sbjct: 76  PLSYPQTDV--FLVCFSVVSPSSFENVKEKW--VPEITHHCPK------------TPFLL 119
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 120 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 166

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAGQ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +  + ++T                  P +L
Sbjct: 69  PLSYPQTDV--FLVCFSVVSPSSFENVKEKW--VPEITHHCPK------------TPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAGQ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE               ++              P +L
Sbjct: 69  PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAGQ++Y  + 
Sbjct: 16  VGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 75
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +  + ++T                  P +L
Sbjct: 76  PLSYPQTDV--FLVCFSVVSPSSFENVKEKW--VPEITHHCPK------------TPFLL 119
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 120 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 166

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 26/160 (16%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIE----NTFVKTTRMNNQDYDLKLVD---TAGQ 53
           +G + VGKS+L+  F      DS D   E    +T+ +T  ++ +   + L+D     G+
Sbjct: 12  IGEQGVGKSTLANIFAGVH--DSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE 69
Query: 54  DEYSIFPAQYSMDI-HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXX 112
           +E+      + M +   Y++VYSIT   SFE    L  +L                    
Sbjct: 70  NEW---LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL-------------RRARQTE 113
Query: 113 XXPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
             PI+LVGNK DL   R +S  EG+  A  +   F+E SA
Sbjct: 114 DIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSA 153

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 26/160 (16%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIE----NTFVKTTRMNNQDYDLKLVD---TAGQ 53
           +G + VGKS+L+  F      DS D   E    +T+ +T  ++ +   + L+D     G+
Sbjct: 43  IGEQGVGKSTLANIFAGVH--DSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE 100
Query: 54  DEYSIFPAQYSMDI-HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXX 112
           +E+      + M +   Y++VYSIT   SFE    L  +L                    
Sbjct: 101 NEW---LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL-------------RRARQTE 144
Query: 113 XXPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
             PI+LVGNK DL   R +S  EG+  A  +   F+E SA
Sbjct: 145 DIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSA 184

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +F   Y P + + +  T  +  + Y L L DTAGQ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE               ++              P +L
Sbjct: 69  PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +    Y PT+ + +  T  +  + Y L L DTAGQ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE               ++              P +L
Sbjct: 69  PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAG ++Y  + 
Sbjct: 13  VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLR 72
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE               ++              P +L
Sbjct: 73  PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 116
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 117 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 163

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L + + +  F + Y PT+ + +  +  +  + Y L L DTAGQ++Y  + 
Sbjct: 24  VGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLR 83
Query: 60  PAQYSM-DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y M D+  +++ +S+ +  SF+               ++              P +L
Sbjct: 84  PLSYPMTDV--FLICFSVVNPASFQ--------------NVKEEWVPELKEYAPNVPFLL 127
Query: 119 VGNKKDLH------------MERMISYDEGKRLA-ESWKAGFVEASA 152
           +G + DL              E+ I  ++G++LA E     +VE SA
Sbjct: 128 IGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 29/167 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  + GK+ L I    GQF + Y PT+   +V    ++ +  +L L DTAGQ++Y  + 
Sbjct: 16  VGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLR 75
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D +  ++ +SI    S E               +Q              PI+LV
Sbjct: 76  PLSYP-DSNVVLICFSIDLPDSLE--------------NVQEKWIAEVLHFCQGVPIILV 120
Query: 120 GNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASAK 153
           G K DL      +E++       ++  EG+ +A+   A G+ E SAK
Sbjct: 121 GCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAK 167

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 26/164 (15%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYD----------LKLVD 49
           +G   VGK++   ++ D +F   +  T+   F  K    N Q  +          L+L D
Sbjct: 31  LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWD 90
Query: 50  TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXX 109
           TAGQ+ +      +  D  G++L++ +TS +SF                ++N        
Sbjct: 91  TAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFL--------------NVRNWMSQLQAN 136
Query: 110 XXXXXP-IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
                P IVL+GNK DL  +R ++  + + LA+ +   + E SA
Sbjct: 137 AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA 180

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAG ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE               ++              P +L
Sbjct: 69  PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
           VG + DL            + ++ I+ +  ++LA   KA  +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 17/155 (10%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDP-TIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS+L+  F   Q   +++P   E+T+ +   ++ ++  L + D   Q +   +
Sbjct: 29  VGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGW 88
Query: 60  PAQYSMDIH-GYVLVYSITSHKSFEVVQILYDKLLDM-TGKIQNXXXXXXXXXXXXXPIV 117
              + +     +++V+S+T  +SF  V    + LL +  G+  +             P++
Sbjct: 89  LRDHCLQTGDAFLIVFSVTDRRSFSKVP---ETLLRLRAGRPHHDL-----------PVI 134
Query: 118 LVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           LVGNK DL   R +S +EG+ LA +     +E SA
Sbjct: 135 LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSA 169

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L + F  G+   +Y PT+   F    +  N+++ L L DTAGQ+EY  + 
Sbjct: 29  VGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLR 88
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYD 90
           P  Y+ D    +L +++ +  SF+ +   ++
Sbjct: 89  PLSYA-DSDVVLLCFAVNNRTSFDNISTKWE 118

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L + F  G+   +Y PT+   F    +  N+++ L L DTAGQ+EY  + 
Sbjct: 28  VGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLR 87
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYD 90
           P  Y+ D    +L +++ +  SF+ +   ++
Sbjct: 88  PLSYA-DSDVVLLCFAVNNRTSFDNISTKWE 117

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAGQ++Y  + 
Sbjct: 10  VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 69
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +                         PI+L
Sbjct: 70  PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPHTPILL 113
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLA-ESWKAGFVEASA 152
           VG K DL      +ER+       I+Y +G  +A E     ++E SA
Sbjct: 114 VGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 160

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAGQ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +                         PI+L
Sbjct: 69  PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPHTPILL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLA-ESWKAGFVEASA 152
           VG K DL      +ER+       I+Y +G  +A E     ++E SA
Sbjct: 113 VGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 159

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 26/160 (16%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIE----NTFVKTTRMNNQDYDLKLVD---TAGQ 53
           +G + VGKS+L+  F      DS D   E    +T+ +T  ++ +   + L+D     G+
Sbjct: 12  IGEQGVGKSTLANIFAGVH--DSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE 69
Query: 54  DEYSIFPAQYSMDI-HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXX 112
           +E+      + M +   Y++VYSIT   SFE    L  +L                    
Sbjct: 70  NEW---LHDHXMQVGDAYLIVYSITDRASFEKASELRIQL-------------RRARQTE 113
Query: 113 XXPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
             PI+LVGNK DL   R +S  EG+  A  +   F+E SA
Sbjct: 114 DIPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSA 153

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAGQ++Y  + 
Sbjct: 10  VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 69
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +                         PI+L
Sbjct: 70  PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPHTPILL 113
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLA-ESWKAGFVEASA 152
           VG K DL      +ER+       I+Y +G  +A E     ++E SA
Sbjct: 114 VGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 160

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 26/164 (15%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYD----------LKLVD 49
           +G   VGK++   ++ D +F   +  T+   F  K    + Q  D          L+L D
Sbjct: 17  LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWD 76
Query: 50  TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXX 109
           TAG + +      +  D  G++L++ +TS +SF                ++N        
Sbjct: 77  TAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFL--------------NVRNWMSQLQAN 122
Query: 110 XXXXXP-IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
                P IVL+GNK DL  +R ++  + + LAE +   + E SA
Sbjct: 123 AYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSA 166

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAGQ++Y  + 
Sbjct: 36  VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 95
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +                         PI+L
Sbjct: 96  PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 139
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  +A+   A  ++E SA
Sbjct: 140 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAGQ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +    ++     N             PI+L
Sbjct: 69  PLSYPQTDV--FLICFSLVSPASFENVRAKWYP--EVRHHCPN------------TPIIL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  +A+   A  ++E SA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 26/160 (16%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIE----NTFVKTTRMNNQDYDLKLVD---TAGQ 53
           +G + VGKS+L+  F      DS D   E    +T+ +T  ++ +   + L+D     G+
Sbjct: 12  IGEQGVGKSTLANIFAGVH--DSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE 69
Query: 54  DEYSIFPAQYSMDI-HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXX 112
           +E+      + M +   Y++VYSIT   SFE    L  +L                    
Sbjct: 70  NEW---LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL-------------RRARQTE 113
Query: 113 XXPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
             PI+LVGNK DL   R +S  EG+  A  +   F+E SA
Sbjct: 114 DIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSA 153

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAGQ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +                         PI+L
Sbjct: 69  PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  +A+   A  ++E SA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAGQ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +    ++     N             PI+L
Sbjct: 69  PLSYPQTDV--FLICFSLVSPASFENVRAKWYP--EVRHHCPN------------TPIIL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  +A+   A  ++E SA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAGQ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +                         PI+L
Sbjct: 69  PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  +A+   A  ++E SA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAGQ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +                         PI+L
Sbjct: 69  PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  +A+   A  ++E SA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 21/160 (13%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGK+SL  Q+V+ +F + Y  TI   F+ K   ++++   +++ DTAGQ+ +   
Sbjct: 14  LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL 73
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              +       VLV+ +T+  +F+ +    D+ L     IQ              P V++
Sbjct: 74  GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL-----IQ-----ASPRDPENFPFVVL 123
Query: 120 GNKKDLHMERMISYDEGKRLAESW-----KAGFVEASAKQ 154
           GNK DL   ++ +     + A++W        + E SAK+
Sbjct: 124 GNKIDLENRQVAT-----KRAQAWCYSKNNIPYFETSAKE 158

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 26/164 (15%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYD----------LKLVD 49
           +G   VGK++   ++ D +F   +  T+   F  K    + Q  D          L+L D
Sbjct: 17  LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWD 76
Query: 50  TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXX 109
           TAG + +      +  D  G++L++ +TS +SF                ++N        
Sbjct: 77  TAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFL--------------NVRNWMSQLQAN 122
Query: 110 XXXXXP-IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
                P IVL+GNK DL  +R ++  + + LAE +   + E SA
Sbjct: 123 AYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSA 166

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 21/160 (13%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGK+SL  Q+V+ +F + Y  TI   F+ K   ++++   +++ DTAGQ+ +   
Sbjct: 14  LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL 73
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              +       VLV+ +T+  +F+ +    D+ L     IQ              P V++
Sbjct: 74  GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL-----IQ-----ASPRDPENFPFVVL 123
Query: 120 GNKKDLHMERMISYDEGKRLAESW-----KAGFVEASAKQ 154
           GNK DL   ++ +     + A++W        + E SAK+
Sbjct: 124 GNKIDLENRQVAT-----KRAQAWCYSKNNIPYFETSAKE 158

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAGQ++Y  + 
Sbjct: 28  VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 87
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +                         PI+L
Sbjct: 88  PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 131
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  +A+   A  ++E SA
Sbjct: 132 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 178

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAGQ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +                         PI+L
Sbjct: 69  PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  +A+   A  ++E SA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 18/128 (14%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS-IF 59
           +G  +VGK+ L I +    F   Y PT+ + F     +N    +L L DTAGQ++Y+ + 
Sbjct: 14  VGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLR 73
Query: 60  PAQY-SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  ++L +S+ S  S+E V   +   L                     PIVL
Sbjct: 74  PLSYRGADV--FILAFSLISKASYENVSKKWIPELKHYAP--------------GVPIVL 117
Query: 119 VGNKKDLH 126
           VG K DL 
Sbjct: 118 VGTKLDLR 125

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAGQ++Y  + 
Sbjct: 19  VGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 78
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +                         PI+L
Sbjct: 79  PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 122
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  +A+   A  ++E SA
Sbjct: 123 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 169

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAGQ++Y  + 
Sbjct: 16  VGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 75
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +                         PI+L
Sbjct: 76  PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 119
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  +A+   A  ++E SA
Sbjct: 120 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 166

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 63/157 (40%), Gaps = 15/157 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS+L  +F   +F      TI   F  +T  + N+    ++ DTAG + Y   
Sbjct: 16  IGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAI 75
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y     G ++VY I+   S+E       +L +                     + L+
Sbjct: 76  TSAYYRGAVGALIVYDISKSSSYENCNHWLTELRE--------------NADDNVAVGLI 121
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK DL   R +  DE K  A   +  F E SA   D
Sbjct: 122 GNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSD 158

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 26/164 (15%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYD----------LKLVD 49
           +G   VGK++   ++ D +F   +  T+   F  K    + Q  D          L+L D
Sbjct: 17  LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWD 76
Query: 50  TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXX 109
           TAG + +      +  D  G++L + +TS +SF                ++N        
Sbjct: 77  TAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFL--------------NVRNWXSQLQAN 122
Query: 110 XXXXXP-IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
                P IVL+GNK DL  +R ++  + + LAE +   + E SA
Sbjct: 123 AYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSA 166

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 26/164 (15%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYD----------LKLVD 49
           +G   VGK++   ++ D +F   +  T+   F  K    + Q  D          L+L D
Sbjct: 17  LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWD 76
Query: 50  TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXX 109
           TAG + +      +  D  G++L + +TS +SF                ++N        
Sbjct: 77  TAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFL--------------NVRNWXSQLQAN 122
Query: 110 XXXXXP-IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
                P IVL+GNK DL  +R ++  + + LAE +   + E SA
Sbjct: 123 AYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSA 166

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 15/153 (9%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS+L  +F   +F      TI   F  +T  +  +    ++ DTAGQ+ Y   
Sbjct: 19  IGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI 78
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
            + Y     G ++VY I+   S+E       +L +                     + L+
Sbjct: 79  TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRE--------------NADDNVAVGLI 124
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           GNK DL   R +  +E K  A+  +  F E SA
Sbjct: 125 GNKSDLAHLRAVPTEESKTFAQENQLLFTETSA 157

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAGQ++Y  + 
Sbjct: 11  VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 70
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+   ++ +S+ S  SFE V+  +    ++     N             PI+L
Sbjct: 71  PLSYPQTDVS--LICFSLVSPASFENVRAKW--YPEVRHHCPN------------TPIIL 114
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  +A+   A  ++E SA
Sbjct: 115 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAGQ++Y  + 
Sbjct: 13  VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 72
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+   ++ +S+ S  SFE V+  +                         PI+L
Sbjct: 73  PLSYPQTDVS--LICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 116
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  +A+   A  ++E SA
Sbjct: 117 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 163

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAGQ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+   ++ +S+ S  SFE V+  +    ++     N             PI+L
Sbjct: 69  PLSYPQTDVS--LICFSLVSPASFENVRAKWYP--EVRHHCPN------------TPIIL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  +A+   A  ++E SA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAGQ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+   ++ +S+ S  SFE V+  +                         PI+L
Sbjct: 69  PLSYPQTDVS--LICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  +A+   A  ++E SA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 21/160 (13%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGK+SL  Q+V+ +F + Y  TI   F+ K   ++++   +++ DTAGQ+ +   
Sbjct: 14  LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL 73
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              +       VLV+ +T+  +F+ +    D+ L     IQ              P V++
Sbjct: 74  GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL-----IQ-----ASPRDPENFPFVVL 123
Query: 120 GNKKDLHMERMISYDEGKRLAESW-----KAGFVEASAKQ 154
           GNK D    ++ +     + A++W        + E SAK+
Sbjct: 124 GNKIDFENRQVAT-----KRAQAWCYSKNNIPYFETSAKE 158

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++++  +L L DTAGQ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  S+E V+  +                         PI+L
Sbjct: 69  PLSYPQTDV--FLICFSLVSPASYENVRAKW--------------FPEVRHHCPSTPIIL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESW-KAGFVEASA 152
           VG K DL      +E++       I+Y +G  LA+      ++E SA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 159

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++++  +L L DTAGQ++Y  + 
Sbjct: 15  VGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLR 74
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  S+E V+  +                         PI+L
Sbjct: 75  PLSYPQTDV--FLICFSLVSPASYENVRAKW--------------FPEVRHHCPSTPIIL 118
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  LA+   +  ++E SA
Sbjct: 119 VGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 165

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++++  +L L DTAGQ++Y  + 
Sbjct: 16  VGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLR 75
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  S+E V+  +                         PI+L
Sbjct: 76  PLSYPQTDV--FLICFSLVSPASYENVRAKW--------------FPEVRHHCPSTPIIL 119
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESW-KAGFVEASA 152
           VG K DL      +E++       I+Y +G  LA+      ++E SA
Sbjct: 120 VGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 166

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 75/155 (48%), Gaps = 17/155 (10%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYD-PTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS+L+  F   Q  ++++    E+T+ +   ++ ++  L + D   Q +   +
Sbjct: 18  LGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW 77
Query: 60  PAQYSMDIH-GYVLVYSITSHKSFEVVQILYDKLLDM-TGKIQNXXXXXXXXXXXXXPIV 117
              + +     +++V+S+T  +SF  V    + LL +  G+  +             P++
Sbjct: 78  LQDHCLQTGDAFLIVFSVTDRRSFSKVP---ETLLRLRAGRPHHDL-----------PVI 123
Query: 118 LVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           LVGNK DL   R +S +EG+ LA +     +E SA
Sbjct: 124 LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSA 158

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +        Y PT+ + +     ++ +  +L L DTAGQ++Y  + 
Sbjct: 36  VGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 95
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +                         PI+L
Sbjct: 96  PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 139
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  +A+   A  ++E SA
Sbjct: 140 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAG ++Y  + 
Sbjct: 36  VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR 95
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +                         PI+L
Sbjct: 96  PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 139
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  +A+   A  ++E SA
Sbjct: 140 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAG ++Y  + 
Sbjct: 12  VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR 71
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +    ++     N             PI+L
Sbjct: 72  PLSYPQTDV--FLICFSLVSPASFENVRAKWYP--EVRHHCPN------------TPIIL 115
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  +A+   A  ++E SA
Sbjct: 116 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 162

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAG ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +    ++     N             PI+L
Sbjct: 69  PLSYPQTDV--FLICFSLVSPASFENVRAKWYP--EVRHHCPN------------TPIIL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  +A+   A  ++E SA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAG ++Y  + 
Sbjct: 9   VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR 68
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SFE V+  +    ++     N             PI+L
Sbjct: 69  PLSYPQTDV--FLICFSLVSPASFENVRAKWYP--EVRHHCPN------------TPIIL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  +A+   A  ++E SA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 21/160 (13%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGK+SL  Q+V+ +F + Y  TI   F+ K   ++++   +++ DTAG + +   
Sbjct: 14  LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSL 73
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
              +       VLV+ +T+  +F+ +    D+ L     IQ              P V++
Sbjct: 74  GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL-----IQ-----ASPRDPENFPFVVL 123
Query: 120 GNKKDLHMERMISYDEGKRLAESW-----KAGFVEASAKQ 154
           GNK DL   ++ +     + A++W        + E SAK+
Sbjct: 124 GNKIDLENRQVAT-----KRAQAWCYSKNNIPYFETSAKE 158

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 29/170 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G    GK++L   F    F ++Y PT+   +  +  ++ Q  +L L DT+G   Y ++ 
Sbjct: 34  VGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVR 93
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D    ++ + I+  ++ + V      L    G+IQ               ++LV
Sbjct: 94  PLSYP-DSDAVLICFDISRPETLDSV------LKKWKGEIQEFCPNTK--------MLLV 138
Query: 120 GNKKDL------------HMERMISYDEGKRLAESWKAG-FVEASAKQDD 156
           G K DL            H +  +SYD+G  +A+   A  ++E SA Q +
Sbjct: 139 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSE 188

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 13/145 (8%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV--KTTRMNNQDYDLKLVDTAGQDEYSI 58
           +G   VGK+SL  ++V+ ++   Y  TI   F+  + T   ++   +++ DTAGQ+ +  
Sbjct: 14  LGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS 73
Query: 59  FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
               +       VLVY +T+  SFE ++   D+ L                     P V+
Sbjct: 74  LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFL----------VHANVNSPETFPFVI 123
Query: 119 VGNKKDL-HMERMISYDEGKRLAES 142
           +GNK D    ++++S    + LA+S
Sbjct: 124 LGNKIDAEESKKIVSEKSAQELAKS 148

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 29/170 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G    GK++L   F    F ++Y PT+   +  +  ++ Q  +L L DT+G   Y ++ 
Sbjct: 13  VGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVR 72
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D    ++ + I+  ++ + V      L    G+IQ               ++LV
Sbjct: 73  PLSYP-DSDAVLICFDISRPETLDSV------LKKWKGEIQEFCPNTK--------MLLV 117
Query: 120 GNKKDL------------HMERMISYDEGKRLAESWKAG-FVEASAKQDD 156
           G K DL            H +  +SYD+G  +A+   A  ++E SA Q +
Sbjct: 118 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSE 167

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 18/128 (14%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS-IF 59
           +G  +VGK+ + I +    F   Y PT+ + F     ++    +L L DTAGQ++Y+ + 
Sbjct: 12  VGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71
Query: 60  PAQY-SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  ++L +S+ S  S+E               I               PIVL
Sbjct: 72  PLSYRGADV--FLLAFSLISKASYE--------------NIHKKWLPELKHYAPGIPIVL 115
Query: 119 VGNKKDLH 126
           VG K DL 
Sbjct: 116 VGTKLDLR 123

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 29/170 (17%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G    GK++L   F    F ++Y PT+   +  +  ++ Q  +L L DT+G   Y ++ 
Sbjct: 29  VGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVR 88
Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
           P  Y  D    ++ + I+  ++ + V      L    G+IQ               ++LV
Sbjct: 89  PLSYP-DSDAVLICFDISRPETLDSV------LKKWKGEIQEFCPNTK--------MLLV 133
Query: 120 GNKKDL------------HMERMISYDEGKRLAESWKAG-FVEASAKQDD 156
           G K DL            H +  +SYD+G  +A+   A  ++E SA Q +
Sbjct: 134 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSE 183

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 17/155 (10%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYD-PTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS+L+  F   Q   +++    E+T+ +   ++ ++  L + D   Q +   +
Sbjct: 8   VGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW 67
Query: 60  PAQYSMDIH-GYVLVYSITSHKSFEVVQILYDKLLDM-TGKIQNXXXXXXXXXXXXXPIV 117
              + +     +++V+S+T  +SF  V    + LL +  G+  +             P++
Sbjct: 68  LQDHCLQTGDAFLIVFSVTDRRSFSKVP---ETLLRLRAGRPHHDL-----------PVI 113
Query: 118 LVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
           LVGNK DL   R +S +EG+ LA +     +E SA
Sbjct: 114 LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSA 148

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 18/128 (14%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS-IF 59
           +G  +VGK+ + I +    F   Y PT+ + F     ++    +L L DTAGQ++Y+ + 
Sbjct: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLR 71
Query: 60  PAQY-SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  ++L +S+ S  S+E V   +   L                     PI+L
Sbjct: 72  PLSYRGADV--FILAFSLISKASYENVAKKWIPELRHYAP--------------GVPIIL 115
Query: 119 VGNKKDLH 126
           VG K DL 
Sbjct: 116 VGTKLDLR 123

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 46/184 (25%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAGQ++Y  + 
Sbjct: 11  VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 70
Query: 60  PAQYSMDI---HG---------------YVLVYSITSHKSFEVVQILYDKLLDMTGKIQN 101
           P  Y   +   +G               +++ +S+ S  SFE V+  +            
Sbjct: 71  PLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKW------------ 118
Query: 102 XXXXXXXXXXXXXPIVLVGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFV 148
                        PI+LVG K DL      +E++       I+Y +G  +A+   A  ++
Sbjct: 119 --YPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 176
Query: 149 EASA 152
           E SA
Sbjct: 177 ECSA 180

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAG ++Y  + 
Sbjct: 161 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR 220
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SF  V+  +                         PI+L
Sbjct: 221 PLSYPQTDV--FLICFSLVSPASFHHVRAKW--------------YPEVRHHCPNTPIIL 264
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  +A+   A  ++E SA
Sbjct: 265 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAG ++Y  + 
Sbjct: 161 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR 220
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SF  V+  +                         PI+L
Sbjct: 221 PLSYPQTDV--FLICFSLVSPASFHHVRAKW--------------YPEVRHHCPNTPIIL 264
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  +A+   A  ++E SA
Sbjct: 265 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAG ++Y  + 
Sbjct: 161 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR 220
Query: 60  PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
           P  Y   D+  +++ +S+ S  SF  V+  +                         PI+L
Sbjct: 221 PLSYPQTDV--FLICFSLVSPASFHHVRAKW--------------YPEVRHHCPNTPIIL 264
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
           VG K DL      +E++       I+Y +G  +A+   A  ++E SA
Sbjct: 265 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 19/161 (11%)
Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV--KTTRMNNQDYDLKLVDTAGQDEYSI 58
           +G  + GK+SL+  F    F   Y  TI   F   + T   N +  L++ D  GQ     
Sbjct: 12  LGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK 71
Query: 59  FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIV- 117
              +Y     G +LVY IT+++SFE ++  Y  +  ++ + +              P+V 
Sbjct: 72  MLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESET------------QPLVA 119
Query: 118 LVGNKKDLHMERMISYDEGKRLAE--SWKAGFVEASAKQDD 156
           LVGNK DL   R I  ++  R  +   + + FV  SAK  D
Sbjct: 120 LVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFV--SAKTGD 158

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	157
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	9e-70
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	1e-69
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-69
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	8e-69
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	1e-68
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	7e-68
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	2e-67
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-67
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	3e-67
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	8e-67
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-66
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	3e-66
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	8e-66
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-65
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	3e-65
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	6e-65
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	1e-61
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-61
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	6e-54
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-48
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-47
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-46
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	4e-40
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-39
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	2e-32
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	4e-32
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	5e-32
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	7e-32
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-31
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	3e-31
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	5e-31
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	5e-31
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	2e-30
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	2e-29
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	5e-29
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	6e-29
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-28
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-28
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	2e-28
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	2e-28
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	2e-28
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	2e-28
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	3e-28
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	3e-28
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	4e-28
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	6e-28
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	7e-28
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	7e-28
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	9e-28
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	9e-28
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-27
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-27
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-27
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-27
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-27
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-27
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-27
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	2e-27
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	3e-27
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	4e-27
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	4e-27
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	6e-27
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-26
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-26
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	2e-26
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	2e-26
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-26
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	3e-26
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	3e-26
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	6e-25
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	9e-25
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	3e-24
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	5e-24
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	7e-24
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	1e-23
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	3e-23
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	3e-23
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	6e-23
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	9e-23
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	4e-22
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	4e-22
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	1e-21
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	2e-19
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-17
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	9e-16
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	5e-04
2fh5_B	214	SR-beta, signal recognition particle receptor beta	9e-04

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  208 bits (531), Expect = 9e-70
 Identities = 79/154 (51%), Positives = 106/154 (68%), Gaps = 13/154 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +GYR VGK+SL+ QFV+G+F + YDPT+ENT+ K   +   ++ L LVDTAGQDEYSI P
Sbjct: 30  LGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILP 89

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             + + +HGYVLVYS+TS  SF+V++ LY KL +  GK             + VP+VLVG
Sbjct: 90  YSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGK-------------TRVPVVLVG 136

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           NK DL  ER +   EGK+LAESW A F+E+SA++
Sbjct: 137 NKADLSPEREVQAVEGKKLAESWGATFMESSARE 170

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  207 bits (529), Expect = 1e-69
 Identities = 103/154 (66%), Positives = 125/154 (81%), Gaps = 13/154 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +GYRSVGKSSL+IQFV+GQFVDSYDPTIENTF K   +N Q+Y L+LVDTAGQDEYSIFP
Sbjct: 12  LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 71

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             YS+DI+GY+LVYS+TS KSFEV+++++ KLLDM GK               +PI+LVG
Sbjct: 72  QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-------------VQIPIMLVG 118

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           NKKDLHMER+ISY+EGK LAESW A F+E+SAK+
Sbjct: 119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKE 152

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  206 bits (526), Expect = 2e-69
 Identities = 52/154 (33%), Positives = 84/154 (54%), Gaps = 12/154 (7%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
            G   VGKSSL ++FV G F +SY PT+E+T+ +    +     L++ DT G  ++    
Sbjct: 9   FGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQ 68

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
                  H ++LVYSITS +S E ++ +Y+++ ++ G +++            +PI+LVG
Sbjct: 69  RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES------------IPIMLVG 116

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           NK D    R +   E + LA +WK  F+E SAK 
Sbjct: 117 NKCDESPSREVQSSEAEALARTWKCAFMETSAKL 150

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  204 bits (522), Expect = 8e-69
 Identities = 55/154 (35%), Positives = 92/154 (59%), Gaps = 13/154 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QFV G F++ YDPTIE+ + K   +++    L+++DTAG ++++   
Sbjct: 9   LGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMR 68

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y  +  G++LVYS+ + +SF+ ++ + D+++ +                  VP++LVG
Sbjct: 69  DLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-------------EKVPVILVG 115

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           NK DL  ER +S  EG+ LAE W   F+E SAK 
Sbjct: 116 NKVDLESEREVSSSEGRALAEEWGCPFMETSAKS 149

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  204 bits (521), Expect = 1e-68
 Identities = 49/154 (31%), Positives = 85/154 (55%), Gaps = 13/154 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QF+  +FV+ Y+PT  +++ K   ++ ++  + ++DTAGQ++Y+   
Sbjct: 10  VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIR 69

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y     G++ V+SIT  +SF       +++L +                 +VP +LVG
Sbjct: 70  DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-------------ENVPFLLVG 116

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           NK DL  +R +S +E K  A+ W   +VE SAK 
Sbjct: 117 NKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKT 150

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  203 bits (518), Expect = 7e-68
 Identities = 50/154 (32%), Positives = 85/154 (55%), Gaps = 13/154 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QF+  +FV+ Y+PT  +++ K   ++ ++  + ++DTAGQ++Y+   
Sbjct: 24  VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIR 83

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y     G++ V+SIT  +SF       +++L +                 +VP +LVG
Sbjct: 84  DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-------------ENVPFLLVG 130

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           NK DL  +R +S +E K  AE W   +VE SAK 
Sbjct: 131 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKT 164

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  202 bits (516), Expect = 2e-67
 Identities = 50/154 (32%), Positives = 85/154 (55%), Gaps = 13/154 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QF+  +FV+ Y+PT  +++ K   ++ ++  + ++DTAGQ++Y+   
Sbjct: 20  VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIR 79

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y     G++ V+SIT  +SF       +++L +                 +VP +LVG
Sbjct: 80  DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-------------ENVPFLLVG 126

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           NK DL  +R +S +E K  AE W   +VE SAK 
Sbjct: 127 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKT 160

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  201 bits (514), Expect = 2e-67
 Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 13/154 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L+IQF+   FV  YDPTIE+++ K   ++     L ++DTAGQ+E+    
Sbjct: 15  VGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMR 74

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QY    HG++LV++I   +SF  V  L+ ++L +  +                P+VLVG
Sbjct: 75  EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-------------DDFPVVLVG 121

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           NK DL  +R +   E      S    + EASAK 
Sbjct: 122 NKADLESQRQVPRSEASAFGASHHVAYFEASAKL 155

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  201 bits (513), Expect = 3e-67
 Identities = 59/154 (38%), Positives = 89/154 (57%), Gaps = 13/154 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L+IQF    FVD YDPTIE++++K T ++NQ   L ++DTAGQ+E+S   
Sbjct: 24  VGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMR 83

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QY     G+++VYS+T   SFE V   +  +L +  +              S P++LV 
Sbjct: 84  EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-------------ESFPMILVA 130

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           NK DL   R ++ D+GK +A  +   ++E SAK 
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKD 164

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  199 bits (509), Expect = 8e-67
 Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 14/155 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QFV G FV+ YDPTIE+++ K   ++ Q   L+++DTAG ++++   
Sbjct: 9   LGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMR 68

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y  +  G+ LVYSIT+  +F  +Q L +++L +                  VP++LVG
Sbjct: 69  DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-------------EDVPMILVG 115

Query: 121 NKKDLHMERMISYDEGKRLAESW-KAGFVEASAKQ 154
           NK DL  ER++  ++G+ LA  W    F+E+SAK 
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKS 150

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  199 bits (509), Expect = 2e-66
 Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 13/154 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
            G   VGKSSL ++FV G F D+Y PTIE+T+ +    +     L++ DT G  ++    
Sbjct: 14  FGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQ 73

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
                  H ++LV+S+TS +S E +  +Y  ++ + G +++            +P++LVG
Sbjct: 74  RLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED------------IPVMLVG 121

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           NK D   +R +   E + +A+ WK  F+E SAK 
Sbjct: 122 NKCDET-QREVDTREAQAVAQEWKCAFMETSAKM 154

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  198 bits (507), Expect = 3e-66
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 12/155 (7%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G R  GKS+L+++F+  +F+  YDP +E+T+     +++Q   L+++DTA  D      
Sbjct: 27  LGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNCE 86

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            +Y    H +++VYS+ S +SF+      + L     + Q            S+P +L+G
Sbjct: 87  -RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQ-----------RSIPALLLG 134

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           NK D+   R ++  EG  LA  +   F E SA  D
Sbjct: 135 NKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLD 169

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  197 bits (504), Expect = 8e-66
 Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 14/154 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS   
Sbjct: 10  VGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 69

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QY     G++ V++I + KSFE +    +++  +                  VP+VLVG
Sbjct: 70  DQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS-------------EDVPMVLVG 116

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           NK DL   R +   + + LA S+   F+E SAK 
Sbjct: 117 NKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKT 149

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  197 bits (502), Expect = 2e-65
 Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 14/154 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS   
Sbjct: 27  VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 86

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QY     G++ V++I + KSF  + +  +++  +                  VP+VLVG
Sbjct: 87  DQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-------------DDVPMVLVG 133

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           NK DL   R +   +   LA+S+   F+E SAK 
Sbjct: 134 NKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKT 166

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  195 bits (499), Expect = 3e-65
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 14/154 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L+IQ +   FVD  DPTIE+++ K   ++ +   L ++DTAGQ+EYS   
Sbjct: 9   VGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QY     G++ V++I + KSFE +    +++  +                  VP+VLVG
Sbjct: 69  DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-------------DDVPMVLVG 115

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           NK DL   R +   + + LA S+   ++E SAK 
Sbjct: 116 NKSDL-AARTVESRQAQDLARSYGIPYIETSAKT 148

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  195 bits (499), Expect = 6e-65
 Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 14/155 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
            G   VGKS+L ++F+  +F+  YDPT+E+T+     ++++   ++++DTAGQ++  I  
Sbjct: 34  FGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDT-IQR 92

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             +     G+VLVY IT   SFE V  L + L ++                 +V ++LVG
Sbjct: 93  EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-------------KNVTLILVG 139

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           NK DL   R +S +EG++LA      F E SA   
Sbjct: 140 NKADLDHSRQVSTEEGEKLATELACAFYECSACTG 174

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  186 bits (475), Expect = 1e-61
 Identities = 47/156 (30%), Positives = 69/156 (44%), Gaps = 15/156 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD--EYSI 58
           +G   VGK+SL+  F   Q  D ++   E+ + +T  ++ +D  L +VDT   +  + S 
Sbjct: 10  LGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSW 69

Query: 59  FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
                      YV+VYSI    SFE    L  +L                     VPI+L
Sbjct: 70  SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQA-------------DHVPIIL 116

Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           VGNK DL   R +S +EG+  A  +   F+E SA  
Sbjct: 117 VGNKADLARCREVSVEEGRACAVVFDCKFIETSATL 152

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  186 bits (474), Expect = 1e-61
 Identities = 45/154 (29%), Positives = 65/154 (42%), Gaps = 14/154 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L+  F  G           +T+ ++  ++ ++  L + D   QD     P
Sbjct: 8   LGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLP 66

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
                    YV+VYS+T   SFE    L  +L                     VPI+LVG
Sbjct: 67  GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT-------------DDVPIILVG 113

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           NK DL   R +S DEG+  A  +   F+E SA  
Sbjct: 114 NKSDLVRSREVSVDEGRACAVVFDCKFIETSAAL 147

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  167 bits (426), Expect = 6e-54
 Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 22/158 (13%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G  S GKS+L  +++ G +V    P     F K   ++ Q Y L + D  G  E     
Sbjct: 26  VGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPEL---- 80

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            Q++  +   V V+S+    SF+ V   + +L                   S VP+VLVG
Sbjct: 81  -QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNA-------------SEVPMVLVG 126

Query: 121 NKKDLHME--RMISYDEGKRLAESWK-AGFVEASAKQD 155
            +  +     R+I     ++L+   K   + E  A   
Sbjct: 127 TQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYG 164

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  154 bits (391), Expect = 2e-48
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 15/155 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTI-ENTFVKTTRMNNQDYDLKLVDTAGQDEY-SI 58
           +G   VGKS+L+  F   Q   +++P   E+T+ +   ++ ++  L + D   Q +    
Sbjct: 29  VGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGW 88

Query: 59  FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
                      +++V+S+T  +SF  V     +L                     +P++L
Sbjct: 89  LRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-------------HDLPVIL 135

Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           VGNK DL   R +S +EG+ LA +     +E SA 
Sbjct: 136 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAA 170

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  151 bits (383), Expect = 1e-47
 Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 15/155 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPT-IENTFVKTTRMNNQDYDLKLVDTAGQDEYS-I 58
           +G   VGKS+L+  F   Q   +++    E+T+ +   ++ ++  L + D   Q +    
Sbjct: 8   VGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW 67

Query: 59  FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
                      +++V+S+T  +SF  V     +L                     +P++L
Sbjct: 68  LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-------------HDLPVIL 114

Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           VGNK DL   R +S +EG+ LA +     +E SA 
Sbjct: 115 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAA 149

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  149 bits (377), Expect = 3e-46
 Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 20/159 (12%)

Query: 1   MGYRSVGKSSLSIQFVDGQ--FVDSYDPTIENTFVKTTRMNNQDYDLKLVD---TAGQDE 55
           +G + VGKS+L+  F           +   E+T+ +T  ++ +   + L+D     G++E
Sbjct: 43  IGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENE 102

Query: 56  YSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP 115
           +             Y++VYSIT   SFE    L  +L                     +P
Sbjct: 103 WLH--DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-------------EDIP 147

Query: 116 IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           I+LVGNK DL   R +S  EG+  A  +   F+E SA  
Sbjct: 148 IILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAV 186

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  132 bits (335), Expect = 4e-40
 Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 20/159 (12%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYD--PTIENTFVKTTRMNNQDYDLKLV---DTAGQDE 55
           +G + VGKS+L+  F         D     E+T+ +T  ++ +   + L+   +  G++E
Sbjct: 12  IGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENE 71

Query: 56  YSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP 115
           +             Y++VYSIT   SFE    L  +L                     +P
Sbjct: 72  WLH--DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-------------EDIP 116

Query: 116 IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           I+LVGNK DL   R +S  EG+  A  +   F+E SA  
Sbjct: 117 IILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAV 155

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  130 bits (329), Expect = 2e-39
 Identities = 28/156 (17%), Positives = 63/156 (40%), Gaps = 16/156 (10%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G    GKSSL  +F+ G +    + T    + K   ++ Q + + + + AG  +     
Sbjct: 13  LGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA---- 67

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            ++S      + V+S+    SF+ V  L+ +L  + G+ +            ++ +V   
Sbjct: 68  -KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGG---------LALALVGTQ 117

Query: 121 NKKDLHMERMISYDEGKRL-AESWKAGFVEASAKQD 155
           ++      R++     + L A+  +  + E  A   
Sbjct: 118 DRISASSPRVVGDARARALXADMKRCSYYETXATYG 153

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  113 bits (285), Expect = 2e-32
 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 23/159 (14%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYS 64
           +VGK+ + I +   +F   Y PT+ + F     ++ Q  +L L DTAGQ++YS       
Sbjct: 19  AVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSY 78

Query: 65  MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD 124
                +VL +S+ S  S+E V   +        +++  +         +VPIVLVG K D
Sbjct: 79  RGADIFVLAFSLISKASYENVLKKW------MPELRRFA--------PNVPIVLVGTKLD 124

Query: 125 L--------HMERMISYDEGKRLAESWKA-GFVEASAKQ 154
           L            +I+  +G+ L +   A  ++E S+K 
Sbjct: 125 LRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT 163

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  112 bits (283), Expect = 4e-32
 Identities = 54/154 (35%), Positives = 79/154 (51%), Gaps = 17/154 (11%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           G +SVGK+SL  +F+   F ++Y  TI   F  KT  + ++   L+L DTAG + + S+ 
Sbjct: 23  GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLI 82

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
           P+    D    V+VY IT+  SF+      D +    G              S V I+LV
Sbjct: 83  PSYIR-DSTVAVVVYDITNVNSFQQTTKWIDDVRTERG--------------SDVIIMLV 127

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R +S +EG+R A+     F+E SAK
Sbjct: 128 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 161

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  111 bits (280), Expect = 5e-32
 Identities = 49/154 (31%), Positives = 73/154 (47%), Gaps = 18/154 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
           +VGKSS+  ++  G F   Y  TI   F  +  ++N++D  L L DTAGQ+E+ +I  A 
Sbjct: 15  AVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAY 74

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y       VLV+S T  +SFE +    +K++                    +P  LV NK
Sbjct: 75  YR-GAQACVLVFSTTDRESFEAISSWREKVVAEV---------------GDIPTALVQNK 118

Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
            DL  +  I  +E + LA+  K  F   S K+D 
Sbjct: 119 IDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDL 152

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  111 bits (279), Expect = 7e-32
 Identities = 55/154 (35%), Positives = 79/154 (51%), Gaps = 17/154 (11%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           G +SVGK+SL  +F+   F ++Y  TI   F  KT  + ++   L+L DTAGQ+ + S+ 
Sbjct: 21  GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 80

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
           P+    D    V+VY IT+  SF       D +    G              S V I+LV
Sbjct: 81  PSYIR-DSTVAVVVYDITNTNSFHQTSKWIDDVRTERG--------------SDVIIMLV 125

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R +S +EG+R A+     F+E SAK
Sbjct: 126 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 159

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  110 bits (277), Expect = 1e-31
 Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 17/155 (10%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           G   VGK+SL +++ + +F D +  T+  +F  K   +  +  +L + DTAGQ+ + ++ 
Sbjct: 13  GEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 72

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
           P  Y  D +G +LVY IT   SF+ V+    +L  M G              + + + +V
Sbjct: 73  PIYYR-DSNGAILVYDITDEDSFQKVKNWVKELRKMLG--------------NEICLCIV 117

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           GNK DL  ER +S  E +  AES  A     SAKQ
Sbjct: 118 GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQ 152

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  109 bits (274), Expect = 3e-31
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 17/154 (11%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           G   VGKSS+  +FV+  F  + +PTI  +F  KT +  N+ +   + DTAG + + ++ 
Sbjct: 13  GDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALA 72

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
           P  Y       ++VY IT  ++F  ++    +L                    S+ + + 
Sbjct: 73  PMYYR-GSAAAIIVYDITKEETFSTLKNWVRELRQHGP--------------PSIVVAIA 117

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL   R +   + K  A+S  A FVE SAK
Sbjct: 118 GNKCDLTDVREVMERDAKDYADSIHAIFVETSAK 151

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  109 bits (275), Expect = 5e-31
 Identities = 48/155 (30%), Positives = 69/155 (44%), Gaps = 17/155 (10%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           G   VGKSS+  +FV   F  +  PTI  +F  KT    N+ +   + DTAGQ+ + S+ 
Sbjct: 30  GDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLA 89

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
           P  Y       V+VY IT   SF  ++    +L +                  ++ + + 
Sbjct: 90  PMYYR-GSAAAVIVYDITKQDSFYTLKKWVKELKEHGP--------------ENIVMAIA 134

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           GNK DL   R +   + K  AES  A  VE SAK 
Sbjct: 135 GNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKN 169

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  108 bits (273), Expect = 5e-31
 Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 17/154 (11%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           G  +VGKSSL ++FV GQF +  + TI   F  +T  +++     ++ DTAGQ+ Y S+ 
Sbjct: 13  GESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
           P  Y       ++VY IT+ +SF   +    +L                    ++ I L 
Sbjct: 73  PMYYR-GAQAAIVVYDITNEESFARAKNWVKELQRQAS--------------PNIVIALS 117

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R + + E +  A+     F+E SAK
Sbjct: 118 GNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 151

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  107 bits (270), Expect = 2e-30
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 17/154 (11%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           G    GKSSL ++FV  QFV+  + TI   F  +T  +N+     ++ DTAGQ+ Y S+ 
Sbjct: 19  GDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA 78

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
           P  Y       ++V+ +T+  SFE  +    +L                    ++ + L 
Sbjct: 79  PMYYR-GAAAAIIVFDVTNQASFERAKKWVQELQAQGN--------------PNMVMALA 123

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL   R ++ ++ +  A+     F+E SAK
Sbjct: 124 GNKSDLLDARKVTAEDAQTYAQENGLFFMETSAK 157

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  105 bits (264), Expect = 2e-29
 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 19/153 (12%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQY 63
           +VGK+ L + F  G+   +Y PT+   F    +  N+++ L L DTAGQ+EY  + P  Y
Sbjct: 33  AVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSY 92

Query: 64  SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKK 123
           + D    +L +++ +  SF+ +   +                       +   VLVG K 
Sbjct: 93  A-DSDVVLLCFAVNNRTSFDNISTKW---------EPEIKHYID-----TAKTVLVGLKV 137

Query: 124 DL--HMERMISYDEGKRLAESWKA-GFVEASAK 153
           DL       ++  EG  L +      ++EAS+ 
Sbjct: 138 DLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV 170

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  103 bits (260), Expect = 5e-29
 Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 17/156 (10%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLV--DTAGQDEY-SIFP 60
           + GK+SL+  F    F   Y  TI   F ++   +     ++ L   D  GQ     +  
Sbjct: 16  ASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGN-LNVTLQIWDIGGQTIGGKMLD 74

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
                   G +LVY IT+++SFE ++       D    ++  S +S T  +    + LVG
Sbjct: 75  KYIY-GAQGVLLVYDITNYQSFENLE-------DWYTVVKKVSEESETQPL----VALVG 122

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK DL   R I  ++  R  +         SAK  D
Sbjct: 123 NKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGD 158

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  103 bits (259), Expect = 6e-29
 Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 17/151 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
            VGKS L  QF + +F+     TI   F  +   ++ Q   L++ DTAGQ+ + ++  + 
Sbjct: 25  GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSY 84

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y     G ++VY IT   ++  +        ++T                +  I+L+GNK
Sbjct: 85  YR-GAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--------------NTVIILIGNK 129

Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
            DL  +R ++Y+E K+ AE     F+EASAK
Sbjct: 130 ADLEAQRDVTYEEAKQFAEENGLLFLEASAK 160

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  103 bits (259), Expect = 1e-28
 Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 17/154 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
            VGKSSL ++F D  F      TI   F VKT  ++     L + DTAGQ+ + ++ P+ 
Sbjct: 25  GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 84

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y     G +LVY +T   +F  +    ++L     +             + +  +LVGNK
Sbjct: 85  YR-GAQGVILVYDVTRRDTFVKLDNWLNELETYCTR-------------NDIVNMLVGNK 130

Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
            D    R +  +EG + A      F+EASAK  D
Sbjct: 131 IDKE-NREVDRNEGLKFARKHSMLFIEASAKTCD 163

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  103 bits (258), Expect = 2e-28
 Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 17/151 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
             GKS L  QF++ +F    + TI   F  +   +  +   L++ DTAGQ+ + S+  + 
Sbjct: 35  GTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSY 94

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y     G +LVY ITS +++  +         +                 ++ ++L GNK
Sbjct: 95  YR-GAAGALLVYDITSRETYNSLAAWLTDARTL--------------ASPNIVVILCGNK 139

Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           KDL  ER +++ E  R A+  +  F+E SA 
Sbjct: 140 KDLDPEREVTFLEASRFAQENELMFLETSAL 170

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  103 bits (258), Expect = 2e-28
 Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 17/154 (11%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           G   VGKS L ++F D  + + Y  TI   F +KT  ++ +   L++ DTAGQ+ + +I 
Sbjct: 15  GNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT 74

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
            + Y    HG ++VY +T  +SF  V++   ++                   S+V  +LV
Sbjct: 75  SSYYR-GSHGIIIVYDVTDQESFNGVKMWLQEIDRY--------------ATSTVLKLLV 119

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL  +R++ YD  K  A++ K  F+E SA 
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSAL 153

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  102 bits (257), Expect = 2e-28
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 17/156 (10%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           G   VGKS L ++F D  + +SY  TI   F ++T  ++ +   L++ DTAGQ+ + +I 
Sbjct: 23  GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 82

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
            + Y    HG ++VY +T  +SF  V+    ++                    +V  +LV
Sbjct: 83  SSYYR-GAHGIIVVYDVTDQESFNNVKQWLQEIDRY--------------ASENVNKLLV 127

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           GNK DL  ++++ Y   K  A+S    F+E SAK  
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNA 163

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  102 bits (256), Expect = 2e-28
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 17/151 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
             GKS L  QF++ +F D  + TI   F  K   +  +   L++ DTAGQ+ + S+  + 
Sbjct: 20  GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSY 79

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y     G +LVY ITS +++  +         +  +              ++ I+L GNK
Sbjct: 80  YR-GAAGALLVYDITSRETYNALTNWLTDARMLASQ--------------NIVIILCGNK 124

Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           KDL  +R +++ E  R A+  +  F+E SA 
Sbjct: 125 KDLDADREVTFLEASRFAQENELMFLETSAL 155

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  102 bits (257), Expect = 2e-28
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 17/156 (10%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           G   VGKS L ++F D  + +SY  TI   F ++T  ++ +   L++ DTAGQ+ + +I 
Sbjct: 40  GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 99

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
            + Y    HG ++VY +T  +SF  V+    ++     +              +V  +LV
Sbjct: 100 SSYYR-GAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--------------NVNKLLV 144

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           GNK DL  ++++ Y   K  A+S    F+E SAK  
Sbjct: 145 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNA 180

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  102 bits (257), Expect = 3e-28
 Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 17/154 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
            VGK+ L  +F  G F      TI   F +KT  +N +   L++ DTAGQ+ + SI  + 
Sbjct: 36  GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSY 95

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y    +  +L Y IT  +SF  +     ++                   + V  VLVGNK
Sbjct: 96  YR-SANALILTYDITCEESFRCLPEWLREIEQY--------------ASNKVITVLVGNK 140

Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
            DL   R +S    +  +E+    ++E SAK+ D
Sbjct: 141 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESD 174

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  102 bits (256), Expect = 3e-28
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 17/154 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY--SIFPA 61
           +VGK+ L+ +F  G+F D  + TI   F  +   ++ +   ++L DTAGQ+ +  S+   
Sbjct: 30  NVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQH 89

Query: 62  QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121
            Y  ++H  V VY +T+  SF  +    ++                    + +P +LVGN
Sbjct: 90  YYR-NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-------------NDIPRILVGN 135

Query: 122 KKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
           K DL     +  D  ++ A++      E SAK  
Sbjct: 136 KCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNP 169

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  102 bits (256), Expect = 4e-28
 Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 18/152 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLV--DTAGQDEY-SIFPA 61
            VGK++   + +DG+F  +Y+ T+       T +++Q   +K    DTAGQ++   +   
Sbjct: 21  GVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDV 80

Query: 62  QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121
            Y +   G +L + +TS  + + +     +   +                +  PIV+  N
Sbjct: 81  YY-IGASGAILFFDVTSRITCQNLARWVKEFQAV--------------VGNEAPIVVCAN 125

Query: 122 KKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           K D+   + IS      + +     + E SAK
Sbjct: 126 KIDIKNRQKISKKLVMEVLKGKNYEYFEISAK 157

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  101 bits (254), Expect = 6e-28
 Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 17/151 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
           SVGK+S   ++ D  F  ++  T+   F VKT   +++   L++ DTAGQ+ Y +I  A 
Sbjct: 32  SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAY 91

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y     G++L+Y I + +SF  VQ    ++   +                +  ++LVGNK
Sbjct: 92  YR-GAMGFLLMYDIANQESFAAVQDWATQIKTYSWD--------------NAQVILVGNK 136

Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
            DL  ER++  ++G+RLA+     F EASAK
Sbjct: 137 CDLEDERVVPAEDGRRLADDLGFEFFEASAK 167

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  101 bits (253), Expect = 7e-28
 Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 17/151 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
            VGKS+L  +F   +F      TI   F  ++ +++ +    ++ DTAG + Y +I  A 
Sbjct: 39  GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 98

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y     G +LVY I  H ++E V+    +L D                 S++ I+LVGNK
Sbjct: 99  YR-GAVGALLVYDIAKHLTYENVERWLKELRDH--------------ADSNIVIMLVGNK 143

Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
            DL   R +  DE +  AE     F+E SA 
Sbjct: 144 SDLRHLRAVPTDEARAFAEKNGLSFIETSAL 174

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  101 bits (254), Expect = 7e-28
 Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 17/151 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
            VGKS+L  +F   +F      TI   F  ++ +++ +    ++ DTAGQ+ Y  I  A 
Sbjct: 15  GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAY 74

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y     G +LVY I  H ++E V+    +L D                 S++ I+LVGNK
Sbjct: 75  YR-GAVGALLVYDIAKHLTYENVERWLKELRDH--------------ADSNIVIMLVGNK 119

Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
            DL   R +  DE +  AE     F+E SA 
Sbjct: 120 SDLRHLRAVPTDEARAFAEKNNLSFIETSAL 150

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  101 bits (253), Expect = 9e-28
 Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 17/151 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
            VGK++L  +F   +F      TI   F  +T  +       ++ DTAG + Y +I  A 
Sbjct: 35  GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAY 94

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y     G +LV+ +T H+++ VV+    +L D                  ++ ++LVGNK
Sbjct: 95  YR-GAVGALLVFDLTKHQTYAVVERWLKELYDHAEA--------------TIVVMLVGNK 139

Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
            DL   R +  +E +  AE+    F+E SA 
Sbjct: 140 SDLSQAREVPTEEARMFAENNGLLFLETSAL 170

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  100 bits (252), Expect = 9e-28
 Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 17/151 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
            VGK+ +  +F +  F  ++  TI   F ++T  ++ +   L++ DTAGQ+ + +I  A 
Sbjct: 18  GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 77

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y     G +LVY IT+ KSF+ ++     + +                 + V  +++GNK
Sbjct: 78  YR-GAMGIMLVYDITNEKSFDNIRNWIRNIEEH--------------ASADVEKMILGNK 122

Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
            D++ +R +S + G++LA  +   F+E SAK
Sbjct: 123 CDVNDKRQVSKERGEKLALDYGIKFMETSAK 153

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  100 bits (252), Expect = 1e-27
 Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 18/151 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
            VGKSSL ++F D  F  SY  TI   F ++T  +N +   L++ DTAGQ+ + +I    
Sbjct: 19  GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTY 78

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y    HG ++VY +TS +SF  V+           +I  +           V  +LVGNK
Sbjct: 79  YR-GTHGVIVVYDVTSAESFVNVK-------RWLHEINQNC--------DDVCRILVGNK 122

Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
            D    +++  ++  + A        E SAK
Sbjct: 123 NDDPERKVVETEDAYKFAGQMGIQLFETSAK 153

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  100 bits (252), Expect = 1e-27
 Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 17/151 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
            VGKS L +QF D +F   +D TI   F  +   ++ +   L++ DTAGQ+ + SI  + 
Sbjct: 31  GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY 90

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y     G +LVY IT  ++F  +    +                     S++ I+L+GNK
Sbjct: 91  YR-GAAGALLVYDITRRETFNHLTSWLEDARQH--------------SSSNMVIMLIGNK 135

Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
            DL   R +  +EG+  A      F+E SAK
Sbjct: 136 SDLESRRDVKREEGEAFAREHGLIFMETSAK 166

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  100 bits (252), Expect = 1e-27
 Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 17/151 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
           SVGK+S   ++ D  F  ++  T+   F VKT   + +   L++ DTAGQ+ Y +I  A 
Sbjct: 33  SVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAY 92

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y     G++L+Y IT+ +SF  VQ    ++   +                +  ++LVGNK
Sbjct: 93  YR-GAMGFILMYDITNEESFNAVQDWATQIKTYSWD--------------NAQVILVGNK 137

Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
            D+  ER++  ++G+ LAE     F EASAK
Sbjct: 138 CDMEEERVVPTEKGQLLAEQLGFDFFEASAK 168

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  100 bits (252), Expect = 1e-27
 Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 23/157 (14%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
           +VGKSS  ++    +F ++   T+   F +KT  ++ +   L+L DTAGQ+ + SI  + 
Sbjct: 38  AVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSY 97

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           +     G +L+Y +T  KSF  ++   D + D   +              +VPI+LVGNK
Sbjct: 98  FR-KADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE--------------TVPIMLVGNK 142

Query: 123 KDLH------MERMISYDEGKRLAESWKAGFVEASAK 153
            D+        ++ +    G++LA ++ A F E SAK
Sbjct: 143 ADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAK 179

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  100 bits (252), Expect = 1e-27
 Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 17/151 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
           SVGK+S   ++ D  F  ++  T+   F VKT   N++   L++ DTAG + Y +I  A 
Sbjct: 18  SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAY 77

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y     G++L+Y IT+ +SF  VQ    ++   +                +  ++LVGNK
Sbjct: 78  YR-GAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--------------NAQVLLVGNK 122

Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
            D+  ER++S + G++LA+     F EASAK
Sbjct: 123 CDMEDERVVSSERGRQLADHLGFEFFEASAK 153

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  100 bits (252), Expect = 1e-27
 Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 13/153 (8%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
            VGK+SL  Q+V+ +F + Y  TI   F  K   ++++   +++ DTAGQ+ + S+  A 
Sbjct: 18  GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAF 77

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y       VLV+ +T+  +F+ +    D+ L        +S + P     + P V++GNK
Sbjct: 78  YR-GADCCVLVFDVTAPNTFKTLDSWRDEFL------IQASPRDP----ENFPFVVLGNK 126

Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
            DL   ++ +              + E SAK+ 
Sbjct: 127 IDLENRQVATKRAQAWCYSKNNIPYFETSAKEA 159

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =   99 bits (250), Expect = 1e-27
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 18/154 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
            VGKS L ++FV+ +F  S+  TI   F +KT  +N +   L++ DTAGQ+ + +I  A 
Sbjct: 13  GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY 72

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y     G +LVY IT  ++F  ++  +  + +                     ++LVGNK
Sbjct: 73  YR-GAMGIILVYDITDERTFTNIKQWFKTVNEHAND--------------EAQLLLVGNK 117

Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
            D+   R+++ D+G+ LA+     F+E+SAK DD
Sbjct: 118 SDME-TRVVTADQGEALAKELGIPFIESSAKNDD 150

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 99.9 bits (250), Expect = 2e-27
 Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 15/155 (9%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
            VGKSSL  ++V  +F      TI   F  K   ++     +++ DTAGQ+ + S+    
Sbjct: 17  GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPF 76

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y       +L +S+   +SF+ +     + +        + VK P     S P V++GNK
Sbjct: 77  YR-GSDCCLLTFSVDDSQSFQNLSNWKKEFI------YYADVKEP----ESFPFVILGNK 125

Query: 123 KDLHMERMISYDEGKRLAES-WKAGFVEASAKQDD 156
            D+  ER +S +E +          + E SAK   
Sbjct: 126 IDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDAT 159

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 99.6 bits (249), Expect = 3e-27
 Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 18/152 (11%)

Query: 5   SVGKSSLSIQFVDGQFV-DSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPA 61
            VGK+ L ++F DG F+  ++  T+   F  K   ++     L++ DTAGQ+ + S+  A
Sbjct: 20  GVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHA 79

Query: 62  QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121
            Y  D H  +L+Y +T+  SF+ +Q    ++ +                   V ++L+GN
Sbjct: 80  YY-RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH--------------DVALMLLGN 124

Query: 122 KKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           K D   ER++  ++G++LA+ +   F+E SAK
Sbjct: 125 KVDSAHERVVKREDGEKLAKEYGLPFMETSAK 156

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  100 bits (250), Expect = 4e-27
 Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 17/154 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
            VGKS+L  +F   +F      TI   F  +T  +  +    ++ DTAGQ+ Y +I  A 
Sbjct: 23  GVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAY 82

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y     G ++VY I+   S+E       +L +                  +V + L+GNK
Sbjct: 83  YR-GAVGALIVYDISKSSSYENCNHWLSELREN--------------ADDNVAVGLIGNK 127

Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
            DL   R +  +E K  A+  +  F E SA   +
Sbjct: 128 SDLAHLRAVPTEESKTFAQENQLLFTETSALNSE 161

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 99.4 bits (248), Expect = 4e-27
 Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 27/161 (16%)

Query: 6   VGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM 65
           VGK+SL + +    +   Y PT  + F     ++ +   L+L DTAGQDE+         
Sbjct: 31  VGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYT 90

Query: 66  DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDL 125
           +   ++L +S+ S  SF+ V   +         +       P       PI+LVG + DL
Sbjct: 91  NTDIFLLCFSVVSPSSFQNVSEKW---------VPEIRCHCP-----KAPIILVGTQSDL 136

Query: 126 ------------HMERMISYDEGKRLAESWKA-GFVEASAK 153
                         E+ +  +  K LAE  KA  ++E SA 
Sbjct: 137 REDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSAL 177

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 99.3 bits (248), Expect = 6e-27
 Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 18/155 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
           SVGK+ +  +F  G F +    TI   F +KT  +  +   L++ DTAGQ+ + +I  + 
Sbjct: 39  SVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSY 98

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y    +G +L Y IT   SF  V    + +    G              S++  +L+GNK
Sbjct: 99  YR-SANGAILAYDITKRSSFLSVPHWIEDVRKYAG--------------SNIVQLLIGNK 143

Query: 123 KDLHMERMISYDEGKRLAESWKA-GFVEASAKQDD 156
            DL   R +S  E + LAE +     +E SAK   
Sbjct: 144 SDLSELREVSLAEAQSLAEHYDILCAIETSAKDSS 178

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 98.1 bits (245), Expect = 1e-26
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 18/155 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
            VGK+SL  +F D  F ++   T+   F +KT  +  +   L++ DTAGQ+ + SI  A 
Sbjct: 36  GVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAY 95

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y     G +LVY IT  ++F+ +      +     +                 ++LVGNK
Sbjct: 96  YR-SAKGIILVYDITKKETFDDLPKWMKMIDKYASE--------------DAELLLVGNK 140

Query: 123 KDLHMERMISYDEGKRLAESWKA-GFVEASAKQDD 156
            D   +R I+  +G++ A+      F EASAK + 
Sbjct: 141 LDCETDREITRQQGEKFAQQITGMRFCEASAKDNF 175

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 97.4 bits (243), Expect = 2e-26
 Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 27/164 (16%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS-IFP 60
           G  +VGK+ L I +    F   Y PT+ + F     +N    +L L DTAGQ++Y+ + P
Sbjct: 15  GDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRP 74

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y      ++L +S+ S  S+E V            K     +K        VPIVLVG
Sbjct: 75  LSYR-GADVFILAFSLISKASYENVS-----------KKWIPELK---HYAPGVPIVLVG 119

Query: 121 NKKDL----------HMERMISYDEGKRLAESWKA-GFVEASAK 153
            K DL               I+  +G+ L +   A  ++E S+K
Sbjct: 120 TKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 98.2 bits (245), Expect = 2e-26
 Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 26/161 (16%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLV----------DTAGQ 53
            VGK++   ++ D +F   +  T+   F  K    N Q  +              DTAGQ
Sbjct: 35  GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94

Query: 54  DEY-SIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVS 112
           + + S+  A +  D  G++L++ +TS +SF  V+    +L                +   
Sbjct: 95  ERFRSLTTAFFR-DAMGFLLMFDLTSQQSFLNVRNWMSQLQAN-------------AYCE 140

Query: 113 SVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           +  IVL+GNK DL  +R ++  + + LA+ +   + E SA 
Sbjct: 141 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA 181

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 97.8 bits (244), Expect = 2e-26
 Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 18/151 (11%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
            VGKS L ++FV+ +F  S+  TI   F +KT  +N +   L+L DTAGQ+ + +I  A 
Sbjct: 30  GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 89

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y     G +LVY +T  ++F  ++  +  + +                     ++LVGNK
Sbjct: 90  YR-GAMGIILVYDVTDERTFTNIKQWFKTVNEH--------------ANDEAQLLLVGNK 134

Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
            D+   R+++ D+G+ LA+     F+E+SAK
Sbjct: 135 SDME-TRVVTADQGEALAKELGIPFIESSAK 164

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 96.9 bits (242), Expect = 2e-26
 Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 16/156 (10%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLV--DTAGQDEY-SIFPA 61
            VGK+SL  ++V+ ++   Y  TI   F+      + D    +   DTAGQ+ + S+  A
Sbjct: 18  GVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVA 77

Query: 62  QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121
            Y       VLVY +T+  SFE ++   D+ L       +++V SP     + P V++GN
Sbjct: 78  FYR-GADCCVLVYDVTNASSFENIKSWRDEFL------VHANVNSP----ETFPFVILGN 126

Query: 122 KKDL-HMERMISYDEGKRLAESW-KAGFVEASAKQD 155
           K D    ++++S    + LA+S         SAK  
Sbjct: 127 KIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNA 162

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 97.3 bits (243), Expect = 3e-26
 Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 26/161 (16%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTI-----------ENTFVKTTRMNNQDYDLKLVDTAGQ 53
            VGK+S+  Q+ DG+F   +  T+                       Q   L+L DTAG 
Sbjct: 21  GVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL 80

Query: 54  DEY-SIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVS 112
           + + S+  A +  D  G++L++ +T+ +SF  V+    +L                +   
Sbjct: 81  ERFRSLTTAFFR-DAMGFLLLFDLTNEQSFLNVRNWISQLQMH-------------AYSE 126

Query: 113 SVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           +  IVL GNK DL  +R +  +E + LAE +   + E SA 
Sbjct: 127 NPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA 167

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 97.4 bits (243), Expect = 3e-26
 Identities = 35/158 (22%), Positives = 63/158 (39%), Gaps = 19/158 (12%)

Query: 5   SVGKSSLSIQFVD--GQFVDSYDPTIENTF-VKTTRMNNQDYDLKL--VDTAGQDEY-SI 58
           +VGKS+L   F     +F+  Y  T      V    + +    ++L  +DTAG D Y   
Sbjct: 30  TVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQ 89

Query: 59  FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
               ++  ++  +LV+ ++S +SFE  +            ++++           +  VL
Sbjct: 90  ISQYWN-GVYYAILVFDVSSMESFESCK-------AWFELLKSARPDRE----RPLRAVL 137

Query: 119 VGNKKDL-HMERMISYDEGKRLAESWKAGFVEASAKQD 155
           V NK DL      +  D  +  A +    F + SA   
Sbjct: 138 VANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPP 175

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 93.7 bits (233), Expect = 6e-25
 Identities = 38/162 (23%), Positives = 72/162 (44%), Gaps = 27/162 (16%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYS 64
           +VGK+ L + + +  F + Y PT+ + +  +  +  + Y L L DTAGQ++Y        
Sbjct: 28  AVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY 87

Query: 65  MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD 124
                +++ +S+ +  SF+ V    ++            V        +VP +L+G + D
Sbjct: 88  PMTDVFLICFSVVNPASFQNV---KEE-----------WVPELKEYAPNVPFLLIGTQID 133

Query: 125 L------------HMERMISYDEGKRLAESWKA-GFVEASAK 153
           L              E+ I  ++G++LA+   A  +VE SA 
Sbjct: 134 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL 175

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 93.7 bits (233), Expect = 9e-25
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 29/166 (17%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFP 60
           G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAGQ++Y  + P
Sbjct: 37  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP 96

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y      +++ +S+ S  SFE V+  +                 P     + PI+LVG
Sbjct: 97  LSYP-QTDVFLICFSLVSPASFENVRAKW---------YPEVRHHCP-----NTPIILVG 141

Query: 121 NKKDL------------HMERMISYDEGKRLAESWKA-GFVEASAK 153
            K DL                 I+Y +G  +A+   A  ++E SA 
Sbjct: 142 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 91.7 bits (228), Expect = 3e-24
 Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 27/165 (16%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA 61
           G    GK++L   F    F ++Y PT+   +  +  ++ Q  +L L DT+G   Y     
Sbjct: 14  GDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP 73

Query: 62  QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121
               D    ++ + I+  ++ + V   +                       +  ++LVG 
Sbjct: 74  LSYPDSDAVLICFDISRPETLDSVLKKW--------------KGEIQEFCPNTKMLLVGC 119

Query: 122 KKDL------------HMERMISYDEGKRLAESWKA-GFVEASAK 153
           K DL            H +  +SYD+G  +A+   A  ++E SA 
Sbjct: 120 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 164

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 91.7 bits (228), Expect = 5e-24
 Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 29/166 (17%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFP 60
           G  + GK+ L I F   +F + Y PT+   +V    ++ +  +L L DTAGQ++Y  + P
Sbjct: 32  GDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP 91

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y  D    ++ +S+ S  S E +   +         +       P     +VPI+LV 
Sbjct: 92  LSYP-DTDVILMCFSVDSPDSLENIPEKW---------VPEVKHFCP-----NVPIILVA 136

Query: 121 NKKDL------------HMERMISYDEGKRLAESWKA-GFVEASAK 153
           NKKDL              +  +  D+G+ +A   +A  ++E SAK
Sbjct: 137 NKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 182

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 91.7 bits (228), Expect = 7e-24
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 29/166 (17%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFP 60
           G    GK+SL + F DG F +SY PT+   ++   ++  +   L + DTAGQD+Y  + P
Sbjct: 41  GDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRP 100

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y  D    +L + +TS  SF+ +    ++      ++ +            VPI++VG
Sbjct: 101 LFYP-DASVLLLCFDVTSPNSFDNIF---NRWYP---EVNH--------FCKKVPIIVVG 145

Query: 121 NKKDL------------HMERMISYDEGKRLAESWKA-GFVEASAK 153
            K DL            +    ++Y  G+ +A S  A  ++E SA+
Sbjct: 146 CKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 92.0 bits (228), Expect = 1e-23
 Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 22/149 (14%)

Query: 14  QFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKL--VDTAGQDEYSIFPAQY----SMDI 67
           +F+D Q    +  T    ++K           KL    T        F  +      + +
Sbjct: 104 EFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLV 163

Query: 68  HGYVLVYSITSH--KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDL 125
            G++L   ++    ++F+        L +   K             +  PIV+V  K D 
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK-------------TKKPIVVVLTKCDE 210

Query: 126 HMERMISYDEGKRLAESWKAGFVEASAKQ 154
            +ER I       L++      VE SA+ 
Sbjct: 211 GVERYIRDAHTFALSK-KNLQVVETSARS 238

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 89.8 bits (223), Expect = 3e-23
 Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 29/166 (17%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFP 60
           G  + GK+ L I F   QF + Y PT+   ++    ++ +  +L L DTAGQ++Y  + P
Sbjct: 32  GDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRP 91

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y  D    ++ +SI S  S E +    +K      ++++           +VPI+LVG
Sbjct: 92  LSYP-DTDVILMCFSIDSPDSLENIP---EKWT---PEVKH--------FCPNVPIILVG 136

Query: 121 NKKDL------------HMERMISYDEGKRLAESWKA-GFVEASAK 153
           NKKDL              +  +  +EG+ +A    A G++E SAK
Sbjct: 137 NKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 90.1 bits (224), Expect = 3e-23
 Identities = 28/151 (18%), Positives = 59/151 (39%), Gaps = 20/151 (13%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
             GK++   + + G+F   Y  T+           N       + DTAGQ+++  +    
Sbjct: 25  GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 84

Query: 63  YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
           Y +     ++++ +TS  +++ V   +  L+ +                 ++PIVL GNK
Sbjct: 85  Y-IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---------------ENIPIVLCGNK 128

Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
            D+   ++    +           + + SAK
Sbjct: 129 VDIKDRKVK--AKSIVFHRKKNLQYYDISAK 157

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 89.0 bits (221), Expect = 6e-23
 Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 29/166 (17%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFP 60
           G    GK++L   F    F ++Y PT+   +  +  ++ Q  +L L DT+G   Y ++ P
Sbjct: 35  GDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP 94

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y  D    ++ + I+  ++ + V   +                       +  ++LVG
Sbjct: 95  LSYP-DSDAVLICFDISRPETLDSVLKKW--------------KGEIQEFCPNTKMLLVG 139

Query: 121 NKKDL------------HMERMISYDEGKRLAESWKA-GFVEASAK 153
            K DL            H +  +SYD+G  +A+   A  ++E SA 
Sbjct: 140 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 185

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 88.8 bits (220), Expect = 9e-23
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 29/170 (17%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFP 60
           G    GK+++        + ++Y PT+   +        Q  +L L DT+G   Y ++ P
Sbjct: 34  GDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRP 93

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             YS D    +L + I+  ++ +     +                 P     S  ++L+G
Sbjct: 94  LCYS-DSDAVLLCFDISRPETVDSALKKW---------RTEILDYCP-----STRVLLIG 138

Query: 121 NKKDL------------HMERMISYDEGKRLAESWKA-GFVEASAKQDDY 157
            K DL              +  ISY++G  +A+   A  ++E SA   + 
Sbjct: 139 CKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEK 188

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 86.8 bits (215), Expect = 4e-22
 Identities = 37/192 (19%), Positives = 67/192 (34%), Gaps = 59/192 (30%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTI--------------------------------- 28
           G  SVGKSS+ ++     F ++ + TI                                 
Sbjct: 14  GESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSIND 73

Query: 29  -----ENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQYSMDIHGYVLVYSITSHKSF 82
                          N  +    + DTAGQ+ Y SI P  Y       ++V+ I++  + 
Sbjct: 74  DNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYR-GATCAIVVFDISNSNTL 132

Query: 83  EVVQI-LYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE 141
           +  +  +          ++ SS         +  I+LV NK D + +  +   E ++ A+
Sbjct: 133 DRAKTWVNQ--------LKISS---------NYIIILVANKIDKN-KFQVDILEVQKYAQ 174

Query: 142 SWKAGFVEASAK 153
                F++ SAK
Sbjct: 175 DNNLLFIQTSAK 186

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 86.4 bits (214), Expect = 4e-22
 Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 29/167 (17%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAGQ++Y  + 
Sbjct: 11  VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 70

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
           P  Y       ++ +S+ S  SFE V+  +                 P       PI+LV
Sbjct: 71  PLSYP-QTDVSLICFSLVSPASFENVRAKW---------YPEVRHHCPN-----TPIILV 115

Query: 120 GNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASAK 153
           G K DL                 I+Y +G  +A+   A  ++E SA 
Sbjct: 116 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 84.5 bits (209), Expect = 1e-21
 Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 20/158 (12%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
           G  +VGKSS+ ++FV   F ++ +PTI   F  +   +N      ++ DTAGQ+ + S+ 
Sbjct: 10  GEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLA 69

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
           P  Y  +    ++VY +T  +SF   +    +L +                   + I LV
Sbjct: 70  PXYYR-NAQAALVVYDVTKPQSFIKARHWVKELHEQAS--------------KDIIIALV 114

Query: 120 GNKKDLHM---ERMISYDEGKRLAESWKAGFVEASAKQ 154
           GNK D      ER ++ +EG++LAE     F E SAK 
Sbjct: 115 GNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKT 152

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 83.1 bits (205), Expect = 2e-19
 Identities = 24/167 (14%), Positives = 46/167 (27%), Gaps = 31/167 (18%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTT---------RMNNQDYDLKLVDTA 51
           +G    GK+SL  Q +   F      T     V                ++      D  
Sbjct: 47  IGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFG 106

Query: 52  GQDEY-SIFPAQYSMDIHGYVLVYSITSHKSFEV-VQILYDKLLDMTGKIQNSSVKSPTS 109
           GQ+   +      +     Y+L+    +  +    ++ +                     
Sbjct: 107 GQEIMHASHQFFMT-RSSVYMLLLDSRTDSNKHYWLRHIE-------------------K 146

Query: 110 CVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
                P+++V NK D +    I   +      + +  F   S K  D
Sbjct: 147 YGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD 193

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 74.3 bits (183), Expect = 1e-17
 Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 30/170 (17%)

Query: 2   GYRSVGKSSLSIQFVDGQFVD--SYDPTIENTF-VKTTRMNNQDYD---LKLVDTAGQDE 55
           G    GK++L  Q +  +  D      T+         ++ ++      L + D AG++E
Sbjct: 9   GNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE 68

Query: 56  Y-SIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSV 114
           + S  P   +     Y+ VY ++  ++        D +      I+  +        SS 
Sbjct: 69  FYSTHPHFMT-QRALYLAVYDLSKGQAE------VDAMKPWLFNIKARA--------SSS 113

Query: 115 PIVLVGNKKDLHMER---MISYDEGKRLAES-----WKAGFVEASAKQDD 156
           P++LVG   D+  E+          K L         +      + ++ D
Sbjct: 114 PVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESD 163

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 71.9 bits (176), Expect = 9e-16
 Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 31/167 (18%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA 61
           G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAG ++Y     
Sbjct: 162 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP 221

Query: 62  QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSP--TSCVSSVPIVLV 119
                   +++ +S+ S  SF  V+    K               P       + PI+LV
Sbjct: 222 LSYPQTDVFLICFSLVSPASFHHVR---AKWY-------------PEVRHHCPNTPIILV 265

Query: 120 GNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASAK 153
           G K DL                 I+Y +G  +A+   A  ++E SA 
Sbjct: 266 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 312

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 22/151 (14%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENT--FVKTTRMNNQDYDLKLVDTAGQDEY-- 56
           MG    GKSS+    +   +       +  T     +      +  L L D  GQD +  
Sbjct: 9   MGRSGSGKSSM-RSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME 67

Query: 57  SIFPAQYSM---DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSS 113
           + F  Q       +   + V+ + S +  + ++I    L  +    + S           
Sbjct: 68  NYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLR---KYS---------PD 115

Query: 114 VPIVLVGNKKDL--HMERMISYDEGKRLAES 142
             I ++ +K DL    +R   +    +    
Sbjct: 116 AKIFVLLHKMDLVQLDKREELFQIMMKNLSE 146

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 37.0 bits (86), Expect = 9e-04
 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 16/122 (13%)

Query: 7   GKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQYSM 65
           GK+ L ++ + GQ+ D+   +I ++       NN+   L L+D  G +        ++  
Sbjct: 19  GKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKS 77

Query: 66  DIHGYVLVYSITSHKSF--EVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKK 123
                V V    + +    +V + LY  L+D              +  +S  +++  NK+
Sbjct: 78  SARAVVFVVDSAAFQREVKDVAEFLYQVLID------------SMALKNSPSLLIACNKQ 125

Query: 124 DL 125
           D+
Sbjct: 126 DI 127

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	157
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.98
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.98
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.98
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.98
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.98
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.97
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.94
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.96
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.96
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.96
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.96
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.96
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.94
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.93
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.93
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.93
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.93
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.92
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.92
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.92
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.92
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.91
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.91
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.91
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.91
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.9
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.89
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.89
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.88
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.88
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.88
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.88
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.87
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.87
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.87
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.87
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.86
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.86
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.86
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.85
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.84
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.83
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.83
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.83
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.82
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.82
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.82
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.82
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.81
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.81
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.81
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.81
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.8
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.8
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.8
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.8
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.8
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.8
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.8
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.8
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.79
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.79
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.79
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.79
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.79
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.78
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.78
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.78
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.78
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.77
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.77
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.77
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.76
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.76
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.76
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.75
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.74
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.73
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.73
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.73
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.72
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.72
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.71
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.71
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.7
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.7
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.7
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.7
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.68
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.65
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.65
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.65
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.6
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.57
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.56
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.55
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.55
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.55
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.55
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.54
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.54
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.48
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.46
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.4
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.4
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.35
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.34
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.28
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.25
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.22
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.21
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.12
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.09
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.06
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.88
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.79
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.75
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.72
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.61
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.5
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.49
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.48
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.46
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.19
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.19
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.1
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.02
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.0
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.98
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.95
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	97.82
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.81
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.81
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.68
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.56
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.46
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.46
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.39
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	96.93
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.87
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.78
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.74
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.67
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.65
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.62
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.62
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.57
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.54
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.5
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.49
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.45
2xxa_A	433	Signal recognition particle protein; protein trans	96.41
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.4
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.39
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.37
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.33
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.29
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.28
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.28
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.24
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.22
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.22
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.22
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.21
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.2
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.19
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.17
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.16
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.16
1g6h_A	257	High-affinity branched-chain amino acid transport	96.14
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.14
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.11
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.1
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.07
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.07
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.06
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.05
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.05
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.04
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.04
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.04
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.03
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.02
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.01
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.01
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.0
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.0
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.98
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.98
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.97
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	95.96
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.95
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.95
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.94
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.94
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.92
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.89
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.86
4a74_A	231	DNA repair and recombination protein RADA; hydrola	95.85
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.85
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.83
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	95.78
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	95.76
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.76
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	95.72
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	95.72
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	95.71
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.71
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	95.7
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.69
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	95.69
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	95.68
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.68
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.67
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	95.66
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	95.61
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	95.59
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.5
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	95.44
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.44
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	95.43
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.42
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.42
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	95.41
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	95.41
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	95.39
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.38
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.37
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.37
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.36
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	95.35
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	95.34
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.33
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.3
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.28
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.28
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.27
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.26
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.24
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.21
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.19
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.17
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.14
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	95.13
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.12
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.1
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.08
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.08
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.04
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	95.03
1via_A	175	Shikimate kinase; structural genomics, transferase	95.03
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.01
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.01
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	94.99
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	94.99
2ewv_A	372	Twitching motility protein PILT; pilus retraction	94.98
3kta_A	182	Chromosome segregation protein SMC; structural mai	94.97
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	94.93
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	94.92
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	94.91
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	94.91
2cvh_A	220	DNA repair and recombination protein RADB; filamen	94.9
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	94.9
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	94.89
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	94.88
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	94.88
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	94.86
2og2_A	359	Putative signal recognition particle receptor; nuc	94.84
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	94.83
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	94.78
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	94.76
3bos_A	242	Putative DNA replication factor; P-loop containing	94.75
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	94.73
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	94.73
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	94.73
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	94.72
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	94.72
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	94.72
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	94.71
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	94.69
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	94.65
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	94.64
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	94.64
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	94.64
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	94.63
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	94.62
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.62
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	94.6
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	94.6
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	94.58
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	94.58
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	94.57
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	94.57
1p9r_A	418	General secretion pathway protein E; bacterial typ	94.56
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	94.55
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	94.53
3end_A	307	Light-independent protochlorophyllide reductase ir	94.53
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	94.51
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	94.48
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	94.46
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	94.44
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	94.44
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.43
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	94.42
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	94.39
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	94.36
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	94.35
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.34
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	94.34
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	94.34
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	94.33
2vli_A	183	Antibiotic resistance protein; transferase, tunica	94.33
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	94.26
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	94.25
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.24
1tue_A	212	Replication protein E1; helicase, replication, E1E	94.24
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	94.23
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	94.23
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	94.2
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	94.15
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.1
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	94.07
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	94.06
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	94.04
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	94.02
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	94.02
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.0
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	93.98
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.95
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	93.92
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	93.91
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	93.91
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	93.9
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	93.89
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	93.89
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	93.87
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	93.85
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	93.83
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.8
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	93.8
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	93.77
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	93.77
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	93.75
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	93.7
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	93.67
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	93.66
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	93.65
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	93.64
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	93.54
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	93.52
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	93.45
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	93.45
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	93.44
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	93.41
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	93.4
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	93.4
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	93.39
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	93.37
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	93.34
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	93.3
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	93.25
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	93.24
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	93.21
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	93.18
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	93.17
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	93.16
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	93.09
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	93.09
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	93.08
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	93.08
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	93.03
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	93.02
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	92.95
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	92.94
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	92.94
3co5_A	143	Putative two-component system transcriptional RES	92.86
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	92.82
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	92.82
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	92.79
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	92.76
2fna_A	357	Conserved hypothetical protein; structural genomic	92.75
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	92.75
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	92.74
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	92.73
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	92.72
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	92.69
3cwq_A	209	Para family chromosome partitioning protein; alpha	92.69
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	92.64
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	92.63
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	92.58
2qgz_A	308	Helicase loader, putative primosome component; str	92.54
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	92.51
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	92.49
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	92.43
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	92.4
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	92.39
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	92.37
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	92.34
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	92.28
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	92.27
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	92.26
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	92.19
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	92.18
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	92.13

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=4.2e-41  Score=232.16  Aligned_cols=143  Identities=36%  Similarity=0.503  Sum_probs=126.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||++||+.+.|...+.+|++..+ .+.+.+++..+.++||||+|+++|..+++.++++++++++|||++++
T Consensus        19 vGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~   98 (216)
T 4dkx_A           19 LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNV   98 (216)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCH
T ss_pred             ECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchh
Confidence            69999999999999999999999999999554 77888899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +||+.+..|+..+.......              +|++|||||+|+.+.++++.++++.++++++++|+||||++|+|
T Consensus        99 ~Sf~~i~~~~~~i~~~~~~~--------------~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~n  162 (216)
T 4dkx_A           99 NSFQQTTKWIDDVRTERGSD--------------VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN  162 (216)
T ss_dssp             HHHHTHHHHHHHHHHHHTTS--------------SEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBS
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcC
Confidence            99999999999998776543              99999999999998899999999999999999999999999987

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=9.3e-35  Score=194.82  Aligned_cols=144  Identities=72%  Similarity=1.169  Sum_probs=132.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++.+|++++|||+++++
T Consensus        12 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   91 (181)
T 3t5g_A           12 LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIK   91 (181)
T ss_dssp             EESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHH
T ss_pred             ECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHH
Confidence            69999999999999999999888999999888888889999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..+........             +|+++|+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus        92 s~~~~~~~~~~~~~~~~~~~-------------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  155 (181)
T 3t5g_A           92 SFEVIKVIHGKLLDMVGKVQ-------------IPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQT  155 (181)
T ss_dssp             HHHHHHHHHHHHHHHC-----------------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCC
Confidence            99999999999987765444             99999999999988889999999999999999999999999864

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=3.2e-34  Score=192.52  Aligned_cols=144  Identities=40%  Similarity=0.636  Sum_probs=133.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.++++..+...+.+++..+.+.+||++|++.+..++..+++.+|++|+|||+++++
T Consensus        24 ~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~  103 (183)
T 3kkq_A           24 VGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKA  103 (183)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHH
Confidence            69999999999999999999888889998888888889999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccc-cCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAK-QDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~-~~~~  157 (157)
                      +++.+..|+..+........             +|+++|+||+|+.+.+.+..+++..+++.++++++++||+ +|+|
T Consensus       104 s~~~~~~~~~~~~~~~~~~~-------------~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~  168 (183)
T 3kkq_A          104 SFEHVDRFHQLILRVKDRES-------------FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLN  168 (183)
T ss_dssp             HHHTHHHHHHHHHHHHTSSC-------------CCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBS
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCC
Confidence            99999999999987665444             9999999999998888999999999999999999999999 8876

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=2.5e-34  Score=194.17  Aligned_cols=145  Identities=30%  Similarity=0.497  Sum_probs=126.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+++||++|++++..+ ..+++++|++|+|||+++++
T Consensus        27 vG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~  105 (187)
T 3c5c_A           27 LGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQ  105 (187)
T ss_dssp             ECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHH
T ss_pred             ECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHH
Confidence            69999999999999999999888999999888777888999999999999999998886 67899999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecc-ccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA-KQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa-~~~~~  157 (157)
                      +++.+..|+..+.......           ...+|++|||||+|+...+.+..+++..+++.++++++++|| ++|+|
T Consensus       106 s~~~~~~~~~~i~~~~~~~-----------~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~g  172 (187)
T 3c5c_A          106 SFDSSSSYLELLALHAKET-----------QRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEH  172 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-----------CCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHH
T ss_pred             HHHHHHHHHHHHHHHhhcc-----------CCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCcccc
Confidence            9999999999988765320           012999999999999877888999999999999999999999 88864

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=1.7e-34  Score=198.94  Aligned_cols=142  Identities=23%  Similarity=0.375  Sum_probs=127.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++++|++|+|||+++++
T Consensus        33 vG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~  112 (214)
T 3q3j_B           33 VGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPE  112 (214)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTH
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHH
Confidence            69999999999999999999988999999888777888888999999999999999999999999999999999999999


Q ss_pred             hHHH-HHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-c
Q psy1873          81 SFEV-VQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-G  146 (157)
Q Consensus        81 s~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~  146 (157)
                      +++. +..|+..+.....  .             +|++|||||+|+.+.            +.+..+++..+++.+++ +
T Consensus       113 s~~~~~~~~~~~i~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  177 (214)
T 3q3j_B          113 TVDSALKKWRTEILDYCP--S-------------TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEI  177 (214)
T ss_dssp             HHHHHHTHHHHHHHHHCT--T-------------SEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCE
Confidence            9999 6888888876643  2             999999999999653            67899999999999999 9


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      |+||||++|+|
T Consensus       178 ~~e~SA~~g~g  188 (214)
T 3q3j_B          178 YLEGSAFTSEK  188 (214)
T ss_dssp             EEECCTTTCHH
T ss_pred             EEEeccCCCcc
Confidence            99999999864

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=1.9e-34  Score=193.68  Aligned_cols=143  Identities=29%  Similarity=0.492  Sum_probs=100.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++++..++..+++++|++|+|||++++
T Consensus        14 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   93 (183)
T 2fu5_C           14 IGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNE   93 (183)
T ss_dssp             ECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCH
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCH
Confidence            69999999999999999888877888888555 56777899889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              +|++||+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus        94 ~s~~~~~~~~~~i~~~~~~~--------------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  157 (183)
T 2fu5_C           94 KSFDNIRNWIRNIEEHASAD--------------VEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN  157 (183)
T ss_dssp             HHHHHHHHHHHHHHHHSCTT--------------CEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CC
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            99999999998887764322              99999999999988788888999999999999999999999986

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=4.3e-34  Score=188.89  Aligned_cols=144  Identities=40%  Similarity=0.714  Sum_probs=131.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++.+|++++|||++++.
T Consensus         9 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~   88 (167)
T 1c1y_A            9 LGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQS   88 (167)
T ss_dssp             ECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHH
Confidence            69999999999999999998888889988777777788888899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW-KAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..+........             .|+++|+||+|+.+.+.+..+++..+++.+ +++++++||++|+|
T Consensus        89 s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  153 (167)
T 1c1y_A           89 TFNDLQDLREQILRVKDTED-------------VPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKIN  153 (167)
T ss_dssp             HHHTHHHHHHHHHHHHCCSC-------------CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBS
T ss_pred             HHHHHHHHHHHHHHhhCcCC-------------CcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCC
Confidence            99999999999887764333             999999999999887888889999999988 78999999999986

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=8.5e-34  Score=189.71  Aligned_cols=144  Identities=38%  Similarity=0.634  Sum_probs=132.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++.+|++++|||+++++
T Consensus        15 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~   94 (181)
T 2fn4_A           15 VGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQ   94 (181)
T ss_dssp             EECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHH
Confidence            69999999999999999999888889998877777888998899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..++.......             +|+++|+||+|+...+.+..+++..++..++++++++||++|+|
T Consensus        95 s~~~~~~~~~~~~~~~~~~~-------------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g  158 (181)
T 2fn4_A           95 SFNEVGKLFTQILRVKDRDD-------------FPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLN  158 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTSSC-------------CCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Confidence            99999999999977665433             99999999999987778888999999999999999999999986

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=1.1e-33  Score=187.52  Aligned_cols=143  Identities=34%  Similarity=0.499  Sum_probs=123.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++|||++++
T Consensus        12 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   91 (170)
T 1z08_A           12 LGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDE   91 (170)
T ss_dssp             ECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCH
T ss_pred             ECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCH
Confidence            69999999999999999988888888888665 56777888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              +|+++|+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus        92 ~s~~~~~~~~~~~~~~~~~~--------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  155 (170)
T 1z08_A           92 DSFQKVKNWVKELRKMLGNE--------------ICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKG  155 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHGGG--------------SEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBS
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Confidence            99999999998887665433              99999999999987778888999999999999999999999986

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=9.4e-34  Score=192.65  Aligned_cols=144  Identities=26%  Similarity=0.347  Sum_probs=123.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcC-chhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSI-FPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~ilv~d~~~   78 (157)
                      ||++|||||||+++|++......+.++++ +.+...+.+++..+.+.+||++|++.+.. ++..+++.+|++|+|||+++
T Consensus        29 vG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~  108 (195)
T 3cbq_A           29 VGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTD  108 (195)
T ss_dssp             ECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTC
T ss_pred             ECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCC
Confidence            69999999999999986655433444444 55577788899999999999999998775 78888999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++|+.+..|+..+........             +|+++||||+|+.+.+.+..+++..+++.++++++|+||++|+|
T Consensus       109 ~~s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~  174 (195)
T 3cbq_A          109 RRSFSKVPETLLRLRAGRPHHD-------------LPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHN  174 (195)
T ss_dssp             HHHHHTHHHHHHHHHHHSTTSC-------------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBS
T ss_pred             HHHHHHHHHHHHHHHHhcCCCC-------------CCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCC
Confidence            9999999999998877654223             99999999999988788888999999999999999999999986

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=4.7e-34  Score=194.89  Aligned_cols=143  Identities=31%  Similarity=0.476  Sum_probs=121.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus        35 vG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~  114 (201)
T 2hup_A           35 VGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKR  114 (201)
T ss_dssp             EECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBH
T ss_pred             ECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCH
Confidence            69999999999999999998888888888555 67778889889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~  157 (157)
                      ++++.+..|+..+.......              +|++||+||+|+.+.+.+..+++..+++.+++ +++++||++|+|
T Consensus       115 ~s~~~~~~~~~~i~~~~~~~--------------~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g  179 (201)
T 2hup_A          115 SSFLSVPHWIEDVRKYAGSN--------------IVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSN  179 (201)
T ss_dssp             HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBS
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCC
Confidence            99999999999887765322              99999999999987778888999999999999 999999999986

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=1.1e-33  Score=186.89  Aligned_cols=143  Identities=31%  Similarity=0.374  Sum_probs=106.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|.+..+. ...++.+..+...+.+++..+.+.+||++|++.+..++..+++.++++++|||+++++
T Consensus         8 vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~   86 (166)
T 3q72_A            8 LGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKG   86 (166)
T ss_dssp             EESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHH
Confidence            699999999999999976654 3345666667777889999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..+........             +|+++|+||+|+.+.+.+..+++..++..++++++++||++|+|
T Consensus        87 s~~~~~~~~~~~~~~~~~~~-------------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  150 (166)
T 3q72_A           87 SFEKASELRVQLRRARQTDD-------------VPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHN  150 (166)
T ss_dssp             HHHHHHHHHHHHHHCC---C-------------CCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBS
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCC
Confidence            99999999999887654333             99999999999988889999999999999999999999999986

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=9.3e-34  Score=187.17  Aligned_cols=144  Identities=34%  Similarity=0.633  Sum_probs=129.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++.+|++++|||+++++
T Consensus        10 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~   89 (168)
T 1u8z_A           10 VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME   89 (168)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHH
Confidence            69999999999999999998888888888777777788999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..+........             .|+++|+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus        90 s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  153 (168)
T 1u8z_A           90 SFAATADFREQILRVKEDEN-------------VPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRAN  153 (168)
T ss_dssp             HHHHHHHHHHHHHHHHCCTT-------------SCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCC
Confidence            99999999999988776433             99999999999987778888999999999999999999999986

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7e-34  Score=194.21  Aligned_cols=143  Identities=31%  Similarity=0.474  Sum_probs=129.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus        32 vG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~  111 (201)
T 2ew1_A           32 IGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCE  111 (201)
T ss_dssp             EESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCH
T ss_pred             ECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCH
Confidence            69999999999999999998888888888555 67778899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              .|+++|+||+|+.+.+.+..+++..++...+++++++||++|+|
T Consensus       112 ~s~~~~~~~~~~i~~~~~~~--------------~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~g  175 (201)
T 2ew1_A          112 ESFRCLPEWLREIEQYASNK--------------VITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDN  175 (201)
T ss_dssp             HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            99999999998887665332              89999999999987778888999999999999999999999986

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=2.1e-33  Score=185.97  Aligned_cols=143  Identities=31%  Similarity=0.484  Sum_probs=129.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus        12 ~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   91 (170)
T 1r2q_A           12 LGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE   91 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCH
Confidence            69999999999999999988877888888655 66777888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              +|+++|+||+|+.+.+.+..+++..++...+++++++||++|+|
T Consensus        92 ~s~~~~~~~~~~~~~~~~~~--------------~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  155 (170)
T 1r2q_A           92 ESFARAKNWVKELQRQASPN--------------IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN  155 (170)
T ss_dssp             HHHHHHHHHHHHHHHHSCTT--------------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            99999999999887765332              99999999999977778888899999999999999999999986

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=4.4e-33  Score=186.42  Aligned_cols=143  Identities=29%  Similarity=0.433  Sum_probs=129.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus        18 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   97 (181)
T 2efe_B           18 LGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQ   97 (181)
T ss_dssp             ECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCH
T ss_pred             ECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCH
Confidence            69999999999999999998887778888555 67777888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              +|+++|+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus        98 ~s~~~~~~~~~~~~~~~~~~--------------~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  161 (181)
T 2efe_B           98 ASFERAKKWVQELQAQGNPN--------------MVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATN  161 (181)
T ss_dssp             HHHHHHHHHHHHHHHHSCTT--------------CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTT
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence            99999999999888765332              99999999999987788888999999999999999999999986

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=2.8e-33  Score=189.76  Aligned_cols=142  Identities=27%  Similarity=0.409  Sum_probs=127.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+++||++|++++..++..+++++|++|+|||+++++
T Consensus        29 vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~  108 (194)
T 3reg_A           29 VGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRT  108 (194)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHH
Confidence            69999999999999999999888899999888778889999999999999999999999999999999999999999999


Q ss_pred             hHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC--CceecHHHHHHHHHHhCCc-EEEeccccCC
Q psy1873          81 SFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM--ERMISYDEGKRLAESWKAG-FVEASAKQDD  156 (157)
Q Consensus        81 s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~  156 (157)
                      +++.+ ..|+..+..... .              +|+++|+||+|+.+  .+.+..+++..+++.++++ ++++||++|+
T Consensus       109 s~~~~~~~~~~~~~~~~~-~--------------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  173 (194)
T 3reg_A          109 SFDNISTKWEPEIKHYID-T--------------AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKI  173 (194)
T ss_dssp             HHHHHHHTHHHHHHHHCT-T--------------SEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTB
T ss_pred             HHHHHHHHHHHHHHHhCC-C--------------CCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCC
Confidence            99998 566666654432 2              99999999999965  3778899999999999997 9999999998


Q ss_pred             C
Q psy1873         157 Y  157 (157)
Q Consensus       157 ~  157 (157)
                      |
T Consensus       174 g  174 (194)
T 3reg_A          174 G  174 (194)
T ss_dssp             S
T ss_pred             C
Confidence            6

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=6.5e-34  Score=187.76  Aligned_cols=144  Identities=38%  Similarity=0.708  Sum_probs=131.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.++++..+...+.+++..+.+.+||++|++++..++..+++.++++++|||++++.
T Consensus         9 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   88 (167)
T 1kao_A            9 LGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQ   88 (167)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHH
Confidence            69999999999999999998888888888777788888999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..+........             .|+++|+||+|+...+++...++..+++.++++++++||++|+|
T Consensus        89 s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  152 (167)
T 1kao_A           89 SFQDIKPMRDQIIRVKRYEK-------------VPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTM  152 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTTSC-------------CCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcC
Confidence            99999999999987765433             99999999999987778888999999999999999999999864

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.6e-34  Score=194.34  Aligned_cols=144  Identities=55%  Similarity=0.947  Sum_probs=126.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++.+|++|+|||+++++
T Consensus        30 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~  109 (201)
T 3oes_A           30 LGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLH  109 (201)
T ss_dssp             EESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHH
Confidence            69999999999999999999888889988777777777888899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..+........             +|++||+||+|+...+.+...++..+++.++++++++||++|+|
T Consensus       110 s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  173 (201)
T 3oes_A          110 SFQVIESLYQKLHEGHGKTR-------------VPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQL  173 (201)
T ss_dssp             HHHHHHHHHHHHHC-----C-------------CCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCC
Confidence            99999999999887654433             99999999999988888999999999999999999999999864

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=2.1e-33  Score=190.07  Aligned_cols=143  Identities=31%  Similarity=0.465  Sum_probs=125.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++++|++|+|||++++
T Consensus        27 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~  106 (191)
T 2a5j_A           27 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR  106 (191)
T ss_dssp             ESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCH
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCH
Confidence            69999999999999999998877778877555 66778899889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++++.+..|+..+.......              .|++||+||+|+...+.+..+++..+++.++++++++||++|+|
T Consensus       107 ~s~~~~~~~l~~i~~~~~~~--------------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g  170 (191)
T 2a5j_A          107 ETFNHLTSWLEDARQHSSSN--------------MVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACN  170 (191)
T ss_dssp             HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            99999999998887664332              99999999999987778888999999999999999999999986

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=4.1e-33  Score=188.85  Aligned_cols=143  Identities=32%  Similarity=0.557  Sum_probs=130.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++|+|||++++
T Consensus        22 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  101 (196)
T 3tkl_A           22 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ  101 (196)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCH
T ss_pred             ECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCH
Confidence            69999999999999999998888888887555 67778899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              +|+++|+||+|+...+.+...++..++..++++++++||++|+|
T Consensus       102 ~s~~~~~~~~~~i~~~~~~~--------------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  165 (196)
T 3tkl_A          102 ESFNNVKQWLQEIDRYASEN--------------VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN  165 (196)
T ss_dssp             HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTT
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence            99999999998887765433              99999999999988888998999999999999999999999986

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=5.9e-33  Score=187.48  Aligned_cols=143  Identities=34%  Similarity=0.544  Sum_probs=129.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++++..+ ...+..++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus        28 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~  107 (189)
T 2gf9_A           28 IGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQ  107 (189)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCH
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCH
Confidence            69999999999999999998878888888665 56677888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              .|++||+||+|+...+.+..++++.+++.++++++++||++|+|
T Consensus       108 ~s~~~~~~~~~~i~~~~~~~--------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  171 (189)
T 2gf9_A          108 ESFAAVQDWATQIKTYSWDN--------------AQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN  171 (189)
T ss_dssp             HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence            99999999998887664222              99999999999987778888899999999999999999999986

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=2.6e-33  Score=191.19  Aligned_cols=144  Identities=35%  Similarity=0.636  Sum_probs=132.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++.+|++++|||+++++
T Consensus        20 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   99 (206)
T 2bov_A           20 VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME   99 (206)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHH
Confidence            69999999999999999998888889988877777888999899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..+........             +|++||+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus       100 s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  163 (206)
T 2bov_A          100 SFAATADFREQILRVKEDEN-------------VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN  163 (206)
T ss_dssp             HHHHHHHHHHHHHHHTTCSC-------------CCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCC
Confidence            99999999999988765433             99999999999987778888999999999999999999999986

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.5e-33  Score=185.73  Aligned_cols=142  Identities=32%  Similarity=0.495  Sum_probs=127.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++|+|||++++
T Consensus        15 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   94 (181)
T 3tw8_B           15 IGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSA   94 (181)
T ss_dssp             ECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCH
Confidence            69999999999999999988878888887555 67778899889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+......               .|+++|+||+|+.+.+.+...++..++..++++++++||++|+|
T Consensus        95 ~s~~~~~~~~~~~~~~~~~---------------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  157 (181)
T 3tw8_B           95 ESFVNVKRWLHEINQNCDD---------------VCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVN  157 (181)
T ss_dssp             HHHHHHHHHHHHHHHHCTT---------------SEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBS
T ss_pred             HHHHHHHHHHHHHHHhCCC---------------CCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence            9999999999988765432               99999999999988888888999999999999999999999986

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=3.7e-33  Score=184.76  Aligned_cols=143  Identities=32%  Similarity=0.520  Sum_probs=128.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++|||++++
T Consensus         9 ~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   88 (170)
T 1ek0_A            9 LGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKP   88 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCCh
Confidence            69999999999999999998888888888655 67778888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC---ceecHHHHHHHHHHhCCcEEEeccccCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME---RMISYDEGKRLAESWKAGFVEASAKQDD  156 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  156 (157)
                      .+++.+..|+..+.......              .|+++|+||+|+.+.   +.+..+++..++..++++++++||++|+
T Consensus        89 ~s~~~~~~~~~~~~~~~~~~--------------~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  154 (170)
T 1ek0_A           89 QSFIKARHWVKELHEQASKD--------------IIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGE  154 (170)
T ss_dssp             HHHHHHHHHHHHHHHHSCTT--------------CEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            99999999999888765332              999999999999655   6788889999999999999999999998


Q ss_pred             C
Q psy1873         157 Y  157 (157)
Q Consensus       157 ~  157 (157)
                      |
T Consensus       155 g  155 (170)
T 1ek0_A          155 N  155 (170)
T ss_dssp             T
T ss_pred             C
Confidence            6

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=2.8e-33  Score=188.69  Aligned_cols=138  Identities=26%  Similarity=0.438  Sum_probs=122.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+| ...+...+.+++..+.+++||++|++++.     +++.+|++++|||++++.
T Consensus        26 vG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~   99 (184)
T 3ihw_A           26 VGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEI   99 (184)
T ss_dssp             ECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHH
Confidence            699999999999999999998878787 44567888899999999999999998876     778899999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC--CCceecHHHHHHHHHHhC-CcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH--MERMISYDEGKRLAESWK-AGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~  157 (157)
                      +|+.+..|+..+........             +|++|||||+|+.  ..+.+..+++..++..++ ++|++|||++|+|
T Consensus       100 s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g  166 (184)
T 3ihw_A          100 SFQTVYNYFLRLCSFRNASE-------------VPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN  166 (184)
T ss_dssp             HHHHHHHHHHHHHTTSCGGG-------------SCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence            99999999999877654333             9999999999994  567888999999999997 8999999999986

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=1.9e-33  Score=186.36  Aligned_cols=144  Identities=25%  Similarity=0.326  Sum_probs=115.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcC-chhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSI-FPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~ilv~d~~~   78 (157)
                      +|++|||||||+++|++..+...+.++.. ..+...+.+++..+.+.+||++|++++.. ++..+++.+|++++|||+++
T Consensus         8 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~   87 (169)
T 3q85_A            8 VGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTD   87 (169)
T ss_dssp             ECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTC
T ss_pred             ECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCC
Confidence            69999999999999997766544444444 55577788999999999999999999876 78888999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++++.+..|+..+........             +|+++|+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus        88 ~~s~~~~~~~~~~~~~~~~~~~-------------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (169)
T 3q85_A           88 RRSFSKVPETLLRLRAGRPHHD-------------LPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHN  153 (169)
T ss_dssp             HHHHHTHHHHHHHHHHHSTTSC-------------CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred             hHHHHHHHHHHHHHHhcccCCC-------------CCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCC
Confidence            9999999999999988765333             99999999999988888999999999999999999999999986

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.2e-33  Score=188.81  Aligned_cols=142  Identities=27%  Similarity=0.468  Sum_probs=127.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++++|++|+|||+++++
T Consensus        24 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~  103 (194)
T 2atx_A           24 VGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPA  103 (194)
T ss_dssp             EECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHH
Confidence            69999999999999999998888889998878777888888899999999999999999999999999999999999999


Q ss_pred             hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-c
Q psy1873          81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-G  146 (157)
Q Consensus        81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~  146 (157)
                      +++.+. .|+..+.....  .             +|++||+||+|+.+.            +.+..+++..+++.+++ +
T Consensus       104 s~~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  168 (194)
T 2atx_A          104 SFQNVKEEWVPELKEYAP--N-------------VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC  168 (194)
T ss_dssp             HHHHHHHTHHHHHHHHST--T-------------CCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcE
Confidence            999997 78777776533  2             999999999999653            46888999999999998 9


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      ++++||++|+|
T Consensus       169 ~~~~Sa~~g~g  179 (194)
T 2atx_A          169 YVECSALTQKG  179 (194)
T ss_dssp             EEECCTTTCTT
T ss_pred             EEEeeCCCCCC
Confidence            99999999986

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=6.7e-33  Score=189.53  Aligned_cols=143  Identities=33%  Similarity=0.556  Sum_probs=129.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus        14 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~   93 (206)
T 2bcg_Y           14 IGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQ   93 (206)
T ss_dssp             EESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCH
Confidence            69999999999999999999888888888655 66778899889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              .|++||+||+|+...+.+..+++..++..++++++++||++|+|
T Consensus        94 ~s~~~~~~~~~~i~~~~~~~--------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  157 (206)
T 2bcg_Y           94 ESFNGVKMWLQEIDRYATST--------------VLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN  157 (206)
T ss_dssp             HHHHHHHHHHHHHHHHSCTT--------------CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTT
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            99999999998887665332              99999999999988788888999999999999999999999986

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=7.8e-33  Score=183.28  Aligned_cols=143  Identities=30%  Similarity=0.417  Sum_probs=129.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus        12 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   91 (170)
T 1z0j_A           12 LGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKE   91 (170)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCH
T ss_pred             ECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCH
Confidence            69999999999999999998888888888655 66778888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              .|+++|+||+|+.+.+++..+++..+++.++++++++||++|+|
T Consensus        92 ~s~~~~~~~~~~l~~~~~~~--------------~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  155 (170)
T 1z0j_A           92 ETFSTLKNWVRELRQHGPPS--------------IVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAIN  155 (170)
T ss_dssp             HHHHHHHHHHHHHHHHSCTT--------------SEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred             HHHHHHHHHHHHHHHhCCCC--------------CcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcC
Confidence            99999999998887754332              99999999999987778888999999999999999999999986

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=4.7e-33  Score=185.27  Aligned_cols=143  Identities=32%  Similarity=0.404  Sum_probs=114.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCcc--CcCchhhhccCCCEEEEEEECC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDE--YSIFPAQYSMDIHGYVLVYSIT   77 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~~~~ilv~d~~   77 (157)
                      +|++|||||||+++|++..+...+. +.+ ..+...+.+++..+.+.+||++|++.  +..+...+++.++++++|||++
T Consensus        10 ~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~   88 (175)
T 2nzj_A           10 LGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIA   88 (175)
T ss_dssp             ECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETT
T ss_pred             ECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECC
Confidence            6999999999999999988765443 444 44467778899999999999999988  5667888999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          78 SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        78 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++.+++.+..|+..+........             +|+++|+||+|+.+.+.+..+++..++..++++++++||++|+|
T Consensus        89 ~~~s~~~~~~~~~~l~~~~~~~~-------------~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~g  155 (175)
T 2nzj_A           89 DRGSFESASELRIQLRRTHQADH-------------VPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHN  155 (175)
T ss_dssp             CHHHHHHHHHHHHHHHHCC-----------------CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBS
T ss_pred             CHHHHHHHHHHHHHHHHhhccCC-------------CCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCC
Confidence            99999999999888876533222             99999999999988788888899999999999999999999986

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=3e-33  Score=187.90  Aligned_cols=144  Identities=35%  Similarity=0.636  Sum_probs=132.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++.+|++++|||+++++
T Consensus        24 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~  103 (187)
T 2a9k_A           24 VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME  103 (187)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHH
Confidence            69999999999999999998888888888777777888999899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..+........             +|+++|+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus       104 s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  167 (187)
T 2a9k_A          104 SFAATADFREQILRVKEDEN-------------VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN  167 (187)
T ss_dssp             HHHHHHHHHHHHHHHHCCTT-------------CCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCC
Confidence            99999999999988776433             99999999999987778888999999999999999999999986

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=4.8e-33  Score=185.73  Aligned_cols=143  Identities=31%  Similarity=0.489  Sum_probs=129.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus        21 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  100 (179)
T 1z0f_A           21 IGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR  100 (179)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCH
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCH
Confidence            69999999999999999998888888888555 66777888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              .|+++|+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus       101 ~s~~~~~~~~~~~~~~~~~~--------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (179)
T 1z0f_A          101 STYNHLSSWLTDARNLTNPN--------------TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN  164 (179)
T ss_dssp             HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            99999999998887765332              99999999999987778888999999999999999999999986

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=4.6e-33  Score=187.98  Aligned_cols=142  Identities=28%  Similarity=0.473  Sum_probs=128.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCc-CchhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYS-IFPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~ilv~d~~~   78 (157)
                      +|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++. .++..+++.+|++|+|||+++
T Consensus        26 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~  105 (189)
T 1z06_A           26 IGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTN  105 (189)
T ss_dssp             ECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTC
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcC
Confidence            69999999999999999998888888888554 6777888988999999999999998 889999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccC
Q psy1873          79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD  155 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  155 (157)
                      +.+++.+..|+..+........             .|++||+||+|+.+.+.+..+++..+++.++++++++||++|
T Consensus       106 ~~s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  169 (189)
T 1z06_A          106 MASFHSLPAWIEECKQHLLAND-------------IPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNP  169 (189)
T ss_dssp             HHHHHTHHHHHHHHHHHCCCSC-------------CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSG
T ss_pred             HHHHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcC
Confidence            9999999999999988764333             999999999999877788889999999999999999999998

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=2.5e-33  Score=187.21  Aligned_cols=145  Identities=28%  Similarity=0.385  Sum_probs=126.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccc-eEEEEEEECC-eEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIEN-TFVKTTRMNN-QDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   78 (157)
                      +|++|||||||+++|+++.+...+.+|++. .+...+.+++ ..+.+.+||++|++.+..++..+++.+|++|+|||+++
T Consensus        12 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~   91 (178)
T 2hxs_A           12 LGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITN   91 (178)
T ss_dssp             ECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTC
T ss_pred             ECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCC
Confidence            699999999999999999888777888874 4467777776 67899999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++++.+..|+..+........            ..| +++|+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus        92 ~~s~~~~~~~~~~i~~~~~~~~------------~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  159 (178)
T 2hxs_A           92 YQSFENLEDWYTVVKKVSEESE------------TQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDS  159 (178)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHT------------CCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred             HHHHHHHHHHHHHHHHHhcccC------------CCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence            9999999999888876543110            145 899999999987778888999999999999999999999986

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=6.9e-33  Score=188.71  Aligned_cols=142  Identities=30%  Similarity=0.460  Sum_probs=120.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++++|++|+|||++++.
T Consensus        26 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~  105 (201)
T 2q3h_A           26 VGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPS  105 (201)
T ss_dssp             ECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHH
Confidence            69999999999999999998888889998878778888999999999999999999999999999999999999999999


Q ss_pred             hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-c
Q psy1873          81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM------------ERMISYDEGKRLAESWKA-G  146 (157)
Q Consensus        81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~  146 (157)
                      +++.+. .|+..+.....  .             +|++||+||+|+..            .+.+..+++..+++.+++ +
T Consensus       106 s~~~~~~~~~~~~~~~~~--~-------------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  170 (201)
T 2q3h_A          106 SFQNVSEKWVPEIRCHCP--K-------------APIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAAS  170 (201)
T ss_dssp             HHHHHHHTHHHHHHHHCS--S-------------SCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcE
Confidence            999996 68877766543  2             99999999999865            356788899999999998 9


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      |++|||++|+|
T Consensus       171 ~~~~Sa~~g~g  181 (201)
T 2q3h_A          171 YIECSALTQKN  181 (201)
T ss_dssp             EEECCTTTCTT
T ss_pred             EEEEecCCCCC
Confidence            99999999986

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=7.6e-33  Score=188.75  Aligned_cols=143  Identities=34%  Similarity=0.530  Sum_probs=129.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++++..+ ...+..++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus        14 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~   93 (203)
T 1zbd_A           14 IGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNE   93 (203)
T ss_dssp             ECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCH
Confidence            69999999999999999998888888888555 56777888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              .|+++|+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus        94 ~s~~~~~~~~~~i~~~~~~~--------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  157 (203)
T 1zbd_A           94 ESFNAVQDWSTQIKTYSWDN--------------AQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNIN  157 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCSS--------------CEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCC
Confidence            99999999998887654322              99999999999988788888999999999999999999999986

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=5.3e-33  Score=185.81  Aligned_cols=140  Identities=21%  Similarity=0.346  Sum_probs=120.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+.. +.+|++..+...+.+++..+.+++||++|+++     ..+++++|++|+|||+++++
T Consensus        13 vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~   86 (178)
T 2iwr_A           13 LGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDEN   86 (178)
T ss_dssp             ECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHH
Confidence            6999999999999999998876 77888888888888999999999999999987     56788999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC--CCceecHHHHHHHHHHh-CCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH--MERMISYDEGKRLAESW-KAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..+.......           ...+|++|||||+|+.  ..+.+..+++..++..+ +++++++||++|+|
T Consensus        87 s~~~~~~~~~~i~~~~~~~-----------~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~  155 (178)
T 2iwr_A           87 SFQAVSRLHGQLSSLRGEG-----------RGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLN  155 (178)
T ss_dssp             HHHHHHHHHHHHHHHHCSS-----------SCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBT
T ss_pred             HHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCC
Confidence            9999999877666554321           1238999999999993  46778889999999887 68999999999986

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.3e-33  Score=191.57  Aligned_cols=143  Identities=28%  Similarity=0.382  Sum_probs=119.3

Q ss_pred             CCCCCCChhhhHhhhhccc--ccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCcc-CcCchhhhccCCCEEEEEEEC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ--FVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDE-YSIFPAQYSMDIHGYVLVYSI   76 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~--~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~~ilv~d~   76 (157)
                      ||++|||||||+++|++..  +...+. +++ +.+...+.+++..+.+.+||++|++. +..+.+.+++.++++|+|||+
T Consensus        43 vG~~~vGKSSLl~r~~~~~~~~~~~~~-~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydv  121 (211)
T 2g3y_A           43 IGEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSI  121 (211)
T ss_dssp             ECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEET
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCcCC-ccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEEC
Confidence            6999999999999999643  344443 345 55577788999999999999999887 556778889999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCC
Q psy1873          77 TSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD  156 (157)
Q Consensus        77 ~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  156 (157)
                      +++++|+.+..|+..+........             +|++|||||+|+.+.+.+..++++.++..++++|+||||++|+
T Consensus       122 t~~~sf~~~~~~~~~l~~~~~~~~-------------~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~  188 (211)
T 2g3y_A          122 TDRASFEKASELRIQLRRARQTED-------------IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQH  188 (211)
T ss_dssp             TCHHHHHHHHHHHHHHHTSGGGTT-------------SCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCC-------------CcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            999999999999888765433222             9999999999998777888888999999999999999999998


Q ss_pred             C
Q psy1873         157 Y  157 (157)
Q Consensus       157 ~  157 (157)
                      |
T Consensus       189 ~  189 (211)
T 2g3y_A          189 N  189 (211)
T ss_dssp             S
T ss_pred             C
Confidence            6

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=1.1e-32  Score=185.50  Aligned_cols=143  Identities=38%  Similarity=0.632  Sum_probs=128.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|+...+...+.+++..+.+.+||++|++.+..++..+++.+|++++|||++++.
T Consensus        10 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   89 (189)
T 4dsu_A           10 VGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK   89 (189)
T ss_dssp             ECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHH
Confidence            69999999999999999998888888888777888889999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..+........             .|+++|+||+|+. .+.+..+++..+++.++++++++||++|+|
T Consensus        90 s~~~~~~~~~~~~~~~~~~~-------------~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  152 (189)
T 4dsu_A           90 SFEDIHHYREQIKRVKDSED-------------VPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQG  152 (189)
T ss_dssp             HHHHHHHHHHHHHHHTTCSC-------------CCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            99999999999988765444             9999999999986 456778889999999999999999999986

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=6.2e-33  Score=183.45  Aligned_cols=142  Identities=35%  Similarity=0.521  Sum_probs=129.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++|||++++
T Consensus        11 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   90 (168)
T 1z2a_A           11 VGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDR   90 (168)
T ss_dssp             ECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCH
T ss_pred             ECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCH
Confidence            69999999999999999988888888888544 77778888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.....  .             .|+++|+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus        91 ~s~~~~~~~~~~i~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (168)
T 1z2a_A           91 ESFEAISSWREKVVAEVG--D-------------IPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLN  153 (168)
T ss_dssp             HHHHTHHHHHHHHHHHHC--S-------------CCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred             HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCC
Confidence            999999999998887762  2             99999999999987778888999999999999999999999986

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-32  Score=184.39  Aligned_cols=143  Identities=30%  Similarity=0.526  Sum_probs=120.4

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   78 (157)
                      +|++|||||||+++|+++.+. ..+.+|++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||+++
T Consensus        16 ~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~   95 (180)
T 2g6b_A           16 VGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTN   95 (180)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTC
T ss_pred             ECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCC
Confidence            699999999999999998884 46778888666 5556789988999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +.+++.+..|+..+.......              .|+++|+||+|+...+.+..+++..+++.++++++++||++|+|
T Consensus        96 ~~s~~~~~~~~~~i~~~~~~~--------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  160 (180)
T 2g6b_A           96 KASFDNIQAWLTEIHEYAQHD--------------VALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLN  160 (180)
T ss_dssp             HHHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred             HHHHHHHHHHHHHHHHhCCCC--------------CcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            999999999998887765422              99999999999988788888999999999999999999999986

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.8e-33  Score=189.46  Aligned_cols=143  Identities=36%  Similarity=0.557  Sum_probs=130.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++. ..++..+++.+|++|+|||+++++
T Consensus        34 ~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~  112 (196)
T 2atv_A           34 FGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRG  112 (196)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHH
Confidence            6999999999999999999988888998877777788899999999999999988 778899999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCC-C
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD-Y  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~-~  157 (157)
                      +++.+..|+..+........             +|++||+||+|+...+.+..+++..+++.++++++++||++|+ |
T Consensus       113 s~~~~~~~~~~i~~~~~~~~-------------~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~g  177 (196)
T 2atv_A          113 SFEEVLPLKNILDEIKKPKN-------------VTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGN  177 (196)
T ss_dssp             HHHTHHHHHHHHHHHHTTSC-------------CCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTC
T ss_pred             HHHHHHHHHHHHHHhhCCCC-------------CcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcC
Confidence            99999999998887654333             9999999999998778888899999999999999999999998 5

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=3.6e-33  Score=187.70  Aligned_cols=143  Identities=30%  Similarity=0.465  Sum_probs=128.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus        16 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   95 (186)
T 2bme_A           16 IGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR   95 (186)
T ss_dssp             EESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCH
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCH
Confidence            69999999999999999998888888888554 67778888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              +|+++|+||+|+...+.+...++..++...+++++++||++|+|
T Consensus        96 ~s~~~~~~~~~~~~~~~~~~--------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  159 (186)
T 2bme_A           96 ETYNALTNWLTDARMLASQN--------------IVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEN  159 (186)
T ss_dssp             HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence            99999999998887654432              99999999999977778888999999999999999999999986

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=2.9e-33  Score=188.36  Aligned_cols=142  Identities=24%  Similarity=0.424  Sum_probs=124.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++.+..++..+++.+|++|+|||+++++
T Consensus        13 ~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   92 (184)
T 1m7b_A           13 VGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE   92 (184)
T ss_dssp             EESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHH
Confidence            69999999999999999999888889988777777788888999999999999999999999999999999999999999


Q ss_pred             hHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhC-Cc
Q psy1873          81 SFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWK-AG  146 (157)
Q Consensus        81 s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~  146 (157)
                      +++.+ ..|+..+.....  .             +|+++||||+|+.+.            +.+..+++..+++.++ ++
T Consensus        93 s~~~~~~~~~~~i~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (184)
T 1m7b_A           93 TLDSVLKKWKGEIQEFCP--N-------------TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT  157 (184)
T ss_dssp             HHHHHHHTHHHHHHHHCT--T-------------CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             HHHHHHHHHHHHHHHHCC--C-------------CCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence            99998 678777765432  2             999999999999642            5688899999999998 69


Q ss_pred             EEEeccc-cCCC
Q psy1873         147 FVEASAK-QDDY  157 (157)
Q Consensus       147 ~~e~Sa~-~~~~  157 (157)
                      |++|||+ +|+|
T Consensus       158 ~~e~Sa~~~~~g  169 (184)
T 1m7b_A          158 YIECSALQSENS  169 (184)
T ss_dssp             EEECBTTTBHHH
T ss_pred             EEEeeecCCCcC
Confidence            9999999 5643

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.3e-33  Score=188.27  Aligned_cols=143  Identities=32%  Similarity=0.415  Sum_probs=128.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus        29 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~  108 (192)
T 2fg5_A           29 LGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQ  108 (192)
T ss_dssp             EECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCT
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCH
Confidence            69999999999999999998878888888665 56677788889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              +|+++|+||+|+.+.+.+..++++.+++..+++++++||++|+|
T Consensus       109 ~s~~~~~~~~~~i~~~~~~~--------------~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g  172 (192)
T 2fg5_A          109 DSFYTLKKWVKELKEHGPEN--------------IVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAIN  172 (192)
T ss_dssp             HHHHHHHHHHHHHHHHSCTT--------------CEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBS
T ss_pred             HHHHHHHHHHHHHHHhCCCC--------------CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcC
Confidence            99999999998887665322              99999999999977678888999999999999999999999986

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=5.6e-33  Score=184.01  Aligned_cols=142  Identities=34%  Similarity=0.585  Sum_probs=121.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus         9 ~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   88 (170)
T 1g16_A            9 IGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDE   88 (170)
T ss_dssp             EESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCH
T ss_pred             ECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCH
Confidence            69999999999999999988877888888555 66777888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              .|+++|+||+|+ ..+.+..+++..+++.++++++++||++|+|
T Consensus        89 ~s~~~~~~~~~~i~~~~~~~--------------~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  151 (170)
T 1g16_A           89 RTFTNIKQWFKTVNEHANDE--------------AQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN  151 (170)
T ss_dssp             HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBS
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence            99999999998887765332              999999999999 5567778889999999999999999999986

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-33  Score=191.70  Aligned_cols=143  Identities=29%  Similarity=0.423  Sum_probs=121.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus        19 ~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~   98 (223)
T 3cpj_B           19 IGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKS   98 (223)
T ss_dssp             ESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCH
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCH
Confidence            69999999999999999998878888888555 66778889889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              +|++||+||+|+...+.+..+++..+++.++++++++||++|+|
T Consensus        99 ~s~~~~~~~l~~i~~~~~~~--------------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g  162 (223)
T 3cpj_B           99 SSYENCNHWLSELRENADDN--------------VAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSEN  162 (223)
T ss_dssp             HHHHHHHHHHHHHHHHCC----------------CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCC
T ss_pred             HHHHHHHHHHHHHHHhCCCC--------------CeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            99999999999887664322              99999999999987778888999999999999999999999986

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=9.5e-33  Score=184.28  Aligned_cols=143  Identities=37%  Similarity=0.505  Sum_probs=129.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus        20 ~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   99 (179)
T 2y8e_A           20 LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNT   99 (179)
T ss_dssp             EESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCH
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCH
Confidence            69999999999999999988888888887444 67778899889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              +|+++|+||+|+.+.+.+...++..++...+++++++||++|+|
T Consensus       100 ~s~~~~~~~~~~i~~~~~~~--------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  163 (179)
T 2y8e_A          100 NSFHQTSKWIDDVRTERGSD--------------VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN  163 (179)
T ss_dssp             HHHHTHHHHHHHHHHHHTTS--------------SEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBS
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            99999999999887765432              99999999999987788888999999999999999999999986

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=186.55  Aligned_cols=143  Identities=29%  Similarity=0.456  Sum_probs=128.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus        31 ~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~  110 (193)
T 2oil_A           31 IGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKH  110 (193)
T ss_dssp             ESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCH
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCH
Confidence            69999999999999999998877888888655 56777888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              .|+++|+||+|+...+.+...++..+++..+++++++||++|+|
T Consensus       111 ~s~~~~~~~l~~i~~~~~~~--------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  174 (193)
T 2oil_A          111 QTYAVVERWLKELYDHAEAT--------------IVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTN  174 (193)
T ss_dssp             HHHHTHHHHHHHHHTTSCTT--------------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            99999999998887654322              99999999999987778888999999999999999999999986

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=4e-33  Score=191.42  Aligned_cols=142  Identities=32%  Similarity=0.476  Sum_probs=124.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++++|++|+|||+++++
T Consensus        15 ~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~   94 (212)
T 2j0v_A           15 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKA   94 (212)
T ss_dssp             EESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHH
Confidence            69999999999999999999888889999888777788898899999999999999999999999999999999999999


Q ss_pred             hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce--------ecHHHHHHHHHHhCC-cEEEe
Q psy1873          81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM--------ISYDEGKRLAESWKA-GFVEA  150 (157)
Q Consensus        81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~e~  150 (157)
                      +++.+. .|+..+.....  .             +|++||+||+|+...+.        +..+++..+++.+++ +|+++
T Consensus        95 s~~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  159 (212)
T 2j0v_A           95 SYENVLKKWMPELRRFAP--N-------------VPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIEC  159 (212)
T ss_dssp             HHHHHHHTHHHHHHHHCT--T-------------CCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEc
Confidence            999996 78777765532  2             99999999999866544        377889999999996 99999


Q ss_pred             ccccCCC
Q psy1873         151 SAKQDDY  157 (157)
Q Consensus       151 Sa~~~~~  157 (157)
                      ||++|+|
T Consensus       160 Sa~~g~g  166 (212)
T 2j0v_A          160 SSKTQQN  166 (212)
T ss_dssp             CTTTCTT
T ss_pred             cCCCCCC
Confidence            9999986

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=1.3e-32  Score=184.80  Aligned_cols=142  Identities=29%  Similarity=0.445  Sum_probs=127.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+++||++|++++..++..+++.+|++|+|||++++.
T Consensus        11 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~   90 (186)
T 1mh1_A           11 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPA   90 (186)
T ss_dssp             ECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChh
Confidence            69999999999999999999888889988878778888999999999999999999999999999999999999999999


Q ss_pred             hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-c
Q psy1873          81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-G  146 (157)
Q Consensus        81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~  146 (157)
                      +++.+. .|+..+.....  .             .|+++|+||+|+.+.            +.+..+++..+++.+++ +
T Consensus        91 s~~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  155 (186)
T 1mh1_A           91 SFENVRAKWYPEVRHHCP--N-------------TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK  155 (186)
T ss_dssp             HHHHHHHTHHHHHHHHST--T-------------SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             hHHHHHHHHHHHHHHhCC--C-------------CCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcE
Confidence            999997 67777765533  2             999999999998653            56788889999999997 9


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      ++++||++|+|
T Consensus       156 ~~~~Sa~~g~g  166 (186)
T 1mh1_A          156 YLECSALTQRG  166 (186)
T ss_dssp             EEECCTTTCTT
T ss_pred             EEEecCCCccC
Confidence            99999999986

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.8e-33  Score=189.69  Aligned_cols=143  Identities=29%  Similarity=0.466  Sum_probs=119.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus        31 ~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  110 (200)
T 2o52_A           31 IGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR  110 (200)
T ss_dssp             EESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCH
T ss_pred             ECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCH
Confidence            69999999999999999998878888888554 67778888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              +|++||+||+|+...+.+...++..+++..+++++++||++|+|
T Consensus       111 ~s~~~~~~~~~~~~~~~~~~--------------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g  174 (200)
T 2o52_A          111 ETYNSLAAWLTDARTLASPN--------------IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGEN  174 (200)
T ss_dssp             HHHHTHHHHHHHHHHHTCTT--------------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            99999999998887765432              99999999999987778888999999999999999999999986

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-33  Score=191.38  Aligned_cols=143  Identities=34%  Similarity=0.528  Sum_probs=129.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++|+|||++++
T Consensus        29 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  108 (191)
T 3dz8_A           29 IGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE  108 (191)
T ss_dssp             EESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCH
T ss_pred             ECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCH
Confidence            69999999999999999998888888887554 67777888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              +|++||+||+|+.+.+.+..++++.+++.++++++++||++|+|
T Consensus       109 ~s~~~~~~~~~~i~~~~~~~--------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  172 (191)
T 3dz8_A          109 ESFNAVQDWATQIKTYSWDN--------------AQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENIS  172 (191)
T ss_dssp             HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence            99999999998887754332              99999999999988888999999999999999999999999986

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.4e-32  Score=184.09  Aligned_cols=143  Identities=33%  Similarity=0.479  Sum_probs=127.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus        21 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~  100 (195)
T 1x3s_A           21 IGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRR  100 (195)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCH
T ss_pred             ECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCH
Confidence            69999999999999999998888888888555 67778889999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+........             +|+++|+||+|+. .+.+..+++..+++.++++++++||++|+|
T Consensus       101 ~s~~~~~~~~~~i~~~~~~~~-------------~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (195)
T 1x3s_A          101 DTFVKLDNWLNELETYCTRND-------------IVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDG  164 (195)
T ss_dssp             HHHHTHHHHHHHHTTCCSCSC-------------CEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred             HHHHHHHHHHHHHHHhcCcCC-------------CcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence            999999999888866543223             9999999999994 466778889999999999999999999986

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=8.5e-32  Score=181.75  Aligned_cols=143  Identities=38%  Similarity=0.630  Sum_probs=118.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|.+..+...+.+++..+.+.+||++|++++..++..+++.++++++|||++++.
T Consensus        27 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~  106 (190)
T 3con_A           27 VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSK  106 (190)
T ss_dssp             ECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHH
T ss_pred             ECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHH
Confidence            69999999999999999988888888888777778888999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..+........             +|+++|+||+|+.. +.+..+++..+++.++++++++||++|+|
T Consensus       107 s~~~~~~~~~~i~~~~~~~~-------------~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  169 (190)
T 3con_A          107 SFADINLYREQIKRVKDSDD-------------VPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQG  169 (190)
T ss_dssp             HHHHHHHHHHHHHHHHTCSC-------------CCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred             HHHHHHHHHHHHHHHhCCCC-------------CeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            99999999988877665333             99999999999865 56778889999999999999999999986

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=8.8e-33  Score=189.25  Aligned_cols=141  Identities=24%  Similarity=0.429  Sum_probs=124.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|+++|..++..+++.+|++|+|||+++++
T Consensus        34 vG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~  113 (205)
T 1gwn_A           34 VGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE  113 (205)
T ss_dssp             EESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHH
Confidence            69999999999999999999888889988777777788888899999999999999999999999999999999999999


Q ss_pred             hHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhC-Cc
Q psy1873          81 SFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM------------ERMISYDEGKRLAESWK-AG  146 (157)
Q Consensus        81 s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~  146 (157)
                      +|+.+ ..|+..+.....  .             .|++|||||+|+.+            .+.+..+++..+++.++ ++
T Consensus       114 s~~~~~~~~~~~i~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  178 (205)
T 1gwn_A          114 TLDSVLKKWKGEIQEFCP--N-------------TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT  178 (205)
T ss_dssp             HHHHHHHTHHHHHHHHCT--T-------------CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             HHHHHHHHHHHHHHHHCC--C-------------CCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCE
Confidence            99999 678777765432  2             99999999999964            25688889999999988 69


Q ss_pred             EEEeccc-cCC
Q psy1873         147 FVEASAK-QDD  156 (157)
Q Consensus       147 ~~e~Sa~-~~~  156 (157)
                      |++|||+ +|+
T Consensus       179 ~~e~SAk~~~~  189 (205)
T 1gwn_A          179 YIECSALQSEN  189 (205)
T ss_dssp             EEECCTTTCHH
T ss_pred             EEEeeeccCCc
Confidence            9999999 554

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=5.5e-32  Score=180.50  Aligned_cols=146  Identities=25%  Similarity=0.373  Sum_probs=124.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++|||++++
T Consensus        13 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   92 (177)
T 1wms_A           13 LGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDS   92 (177)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCH
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCH
Confidence            69999999999999999998888888888655 67778899889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-HhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE-SWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+........          ...+|+++|+||+|+. .+.+..+++..+++ ..+++++++||++|+|
T Consensus        93 ~s~~~~~~~~~~~~~~~~~~~----------~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  160 (177)
T 1wms_A           93 QSFQNLSNWKKEFIYYADVKE----------PESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATN  160 (177)
T ss_dssp             HHHHTHHHHHHHHHHHHTCSC----------TTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTT
T ss_pred             HHHHHHHHHHHHHHHHccccc----------cCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence            999999999999887654210          1238999999999996 56778888999988 5668999999999986

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.8e-32  Score=181.72  Aligned_cols=145  Identities=37%  Similarity=0.641  Sum_probs=129.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.++++..+...+..++..+.+.+||++|++++..++..+++.+|++++|||++++.
T Consensus         9 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   88 (172)
T 2erx_A            9 FGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQ   88 (172)
T ss_dssp             ECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHH
Confidence            69999999999999999988878888888777777788888899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..+......            ....|+++|+||+|+.+.+.+...++..++...+++++++||++|+|
T Consensus        89 ~~~~~~~~~~~i~~~~~~------------~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g  153 (172)
T 2erx_A           89 SLEELKPIYEQICEIKGD------------VESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHN  153 (172)
T ss_dssp             HHHTTHHHHHHHHHHHC---------------CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred             HHHHHHHHHHHHHHHhCC------------CCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcC
Confidence            999999998888776532            11289999999999987778888889999999999999999999986

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=4.4e-32  Score=183.99  Aligned_cols=143  Identities=28%  Similarity=0.387  Sum_probs=116.7

Q ss_pred             CCCCCCChhhhHhhhhccc--ccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCcc-CcCchhhhccCCCEEEEEEEC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ--FVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDE-YSIFPAQYSMDIHGYVLVYSI   76 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~--~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~~ilv~d~   76 (157)
                      ||++|||||||+++|++..  +...+.+ ++ +.+...+.+++..+.+.+||++|++. +..+...+++.++++++|||+
T Consensus        12 vG~~~vGKSsL~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv   90 (192)
T 2cjw_A           12 IGEQGVGKSTLANIFAGVHDSMDSDXEV-LGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSI   90 (192)
T ss_dssp             ECSTTSSHHHHHHHHHHHSCCC----GG-GCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEET
T ss_pred             ECCCCCCHHHHHHHHhcCcCCcCccccc-cceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEEC
Confidence            6999999999999999643  3444433 44 44577788999999999999999876 566788889999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCC
Q psy1873          77 TSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD  156 (157)
Q Consensus        77 ~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  156 (157)
                      +++++|+.+..|+..+........             +|+++|+||+|+...+.+..+++..++..++++|+||||++|+
T Consensus        91 ~~~~s~~~~~~~~~~l~~~~~~~~-------------~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~  157 (192)
T 2cjw_A           91 TDRASFEKASELRIQLRRARQTED-------------IPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQH  157 (192)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTTSC-------------CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred             CCHHHHHHHHHHHHHHHHhhCCCC-------------CeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCC
Confidence            999999999999888776543223             8999999999997777888888999999999999999999998


Q ss_pred             C
Q psy1873         157 Y  157 (157)
Q Consensus       157 ~  157 (157)
                      |
T Consensus       158 ~  158 (192)
T 2cjw_A          158 N  158 (192)
T ss_dssp             S
T ss_pred             C
Confidence            6

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=189.52  Aligned_cols=142  Identities=32%  Similarity=0.565  Sum_probs=105.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++++|++|+|||++++.
T Consensus        40 vG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~  119 (214)
T 2j1l_A           40 VGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPN  119 (214)
T ss_dssp             EECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHH
T ss_pred             ECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHH
Confidence            69999999999999999998888888888777778888999999999999999999999999999999999999999999


Q ss_pred             hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhCC-c
Q psy1873          81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER------------MISYDEGKRLAESWKA-G  146 (157)
Q Consensus        81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~  146 (157)
                      +++.+. .|+..+.....  .             +|++||+||+|+...+            .+..+++..+++.+++ +
T Consensus       120 s~~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  184 (214)
T 2j1l_A          120 SFDNIFNRWYPEVNHFCK--K-------------VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVA  184 (214)
T ss_dssp             HHHHHHHTHHHHHHHHCS--S-------------CCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCE
Confidence            999996 67777765432  2             8999999999997643            6778889999999998 9


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      ++++||++|+|
T Consensus       185 ~~~~SA~~g~g  195 (214)
T 2j1l_A          185 YLECSARLHDN  195 (214)
T ss_dssp             EEECBTTTTBS
T ss_pred             EEEecCCCCCC
Confidence            99999999986

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.7e-33  Score=187.26  Aligned_cols=143  Identities=31%  Similarity=0.513  Sum_probs=120.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus        32 vG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~  111 (192)
T 2il1_A           32 IGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKK  111 (192)
T ss_dssp             ECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCH
Confidence            69999999999999999988877888887554 67778888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW-KAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              .|++||+||+|+.+.+.+..++++.+++.. +++++++||++|+|
T Consensus       112 ~s~~~~~~~~~~i~~~~~~~--------------~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g  176 (192)
T 2il1_A          112 ETFDDLPKWMKMIDKYASED--------------AELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFN  176 (192)
T ss_dssp             HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBS
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCC
Confidence            99999999988776554322              999999999999877788888999999885 78999999999986

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=6.6e-32  Score=177.80  Aligned_cols=143  Identities=37%  Similarity=0.608  Sum_probs=129.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++++++.+...+.++.+..+...+..++..+.+.+||++|++++..++..++..+|++++|||++++.
T Consensus         9 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   88 (166)
T 2ce2_X            9 VGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK   88 (166)
T ss_dssp             EESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHH
Confidence            59999999999999999988888888888777777888898999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..+........             .|+++|+||+|+.+ +.+..+++..+++.++++++++||++|+|
T Consensus        89 ~~~~~~~~~~~i~~~~~~~~-------------~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  151 (166)
T 2ce2_X           89 SFEDIHQYREQIKRVKDSDD-------------VPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQG  151 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTCSC-------------CCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTT
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------CcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCC
Confidence            99999999999887765433             99999999999866 56778889999999999999999999986

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=4.2e-32  Score=185.09  Aligned_cols=142  Identities=32%  Similarity=0.520  Sum_probs=125.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++.+|++|+|||+++++
T Consensus        31 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~  110 (201)
T 2gco_A           31 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD  110 (201)
T ss_dssp             EESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHH
Confidence            69999999999999999999888889988777667788999999999999999999999999999999999999999999


Q ss_pred             hHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-c
Q psy1873          81 SFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-G  146 (157)
Q Consensus        81 s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~  146 (157)
                      +++.+ ..|+..+.....  .             .|+++|+||+|+.+.            +.+..+++..+++..++ +
T Consensus       111 s~~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  175 (201)
T 2gco_A          111 SLENIPEKWTPEVKHFCP--N-------------VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFG  175 (201)
T ss_dssp             HHHHHHHTHHHHHHHHST--T-------------CCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcE
Confidence            99999 566666655432  2             999999999999764            45788889999999998 9


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      ++++||++|+|
T Consensus       176 ~~~~SA~~g~g  186 (201)
T 2gco_A          176 YLECSAKTKEG  186 (201)
T ss_dssp             EEECCTTTCTT
T ss_pred             EEEeeCCCCCC
Confidence            99999999986

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=1e-32  Score=187.85  Aligned_cols=143  Identities=32%  Similarity=0.487  Sum_probs=118.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus        34 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~  113 (199)
T 2p5s_A           34 AGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCE  113 (199)
T ss_dssp             ESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred             ECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCCh
Confidence            69999999999999999988877788888554 67778899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC------CCceecHHHHHHHHHHhCCcEEEeccc
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH------MERMISYDEGKRLAESWKAGFVEASAK  153 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~e~Sa~  153 (157)
                      .+++.+..|+..+.......              +|++||+||+|+.      ..+.+..+++..+++..+++++++||+
T Consensus       114 ~s~~~~~~~~~~i~~~~~~~--------------~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~  179 (199)
T 2p5s_A          114 KSFLNIREWVDMIEDAAHET--------------VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAK  179 (199)
T ss_dssp             HHHHTHHHHHHHHHHHC-----------------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTT
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCC
Confidence            99999999988876654322              9999999999985      456788889999999999999999999


Q ss_pred             cCCC
Q psy1873         154 QDDY  157 (157)
Q Consensus       154 ~~~~  157 (157)
                      +|+|
T Consensus       180 ~g~g  183 (199)
T 2p5s_A          180 DGSN  183 (199)
T ss_dssp             TCTT
T ss_pred             CCCC
Confidence            9986

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=3.9e-32  Score=183.45  Aligned_cols=144  Identities=29%  Similarity=0.447  Sum_probs=127.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEE--EEEEECCe---------EEEEEEEeCCCCccCcCchhhhccCCCE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV--KTTRMNNQ---------DYDLKLVDTAGQDEYSIFPAQYSMDIHG   69 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~---------~~~~~i~D~~g~~~~~~~~~~~~~~~~~   69 (157)
                      +|++|||||||+++|+++.+...+.+|++..+.  ..+..++.         .+.+.+||++|++++..++..+++.+|+
T Consensus        17 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   96 (195)
T 3bc1_A           17 LGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMG   96 (195)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCE
Confidence            699999999999999999988888888886553  45555655         7899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEE
Q psy1873          70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVE  149 (157)
Q Consensus        70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e  149 (157)
                      +|+|||++++.+++.+..|+..+........             +|+++|+||+|+.+.+.+..+++..++..+++++++
T Consensus        97 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  163 (195)
T 3bc1_A           97 FLLLFDLTNEQSFLNVRNWISQLQMHAYSEN-------------PDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFE  163 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSSSSS-------------CCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECcccccccccCHHHHHHHHHHcCCCEEE
Confidence            9999999999999999999998887764333             999999999999877788889999999999999999


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      +||++|+|
T Consensus       164 ~Sa~~~~~  171 (195)
T 3bc1_A          164 TSAANGTN  171 (195)
T ss_dssp             CCTTTCTT
T ss_pred             EECCCCCC
Confidence            99999986

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=8.4e-32  Score=184.65  Aligned_cols=142  Identities=34%  Similarity=0.586  Sum_probs=127.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|++..+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++|+|||++++
T Consensus        26 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~  105 (213)
T 3cph_A           26 IGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDE  105 (213)
T ss_dssp             ECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCH
T ss_pred             ECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCH
Confidence            69999999999999999988878888888555 67778889889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              +|+++|+||+|+ ..+.+..+++..++..++++++++||++|+|
T Consensus       106 ~s~~~~~~~~~~i~~~~~~~--------------~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  168 (213)
T 3cph_A          106 RTFTNIKQWFKTVNEHANDE--------------AQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN  168 (213)
T ss_dssp             HHHHTHHHHHHHHHHHTTTC--------------SEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBS
T ss_pred             HHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            99999999998887765432              999999999999 5567778889999999999999999999986

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=2.7e-33  Score=187.64  Aligned_cols=142  Identities=31%  Similarity=0.480  Sum_probs=109.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++++|++++|||++++.
T Consensus        14 ~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~   93 (182)
T 3bwd_D           14 VGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA   93 (182)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHH
Confidence            69999999999999999988888888888666555667777888999999999999999999999999999999999999


Q ss_pred             hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce----------ecHHHHHHHHHHhCC-cEE
Q psy1873          81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM----------ISYDEGKRLAESWKA-GFV  148 (157)
Q Consensus        81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~  148 (157)
                      +++.+. .|+..+.....  .             .|+++|+||+|+.+.+.          +..+++..+++.+++ +++
T Consensus        94 s~~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  158 (182)
T 3bwd_D           94 SYENVSKKWIPELKHYAP--G-------------VPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYI  158 (182)
T ss_dssp             HHHHHHHTHHHHHHHHCT--T-------------CCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEE
Confidence            999997 67777765532  2             99999999999866544          477889999999997 999


Q ss_pred             EeccccCCC
Q psy1873         149 EASAKQDDY  157 (157)
Q Consensus       149 e~Sa~~~~~  157 (157)
                      ++||++|+|
T Consensus       159 ~~Sa~~~~g  167 (182)
T 3bwd_D          159 ECSSKSQEN  167 (182)
T ss_dssp             ECCTTTCTT
T ss_pred             EEECCCCCC
Confidence            999999986

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=2.7e-32  Score=186.59  Aligned_cols=142  Identities=28%  Similarity=0.457  Sum_probs=124.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++.
T Consensus        36 vG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~  115 (204)
T 4gzl_A           36 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPA  115 (204)
T ss_dssp             EESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH
T ss_pred             ECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHH
Confidence            69999999999999999999888889988888888888999999999999999999999999999999999999999999


Q ss_pred             hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce------------ecHHHHHHHHHHhCC-c
Q psy1873          81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM------------ISYDEGKRLAESWKA-G  146 (157)
Q Consensus        81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~-~  146 (157)
                      +++.+. .|+..+.....  .             .|+++|+||+|+...+.            +...++..+++..++ +
T Consensus       116 s~~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  180 (204)
T 4gzl_A          116 SFENVRAKWYPEVRHHCP--N-------------TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK  180 (204)
T ss_dssp             HHHHHHHTHHHHHHHHCS--S-------------CCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcE
Confidence            999997 67766665542  2             99999999999865443            778889999999997 6


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      ++++||++|+|
T Consensus       181 ~~~~SA~~g~g  191 (204)
T 4gzl_A          181 YLECSALTQRG  191 (204)
T ss_dssp             EEECCTTTCTT
T ss_pred             EEEeeCCCCCC
Confidence            99999999987

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1e-31  Score=183.99  Aligned_cols=142  Identities=30%  Similarity=0.486  Sum_probs=119.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++.+|++|+|||+++++
T Consensus        31 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~  110 (207)
T 2fv8_A           31 VGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPD  110 (207)
T ss_dssp             EECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHH
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHH
Confidence            69999999999999999998888888888777666788999999999999999999999999999999999999999999


Q ss_pred             hHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-c
Q psy1873          81 SFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-G  146 (157)
Q Consensus        81 s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~  146 (157)
                      +++.+ ..|+..+.....  .             .|+++|+||+|+...            +.+..+++..++...++ +
T Consensus       111 s~~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  175 (207)
T 2fv8_A          111 SLENIPEKWVPEVKHFCP--N-------------VPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYD  175 (207)
T ss_dssp             HHHHHHHTHHHHHHHHST--T-------------CCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCE
Confidence            99999 567666655432  2             999999999999654            45778889999999998 9


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      ++++||++|+|
T Consensus       176 ~~~~SA~~g~g  186 (207)
T 2fv8_A          176 YLECSAKTKEG  186 (207)
T ss_dssp             EEECCTTTCTT
T ss_pred             EEEeeCCCCCC
Confidence            99999999986

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=1.4e-32  Score=187.78  Aligned_cols=146  Identities=27%  Similarity=0.365  Sum_probs=92.7

Q ss_pred             CCCCCCChhhhHhhhhcc--cccccccCCcc-ceEEEEEEECCe--EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDG--QFVDSYDPTIE-NTFVKTTRMNNQ--DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYS   75 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~--~~~~~~~~t~~-~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d   75 (157)
                      +|++|||||||+++|+++  .+...+.+|++ +.+...+.+++.  .+.+.+||++|++++..++..+++.+|++|+|||
T Consensus        26 ~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d  105 (208)
T 2yc2_C           26 VGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFD  105 (208)
T ss_dssp             C----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEE
T ss_pred             ECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEE
Confidence            699999999999999998  77778888887 444677788877  8899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC-CceecHHHHHHHHHHhCCcEEEecccc
Q psy1873          76 ITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM-ERMISYDEGKRLAESWKAGFVEASAKQ  154 (157)
Q Consensus        76 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~  154 (157)
                      ++++.+++.+..|+..+.......           ...+|++||+||+|+.. .+.+..+++..+++.++++++++||++
T Consensus       106 ~~~~~s~~~~~~~~~~i~~~~~~~-----------~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  174 (208)
T 2yc2_C          106 VSSMESFESCKAWFELLKSARPDR-----------ERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANP  174 (208)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCSCT-----------TSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC--
T ss_pred             CCCHHHHHHHHHHHHHHHHhhccc-----------ccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCC
Confidence            999999999999999988765410           01299999999999987 778888999999999999999999999


Q ss_pred             -CCC
Q psy1873         155 -DDY  157 (157)
Q Consensus       155 -~~~  157 (157)
                       |+|
T Consensus       175 ~~~g  178 (208)
T 2yc2_C          175 PGKD  178 (208)
T ss_dssp             ----
T ss_pred             CCcC
Confidence             875

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=2.3e-31  Score=180.89  Aligned_cols=140  Identities=24%  Similarity=0.371  Sum_probs=123.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeE-------------------------------------
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQD-------------------------------------   42 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~-------------------------------------   42 (157)
                      +|++|||||||+++|++..+...+.+|++..+ ...+.+++..                                     
T Consensus        13 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (208)
T 3clv_A           13 LGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCN   92 (208)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CCCTTTCE
T ss_pred             ECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccCccce
Confidence            69999999999999999999888888888555 5556666654                                     


Q ss_pred             EEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeC
Q psy1873          43 YDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK  122 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK  122 (157)
                      +.+.+||++|++.+..++..+++.+|++|+|||++++.+++.+..|+..+.....                .|+++|+||
T Consensus        93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----------------~piilv~NK  156 (208)
T 3clv_A           93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----------------YIIILVANK  156 (208)
T ss_dssp             EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----------------CEEEEEEEC
T ss_pred             eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----------------CcEEEEEEC
Confidence            8899999999999999999999999999999999999999999999988876542                899999999


Q ss_pred             CCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873         123 KDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus       123 ~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +| ...+.+..+++..+++.++++++++||++|+|
T Consensus       157 ~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  190 (208)
T 3clv_A          157 ID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTN  190 (208)
T ss_dssp             TT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred             CC-cccccCCHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            99 55677888999999999999999999999986

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.98  E-value=3e-31  Score=181.18  Aligned_cols=146  Identities=26%  Similarity=0.427  Sum_probs=126.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|++..+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..+++++|++|+|||++++
T Consensus        14 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   93 (207)
T 1vg8_A           14 LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAP   93 (207)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCH
T ss_pred             ECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCH
Confidence            69999999999999999998888888887544 66777888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-HhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE-SWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+........          ....|+++|+||+|+. .+.+..+++..++. ..+++++++||++|+|
T Consensus        94 ~s~~~~~~~~~~~~~~~~~~~----------~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  161 (207)
T 1vg8_A           94 NTFKTLDSWRDEFLIQASPRD----------PENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAIN  161 (207)
T ss_dssp             HHHHTHHHHHHHHHHHHCCSS----------GGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBS
T ss_pred             HHHHHHHHHHHHHHHhccccc----------CCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence            999999999998887764210          1128999999999997 55677788888887 6678999999999986

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.98  E-value=1.5e-32  Score=189.21  Aligned_cols=144  Identities=28%  Similarity=0.448  Sum_probs=125.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCe----------EEEEEEEeCCCCccCcCchhhhccCCCE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQ----------DYDLKLVDTAGQDEYSIFPAQYSMDIHG   69 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~----------~~~~~i~D~~g~~~~~~~~~~~~~~~~~   69 (157)
                      +|++|||||||+++|+++.+...+.+|++..+ ...+.+++.          .+.+.+||++|++++..++..+++.+|+
T Consensus        31 vG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  110 (217)
T 2f7s_A           31 LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMG  110 (217)
T ss_dssp             ESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCE
T ss_pred             ECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCE
Confidence            69999999999999999988877888887555 556667665          7889999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEE
Q psy1873          70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVE  149 (157)
Q Consensus        70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e  149 (157)
                      +|+|||++++.+++.+..|+..+......             ..+|++||+||+|+...+.+..+++..+++.+++++++
T Consensus       111 iilV~D~~~~~s~~~~~~~l~~i~~~~~~-------------~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~  177 (217)
T 2f7s_A          111 FLLMFDLTSQQSFLNVRNWMSQLQANAYC-------------ENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFE  177 (217)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHTCCCCCTT-------------TCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEE
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCc-------------CCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEE
Confidence            99999999999999999888776544321             22999999999999877788889999999999999999


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      +||++|+|
T Consensus       178 ~Sa~~g~g  185 (217)
T 2f7s_A          178 TSAATGQN  185 (217)
T ss_dssp             EBTTTTBT
T ss_pred             EECCCCCC
Confidence            99999986

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=1.7e-31  Score=181.30  Aligned_cols=144  Identities=34%  Similarity=0.612  Sum_probs=127.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+..++..+.+.+||++|++++..++..+++.+|++++|||++++.
T Consensus        14 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~   93 (199)
T 2gf0_A           14 FGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQ   93 (199)
T ss_dssp             EECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHH
Confidence            69999999999999999998888888888777777788888999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..+.......            ...|+++|+||+|+.+ +.+...++..++..++++++++||++|+|
T Consensus        94 s~~~~~~~~~~i~~~~~~~------------~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  157 (199)
T 2gf0_A           94 SLEELGPIYKLIVQIKGSV------------EDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYN  157 (199)
T ss_dssp             HHHTTHHHHHHHHHHHSCG------------GGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred             HHHHHHHHHHHHHHHhcCC------------CCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCC
Confidence            9999998888777654320            1289999999999965 56778889999999999999999999986

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.98  E-value=1.4e-31  Score=179.08  Aligned_cols=147  Identities=27%  Similarity=0.414  Sum_probs=112.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEEC-CeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMN-NQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   78 (157)
                      +|++|||||||+++|+++.+...+.++++..+ ...+.++ +..+.+.+||++|++.+..++..+++.+|++|+|||+++
T Consensus        14 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~   93 (182)
T 1ky3_A           14 LGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTN   93 (182)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTC
T ss_pred             ECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCC
Confidence            69999999999999999998888888887443 5666666 567889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC-CceecHHHHHHHHH-HhCCcEEEeccccCC
Q psy1873          79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM-ERMISYDEGKRLAE-SWKAGFVEASAKQDD  156 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~  156 (157)
                      +.+++.+..|+..+........          ...+|+++|+||+|+.. .+.+..+++..+++ ..+++++++||++|+
T Consensus        94 ~~s~~~~~~~~~~~~~~~~~~~----------~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (182)
T 1ky3_A           94 ASSFENIKSWRDEFLVHANVNS----------PETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI  163 (182)
T ss_dssp             HHHHHTHHHHHHHHHHHHCCSC----------TTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred             hHHHHHHHHHHHHHHHHhcccC----------cCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence            9999999999999887664210          12389999999999953 45677888999988 456899999999998


Q ss_pred             C
Q psy1873         157 Y  157 (157)
Q Consensus       157 ~  157 (157)
                      |
T Consensus       164 g  164 (182)
T 1ky3_A          164 N  164 (182)
T ss_dssp             S
T ss_pred             C
Confidence            6

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.98  E-value=1.7e-31  Score=184.04  Aligned_cols=143  Identities=23%  Similarity=0.333  Sum_probs=122.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEE-CCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRM-NNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   78 (157)
                      +|++|||||||+++|+++.+...+.+|.+..+ ...... ++..+.+.+||++|++.+..++..++..+|++|+|||+++
T Consensus        17 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~   96 (218)
T 4djt_A           17 IGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTS   96 (218)
T ss_dssp             ECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTC
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCC
Confidence            69999999999999999888888888887555 333333 3344889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +.+++.+..|+..+.......              .|+++|+||+|+.+.+.+...++..++...+++++++||++|+|
T Consensus        97 ~~s~~~~~~~~~~~~~~~~~~--------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  161 (218)
T 4djt_A           97 RITCQNLARWVKEFQAVVGNE--------------APIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN  161 (218)
T ss_dssp             HHHHHTHHHHHHHHHHHHCSS--------------SCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBT
T ss_pred             HHHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            999999999999988776543              89999999999988778888999999999999999999999986

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.97  E-value=2.4e-33  Score=190.90  Aligned_cols=143  Identities=32%  Similarity=0.557  Sum_probs=118.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus        39 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  118 (199)
T 3l0i_B           39 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ  118 (199)
T ss_dssp             ECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCS
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCH
Confidence            69999999999999999988877778877544 67778899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              +|++||+||+|+.+.+.+...++..++..++++++++||++|+|
T Consensus       119 ~s~~~~~~~~~~i~~~~~~~--------------~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~g  182 (199)
T 3l0i_B          119 ESFNNVKQWLQEIDRYASEN--------------VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN  182 (199)
T ss_dssp             HHHHHHHHHHHHHHSCC-CC--------------SEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HH
T ss_pred             HHHHHHHHHHHHHHHhccCC--------------CCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence            99999999988886554322              99999999999987777777788999999999999999999864

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=2.5e-31  Score=183.67  Aligned_cols=140  Identities=21%  Similarity=0.348  Sum_probs=123.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+||++|++.+..++..+++++|++|+|||++++
T Consensus        21 ~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~  100 (221)
T 3gj0_A           21 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR  100 (221)
T ss_dssp             EECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCH
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCH
Confidence            69999999999999998888888888888554 66777888999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+......               +|+++|+||+|+.+....  .+...+++..+++++++||++|+|
T Consensus       101 ~s~~~~~~~~~~~~~~~~~---------------~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~g  161 (221)
T 3gj0_A          101 VTYKNVPNWHRDLVRVCEN---------------IPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYN  161 (221)
T ss_dssp             HHHHTHHHHHHHHHHHSTT---------------CCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBT
T ss_pred             HHHHHHHHHHHHHHHhCCC---------------CCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCC
Confidence            9999999999999876532               899999999999654332  357778888999999999999986

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=7.1e-31  Score=178.78  Aligned_cols=138  Identities=20%  Similarity=0.223  Sum_probs=107.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|.++.+. .+.+|++.. ...+.+++  +.+.+||++|++++..++..+++++|++++|||+++++
T Consensus        31 vG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~  106 (198)
T 1f6b_A           31 LGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE  106 (198)
T ss_dssp             EEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGG
T ss_pred             ECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHH
Confidence            699999999999999988764 456777654 34566776  77899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----------------h
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES-----------------W  143 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~  143 (157)
                      +|+.+..|+..++.......             +|+++|+||+|+..  .++.+++..++..                 .
T Consensus       107 s~~~~~~~~~~~~~~~~~~~-------------~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (198)
T 1f6b_A          107 RLLESKEELDSLMTDETIAN-------------VPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNAR  171 (198)
T ss_dssp             GHHHHHHHHHHHHTCGGGTT-------------SCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSC
T ss_pred             HHHHHHHHHHHHHhCcccCC-------------CcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCc
Confidence            99999999999886543333             99999999999965  5667777776653                 3


Q ss_pred             CCcEEEeccccCCC
Q psy1873         144 KAGFVEASAKQDDY  157 (157)
Q Consensus       144 ~~~~~e~Sa~~~~~  157 (157)
                      ++++++|||++|+|
T Consensus       172 ~~~~~~~SA~~g~g  185 (198)
T 1f6b_A          172 PLEVFMCSVLKRQG  185 (198)
T ss_dssp             CEEEEECBTTTTBS
T ss_pred             eEEEEEEECCCCCC
Confidence            45899999999986

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=5.6e-31  Score=178.71  Aligned_cols=148  Identities=15%  Similarity=0.145  Sum_probs=110.6

Q ss_pred             CCCCCCChhhhHhhhhcccccc-cccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVD-SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+.. .+.+|++..+ ..+  +...+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus        23 ~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~-~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~   99 (199)
T 4bas_A           23 CGLDNSGKTTIINQVKPAQSSSKHITATVGYNV-ETF--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDH   99 (199)
T ss_dssp             ECCTTSCHHHHHHHHSCCC----CCCCCSSEEE-EEE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCG
T ss_pred             ECCCCCCHHHHHHHHhcCCCcccccccccceeE-EEE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcH
Confidence            6999999999999999999987 7888888333 223  34557899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce---ecHHHHHH-HHHHhCCcEEEeccccC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM---ISYDEGKR-LAESWKAGFVEASAKQD  155 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~---~~~~~~~~-~~~~~~~~~~e~Sa~~~  155 (157)
                      ++|+.+..|+..++.........      .....+|++||+||+|+.....   +....... +++..++++++|||++|
T Consensus       100 ~s~~~~~~~~~~~~~~~~~~~~~------~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  173 (199)
T 4bas_A          100 LRLCVVKSEIQAMLKHEDIRREL------PGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKG  173 (199)
T ss_dssp             GGHHHHHHHHHHHHTSHHHHSBC------TTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTT
T ss_pred             HHHHHHHHHHHHHHhChhhhhcc------cccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCc
Confidence            99999999999987764321000      0001299999999999976522   21111111 12446789999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       174 ~g  175 (199)
T 4bas_A          174 TG  175 (199)
T ss_dssp             BT
T ss_pred             cC
Confidence            86

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=3.2e-30  Score=174.47  Aligned_cols=138  Identities=19%  Similarity=0.279  Sum_probs=114.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+. .+.+|++.. ...+.+++  +.+.+||++|++++..++..+++++|++|+|||+++++
T Consensus        29 vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~  104 (190)
T 1m2o_B           29 LGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE  104 (190)
T ss_dssp             EESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGG
T ss_pred             ECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChH
Confidence            699999999999999988775 456777653 45566776  77899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH------------hCCcEE
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES------------WKAGFV  148 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~  148 (157)
                      +|+.+..|+..++.......             .|+++|+||+|+.+  .++.++...++..            .+++++
T Consensus       105 s~~~~~~~~~~~~~~~~~~~-------------~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T 1m2o_B          105 RFDEARVELDALFNIAELKD-------------VPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVF  169 (190)
T ss_dssp             GHHHHHHHHHHHHTCGGGTT-------------CCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEE
T ss_pred             HHHHHHHHHHHHHcchhhcC-------------CCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEE
Confidence            99999999999876543333             99999999999965  5566666665432            346899


Q ss_pred             EeccccCCC
Q psy1873         149 EASAKQDDY  157 (157)
Q Consensus       149 e~Sa~~~~~  157 (157)
                      +|||++|+|
T Consensus       170 ~~Sa~~g~g  178 (190)
T 1m2o_B          170 MCSVVMRNG  178 (190)
T ss_dssp             ECBTTTTBS
T ss_pred             EeECCcCCC
Confidence            999999986

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=3.6e-31  Score=179.20  Aligned_cols=139  Identities=17%  Similarity=0.139  Sum_probs=111.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccc-----------cCCccceE-EEEE-EECCeEEEEEEEeCCCCccCcCchhhhccCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSY-----------DPTIENTF-VKTT-RMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI   67 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~-----------~~t~~~~~-~~~~-~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   67 (157)
                      ||++|||||||++.+ .+.+...+           .+|++..+ ...+ .+++..+.+++||++|++++..++..+++++
T Consensus        20 vG~~~~GKssL~~~l-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   98 (198)
T 3t1o_A           20 YGPGLSGKTTNLKWI-YSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGV   98 (198)
T ss_dssp             ECSTTSSHHHHHHHH-HHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTC
T ss_pred             ECCCCCCHHHHHHHH-HhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcC
Confidence            699999999999554 45555443           34555433 2333 5667788999999999999999999999999


Q ss_pred             CEEEEEEECC------ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873          68 HGYVLVYSIT------SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE  141 (157)
Q Consensus        68 ~~~ilv~d~~------~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~  141 (157)
                      |++|+|||++      +.++++.+..|+..+...               ...+|++||+||+|+.+  .+..+++..+++
T Consensus        99 d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~---------------~~~~piilv~NK~Dl~~--~~~~~~~~~~~~  161 (198)
T 3t1o_A           99 DGIVFVADSAPNRLRANAESMRNMRENLAEYGLT---------------LDDVPIVIQVNKRDLPD--ALPVEMVRAVVD  161 (198)
T ss_dssp             CEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCC---------------TTSSCEEEEEECTTSTT--CCCHHHHHHHHC
T ss_pred             CEEEEEEECCcchhhHhHHHHHHHHHHHHhhccc---------------cCCCCEEEEEEchhccc--ccCHHHHHHHHH
Confidence            9999999999      567788888887776211               12399999999999955  477889999999


Q ss_pred             HhCC-cEEEeccccCCC
Q psy1873         142 SWKA-GFVEASAKQDDY  157 (157)
Q Consensus       142 ~~~~-~~~e~Sa~~~~~  157 (157)
                      .+++ +++++||++|+|
T Consensus       162 ~~~~~~~~~~Sa~~~~g  178 (198)
T 3t1o_A          162 PEGKFPVLEAVATEGKG  178 (198)
T ss_dssp             TTCCSCEEECBGGGTBT
T ss_pred             hcCCceEEEEecCCCcC
Confidence            9999 999999999986

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=2.9e-31  Score=174.96  Aligned_cols=138  Identities=18%  Similarity=0.215  Sum_probs=107.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+.. +.||++.. ...+..  ..+.+.+||++|++++..++..+++++|++++|||+++++
T Consensus         6 ~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~   81 (164)
T 1r8s_A            6 VGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE   81 (164)
T ss_dssp             ECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC-EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGG
T ss_pred             ECCCCCCHHHHHHHHHcCCcCc-ccCcCcee-EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence            6999999999999999888764 56777732 333333  4477899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHH-----HHHHhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKR-----LAESWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~  155 (157)
                      +++.+..|+..++.......             .|+++|+||+|+.+..  ...+...     .++..+++++++||++|
T Consensus        82 s~~~~~~~~~~~~~~~~~~~-------------~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  146 (164)
T 1r8s_A           82 RVNEAREELMRMLAEDELRD-------------AVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSG  146 (164)
T ss_dssp             GHHHHHHHHHHHHTCGGGTT-------------CEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTT
T ss_pred             HHHHHHHHHHHHHhchhhcC-------------CeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCC
Confidence            99999999988876543323             9999999999996532  2222221     11223457999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       147 ~g  148 (164)
T 1r8s_A          147 DG  148 (164)
T ss_dssp             BT
T ss_pred             cC
Confidence            86

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.97  E-value=5.8e-30  Score=186.11  Aligned_cols=142  Identities=27%  Similarity=0.444  Sum_probs=127.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++.+..++..+++.+|++|+|||++++.
T Consensus       161 ~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~  240 (332)
T 2wkq_A          161 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPA  240 (332)
T ss_dssp             EESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHH
T ss_pred             ECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHH
Confidence            59999999999999999999888889998888888889999999999999999999999999999999999999999999


Q ss_pred             hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-c
Q psy1873          81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-G  146 (157)
Q Consensus        81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~  146 (157)
                      +++.+. .|+..+.....  .             +|+++|+||+|+...            +.+...++..+++..++ +
T Consensus       241 s~~~~~~~~~~~~~~~~~--~-------------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  305 (332)
T 2wkq_A          241 SFHHVRAKWYPEVRHHCP--N-------------TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK  305 (332)
T ss_dssp             HHHHHHHTHHHHHHHHCT--T-------------SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHHHHHHhhCC--C-------------CcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcE
Confidence            999997 67766665433  2             999999999998543            56888899999999997 9


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      +++|||++|+|
T Consensus       306 ~~~~Sa~~~~g  316 (332)
T 2wkq_A          306 YLECSALTQRG  316 (332)
T ss_dssp             EEECCTTTCTT
T ss_pred             EEEecCCCCcC
Confidence            99999999986

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=4.3e-29  Score=169.92  Aligned_cols=143  Identities=31%  Similarity=0.479  Sum_probs=124.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|++..+...+.+|++..+ ...+.+++..+.+.+||++|++++..++..+++.++++++|||+++.
T Consensus        11 vG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~   90 (199)
T 2f9l_A           11 IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKH   90 (199)
T ss_dssp             ESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCH
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCH
Confidence            69999999999999999988877788887554 67788999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+...... .             .|+++++||+|+...+.+...++..++...++.++++||++++|
T Consensus        91 ~s~~~~~~~~~~~~~~~~~-~-------------~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~  154 (199)
T 2f9l_A           91 LTYENVERWLKELRDHADS-N-------------IVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTN  154 (199)
T ss_dssp             HHHHTHHHHHHHHHHHSCT-T-------------CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred             HHHHHHHHHHHHHHHhcCC-C-------------CeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            9999998888777554322 2             89999999999987777888889999999999999999999876

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.94  E-value=1.9e-32  Score=187.06  Aligned_cols=142  Identities=29%  Similarity=0.468  Sum_probs=123.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++++|++|+|||++++.
T Consensus        36 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~  115 (204)
T 3th5_A           36 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPA  115 (204)
Confidence            69999999999999999998888888888777777778888889999999999999999999999999999999999999


Q ss_pred             hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhCC-c
Q psy1873          81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER------------MISYDEGKRLAESWKA-G  146 (157)
Q Consensus        81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~  146 (157)
                      +++.+. .|+..+.....  .             +|+++|+||+|+.+.+            .+...++..+++.+++ +
T Consensus       116 s~~~~~~~~~~~l~~~~~--~-------------~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  180 (204)
T 3th5_A          116 SFENVRAKWYPEVRHHCP--N-------------TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK  180 (204)
Confidence            999986 67666654432  2             9999999999996543            5667788889999998 9


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      ++++||++|+|
T Consensus       181 ~~~vSA~~g~g  191 (204)
T 3th5_A          181 YLECSALTQRG  191 (204)
Confidence            99999999986

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=1e-30  Score=176.46  Aligned_cols=139  Identities=22%  Similarity=0.300  Sum_probs=111.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+...+.+|++..+.. +..  ..+.+.+||++|++++..++..+++++|++|+|||+++++
T Consensus        28 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~  104 (188)
T 1zd9_A           28 VGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK-ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE  104 (188)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGG
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE-EEe--CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHH
Confidence            6999999999999999999887888888865532 333  3577899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHH-----HHHhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRL-----AESWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~  155 (157)
                      +++.+..|+..++.......             .|+++|+||+|+....  ...+....     +...+++++++||++|
T Consensus       105 s~~~~~~~~~~~~~~~~~~~-------------~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g  169 (188)
T 1zd9_A          105 KIEASKNELHNLLDKPQLQG-------------IPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEK  169 (188)
T ss_dssp             GHHHHHHHHHHHHTCGGGTT-------------CCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             HHHHHHHHHHHHHhCcccCC-------------CCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCC
Confidence            99999999988876543223             9999999999996532  22222211     1123468999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       170 ~g  171 (188)
T 1zd9_A          170 DN  171 (188)
T ss_dssp             TT
T ss_pred             CC
Confidence            86

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=6.8e-30  Score=169.36  Aligned_cols=140  Identities=16%  Similarity=0.216  Sum_probs=109.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+. .+.+|++.. ...+.++  ...+.+||++|++++..++..+++++|++++|||+++++
T Consensus        13 ~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~   88 (171)
T 1upt_A           13 LGLDGAGKTTILYRLQVGEVV-TTIPTIGFN-VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD   88 (171)
T ss_dssp             ECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE-EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCT
T ss_pred             ECCCCCCHHHHHHHHhcCCCC-CcCCcCccc-eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHH
Confidence            699999999999999988875 356776633 3445555  467899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce---ecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM---ISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..++.......             .|+++|+||+|+.+...   +.......++...+++++++||++|+|
T Consensus        89 s~~~~~~~~~~~~~~~~~~~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  155 (171)
T 1upt_A           89 RIGISKSELVAMLEEEELRK-------------AILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTG  155 (171)
T ss_dssp             THHHHHHHHHHHHTCGGGTT-------------CEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTT
T ss_pred             HHHHHHHHHHHHHhchhhCC-------------CEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcC
Confidence            99999999988876643223             99999999999965422   111111122334467899999999986

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=2.7e-29  Score=169.60  Aligned_cols=141  Identities=17%  Similarity=0.219  Sum_probs=113.7

Q ss_pred             CCCCCCChhhhHhhhhccc-ccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ-FVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++. +...+.+|++. ....+.+++  +.+.+||++|++++..++..+++++|++|+|||++++
T Consensus        27 ~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~  103 (190)
T 2h57_A           27 LGLDNSGKTTIINKLKPSNAQSQNILPTIGF-SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDR  103 (190)
T ss_dssp             EECTTSSHHHHHHHTSCGGGCCSSCCCCSSE-EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCH
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCcCCccce-eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCH
Confidence            6999999999999999987 56667788763 345555655  6789999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEecccc
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE-----SWKAGFVEASAKQ  154 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~  154 (157)
                      ++++.+..|+..++......           ....|+++|+||+|+..  ....++...+..     ..+++++++||++
T Consensus       104 ~s~~~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  170 (190)
T 2h57_A          104 LRMVVAKEELDTLLNHPDIK-----------HRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIK  170 (190)
T ss_dssp             HHHHHHHHHHHHHHHSTTTT-----------TSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred             HHHHHHHHHHHHHHhChhhc-----------cCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence            99999999999988764320           01299999999999965  334455555553     2357899999999


Q ss_pred             CCC
Q psy1873         155 DDY  157 (157)
Q Consensus       155 ~~~  157 (157)
                      |+|
T Consensus       171 ~~g  173 (190)
T 2h57_A          171 GEG  173 (190)
T ss_dssp             TBT
T ss_pred             CcC
Confidence            986

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.96  E-value=2.6e-30  Score=175.14  Aligned_cols=138  Identities=20%  Similarity=0.212  Sum_probs=102.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+.. +.+|++.. ...+..++  +.+.+||++|++++..++..+++++|++|+|||+++++
T Consensus        35 ~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~  110 (192)
T 2b6h_A           35 VGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE  110 (192)
T ss_dssp             EESTTSSHHHHHHHHCSSCCEE-EEEETTEE-EEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGG
T ss_pred             ECCCCCCHHHHHHHHHhCCccc-cCCcCcee-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH
Confidence            6999999999999999888763 45677622 33444444  77899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHH-----HHHHhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKR-----LAESWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~  155 (157)
                      +++.+..|+..++.......             .|+++|+||+|+.+..  ..++...     ++...++++++|||++|
T Consensus       111 s~~~~~~~l~~~~~~~~~~~-------------~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g  175 (192)
T 2b6h_A          111 RVQESADELQKMLQEDELRD-------------AVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQG  175 (192)
T ss_dssp             GHHHHHHHHHHHHTCGGGTT-------------CEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTT
T ss_pred             HHHHHHHHHHHHhcccccCC-------------CeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCc
Confidence            99999999998876543333             9999999999996532  2222211     11223457999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       176 ~g  177 (192)
T 2b6h_A          176 TG  177 (192)
T ss_dssp             BT
T ss_pred             CC
Confidence            86

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=3.3e-31  Score=178.36  Aligned_cols=141  Identities=17%  Similarity=0.238  Sum_probs=104.9

Q ss_pred             CCCCCCChhhhHhhhhcc--cccccccCCccceE-EEEEEE---CCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDG--QFVDSYDPTIENTF-VKTTRM---NNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVY   74 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~--~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   74 (157)
                      ||++|||||||+++|++.  .+...+.+|++..+ ...+.+   ++..+.+.+||++|++++..+++.++++++++++||
T Consensus         8 vG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~   87 (184)
T 2zej_A            8 VGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVY   87 (184)
T ss_dssp             ESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEE
Confidence            699999999999999985  55666778887554 333333   345678999999999999999999999999999999


Q ss_pred             ECCCh-hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec---HHHHHHHHHHhCCc----
Q psy1873          75 SITSH-KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS---YDEGKRLAESWKAG----  146 (157)
Q Consensus        75 d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----  146 (157)
                      |++++ .+++.+..|+..+.....  .             .|+++||||+|+.+.+.+.   ...+..+++.++++    
T Consensus        88 d~~~~~~s~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (184)
T 2zej_A           88 DLSKGQAEVDAMKPWLFNIKARAS--S-------------SPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRD  152 (184)
T ss_dssp             EGGGCHHHHHTHHHHHHHHHHHCT--T-------------CEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEE
T ss_pred             eCCcchhHHHHHHHHHHHHHhhCC--C-------------CcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhh
Confidence            99997 589999999988876532  2             8999999999997655443   34456777777887    


Q ss_pred             EEEeccccCC
Q psy1873         147 FVEASAKQDD  156 (157)
Q Consensus       147 ~~e~Sa~~~~  156 (157)
                      ++++||++|+
T Consensus       153 ~~~~Sa~~~~  162 (184)
T 2zej_A          153 YHFVNATEES  162 (184)
T ss_dssp             EEECCTTSCC
T ss_pred             eEEEecccCc
Confidence            9999999985

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.96  E-value=4.3e-29  Score=167.93  Aligned_cols=138  Identities=20%  Similarity=0.256  Sum_probs=111.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++. ...+.+|++.. ...+.+++  +.+.+||++|++++..++..+++++|++++|||+++++
T Consensus        24 ~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~   99 (186)
T 1ksh_A           24 LGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQ   99 (186)
T ss_dssp             ECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGG
T ss_pred             ECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHH
Confidence            6999999999999999888 66777887733 34455554  67899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA-----ESWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~  155 (157)
                      +++.+..|+..++.......             .|+++|+||+|+.+...  .++.....     ...+++++++||++|
T Consensus       100 s~~~~~~~~~~~~~~~~~~~-------------~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (186)
T 1ksh_A          100 RMQDCQRELQSLLVEERLAG-------------ATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTG  164 (186)
T ss_dssp             GHHHHHHHHHHHHTCGGGTT-------------CEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             HHHHHHHHHHHHHhChhcCC-------------CcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCC
Confidence            99999999988877643333             99999999999965432  23333322     134568999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       165 ~g  166 (186)
T 1ksh_A          165 ED  166 (186)
T ss_dssp             TT
T ss_pred             CC
Confidence            86

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=2e-29  Score=169.83  Aligned_cols=138  Identities=19%  Similarity=0.237  Sum_probs=107.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+. .+.+|++.. ...+.+++  +.+.+||++|++++..++..+++++|++|+|||+++++
T Consensus        22 ~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~   97 (187)
T 1zj6_A           22 VGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE   97 (187)
T ss_dssp             EESTTSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTT
T ss_pred             ECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH
Confidence            699999999999999988877 667777733 34445555  77899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE-----SWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~  155 (157)
                      +++.+..|+..+........             .|+++|+||+|+.+  ....++......     ..+++++++||++|
T Consensus        98 s~~~~~~~~~~~~~~~~~~~-------------~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g  162 (187)
T 1zj6_A           98 RISVTREELYKMLAHEDLRK-------------AGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTG  162 (187)
T ss_dssp             THHHHHHHHHHHHTSGGGTT-------------CEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred             HHHHHHHHHHHHHhchhhCC-------------CeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCC
Confidence            99999999999887643223             99999999999965  233444444332     34578999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       163 ~g  164 (187)
T 1zj6_A          163 EG  164 (187)
T ss_dssp             BT
T ss_pred             cC
Confidence            86

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.96  E-value=1e-28  Score=167.23  Aligned_cols=143  Identities=31%  Similarity=0.469  Sum_probs=126.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|++..+...+.+|++..+ ...+.++++.+.+.+||++|++++..++..+++.++++++|||+++.
T Consensus        35 vG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~  114 (191)
T 1oix_A           35 IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKH  114 (191)
T ss_dssp             EECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCH
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCH
Confidence            69999999999999999988888888888655 67888999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+...... .             .|+++++||+|+.+.+.+...+++.++...++.++++||++++|
T Consensus       115 ~s~~~~~~~~~~~~~~~~~-~-------------~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~  178 (191)
T 1oix_A          115 LTYENVERWLKELRDHADS-N-------------IVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN  178 (191)
T ss_dssp             HHHHTHHHHHHHHHHHSCT-T-------------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred             HHHHHHHHHHHHHHHhcCC-C-------------CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            9999998888776554322 2             89999999999987777888899999999999999999999876

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.96  E-value=2.7e-29  Score=168.46  Aligned_cols=138  Identities=17%  Similarity=0.209  Sum_probs=110.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+ ..+.+|++..+ ..+.+++  +.+.+||++|++++..++..+++++|++|+|||+++++
T Consensus        27 ~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~  102 (181)
T 2h17_A           27 VGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE  102 (181)
T ss_dssp             EEETTSSHHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTT
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH
Confidence            69999999999999999888 55667777433 4455555  77899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA-----ESWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~  155 (157)
                      +++.+..|+..++.......             .|+++|+||+|+...  ...++.....     ...+++++++||++|
T Consensus       103 s~~~~~~~~~~~~~~~~~~~-------------~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g  167 (181)
T 2h17_A          103 RISVTREELYKMLAHEDLRK-------------AGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTG  167 (181)
T ss_dssp             THHHHHHHHHHHHTCGGGTT-------------CEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred             HHHHHHHHHHHHHhChhhCC-------------CeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence            99999999988876543223             999999999999653  3334433332     234568999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       168 ~g  169 (181)
T 2h17_A          168 EG  169 (181)
T ss_dssp             BT
T ss_pred             cC
Confidence            86

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=5.8e-30  Score=172.68  Aligned_cols=138  Identities=22%  Similarity=0.223  Sum_probs=108.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+.+.+.. +.+|++.. ...+..++  +.+.+||++|++++..++..+++++|++|+|||+++++
T Consensus        28 ~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~  103 (189)
T 2x77_A           28 LGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRD  103 (189)
T ss_dssp             EEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCT
T ss_pred             ECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHH
Confidence            6999999999999999887754 56777633 34445554  67899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHH-----HHHHhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKR-----LAESWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~  155 (157)
                      +++.+..|+..++.......             .|+++|+||+|+.+...  ..+...     .+...+++++++||++|
T Consensus       104 s~~~~~~~~~~~~~~~~~~~-------------~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  168 (189)
T 2x77_A          104 RMGVAKHELYALLDEDELRK-------------SLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTG  168 (189)
T ss_dssp             THHHHHHHHHHHHTCSTTTT-------------CEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             HHHHHHHHHHHHHhhhhcCC-------------CeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCc
Confidence            99999999888876543222             99999999999965422  122221     22334568999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       169 ~g  170 (189)
T 2x77_A          169 DG  170 (189)
T ss_dssp             TT
T ss_pred             cC
Confidence            86

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.96  E-value=6.6e-30  Score=171.64  Aligned_cols=138  Identities=20%  Similarity=0.232  Sum_probs=107.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+ ..+.+|++.. ...+.+++  +.+.+||++|++.+..++..+++++|++++|||+++++
T Consensus        22 vG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   97 (181)
T 1fzq_A           22 LGLDNAGKTTLLKQLASEDI-SHITPTQGFN-IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRK   97 (181)
T ss_dssp             EESTTSSHHHHHHHHCCSCC-EEEEEETTEE-EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGG
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CcccCcCCeE-EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHH
Confidence            69999999999999998765 3456777632 34555654  67899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA-----ESWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~  155 (157)
                      +++.+..|+..++.......             .|+++|+||+|+.+...  .++.....     ...++++++|||++|
T Consensus        98 s~~~~~~~~~~~~~~~~~~~-------------~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  162 (181)
T 1fzq_A           98 RFEETGQELTELLEEEKLSC-------------VPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTG  162 (181)
T ss_dssp             GHHHHHHHHHHHTTCGGGTT-------------CCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             HHHHHHHHHHHHHhChhhcC-------------CCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCC
Confidence            99999999888766543223             99999999999965433  23322221     123468999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       163 ~g  164 (181)
T 1fzq_A          163 EG  164 (181)
T ss_dssp             TT
T ss_pred             CC
Confidence            87

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=8.3e-29  Score=168.15  Aligned_cols=138  Identities=17%  Similarity=0.151  Sum_probs=105.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE---EEEEEE-CCeEEEEEEEeCCCCccCcCch---hhhccCCCEEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF---VKTTRM-NNQDYDLKLVDTAGQDEYSIFP---AQYSMDIHGYVLV   73 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~i~D~~g~~~~~~~~---~~~~~~~~~~ilv   73 (157)
                      +|++|||||||++++.+. +...  ++.+..+   .....+ ++..+.+++||++|+++|..+.   ..+++++|++|+|
T Consensus        26 vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v  102 (196)
T 3llu_A           26 MGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYV  102 (196)
T ss_dssp             EESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEE
T ss_pred             ECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEE
Confidence            699999999999987764 3322  3333222   222233 3667889999999999988776   8999999999999


Q ss_pred             EECCCh--hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC-------CceecHHHHHHHHH---
Q psy1873          74 YSITSH--KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM-------ERMISYDEGKRLAE---  141 (157)
Q Consensus        74 ~d~~~~--~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~-------~~~~~~~~~~~~~~---  141 (157)
                      ||++++  ++++.+..|+..+.....  .             +|++|||||+|+.+       .+.+...++..+++   
T Consensus       103 ~d~~~~~~~~~~~~~~~l~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~  167 (196)
T 3llu_A          103 IDAQDDYMEALTRLHITVSKAYKVNP--D-------------MNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL  167 (196)
T ss_dssp             EETTSCCHHHHHHHHHHHHHHHHHCT--T-------------CEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EECCCchHHHHHHHHHHHHHHHhcCC--C-------------CcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence            999997  777777778777654332  2             99999999999754       35677777888888   


Q ss_pred             -HhCCcEEEeccccCCC
Q psy1873         142 -SWKAGFVEASAKQDDY  157 (157)
Q Consensus       142 -~~~~~~~e~Sa~~~~~  157 (157)
                       .++++|++|||++ +|
T Consensus       168 ~~~~~~~~e~Sa~~-~~  183 (196)
T 3llu_A          168 EKLHLSFYLTSIYD-HS  183 (196)
T ss_dssp             TTSCEEEEEECTTS-TH
T ss_pred             hcCCcceEEEEech-hh
Confidence             7788999999998 64

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=2.1e-29  Score=168.86  Aligned_cols=138  Identities=20%  Similarity=0.232  Sum_probs=105.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++++++.+ ..+.+|++.. ...+.+++  ..+.+||++|++++..++..+++++|++++|||+++++
T Consensus        24 ~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~   99 (183)
T 1moz_A           24 LGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKD   99 (183)
T ss_dssp             EEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTT
T ss_pred             ECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH
Confidence            69999999999999998887 5666777733 34455555  77899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE-----SWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~  155 (157)
                      +++.+..|+..++.......             .|+++|+||+|+.+.  ...++......     ..+++++++||++|
T Consensus       100 s~~~~~~~~~~~~~~~~~~~-------------~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~  164 (183)
T 1moz_A          100 RMSTASKELHLMLQEEELQD-------------AALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKG  164 (183)
T ss_dssp             THHHHHHHHHHHTTSSTTSS-------------CEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGT
T ss_pred             HHHHHHHHHHHHHcChhhCC-------------CeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence            99999999988876543222             999999999999653  23343333322     22357999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       165 ~g  166 (183)
T 1moz_A          165 EG  166 (183)
T ss_dssp             BT
T ss_pred             cC
Confidence            86

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.96  E-value=3.4e-29  Score=180.62  Aligned_cols=138  Identities=20%  Similarity=0.179  Sum_probs=103.1

Q ss_pred             CCCCCCChhhhHhhhhcccccc---cccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC---chhhhccCCCEEEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVD---SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI---FPAQYSMDIHGYVLVY   74 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~ilv~   74 (157)
                      ||++|||||||++++.++.+..   .+.+|++..+..   ++ ..+.++||||+||++|..   +++.++++++++|+||
T Consensus         5 lGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~   80 (331)
T 3r7w_B            5 MGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVI   80 (331)
T ss_dssp             ECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEEC
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEE
Confidence            6999999999999987654432   356788865532   22 457899999999999974   4689999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC-------ceecHHHHHHHHHH----h
Q psy1873          75 SITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME-------RMISYDEGKRLAES----W  143 (157)
Q Consensus        75 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~-------~~~~~~~~~~~~~~----~  143 (157)
                      |++++  +.+...||..++......           .+.+|++|+|||+|+..+       +++..++++.+++.    +
T Consensus        81 Ditd~--~~~~~~~l~~~l~~~~~~-----------~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~  147 (331)
T 3r7w_B           81 DSQDE--YINAITNLAMIIEYAYKV-----------NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGV  147 (331)
T ss_dssp             CCSSC--TTHHHHHHHHHHHHHHHH-----------CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCC
T ss_pred             ECCch--HHHHHHHHHHHHHHHhhc-----------CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhccccc
Confidence            99998  333334443333222110           112999999999999754       56888888899986    6


Q ss_pred             CCcEEEeccccC
Q psy1873         144 KAGFVEASAKQD  155 (157)
Q Consensus       144 ~~~~~e~Sa~~~  155 (157)
                      +++|+||||++.
T Consensus       148 ~i~f~eTSAkd~  159 (331)
T 3r7w_B          148 QVSFYLTSIFDH  159 (331)
T ss_dssp             CEEEECCCSSSS
T ss_pred             CceEEEeccCCC
Confidence            899999999973

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.5e-29  Score=177.38  Aligned_cols=138  Identities=22%  Similarity=0.305  Sum_probs=104.0

Q ss_pred             CCChhhhHhhhhc---ccccccccCCc-cceE-EEE--------------EEECCeEEEEEEEe----------------
Q psy1873           5 SVGKSSLSIQFVD---GQFVDSYDPTI-ENTF-VKT--------------TRMNNQDYDLKLVD----------------   49 (157)
Q Consensus         5 ~~GKssli~~~~~---~~~~~~~~~t~-~~~~-~~~--------------~~~~~~~~~~~i~D----------------   49 (157)
                      |||||||+++|++   ..+...+.+|+ +..+ ...              ..+++..+.+++||                
T Consensus        38 ~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~i~D~~~~~D~~~~~~~~~~  117 (255)
T 3c5h_A           38 GIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRST  117 (255)
T ss_dssp             CCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEEEEEECCCEETTTCSBTTGG
T ss_pred             CcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEEEEEEcccccccccccccccc
Confidence            9999999999998   56666666665 3221 111              12567788999999                


Q ss_pred             -------CCCCccCcCchhhhcc---------------------CCCEEEEEEECCCh--hhHHHHHHHHHHHHHHhccc
Q psy1873          50 -------TAGQDEYSIFPAQYSM---------------------DIHGYVLVYSITSH--KSFEVVQILYDKLLDMTGKI   99 (157)
Q Consensus        50 -------~~g~~~~~~~~~~~~~---------------------~~~~~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~   99 (157)
                             ++|+++|..++..+++                     ++|++|+|||++++  .+|+.+..|+..+.......
T Consensus       118 ~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~  197 (255)
T 3c5h_A          118 ALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKT  197 (255)
T ss_dssp             GCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccC
Confidence                   7788888888888888                     79999999999998  99999999999988763322


Q ss_pred             cCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-hCCcEEEeccccCCC
Q psy1873         100 QNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES-WKAGFVEASAKQDDY  157 (157)
Q Consensus       100 ~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~  157 (157)
                      .             +|++|||||+|+...+.+  +++..++.. .+++++++||++|+|
T Consensus       198 ~-------------~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~g  241 (255)
T 3c5h_A          198 K-------------KPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVN  241 (255)
T ss_dssp             T-------------CCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred             C-------------CCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCC
Confidence            3             999999999999665554  577888876 488999999999986

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=1e-28  Score=169.61  Aligned_cols=116  Identities=19%  Similarity=0.340  Sum_probs=89.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCe-EEEEEEEeCCCCccCcC-chhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQ-DYDLKLVDTAGQDEYSI-FPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~ilv~d~~~   78 (157)
                      +|++|||||||+++|+++.+...+.++... +. .+.+++. .+.+.+||++|++++.. ++..++++++++|+|||+++
T Consensus        13 vG~~~~GKTsli~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~   90 (214)
T 2fh5_B           13 VGLCDSGKTLLFVRLLTGQYRDTQTSITDS-SA-IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA   90 (214)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCCBCCCCSCE-EE-EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTT
T ss_pred             ECCCCCCHHHHHHHHhCCCcccccCCccee-eE-EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCC
Confidence            699999999999999999888777655433 32 2566654 57899999999999988 88899999999999999999


Q ss_pred             hh-hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc
Q psy1873          79 HK-SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER  129 (157)
Q Consensus        79 ~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~  129 (157)
                      .. ++..+..|+..++......           ...+|++||+||+|+...+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~~~  131 (214)
T 2fh5_B           91 FQREVKDVAEFLYQVLIDSMAL-----------KNSPSLLIACNKQDIAMAK  131 (214)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTS-----------TTCCEEEEEEECTTSTTCC
T ss_pred             cCHHHHHHHHHHHHHHhhhhhc-----------ccCCCEEEEEECCCCCCcc
Confidence            64 5777777666665442111           1128999999999997543

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=1.2e-27  Score=172.91  Aligned_cols=141  Identities=19%  Similarity=0.217  Sum_probs=112.2

Q ss_pred             CCCCCCChhhhHhhhhcc--ccc-ccccCCccceEEEEEEECCeEEEEEEEeCCCCccC-----cCchhhhccCCCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDG--QFV-DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-----SIFPAQYSMDIHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~--~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~~~~~~il   72 (157)
                      +|++|||||||+++|+++  .+. ..+.+|++..+. .+.+++ .+.+.+||++|++++     ..++..+++++|++|+
T Consensus         9 vG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~   86 (307)
T 3r7w_A            9 MGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIH   86 (307)
T ss_dssp             ECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEE
T ss_pred             ECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEE
Confidence            699999999999999876  333 245667765543 344444 578999999999998     7889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC--Cce----ecHHHHHHHHHHhC--
Q psy1873          73 VYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM--ERM----ISYDEGKRLAESWK--  144 (157)
Q Consensus        73 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~--~~~----~~~~~~~~~~~~~~--  144 (157)
                      |||++++++++.+..|...+......            .+.+|++|||||+|+.+  .+.    +...++..+++.+|  
T Consensus        87 V~D~t~~~s~~~l~~~~~~l~~l~~~------------~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~  154 (307)
T 3r7w_A           87 VFDVESTEVLKDIEIFAKALKQLRKY------------SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFP  154 (307)
T ss_dssp             EEETTCSCHHHHHHHHHHHHHHHHHH------------CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             EEECCChhhHHHHHHHHHHHHHHHHh------------CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999997776555443221            11299999999999976  454    66788999999997  


Q ss_pred             -CcEEEeccccC
Q psy1873         145 -AGFVEASAKQD  155 (157)
Q Consensus       145 -~~~~e~Sa~~~  155 (157)
                       ++++++||+++
T Consensus       155 ~~~~~~tSa~~~  166 (307)
T 3r7w_A          155 NLIGFPTSIWDE  166 (307)
T ss_dssp             SCEEEECCTTSS
T ss_pred             CeEEEEeeecCC
Confidence             79999999983

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=2.2e-27  Score=157.10  Aligned_cols=134  Identities=20%  Similarity=0.170  Sum_probs=98.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcC------chhhhcc--CCCEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSI------FPAQYSM--DIHGYV   71 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~--~~~~~i   71 (157)
                      +|++|||||||+++|++..+.....+++. ......+.+++  ..+.+||++|+.++..      +...++.  ++++++
T Consensus         9 vG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i   86 (165)
T 2wji_A            9 IGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVV   86 (165)
T ss_dssp             ECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEE
Confidence            69999999999999998776544445443 22344556665  5689999999988763      3355664  899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873          72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus        72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                      +|+|.++.++   ...|+..+...    .             .|+++|+||+|+...+.+.. ++..+++.++++++++|
T Consensus        87 ~v~D~~~~~~---~~~~~~~~~~~----~-------------~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~S  145 (165)
T 2wji_A           87 NIVDATALER---NLYLTLQLMEM----G-------------ANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLS  145 (165)
T ss_dssp             EEEETTCHHH---HHHHHHHHHHT----T-------------CCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECB
T ss_pred             EEecCCchhH---hHHHHHHHHhc----C-------------CCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEE
Confidence            9999998654   34466665432    2             99999999999865444442 46788888999999999


Q ss_pred             cccCCC
Q psy1873         152 AKQDDY  157 (157)
Q Consensus       152 a~~~~~  157 (157)
                      |++|+|
T Consensus       146 A~~~~~  151 (165)
T 2wji_A          146 AAKKMG  151 (165)
T ss_dssp             GGGTBS
T ss_pred             cCCCCC
Confidence            999986

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.94  E-value=3.8e-28  Score=176.97  Aligned_cols=138  Identities=17%  Similarity=0.215  Sum_probs=103.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|+++.+...+ +|++..+ ..+..  ..+.+.+||++|++.+..++..+++.+|++|+|||++++.
T Consensus       171 vG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~-~~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~  246 (329)
T 3o47_A          171 VGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE  246 (329)
T ss_dssp             EESTTSSHHHHHHHTCSSCCEEEE-EETTEEE-EEEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSS
T ss_pred             ECCCCccHHHHHHHHhCCCCCCcc-cccceEE-EEEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchH
Confidence            699999999999999998876544 6666433 23334  3477899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA-----ESWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~  155 (157)
                      +|+.+..|+..++.......             +|++||+||+|+.+...  ..+.....     ...+++++++||++|
T Consensus       247 s~~~~~~~~~~~~~~~~~~~-------------~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g  311 (329)
T 3o47_A          247 RVNEAREELMRMLAEDELRD-------------AVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSG  311 (329)
T ss_dssp             SHHHHHHHHHHHHTCGGGTT-------------CEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTT
T ss_pred             HHHHHHHHHHHHHhhhccCC-------------CeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCC
Confidence            99999999988877654333             99999999999965432  22222211     122457999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       312 ~g  313 (329)
T 3o47_A          312 DG  313 (329)
T ss_dssp             BT
T ss_pred             cC
Confidence            86

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.94  E-value=6.1e-28  Score=166.16  Aligned_cols=139  Identities=21%  Similarity=0.298  Sum_probs=103.9

Q ss_pred             CCCCCCChhhhHhhhhcccccc---cccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccC----CCEEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVD---SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMD----IHGYVLV   73 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----~~~~ilv   73 (157)
                      +|++|||||||+++|++..+..   .+.++++..+        ....+.+||++|++.+...+..+++.    ++++|+|
T Consensus        18 ~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v   89 (218)
T 1nrj_B           18 AGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM   89 (218)
T ss_dssp             ECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEE
Confidence            6999999999999999887643   2444444322        44678999999999999888888887    8999999


Q ss_pred             EECC-ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec------HHHHHHHHHHhCCc
Q psy1873          74 YSIT-SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS------YDEGKRLAESWKAG  146 (157)
Q Consensus        74 ~d~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~  146 (157)
                      ||++ ++++++.+..|+..++......          ....+|+++|+||+|+...+.+.      .+++..++...+++
T Consensus        90 ~D~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~  159 (218)
T 1nrj_B           90 VDSTVDPKKLTTTAEFLVDILSITESS----------CENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS  159 (218)
T ss_dssp             EETTSCTTCCHHHHHHHHHHHHHHHHH----------STTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EECCCChHHHHHHHHHHHHHHhccccc----------ccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999 8999999999998888764310          00129999999999997766544      55677888888899


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      ++++||++|++
T Consensus       160 ~~~~Sa~~~~~  170 (218)
T 1nrj_B          160 LNEVERKINEE  170 (218)
T ss_dssp             HHC--------
T ss_pred             ccccccccccc
Confidence            99999999874

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.93  E-value=2.5e-26  Score=176.91  Aligned_cols=139  Identities=19%  Similarity=0.169  Sum_probs=103.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEE-------E--ECCeEEEEEEEeCCCCccCcCchhhhccCCCEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTT-------R--MNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYV   71 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~-------~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   71 (157)
                      ||++|||||||+++|+++.+...+.+|++..+....       .  .++..+.+.+||++|++.+..++..++++++++|
T Consensus        47 vG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii  126 (535)
T 3dpu_A           47 IGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYM  126 (535)
T ss_dssp             ESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEE
Confidence            699999999999999999998888899886664332       1  1334678999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873          72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus        72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                      +|||+++.   +.+..|+..+......               .|++||+||+|+...+.+..++++.++...+++++++|
T Consensus       127 ~V~D~s~~---~~~~~~~~~l~~~~~~---------------~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vS  188 (535)
T 3dpu_A          127 LLLDSRTD---SNKHYWLRHIEKYGGK---------------SPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRIS  188 (535)
T ss_dssp             EEECGGGG---GGHHHHHHHHHHHSSS---------------CCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECC
T ss_pred             EEEeCCCc---hhHHHHHHHHHHhCCC---------------CCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEe
Confidence            99998765   4556777777665432               89999999999988788888889999999999999999


Q ss_pred             cccCCC
Q psy1873         152 AKQDDY  157 (157)
Q Consensus       152 a~~~~~  157 (157)
                      |++|+|
T Consensus       189 A~~g~g  194 (535)
T 3dpu_A          189 CKNGDG  194 (535)
T ss_dssp             C-----
T ss_pred             cCcccC
Confidence            999986

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.93  E-value=2.6e-25  Score=148.16  Aligned_cols=131  Identities=20%  Similarity=0.271  Sum_probs=96.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC-
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS-   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~-   78 (157)
                      +|++|||||||+++|+++.+...+.+++...+ ...+.+++.  .+.+||++|++++..++..++..+|++|+|||+++ 
T Consensus        14 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   91 (178)
T 2lkc_A           14 MGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDG   91 (178)
T ss_dssp             ESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCC
T ss_pred             ECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence            69999999999999999888776666655333 455667774  46799999999999999999999999999999998 


Q ss_pred             --hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-------hC--CcE
Q psy1873          79 --HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES-------WK--AGF  147 (157)
Q Consensus        79 --~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~-------~~--~~~  147 (157)
                        +++++.+.    .+   . ...             +|+++|+||+|+....   .++.......       ++  +++
T Consensus        92 ~~~~~~~~l~----~~---~-~~~-------------~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  147 (178)
T 2lkc_A           92 VMPQTVEAIN----HA---K-AAN-------------VPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIF  147 (178)
T ss_dssp             CCHHHHHHHH----HH---G-GGS-------------CCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEE
T ss_pred             CcHHHHHHHH----HH---H-hCC-------------CCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccE
Confidence              44444332    11   1 112             9999999999996531   2222222222       22  589


Q ss_pred             EEeccccCCC
Q psy1873         148 VEASAKQDDY  157 (157)
Q Consensus       148 ~e~Sa~~~~~  157 (157)
                      +++||++|+|
T Consensus       148 ~~~Sa~~~~g  157 (178)
T 2lkc_A          148 CKLSAKTKEG  157 (178)
T ss_dssp             EECCSSSSHH
T ss_pred             EEEecCCCCC
Confidence            9999999875

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.93  E-value=3.3e-25  Score=153.69  Aligned_cols=140  Identities=19%  Similarity=0.100  Sum_probs=95.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccc-cCCccceEEEEEEECCeEEEEEEEeCCCCccCc---------CchhhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSY-DPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS---------IFPAQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~~~~~~   70 (157)
                      +|++|||||||+++|+++.+.... ..+...........++  ..+.+||++|+....         ..+..++..+|++
T Consensus        35 vG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~  112 (228)
T 2qu8_A           35 SGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVI  112 (228)
T ss_dssp             ECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEE
Confidence            699999999999999998775322 2222222233334444  678999999984321         1123457888999


Q ss_pred             EEEEECCChhhHHH--HHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHH---HHHHHHHHhC-
Q psy1873          71 VLVYSITSHKSFEV--VQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYD---EGKRLAESWK-  144 (157)
Q Consensus        71 ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~---~~~~~~~~~~-  144 (157)
                      |+|||++++.+++.  ...|+..+....               ...|+++|+||+|+.+.+.+...   ....++...+ 
T Consensus       113 i~v~d~~~~~s~~~~~~~~~~~~l~~~~---------------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
T 2qu8_A          113 LFIIDISEQCGLTIKEQINLFYSIKSVF---------------SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN  177 (228)
T ss_dssp             EEEEETTCTTSSCHHHHHHHHHHHHTCC----------------CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCS
T ss_pred             EEEEecccccCcchHHHHHHHHHHHHhh---------------cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCC
Confidence            99999999988752  234554443321               12999999999999776666554   4667777777 


Q ss_pred             -CcEEEeccccCCC
Q psy1873         145 -AGFVEASAKQDDY  157 (157)
Q Consensus       145 -~~~~e~Sa~~~~~  157 (157)
                       ++++++||++|+|
T Consensus       178 ~~~~~~~SA~~g~g  191 (228)
T 2qu8_A          178 PIKFSSFSTLTGVG  191 (228)
T ss_dssp             CEEEEECCTTTCTT
T ss_pred             CceEEEEecccCCC
Confidence             8999999999986

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.93  E-value=7.4e-26  Score=152.22  Aligned_cols=134  Identities=21%  Similarity=0.173  Sum_probs=101.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcC------chhhhcc--CCCEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSI------FPAQYSM--DIHGYV   71 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~--~~~~~i   71 (157)
                      +|++|||||||+++|++..+.....+++. ......+..++  ..+.+||++|+..+..      ++..++.  .+++++
T Consensus        13 vG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i   90 (188)
T 2wjg_A           13 IGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVV   90 (188)
T ss_dssp             ECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEE
Confidence            69999999999999998766544445544 33355556665  6789999999998853      4556664  589999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873          72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus        72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                      +|+|.++   ++....|+..+...    .             .|+++|+||+|+...+.+. .++..+++.++++++++|
T Consensus        91 ~v~d~~~---~~~~~~~~~~~~~~----~-------------~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~S  149 (188)
T 2wjg_A           91 NIVDATA---LERNLYLTLQLMEM----G-------------ANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLS  149 (188)
T ss_dssp             EEEEGGG---HHHHHHHHHHHHTT----T-------------CCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECB
T ss_pred             EEecchh---HHHHHHHHHHHHhc----C-------------CCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEE
Confidence            9999875   55566677666542    2             8999999999986544444 457888889999999999


Q ss_pred             cccCCC
Q psy1873         152 AKQDDY  157 (157)
Q Consensus       152 a~~~~~  157 (157)
                      |++|+|
T Consensus       150 a~~~~~  155 (188)
T 2wjg_A          150 AAKKMG  155 (188)
T ss_dssp             GGGTBS
T ss_pred             ecCCCC
Confidence            999976

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.92  E-value=1.2e-25  Score=147.48  Aligned_cols=132  Identities=16%  Similarity=0.048  Sum_probs=91.6

Q ss_pred             CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccC-------cCchhhhccCCCEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-------SIFPAQYSMDIHGYV   71 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~~~~i   71 (157)
                      +|++|||||||+++|.+..+.  ..+.++....+...+..++.  .+.+||++|+..+       ...+..+++.+|+++
T Consensus         7 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i   84 (161)
T 2dyk_A            7 VGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVL   84 (161)
T ss_dssp             ECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEE
Confidence            699999999999999987643  23333333444556666664  6789999998874       334566789999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEe
Q psy1873          72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVEA  150 (157)
Q Consensus        72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~  150 (157)
                      +|+|++++.+..  ..++..++...   .             .|+++|+||+|+.+..    +++..++ .+++ +++++
T Consensus        85 ~v~d~~~~~~~~--~~~~~~~~~~~---~-------------~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~  141 (161)
T 2dyk_A           85 FAVDGRAELTQA--DYEVAEYLRRK---G-------------KPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPT  141 (161)
T ss_dssp             EEEESSSCCCHH--HHHHHHHHHHH---T-------------CCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEEC
T ss_pred             EEEECCCcccHh--HHHHHHHHHhc---C-------------CCEEEEEECcccccch----HhHHHHH-hCCCCCeEEE
Confidence            999999864432  23344443332   2             9999999999996542    3344555 6787 89999


Q ss_pred             ccccCCC
Q psy1873         151 SAKQDDY  157 (157)
Q Consensus       151 Sa~~~~~  157 (157)
                      ||++|+|
T Consensus       142 Sa~~~~g  148 (161)
T 2dyk_A          142 SSEHARG  148 (161)
T ss_dssp             BTTTTBS
T ss_pred             ecccCCC
Confidence            9999986

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.92  E-value=4.3e-26  Score=151.93  Aligned_cols=133  Identities=20%  Similarity=0.240  Sum_probs=96.3

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch--------hhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP--------AQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~~~~~~~   70 (157)
                      +|++|||||||+++|++..+  ...+.++..+.+...+.+++.  .+.+||++|+.++....        ..+++.+|++
T Consensus        10 vG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~   87 (172)
T 2gj8_A           10 AGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEIEQADRV   87 (172)
T ss_dssp             EESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEE
T ss_pred             ECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEE
Confidence            69999999999999998764  233444444555677777774  47899999987654321        1357899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA  150 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  150 (157)
                      ++|||++++.+++ ...|+..+...... .             +|+++|+||+|+.....       .++...+++++++
T Consensus        88 i~v~D~~~~~s~~-~~~~~~~~~~~~~~-~-------------~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~  145 (172)
T 2gj8_A           88 LFMVDGTTTDAVD-PAEIWPEFIARLPA-K-------------LPITVVRNKADITGETL-------GMSEVNGHALIRL  145 (172)
T ss_dssp             EEEEETTTCCCCS-HHHHCHHHHHHSCT-T-------------CCEEEEEECHHHHCCCC-------EEEEETTEEEEEC
T ss_pred             EEEEECCCCCCHH-HHHHHHHHHHhccc-C-------------CCEEEEEECccCCcchh-------hhhhccCCceEEE
Confidence            9999999998876 34677766654422 2             99999999999854211       1122346799999


Q ss_pred             ccccCCC
Q psy1873         151 SAKQDDY  157 (157)
Q Consensus       151 Sa~~~~~  157 (157)
                      ||++|+|
T Consensus       146 SA~~g~g  152 (172)
T 2gj8_A          146 SARTGEG  152 (172)
T ss_dssp             CTTTCTT
T ss_pred             eCCCCCC
Confidence            9999986

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.92  E-value=2.6e-26  Score=154.51  Aligned_cols=136  Identities=18%  Similarity=0.246  Sum_probs=103.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCC-----------CccCcCchhhhccC-CC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAG-----------QDEYSIFPAQYSMD-IH   68 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~~~~-~~   68 (157)
                      +|++|||||||+++|++..+...+.+++... ......+    .+.+||++|           ++.+..++..+++. ++
T Consensus         7 ~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (190)
T 2cxx_A            7 AGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAK   81 (190)
T ss_dssp             EEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             ECCCCCCHHHHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhc
Confidence            6999999999999999998876666655422 2222333    578999999           56677777788887 88


Q ss_pred             EEEEEEECCChhhHHHH-HHHHHH--------HHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHH
Q psy1873          69 GYVLVYSITSHKSFEVV-QILYDK--------LLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRL  139 (157)
Q Consensus        69 ~~ilv~d~~~~~s~~~~-~~~~~~--------i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~  139 (157)
                      ++++||++.|..+++.+ ..|...        +........             +|+++|+||+|+...+   .+++..+
T Consensus        82 ~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~piilv~nK~Dl~~~~---~~~~~~~  145 (190)
T 2cxx_A           82 NIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD-------------IPTIVAVNKLDKIKNV---QEVINFL  145 (190)
T ss_dssp             GCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTT-------------CCEEEEEECGGGCSCH---HHHHHHH
T ss_pred             cCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcC-------------CceEEEeehHhccCcH---HHHHHHH
Confidence            88888999999999887 555542        333332222             9999999999997654   5678889


Q ss_pred             HHHhCCc-------EEEeccccCCC
Q psy1873         140 AESWKAG-------FVEASAKQDDY  157 (157)
Q Consensus       140 ~~~~~~~-------~~e~Sa~~~~~  157 (157)
                      ++.++++       ++++||++|+|
T Consensus       146 ~~~~~~~~~~~~~~~~~~Sa~~~~~  170 (190)
T 2cxx_A          146 AEKFEVPLSEIDKVFIPISAKFGDN  170 (190)
T ss_dssp             HHHHTCCGGGHHHHEEECCTTTCTT
T ss_pred             HHHhhhhhhccCCcEEEEecCCCCC
Confidence            9999875       69999999986

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.92  E-value=7.1e-25  Score=154.79  Aligned_cols=134  Identities=17%  Similarity=0.151  Sum_probs=99.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCch------hhhc--cCCCEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP------AQYS--MDIHGYV   71 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------~~~~--~~~~~~i   71 (157)
                      +|++|||||||+++|++..+.....+++. ......+..++  ..+.+||+||+..+...+      ..++  ..+|+++
T Consensus        11 vG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii   88 (258)
T 3a1s_A           11 AGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVI   88 (258)
T ss_dssp             ECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEE
T ss_pred             ECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEE
Confidence            69999999999999998776544334333 22233444444  678999999999887643      4555  5899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873          72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus        72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                      +|+|.++.++..   .|+.++.+.    .             +|+++|+||+|+...+.+.. +...+++.+|++++++|
T Consensus        89 ~V~D~t~~~~~~---~~~~~l~~~----~-------------~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~S  147 (258)
T 3a1s_A           89 LVADSVNPEQSL---YLLLEILEM----E-------------KKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTS  147 (258)
T ss_dssp             EEEETTSCHHHH---HHHHHHHTT----T-------------CCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECC
T ss_pred             EEeCCCchhhHH---HHHHHHHhc----C-------------CCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEE
Confidence            999999876543   355555443    2             99999999999865544442 47888999999999999


Q ss_pred             cccCCC
Q psy1873         152 AKQDDY  157 (157)
Q Consensus       152 a~~~~~  157 (157)
                      |++|+|
T Consensus       148 A~~g~g  153 (258)
T 3a1s_A          148 SVTGEG  153 (258)
T ss_dssp             TTTCTT
T ss_pred             eeCCcC
Confidence            999986

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.91  E-value=5.5e-24  Score=153.76  Aligned_cols=139  Identities=16%  Similarity=0.108  Sum_probs=105.9

Q ss_pred             CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCc----------CchhhhccCCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS----------IFPAQYSMDIH   68 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~~~~~~~~~~~   68 (157)
                      +|.+|||||||+|+|++.++.  .....|+..........+ ....+.+|||||+.++.          .....+++.+|
T Consensus        16 vG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD   94 (308)
T 3iev_A           16 VGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEAD   94 (308)
T ss_dssp             ECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCS
T ss_pred             ECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCC
Confidence            699999999999999998774  223333333333333443 14678999999997665          45567788999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--Cc
Q psy1873          69 GYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK--AG  146 (157)
Q Consensus        69 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~  146 (157)
                      ++++|+|+++..+++....|+..+...    .             .|+++|+||+|+...+.........+...++  .+
T Consensus        95 ~il~VvD~~~~~~~~~~~~~~~~l~~~----~-------------~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~  157 (308)
T 3iev_A           95 VILFMIDATEGWRPRDEEIYQNFIKPL----N-------------KPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTE  157 (308)
T ss_dssp             EEEEEEETTTBSCHHHHHHHHHHTGGG----C-------------CCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCC
T ss_pred             EEEEEEeCCCCCCchhHHHHHHHHHhc----C-------------CCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCe
Confidence            999999999998888877666665441    2             9999999999997445566677788888876  79


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      ++++||++|+|
T Consensus       158 i~~vSA~~g~g  168 (308)
T 3iev_A          158 IVPISALKGAN  168 (308)
T ss_dssp             EEECBTTTTBS
T ss_pred             EEEEeCCCCCC
Confidence            99999999986

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.91  E-value=7.6e-25  Score=154.46  Aligned_cols=134  Identities=14%  Similarity=0.138  Sum_probs=100.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcC----------chhhhc--cCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSI----------FPAQYS--MDI   67 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~--~~~   67 (157)
                      +|++|||||||+|+|++..+.....+++. +.....+..++.  .+.+||+||+..+..          +...++  ..+
T Consensus         7 vG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~   84 (256)
T 3iby_A            7 IGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEY   84 (256)
T ss_dssp             EESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHHHHSCC
T ss_pred             ECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCC
Confidence            69999999999999998876544445444 334566666764  679999999988774          455666  899


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcE
Q psy1873          68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGF  147 (157)
Q Consensus        68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  147 (157)
                      |++|+|+|.++.++...+..++..   .    .             .|+++|+||+|+...+.+.. ....+++.+++++
T Consensus        85 d~vi~VvDas~~~~~~~l~~~l~~---~----~-------------~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~v  143 (256)
T 3iby_A           85 DCIINVIDACHLERHLYLTSQLFE---L----G-------------KPVVVALNMMDIAEHRGISI-DTEKLESLLGCSV  143 (256)
T ss_dssp             SEEEEEEEGGGHHHHHHHHHHHTT---S----C-------------SCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCE
T ss_pred             CEEEEEeeCCCchhHHHHHHHHHH---c----C-------------CCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCE
Confidence            999999999997766554443322   1    2             99999999999865433322 2456788889999


Q ss_pred             EEeccccCCC
Q psy1873         148 VEASAKQDDY  157 (157)
Q Consensus       148 ~e~Sa~~~~~  157 (157)
                      +++||++|+|
T Consensus       144 i~~SA~~g~g  153 (256)
T 3iby_A          144 IPIQAHKNIG  153 (256)
T ss_dssp             EECBGGGTBS
T ss_pred             EEEECCCCCC
Confidence            9999999986

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.91  E-value=5.8e-25  Score=156.20  Aligned_cols=134  Identities=18%  Similarity=0.146  Sum_probs=98.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC------chhhhcc--CCCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI------FPAQYSM--DIHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~--~~~~~il   72 (157)
                      +|++|||||||+++|++........+++... .....++. ...+.+||+||+.++..      +...++.  .+|++++
T Consensus         9 vG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~-~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~   86 (272)
T 3b1v_A            9 IGNPNSGKTSLFNLITGHNQRVGNWPGVTVE-RKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILN   86 (272)
T ss_dssp             ECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS-CEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEE
T ss_pred             ECCCCCCHHHHHHHHHCCCCcccCCCCCcEE-EEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEE
Confidence            6999999999999999876433222322211 23334454 56789999999998863      4555665  6999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecc
Q psy1873          73 VYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA  152 (157)
Q Consensus        73 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  152 (157)
                      |+|.++.++.   ..|..++.+.    .             +|+++++||+|+...+.+. .+...+++.++++++++||
T Consensus        87 V~D~t~~e~~---~~~~~~l~~~----~-------------~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA  145 (272)
T 3b1v_A           87 VVDATNLERN---LYLTTQLIET----G-------------IPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSA  145 (272)
T ss_dssp             EEEGGGHHHH---HHHHHHHHHT----C-------------SCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBT
T ss_pred             EecCCchHhH---HHHHHHHHhc----C-------------CCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEc
Confidence            9999887654   3455555442    2             9999999999986544444 3567888999999999999


Q ss_pred             ccCCC
Q psy1873         153 KQDDY  157 (157)
Q Consensus       153 ~~~~~  157 (157)
                      ++|+|
T Consensus       146 ~~g~g  150 (272)
T 3b1v_A          146 LKQTG  150 (272)
T ss_dssp             TTTBS
T ss_pred             cCCCC
Confidence            99986

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.91  E-value=4.9e-25  Score=148.99  Aligned_cols=136  Identities=18%  Similarity=0.254  Sum_probs=88.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCC----------CccCcCchhhhccCC--
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAG----------QDEYSIFPAQYSMDI--   67 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~~~~~~~--   67 (157)
                      +|++|||||||+++|+++.+...+.++.+... .....+++   .+.+||++|          ++.+..++..+++.+  
T Consensus        29 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (195)
T 1svi_A           29 AGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREE  105 (195)
T ss_dssp             EEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTT
T ss_pred             ECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhc
Confidence            69999999999999999876655555555333 22233343   578999999          667777788888777  


Q ss_pred             -CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecH--HHHHH-HHHHh
Q psy1873          68 -HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISY--DEGKR-LAESW  143 (157)
Q Consensus        68 -~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~--~~~~~-~~~~~  143 (157)
                       +++++|+|++++.++.... ++ ..+..   ..             .|+++|+||+|+.+.+.+..  ++... ++...
T Consensus       106 ~~~~i~v~d~~~~~~~~~~~-~~-~~~~~---~~-------------~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~  167 (195)
T 1svi_A          106 LKAVVQIVDLRHAPSNDDVQ-MY-EFLKY---YG-------------IPVIVIATKADKIPKGKWDKHAKVVRQTLNIDP  167 (195)
T ss_dssp             EEEEEEEEETTSCCCHHHHH-HH-HHHHH---TT-------------CCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCT
T ss_pred             CCEEEEEEECCCCCCHHHHH-HH-HHHHH---cC-------------CCEEEEEECcccCChHHHHHHHHHHHHHHcccC
Confidence             9999999999987776542 11 11211   12             89999999999976555432  22222 33234


Q ss_pred             CCcEEEeccccCCC
Q psy1873         144 KAGFVEASAKQDDY  157 (157)
Q Consensus       144 ~~~~~e~Sa~~~~~  157 (157)
                      +++++++||++|+|
T Consensus       168 ~~~~~~~Sa~~~~g  181 (195)
T 1svi_A          168 EDELILFSSETKKG  181 (195)
T ss_dssp             TSEEEECCTTTCTT
T ss_pred             CCceEEEEccCCCC
Confidence            57999999999986

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.90  E-value=1.2e-23  Score=149.42  Aligned_cols=135  Identities=18%  Similarity=0.143  Sum_probs=101.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccce-EEEEEEECCeEEEEEEEeCCCCccCcC------chhhhc--cCCCEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENT-FVKTTRMNNQDYDLKLVDTAGQDEYSI------FPAQYS--MDIHGYV   71 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~~~~~i   71 (157)
                      +|++|||||||+++|++..+.....+++... ....+..++.  .+.+||+||+..+..      +...++  ..+|+++
T Consensus         9 vG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi   86 (271)
T 3k53_A            9 VGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIV   86 (271)
T ss_dssp             EECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEE
Confidence            6999999999999999887755555555533 3555666664  479999999998876      555666  6899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873          72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus        72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                      +|+|.++.+   ....|+.++.....                .|+++++||+|+.+.+.+... ...+++.++++++++|
T Consensus        87 ~v~D~~~~~---~~~~~~~~~~~~~~----------------~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~S  146 (271)
T 3k53_A           87 DIVDSTCLM---RNLFLTLELFEMEV----------------KNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTN  146 (271)
T ss_dssp             EEEEGGGHH---HHHHHHHHHHHTTC----------------CSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECB
T ss_pred             EEecCCcch---hhHHHHHHHHhcCC----------------CCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEE
Confidence            999998863   33345555544321                899999999998654443332 7778889999999999


Q ss_pred             cccCCC
Q psy1873         152 AKQDDY  157 (157)
Q Consensus       152 a~~~~~  157 (157)
                      |++|+|
T Consensus       147 a~~g~g  152 (271)
T 3k53_A          147 AKKGEG  152 (271)
T ss_dssp             GGGTBT
T ss_pred             eCCCCC
Confidence            999986

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.89  E-value=6.6e-24  Score=151.07  Aligned_cols=134  Identities=16%  Similarity=0.154  Sum_probs=97.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCc----------hhhh--ccCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF----------PAQY--SMDI   67 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~--~~~~   67 (157)
                      +|++|||||||+|+|++..+.....+++. +.....+..++  ..+.+||+||+.++...          ...+  ...+
T Consensus         9 vG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~   86 (274)
T 3i8s_A            9 IGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDA   86 (274)
T ss_dssp             EECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCC
T ss_pred             ECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCC
Confidence            59999999999999998877544445444 33355555555  35688999999887732          2223  3789


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcE
Q psy1873          68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGF  147 (157)
Q Consensus        68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  147 (157)
                      |++|+|+|.++.++...+..+   +.+.    .             +|+++|+||+|+.+.+.+. .....+++.+|+++
T Consensus        87 d~ii~VvD~~~~~~~~~~~~~---l~~~----~-------------~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~  145 (274)
T 3i8s_A           87 DLLINVVDASNLERNLYLTLQ---LLEL----G-------------IPCIVALNMLDIAEKQNIR-IEIDALSARLGCPV  145 (274)
T ss_dssp             SEEEEEEEGGGHHHHHHHHHH---HHHH----T-------------CCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCE
T ss_pred             CEEEEEecCCChHHHHHHHHH---HHhc----C-------------CCEEEEEECccchhhhhHH-HHHHHHHHhcCCCE
Confidence            999999999987655444333   3333    2             9999999999986544332 23567888899999


Q ss_pred             EEeccccCCC
Q psy1873         148 VEASAKQDDY  157 (157)
Q Consensus       148 ~e~Sa~~~~~  157 (157)
                      +++||++|+|
T Consensus       146 i~~SA~~g~g  155 (274)
T 3i8s_A          146 IPLVSTRGRG  155 (274)
T ss_dssp             EECCCGGGHH
T ss_pred             EEEEcCCCCC
Confidence            9999999875

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.89  E-value=1e-23  Score=158.87  Aligned_cols=137  Identities=21%  Similarity=0.119  Sum_probs=94.7

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCc----------cCcCchh-hhccCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD----------EYSIFPA-QYSMDI   67 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~-~~~~~~   67 (157)
                      ||.+|||||||+|+|++..+  ...+..|+.+.+...+..++..  +.+|||+|+.          .|..++. .+++.+
T Consensus       181 vG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~a  258 (436)
T 2hjg_A          181 IGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRS  258 (436)
T ss_dssp             ECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHC
T ss_pred             EcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHHHHHHHHhC
Confidence            69999999999999998776  3344444445456666777754  7899999973          3333333 477889


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHH-----HHHH
Q psy1873          68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKR-----LAES  142 (157)
Q Consensus        68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~-----~~~~  142 (157)
                      |++++|+|++++.+++.. .|+..+...    .             .|+++|+||+|+.+.+....++...     ++..
T Consensus       259 d~~llv~D~~~~~s~~~~-~~~~~~~~~----~-------------~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~  320 (436)
T 2hjg_A          259 EVVAVVLDGEEGIIEQDK-RIAGYAHEA----G-------------KAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL  320 (436)
T ss_dssp             SEEEEEEETTTCCCHHHH-HHHHHHHHT----T-------------CEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGG
T ss_pred             CEEEEEEcCCcCCcHHHH-HHHHHHHHc----C-------------CcEEEEEECccCCCcchHHHHHHHHHHHHhcccC
Confidence            999999999998888776 455554432    2             9999999999997655544333322     2222


Q ss_pred             hCCcEEEeccccCCC
Q psy1873         143 WKAGFVEASAKQDDY  157 (157)
Q Consensus       143 ~~~~~~e~Sa~~~~~  157 (157)
                      .+++++++||++|+|
T Consensus       321 ~~~~~~~~SA~tg~~  335 (436)
T 2hjg_A          321 DYAPILFMSALTKKR  335 (436)
T ss_dssp             TTSCEEECCTTTCTT
T ss_pred             CCCCEEEEecccCCC
Confidence            368999999999986

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.88  E-value=1e-22  Score=154.45  Aligned_cols=136  Identities=16%  Similarity=0.094  Sum_probs=81.5

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch--------hhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP--------AQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~~~~~~~   70 (157)
                      +|++|||||||+|+|++...  ...+..|+.+.+...+.+++  +.+.+|||+|+.++...+        ..+++.+|++
T Consensus       239 vG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~v  316 (476)
T 3gee_A          239 AGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLI  316 (476)
T ss_dssp             ECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCCSSCSEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEE
Confidence            69999999999999998753  34444454455566677777  568999999998766443        3468899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA  150 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  150 (157)
                      ++|+|.+++.+++++..+. .++....  .             .|+++|+||+|+.......   .+.+.+....+++++
T Consensus       317 l~VvD~s~~~s~~~~~~~~-~~l~~l~--~-------------~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~v  377 (476)
T 3gee_A          317 LYLLDLGTERLDDELTEIR-ELKAAHP--A-------------AKFLTVANKLDRAANADAL---IRAIADGTGTEVIGI  377 (476)
T ss_dssp             EEEEETTTCSSGGGHHHHH-HHHHHCT--T-------------SEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEEC
T ss_pred             EEEEECCCCcchhhhHHHH-HHHHhcC--C-------------CCEEEEEECcCCCCccchh---HHHHHhcCCCceEEE
Confidence            9999999998876433322 2222222  2             8999999999997655442   233444434789999


Q ss_pred             ccccCCC
Q psy1873         151 SAKQDDY  157 (157)
Q Consensus       151 Sa~~~~~  157 (157)
                      ||++|+|
T Consensus       378 SAktg~G  384 (476)
T 3gee_A          378 SALNGDG  384 (476)
T ss_dssp             BTTTTBS
T ss_pred             EECCCCC
Confidence            9999986

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.88  E-value=4.1e-23  Score=156.34  Aligned_cols=137  Identities=22%  Similarity=0.153  Sum_probs=98.9

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCC----------CccCcCchhh-hccCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAG----------QDEYSIFPAQ-YSMDI   67 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~~-~~~~~   67 (157)
                      +|.+|||||||+++|++...  ...+..++.+.+...+..++.  .+.+|||+|          ++.|..+... +++.+
T Consensus       201 vG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~a  278 (456)
T 4dcu_A          201 IGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRS  278 (456)
T ss_dssp             ECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHC
T ss_pred             ecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhC
Confidence            69999999999999997642  334444444444566677775  578999999          6666666554 78899


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh----
Q psy1873          68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW----  143 (157)
Q Consensus        68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~----  143 (157)
                      |++|+|+|.++... +....|+..+..    ..             .|++||+||+|+.+.+.+..++....++..    
T Consensus       279 d~~llviD~~~~~~-~~~~~~~~~~~~----~~-------------~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  340 (456)
T 4dcu_A          279 EVVAVVLDGEEGII-EQDKRIAGYAHE----AG-------------KAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL  340 (456)
T ss_dssp             SEEEEEEETTTCCC-HHHHHHHHHHHH----TT-------------CEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGG
T ss_pred             CEEEEEEeCCCCcC-HHHHHHHHHHHH----cC-------------CCEEEEEEChhcCCCchHHHHHHHHHHHHhcccC
Confidence            99999999987543 222334443333    12             899999999999877777777777777665    


Q ss_pred             -CCcEEEeccccCCC
Q psy1873         144 -KAGFVEASAKQDDY  157 (157)
Q Consensus       144 -~~~~~e~Sa~~~~~  157 (157)
                       +++++++||++|+|
T Consensus       341 ~~~~~~~~SA~~g~g  355 (456)
T 4dcu_A          341 DYAPILFMSALTKKR  355 (456)
T ss_dssp             TTSCEEECCTTTCTT
T ss_pred             CCCCEEEEcCCCCcC
Confidence             58999999999986

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.88  E-value=2.5e-23  Score=140.31  Aligned_cols=133  Identities=17%  Similarity=0.137  Sum_probs=92.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEE-EEEECCeEEEEEEEeCCC----------CccCcCchhhhccCC--
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVK-TTRMNNQDYDLKLVDTAG----------QDEYSIFPAQYSMDI--   67 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g----------~~~~~~~~~~~~~~~--   67 (157)
                      +|++|||||||+++|++..+ ..+.++.+..... ....+   ..+.+||++|          ++.+..++..+++.+  
T Consensus        29 ~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (195)
T 3pqc_A           29 VGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVN---SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWS  104 (195)
T ss_dssp             EEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEET---TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred             ECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEEC---CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcC
Confidence            69999999999999998873 2333444433322 22222   2467999999          566777777777766  


Q ss_pred             -CEEEEEEECCChhhH--HHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC--ceecHHHHHHHHHH
Q psy1873          68 -HGYVLVYSITSHKSF--EVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME--RMISYDEGKRLAES  142 (157)
Q Consensus        68 -~~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~--~~~~~~~~~~~~~~  142 (157)
                       +++++|+|.++..+.  ..+..|+...       .             .|+++|+||+|+.+.  .....++...++..
T Consensus       105 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~-------~-------------~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~  164 (195)
T 3pqc_A          105 LQMVFLLVDGRIPPQDSDLMMVEWMKSL-------N-------------IPFTIVLTKMDKVKMSERAKKLEEHRKVFSK  164 (195)
T ss_dssp             EEEEEEEEETTSCCCHHHHHHHHHHHHT-------T-------------CCEEEEEECGGGSCGGGHHHHHHHHHHHHHS
T ss_pred             ceEEEEEecCCCCCCHHHHHHHHHHHHc-------C-------------CCEEEEEEChhcCChHHHHHHHHHHHHHHhh
Confidence             899999999876433  3333443322       2             999999999998643  34445566677766


Q ss_pred             hC-CcEEEeccccCCC
Q psy1873         143 WK-AGFVEASAKQDDY  157 (157)
Q Consensus       143 ~~-~~~~e~Sa~~~~~  157 (157)
                      .+ ++++++||++|+|
T Consensus       165 ~~~~~~~~~Sa~~~~g  180 (195)
T 3pqc_A          165 YGEYTIIPTSSVTGEG  180 (195)
T ss_dssp             SCCSCEEECCTTTCTT
T ss_pred             cCCCceEEEecCCCCC
Confidence            44 7999999999986

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.88  E-value=2.2e-22  Score=144.88  Aligned_cols=135  Identities=22%  Similarity=0.168  Sum_probs=90.4

Q ss_pred             CCCCCCChhhhHhhhhcccccc--cccCCccceEEEEEEECCeEEEEEEEeCCCCccC--------cCchhhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVD--SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY--------SIFPAQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~~~~~~~~   70 (157)
                      ||.+|||||||+|+|++.++..  ....|+..........+  ...+.+|||||..+.        ......+++.+|++
T Consensus        13 vG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~i   90 (301)
T 1wf3_A           13 VGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAV   90 (301)
T ss_dssp             ECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEE
T ss_pred             ECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEE
Confidence            6999999999999999987742  22234333333333333  467899999998764        33455678999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHHhC-CcEE
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM-ISYDEGKRLAESWK-AGFV  148 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~-~~~~~~~~~~~~~~-~~~~  148 (157)
                      ++|+|++++.+..  ..|+...+..... .             .|+++|+||+|+..... + .+.+..+   .+ .+++
T Consensus        91 l~VvD~~~~~~~~--~~~i~~~l~~~~~-~-------------~p~ilV~NK~Dl~~~~~~~-~~~~~~~---~~~~~~~  150 (301)
T 1wf3_A           91 VWVVDLRHPPTPE--DELVARALKPLVG-K-------------VPILLVGNKLDAAKYPEEA-MKAYHEL---LPEAEPR  150 (301)
T ss_dssp             EEEEETTSCCCHH--HHHHHHHHGGGTT-T-------------SCEEEEEECGGGCSSHHHH-HHHHHHT---STTSEEE
T ss_pred             EEEEECCCCCChH--HHHHHHHHHhhcC-C-------------CCEEEEEECcccCCchHHH-HHHHHHh---cCcCcEE
Confidence            9999999875433  3455443333211 2             99999999999865433 2 1222222   23 4799


Q ss_pred             EeccccCCC
Q psy1873         149 EASAKQDDY  157 (157)
Q Consensus       149 e~Sa~~~~~  157 (157)
                      ++||++|+|
T Consensus       151 ~iSA~~g~g  159 (301)
T 1wf3_A          151 MLSALDERQ  159 (301)
T ss_dssp             ECCTTCHHH
T ss_pred             EEeCCCCCC
Confidence            999998864

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.87  E-value=1.6e-22  Score=145.66  Aligned_cols=124  Identities=15%  Similarity=0.128  Sum_probs=103.8

Q ss_pred             hhHhhhhccccc-ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh-hHHHHHH
Q psy1873          10 SLSIQFVDGQFV-DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK-SFEVVQI   87 (157)
Q Consensus        10 sli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~   87 (157)
                      +|+.+++.+.|. ..+.||+++.+...+..++   .+++||+  +++|..+++.+++++|++|+|||++++. +++.+..
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~  106 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDK  106 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHH
Confidence            789999999998 8899999977654433333   6799999  9999999999999999999999999998 7888999


Q ss_pred             HHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcEEEeccccCCC
Q psy1873          88 LYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK--AGFVEASAKQDDY  157 (157)
Q Consensus        88 ~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~  157 (157)
                      |+..+...    .             +|++||+||+|+.+.+.+  +++..+++.++  +++++|||++|+|
T Consensus       107 ~l~~~~~~----~-------------~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~g  159 (301)
T 1u0l_A          107 FLVLAEKN----E-------------LETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMG  159 (301)
T ss_dssp             HHHHHHHT----T-------------CEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred             HHHHHHHC----C-------------CCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcC
Confidence            98866431    2             999999999999765443  55777888888  8999999999986

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.87  E-value=3.2e-21  Score=141.84  Aligned_cols=138  Identities=19%  Similarity=0.164  Sum_probs=99.8

Q ss_pred             CCCCCCChhhhHhhhhcccccc-cccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC---------chhhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVD-SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI---------FPAQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~~~~~~~   70 (157)
                      +|++|||||||+++|++..+.. .+..+........+..+  ...+.+|||+|......         ....+...+|++
T Consensus       173 vG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~i  250 (357)
T 2e87_A          173 AGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLI  250 (357)
T ss_dssp             ECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEE
Confidence            6999999999999999876532 22222222222333333  35689999999865432         111344568999


Q ss_pred             EEEEECCChh--hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEE
Q psy1873          71 VLVYSITSHK--SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFV  148 (157)
Q Consensus        71 ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  148 (157)
                      ++|+|++++.  +++....|+..+.....  .             .|+++|+||+|+.....+  +++..++...+++++
T Consensus       251 llV~D~s~~~~~~~~~~~~~~~~i~~~~~--~-------------~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~  313 (357)
T 2e87_A          251 IYIFDPSEHCGFPLEEQIHLFEEVHGEFK--D-------------LPFLVVINKIDVADEENI--KRLEKFVKEKGLNPI  313 (357)
T ss_dssp             EEEECTTCTTSSCHHHHHHHHHHHHHHTT--T-------------SCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCE
T ss_pred             EEEEeCCccccCCHHHHHHHHHHHHHhcC--C-------------CCEEEEEECcccCChHHH--HHHHHHHHhcCCCeE
Confidence            9999999887  77888888888876543  2             999999999999664433  456667778889999


Q ss_pred             EeccccCCC
Q psy1873         149 EASAKQDDY  157 (157)
Q Consensus       149 e~Sa~~~~~  157 (157)
                      ++||++|+|
T Consensus       314 ~iSA~~g~g  322 (357)
T 2e87_A          314 KISALKGTG  322 (357)
T ss_dssp             ECBTTTTBT
T ss_pred             EEeCCCCcC
Confidence            999999986

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.87  E-value=1e-22  Score=152.27  Aligned_cols=134  Identities=23%  Similarity=0.251  Sum_probs=95.2

Q ss_pred             CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch-------hhhccCCCEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP-------AQYSMDIHGYV   71 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------~~~~~~~~~~i   71 (157)
                      +|..|+|||||+++|++..+.  ..+..++.+.....+.+.+.. .+.+|||+|+.++..+.       ..++..+|++|
T Consensus        40 vG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vl  118 (423)
T 3qq5_A           40 AGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGI  118 (423)
T ss_dssp             ECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEE
T ss_pred             ECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEE
Confidence            699999999999999988762  233333334445666666543 68999999999887663       34788999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873          72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus        72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                      +|+|++..+.   ...|+..+.+.    .             +|+++|+||+|+...+..  +....+++.++++++++|
T Consensus       119 lVvD~~~~~~---~~~~l~~l~~~----~-------------~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vS  176 (423)
T 3qq5_A          119 LVTDSAPTPY---EDDVVNLFKEM----E-------------IPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVS  176 (423)
T ss_dssp             EECSSSCCHH---HHHHHHHHHHT----T-------------CCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCS
T ss_pred             EEEeCCChHH---HHHHHHHHHhc----C-------------CCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEE
Confidence            9999843333   34555555444    2             999999999999765544  667777788899999999


Q ss_pred             cccCCC
Q psy1873         152 AKQDDY  157 (157)
Q Consensus       152 a~~~~~  157 (157)
                      |++|+|
T Consensus       177 Aktg~g  182 (423)
T 3qq5_A          177 ALQKKG  182 (423)
T ss_dssp             SCCTTS
T ss_pred             CCCCCC
Confidence            999986

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.6e-22  Score=136.39  Aligned_cols=113  Identities=19%  Similarity=0.266  Sum_probs=84.7

Q ss_pred             CCCCCCChhhhHhhhhcccccc---cccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccC----CCEEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVD---SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMD----IHGYVLV   73 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----~~~~ilv   73 (157)
                      +|++|||||||+++|++..+..   .+.+++..        +...+.+.+||++|+..+...+..++..    +|++|+|
T Consensus        54 vG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v  125 (193)
T 2ged_A           54 AGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA--------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM  125 (193)
T ss_dssp             ECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcccccCCCceee--------eecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEE
Confidence            6999999999999999877643   22222221        1134678999999999998888888776    8999999


Q ss_pred             EECC-ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee
Q psy1873          74 YSIT-SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI  131 (157)
Q Consensus        74 ~d~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~  131 (157)
                      ||++ ++++++.+..|+..++.......          ...+|+++|+||+|+.+.+.+
T Consensus       126 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~p~ilv~nK~Dl~~~~~~  174 (193)
T 2ged_A          126 VDSTVDPKKLTTTAEFLVDILSITESSC----------ENGIDILIACNKSELFTARPP  174 (193)
T ss_dssp             EETTCCHHHHHHHHHHHHHHHHHHHHHS----------TTCCCEEEEEECTTSTTCCCH
T ss_pred             EECCCCchhHHHHHHHHHHHHhhhhhcc----------ccCCCEEEEEEchHhcCCCCH
Confidence            9999 99999999999988887653200          012999999999999765543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.87  E-value=2.3e-22  Score=146.82  Aligned_cols=140  Identities=16%  Similarity=0.186  Sum_probs=102.3

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCCccceEEEEEEECCeEEEEEEEeCCCC----ccCcCchhhhccC---CCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQ----DEYSIFPAQYSMD---IHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~---~~~~il   72 (157)
                      ||.+|||||||+++|++.+.. ..+..++.......+.+++. ..+.+||++|.    ..+..+...+++.   ++++|+
T Consensus       164 vG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~  242 (342)
T 1lnz_A          164 VGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVH  242 (342)
T ss_dssp             ESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEE
T ss_pred             eCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEE
Confidence            699999999999999987642 33333332222333455442 36899999995    4555666667665   999999


Q ss_pred             EEECCC---hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcE
Q psy1873          73 VYSITS---HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK--AGF  147 (157)
Q Consensus        73 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~  147 (157)
                      |+|+++   +++++.+..|+.++......            +...|++||+||+|+...+    +....+++.++  +++
T Consensus       243 VvD~s~~~~~~~~~~~~~~~~eL~~~~~~------------l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v  306 (342)
T 1lnz_A          243 VIDMSGLEGRDPYDDYLTINQELSEYNLR------------LTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPV  306 (342)
T ss_dssp             EEESSCSSCCCHHHHHHHHHHHHHHSCSS------------TTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCB
T ss_pred             EEECCcccccChHHHHHHHHHHHHHhhhh------------hcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCE
Confidence            999998   78899998888888765421            1239999999999986532    34666777776  789


Q ss_pred             EEeccccCCC
Q psy1873         148 VEASAKQDDY  157 (157)
Q Consensus       148 ~e~Sa~~~~~  157 (157)
                      +++||++++|
T Consensus       307 ~~iSA~tg~g  316 (342)
T 1lnz_A          307 FPISAVTREG  316 (342)
T ss_dssp             CCCSSCCSST
T ss_pred             EEEECCCCcC
Confidence            9999999986

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.86  E-value=9.2e-22  Score=148.30  Aligned_cols=133  Identities=22%  Similarity=0.166  Sum_probs=87.6

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccC---------cCchhhhccCCCE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY---------SIFPAQYSMDIHG   69 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~~~~~   69 (157)
                      ||.+|||||||+|+|++.+.  ...+..++.+.....+.+++..  +.+|||+|++..         ......+++++|+
T Consensus         7 vG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~   84 (439)
T 1mky_A            7 VGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMIREADL   84 (439)
T ss_dssp             ECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSE
T ss_pred             ECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHHHhCCE
Confidence            69999999999999998764  2333333334446667777754  688999998753         2345668999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHH-HHHHHHhCC-cE
Q psy1873          70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEG-KRLAESWKA-GF  147 (157)
Q Consensus        70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~  147 (157)
                      +|+|+|+++..+...  .++..++...   .             +|+++|+||+|+...  . ..+. ..+. .+++ ++
T Consensus        85 il~V~D~~~~~~~~d--~~i~~~l~~~---~-------------~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~  142 (439)
T 1mky_A           85 VLFVVDGKRGITKED--ESLADFLRKS---T-------------VDTILVANKAENLRE--F-EREVKPELY-SLGFGEP  142 (439)
T ss_dssp             EEEEEETTTCCCHHH--HHHHHHHHHH---T-------------CCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSC
T ss_pred             EEEEEECCCCCCHHH--HHHHHHHHHc---C-------------CCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCE
Confidence            999999987644332  2333333332   2             899999999998432  1 1223 3443 5677 79


Q ss_pred             EEeccccCCC
Q psy1873         148 VEASAKQDDY  157 (157)
Q Consensus       148 ~e~Sa~~~~~  157 (157)
                      +++||++|+|
T Consensus       143 ~~iSA~~g~g  152 (439)
T 1mky_A          143 IPVSAEHNIN  152 (439)
T ss_dssp             EECBTTTTBS
T ss_pred             EEEeccCCCC
Confidence            9999999986

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.86  E-value=7.6e-22  Score=149.78  Aligned_cols=132  Identities=21%  Similarity=0.168  Sum_probs=96.7

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCc-cCcC--------chhhhccCCCE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD-EYSI--------FPAQYSMDIHG   69 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~~~~~~~   69 (157)
                      +|.+|||||||+|+|++..+  ...+..|+.+.....+.+++  ..+.+|||+|.. .+..        ....+++.+|+
T Consensus       249 vG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~  326 (482)
T 1xzp_A          249 VGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADI  326 (482)
T ss_dssp             ECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSE
T ss_pred             ECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccE
Confidence            69999999999999998754  44555555555566777777  457999999987 6543        13457889999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEE
Q psy1873          70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVE  149 (157)
Q Consensus        70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e  149 (157)
                      +|+|+|++++.+++... ++..    ..  .             .|+++|+||+|+.+.  +..++...++. .++++++
T Consensus       327 vl~VvD~s~~~s~~~~~-il~~----l~--~-------------~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~  383 (482)
T 1xzp_A          327 VLFVLDASSPLDEEDRK-ILER----IK--N-------------KRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVK  383 (482)
T ss_dssp             EEEEEETTSCCCHHHHH-HHHH----HT--T-------------SSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEE
T ss_pred             EEEEecCCCCCCHHHHH-HHHH----hc--C-------------CCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEE
Confidence            99999999988876542 2222    21  2             899999999999643  34444544432 3479999


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      +||++|+|
T Consensus       384 iSAktg~G  391 (482)
T 1xzp_A          384 ISALKGEG  391 (482)
T ss_dssp             EEGGGTCC
T ss_pred             EECCCCCC
Confidence            99999986

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.86  E-value=1.2e-22  Score=139.95  Aligned_cols=139  Identities=14%  Similarity=0.068  Sum_probs=85.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEEC-CeEEEEEEEeCCCCc----------cCcCchhhhccC--
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMN-NQDYDLKLVDTAGQD----------EYSIFPAQYSMD--   66 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~----------~~~~~~~~~~~~--   66 (157)
                      +|.+|||||||+++|++..+......+.+... .....+. .....+.+|||+|..          .+..+...+++.  
T Consensus        35 ~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (223)
T 4dhe_A           35 AGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRP  114 (223)
T ss_dssp             EESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCT
T ss_pred             EcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCc
Confidence            69999999999999998863222112222111 2222333 334678999999943          334455566655  


Q ss_pred             -CCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec--HHHHHHHHHH-
Q psy1873          67 -IHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS--YDEGKRLAES-  142 (157)
Q Consensus        67 -~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~--~~~~~~~~~~-  142 (157)
                       +|++++|+|.+++.+.. ...++..+..    ..             .|+++|+||+|+.....+.  .++....... 
T Consensus       115 ~~d~vi~v~d~~~~~~~~-~~~~~~~l~~----~~-------------~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~  176 (223)
T 4dhe_A          115 QLCGMILMMDARRPLTEL-DRRMIEWFAP----TG-------------KPIHSLLTKCDKLTRQESINALRATQKSLDAY  176 (223)
T ss_dssp             TEEEEEEEEETTSCCCHH-HHHHHHHHGG----GC-------------CCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             CcCEEEEEEeCCCCCCHH-HHHHHHHHHh----cC-------------CCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence             67899999998753321 2223333322    22             8999999999986644321  1222222332 


Q ss_pred             ------hCCcEEEeccccCCC
Q psy1873         143 ------WKAGFVEASAKQDDY  157 (157)
Q Consensus       143 ------~~~~~~e~Sa~~~~~  157 (157)
                            .+++++++||++|+|
T Consensus       177 ~~~~~~~~~~~~~~SA~~g~g  197 (223)
T 4dhe_A          177 RDAGYAGKLTVQLFSALKRTG  197 (223)
T ss_dssp             HHHTCCSCEEEEEEBTTTTBS
T ss_pred             hhcccCCCCeEEEeecCCCcC
Confidence                  456999999999986

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.85  E-value=2.3e-22  Score=148.07  Aligned_cols=140  Identities=19%  Similarity=0.173  Sum_probs=80.3

Q ss_pred             CCCCCCChhhhHhhhhcc-ccccccc--------CCccceE-EEEEEECCeEEEEEEEeCCCC-------ccCcCchh--
Q psy1873           1 MGYRSVGKSSLSIQFVDG-QFVDSYD--------PTIENTF-VKTTRMNNQDYDLKLVDTAGQ-------DEYSIFPA--   61 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~-~~~~~~~--------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~-------~~~~~~~~--   61 (157)
                      ||++|+|||||++++.+. .+...+.        +|++..+ ...+..++....+.+||++|+       +.+..+..  
T Consensus        43 vG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i  122 (361)
T 2qag_A           43 VGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYI  122 (361)
T ss_dssp             CCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHH
T ss_pred             EcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHH
Confidence            799999999999997654 3333322        3444322 333344566778999999998       77777776  


Q ss_pred             -----hhccCCCE-----------EEEEEECCC-hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCC
Q psy1873          62 -----QYSMDIHG-----------YVLVYSITS-HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD  124 (157)
Q Consensus        62 -----~~~~~~~~-----------~ilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~D  124 (157)
                           .+++.+++           .+++|++++ ..++..+...+...   ... .             +|+++|+||+|
T Consensus       123 ~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~---l~~-~-------------~piIlV~NK~D  185 (361)
T 2qag_A          123 DEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKA---IHN-K-------------VNIVPVIAKAD  185 (361)
T ss_dssp             HHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHH---TCS---------------SCEEEEEECCS
T ss_pred             HHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHH---hcc-C-------------CCEEEEEECCC
Confidence                 55554443           357777776 56666665322222   222 2             99999999999


Q ss_pred             CCCCceecH--HHHHHHHHHhCCcEEEeccccCCC
Q psy1873         125 LHMERMISY--DEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus       125 l~~~~~~~~--~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +...+.+..  .++..++..++++++++||++|+|
T Consensus       186 l~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~  220 (361)
T 2qag_A          186 TLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE  220 (361)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCC-CCSCCCC------
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc
Confidence            977666554  567778888899999999999864

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.84  E-value=2.3e-20  Score=134.37  Aligned_cols=136  Identities=21%  Similarity=0.148  Sum_probs=92.8

Q ss_pred             CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCc---------cCcCchhhhccCCCE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD---------EYSIFPAQYSMDIHG   69 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~~~~~~~   69 (157)
                      ||++|||||||++++++..+.  .....++.......+..++  ..+.+|||+|..         .+.......++.+|+
T Consensus        14 vG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~   91 (301)
T 1ega_A           14 VGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVEL   91 (301)
T ss_dssp             ECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEE
T ss_pred             ECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCE
Confidence            699999999999999988763  2222233332233333343  568899999987         233445677889999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEE
Q psy1873          70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFV  148 (157)
Q Consensus        70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~  148 (157)
                      +++|+|.++   +.....|+...+..   ..             .|+++++||+|+...+....+....++..++. .++
T Consensus        92 vl~Vvd~~~---~~~~~~~i~~~l~~---~~-------------~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i  152 (301)
T 1ega_A           92 VIFVVEGTR---WTPDDEMVLNKLRE---GK-------------APVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIV  152 (301)
T ss_dssp             EEEEEETTC---CCHHHHHHHHHHHS---SS-------------SCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEE
T ss_pred             EEEEEeCCC---CCHHHHHHHHHHHh---cC-------------CCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceE
Confidence            999999977   33333454443322   12             89999999999865333333455666666776 799


Q ss_pred             EeccccCCC
Q psy1873         149 EASAKQDDY  157 (157)
Q Consensus       149 e~Sa~~~~~  157 (157)
                      ++||++|+|
T Consensus       153 ~iSA~~g~~  161 (301)
T 1ega_A          153 PISAETGLN  161 (301)
T ss_dssp             ECCTTTTTT
T ss_pred             EEECCCCCC
Confidence            999999976

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.83  E-value=3.2e-21  Score=146.84  Aligned_cols=141  Identities=13%  Similarity=0.065  Sum_probs=88.2

Q ss_pred             CCCCCCChhhhHhhhhcccc--cc-----------------------------cccCCccceEEEEEEECCeEEEEEEEe
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VD-----------------------------SYDPTIENTFVKTTRMNNQDYDLKLVD   49 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~~i~D   49 (157)
                      +|.+++|||||+++|+....  ..                             .....+... .....++.....+.+||
T Consensus        39 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~-~~~~~~~~~~~~~~iiD  117 (483)
T 3p26_A           39 LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVS-ICTSHFSTHRANFTIVD  117 (483)
T ss_dssp             ESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCC-CCEEEEECSSCEEEEEC
T ss_pred             ECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceE-eeeEEEecCCceEEEEE
Confidence            69999999999999976511  10                             000011100 11122333456789999


Q ss_pred             CCCCccCcCchhhhccCCCEEEEEEECCChhhHHHH-----HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCC
Q psy1873          50 TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVV-----QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD  124 (157)
Q Consensus        50 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~D  124 (157)
                      ++|+++|......++..+|++|+|+|+++..++..+     ..++..+.....  .             .|++||+||+|
T Consensus       118 TPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~--~-------------~~iIvviNK~D  182 (483)
T 3p26_A          118 APGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG--I-------------HNLIIAMNKMD  182 (483)
T ss_dssp             CCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT--C-------------CCEEEEEECGG
T ss_pred             CCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC--C-------------CcEEEEEECcC
Confidence            999999999999999999999999999987654321     112222222221  1             56999999999


Q ss_pred             CCCCceecHHHH----HHHHHHh-----CCcEEEeccccCCC
Q psy1873         125 LHMERMISYDEG----KRLAESW-----KAGFVEASAKQDDY  157 (157)
Q Consensus       125 l~~~~~~~~~~~----~~~~~~~-----~~~~~e~Sa~~~~~  157 (157)
                      +.+.++...++.    ..+....     +++++++||++|+|
T Consensus       183 l~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~g  224 (483)
T 3p26_A          183 NVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEG  224 (483)
T ss_dssp             GGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTT
T ss_pred             cccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCC
Confidence            976444333333    3333333     46899999999987

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.83  E-value=1.3e-20  Score=142.09  Aligned_cols=137  Identities=23%  Similarity=0.151  Sum_probs=88.4

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch------------hhhccC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP------------AQYSMD   66 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------------~~~~~~   66 (157)
                      ||++|||||||+|++++...  ...+..++.+.....+.+++.  .+.+||++|..++....            ..+++.
T Consensus       186 vG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~  263 (439)
T 1mky_A          186 VGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEK  263 (439)
T ss_dssp             ECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHHHHHHHhh
Confidence            69999999999999998765  334444444444566778886  46889999975433221            235678


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHH-----HHH
Q psy1873          67 IHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKR-----LAE  141 (157)
Q Consensus        67 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~-----~~~  141 (157)
                      +|++++++|.++..+.+..  ++...+...   .             .|+++++||+|+.+.+....++...     +..
T Consensus       264 ad~vllv~d~~~~~~~~~~--~i~~~l~~~---~-------------~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~  325 (439)
T 1mky_A          264 ADVVVIVLDATQGITRQDQ--RMAGLMERR---G-------------RASVVVFNKWDLVVHREKRYDEFTKLFREKLYF  325 (439)
T ss_dssp             CSEEEEEEETTTCCCHHHH--HHHHHHHHT---T-------------CEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGG
T ss_pred             CCEEEEEEeCCCCCCHHHH--HHHHHHHHc---C-------------CCEEEEEECccCCCchhhHHHHHHHHHHHHhcc
Confidence            8999999999987665542  222332222   2             8999999999987655443333322     222


Q ss_pred             HhCCcEEEeccccCCC
Q psy1873         142 SWKAGFVEASAKQDDY  157 (157)
Q Consensus       142 ~~~~~~~e~Sa~~~~~  157 (157)
                      ..+++++++||++|.|
T Consensus       326 ~~~~~~~~~SA~~g~g  341 (439)
T 1mky_A          326 IDYSPLIFTSADKGWN  341 (439)
T ss_dssp             GTTSCEEECBTTTTBS
T ss_pred             CCCCcEEEEECCCCCC
Confidence            3357999999999986

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.83  E-value=1.1e-20  Score=138.52  Aligned_cols=116  Identities=16%  Similarity=0.154  Sum_probs=92.5

Q ss_pred             CCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC----------hhhHHHHHHHHHHHHHH
Q psy1873          26 PTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS----------HKSFEVVQILYDKLLDM   95 (157)
Q Consensus        26 ~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~   95 (157)
                      +|+|.. ...+.++  .+.+++||++||++++.+|..++++++++|+|||+++          .+++++...|+..+...
T Consensus       179 ~T~Gi~-~~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~  255 (353)
T 1cip_A          179 KTTGIV-ETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN  255 (353)
T ss_dssp             CCCSEE-EEEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred             ceeceE-EEEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC
Confidence            444422 2344554  4789999999999999999999999999999999999          56799999999998875


Q ss_pred             hccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc---------------eecHHHHHHHHH-----------HhCCcEEE
Q psy1873          96 TGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER---------------MISYDEGKRLAE-----------SWKAGFVE  149 (157)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~---------------~~~~~~~~~~~~-----------~~~~~~~e  149 (157)
                      .....             +|++|+|||+|+...+               .++.+++..++.           ..++.+++
T Consensus       256 ~~~~~-------------~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~e  322 (353)
T 1cip_A          256 KWFTD-------------TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHF  322 (353)
T ss_dssp             GGGTT-------------SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEE
T ss_pred             ccccC-------------CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEE
Confidence            43233             9999999999985332               367788888887           35679999


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      |||++++|
T Consensus       323 tSA~~~~n  330 (353)
T 1cip_A          323 TCATDTKN  330 (353)
T ss_dssp             CCTTCHHH
T ss_pred             EECcCchh
Confidence            99999865

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.82  E-value=4.9e-21  Score=144.75  Aligned_cols=131  Identities=23%  Similarity=0.207  Sum_probs=83.9

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchh--------hhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA--------QYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--------~~~~~~~~~   70 (157)
                      +|++|||||||+|+|++..+  ......|..+.....+.+++.  .+.+|||+|..++.....        .+++.+|++
T Consensus       230 vG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~v  307 (462)
T 3geh_A          230 VGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQAANTADLV  307 (462)
T ss_dssp             EECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CCCCSCSEE
T ss_pred             EcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhhhhcCCEE
Confidence            69999999999999998754  333334444444555667774  568999999866554332        367889999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA  150 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  150 (157)
                      ++|+|.+++.+.+. ..|+..+    ..               .|+++|+||+|+.....+.  ....+.  .+.+++++
T Consensus       308 l~VvD~s~~~~~~~-~~i~~~l----~~---------------~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~i  363 (462)
T 3geh_A          308 LLTIDAATGWTTGD-QEIYEQV----KH---------------RPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHT  363 (462)
T ss_dssp             EEEEETTTCSCHHH-HHHHHHH----TT---------------SCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEE
T ss_pred             EEEeccCCCCCHHH-HHHHHhc----cC---------------CcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEE
Confidence            99999998766544 3333332    11               7899999999997654443  111111  35689999


Q ss_pred             ccccCCC
Q psy1873         151 SAKQDDY  157 (157)
Q Consensus       151 Sa~~~~~  157 (157)
                      ||++|+|
T Consensus       364 SAktg~G  370 (462)
T 3geh_A          364 AAAQKQG  370 (462)
T ss_dssp             BTTTTBS
T ss_pred             ECCCCCC
Confidence            9999986

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.82  E-value=1.6e-21  Score=146.89  Aligned_cols=132  Identities=19%  Similarity=0.131  Sum_probs=82.2

Q ss_pred             CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCc--------cCcCchhhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD--------EYSIFPAQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~~~~~   70 (157)
                      ||.+|||||||+|+|++..+.  .....++.+.....+.+++  ..+.+|||+|+.        .+...+..+++.+|++
T Consensus         9 vG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~i   86 (436)
T 2hjg_A            9 VGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVI   86 (436)
T ss_dssp             ECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHHHCSEE
T ss_pred             ECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEE
Confidence            699999999999999987653  2222222232233333334  468999999986        4555677788999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEE
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVE  149 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e  149 (157)
                      |+|+|.+++.+...  .|+..++...   .             .|+++|+||+|+...+.    +...+. .+++ ++++
T Consensus        87 l~vvD~~~~~~~~d--~~~~~~l~~~---~-------------~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~  143 (436)
T 2hjg_A           87 IFMVNGREGVTAAD--EEVAKILYRT---K-------------KPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYP  143 (436)
T ss_dssp             EEEEETTTCSCHHH--HHHHHHHTTC---C-------------SCEEEEEECCCC---------CCCSSG-GGSSCCCEE
T ss_pred             EEEEeCCCCCCHHH--HHHHHHHHHc---C-------------CCEEEEEECccCccchh----hHHHHH-HcCCCCeEE
Confidence            99999988766543  4454544321   2             89999999999864321    111222 4566 8999


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      +||++|.|
T Consensus       144 iSA~~g~g  151 (436)
T 2hjg_A          144 ISGTHGLG  151 (436)
T ss_dssp             CBTTTTBT
T ss_pred             EeCcCCCC
Confidence            99999986

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.82  E-value=9.9e-20  Score=137.05  Aligned_cols=140  Identities=20%  Similarity=0.140  Sum_probs=92.0

Q ss_pred             CCCCCCChhhhHhhhhcccc---cc---------cccCCccceE--------------------EEEEEECCeEEEEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF---VD---------SYDPTIENTF--------------------VKTTRMNNQDYDLKLV   48 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~---~~---------~~~~t~~~~~--------------------~~~~~~~~~~~~~~i~   48 (157)
                      +|..++|||||+++|++...   ..         ...+|++..+                    .....+......+.+|
T Consensus        30 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~~~~ii  109 (434)
T 1zun_B           30 CGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIA  109 (434)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSEEEEEE
T ss_pred             EECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCceEEEE
Confidence            69999999999999986531   10         0112211100                    0111222334678999


Q ss_pred             eCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q psy1873          49 DTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME  128 (157)
Q Consensus        49 D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~  128 (157)
                      |+||+++|......++..+|++|+|+|+++... .+..+++..+. ... .              .|+++++||+|+.+.
T Consensus       110 DtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~-~~~-~--------------~~iIvviNK~Dl~~~  172 (434)
T 1zun_B          110 DTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIAS-LLG-I--------------KHIVVAINKMDLNGF  172 (434)
T ss_dssp             ECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHH-HTT-C--------------CEEEEEEECTTTTTS
T ss_pred             ECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHH-HcC-C--------------CeEEEEEEcCcCCcc
Confidence            999999998888888999999999999998643 23334443332 221 0              469999999999653


Q ss_pred             ce--e--cHHHHHHHHHHhC-----CcEEEeccccCCC
Q psy1873         129 RM--I--SYDEGKRLAESWK-----AGFVEASAKQDDY  157 (157)
Q Consensus       129 ~~--~--~~~~~~~~~~~~~-----~~~~e~Sa~~~~~  157 (157)
                      .+  +  ..++...+++.++     ++++++||++|+|
T Consensus       173 ~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~g  210 (434)
T 1zun_B          173 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDN  210 (434)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTT
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCC
Confidence            21  1  2355667777777     6899999999986

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.82  E-value=2.3e-21  Score=142.05  Aligned_cols=104  Identities=13%  Similarity=0.134  Sum_probs=81.5

Q ss_pred             eEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECC----------ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCC
Q psy1873          41 QDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSIT----------SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSC  110 (157)
Q Consensus        41 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  110 (157)
                      +.+.+++||++||++++.+|..++++++++|+|||++          +.+++++...|+..+........          
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~----------  250 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK----------  250 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS----------
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC----------
Confidence            6789999999999999999999999999999999998          88899999999999876543223          


Q ss_pred             CCCCcEEEEEeCCCCCCCce--e-------------------cHHHHHHHHHH----------------hCCcEEEeccc
Q psy1873         111 VSSVPIVLVGNKKDLHMERM--I-------------------SYDEGKRLAES----------------WKAGFVEASAK  153 (157)
Q Consensus       111 ~~~~p~~vv~nK~Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~e~Sa~  153 (157)
                         +|++|+|||+|+..++.  +                   ..+++..++..                ..+.+++|||+
T Consensus       251 ---~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~  327 (354)
T 2xtz_A          251 ---TSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTAL  327 (354)
T ss_dssp             ---CEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTT
T ss_pred             ---CeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEee
Confidence               99999999999843221  1                   24667776543                12457999999


Q ss_pred             cCCC
Q psy1873         154 QDDY  157 (157)
Q Consensus       154 ~~~~  157 (157)
                      +++|
T Consensus       328 d~~n  331 (354)
T 2xtz_A          328 DQKL  331 (354)
T ss_dssp             CHHH
T ss_pred             cchh
Confidence            9865

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.81  E-value=2e-19  Score=134.18  Aligned_cols=141  Identities=14%  Similarity=0.100  Sum_probs=94.1

Q ss_pred             CCCCCCChhhhHhhhhccccccc---ccCCccc--------eEEEE-----EEE---CCeEEEEEEEeCCCCccCcCchh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDS---YDPTIEN--------TFVKT-----TRM---NNQDYDLKLVDTAGQDEYSIFPA   61 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~---~~~t~~~--------~~~~~-----~~~---~~~~~~~~i~D~~g~~~~~~~~~   61 (157)
                      +|.+++|||||+++|++......   ...+.+.        .+...     ...   ......+.+||+||+++|.....
T Consensus        14 vG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~~~~~~~   93 (403)
T 3sjy_A           14 VGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATML   93 (403)
T ss_dssp             ECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGGGHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHHHHHHHH
Confidence            69999999999999987432110   0000000        00000     000   11236789999999999999999


Q ss_pred             hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec--HHHHHHH
Q psy1873          62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS--YDEGKRL  139 (157)
Q Consensus        62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~--~~~~~~~  139 (157)
                      ..+..+|++|+|+|.++..++.+...|+..+.....                .|+++++||+|+.+.....  .++...+
T Consensus        94 ~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~----------------~~iivviNK~Dl~~~~~~~~~~~~i~~~  157 (403)
T 3sjy_A           94 SGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV----------------KNLIIVQNKVDVVSKEEALSQYRQIKQF  157 (403)
T ss_dssp             HHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC----------------CCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC----------------CCEEEEEECccccchHHHHHHHHHHHHH
Confidence            999999999999999998777777777765543321                5899999999986543221  1222333


Q ss_pred             HHHh---CCcEEEeccccCCC
Q psy1873         140 AESW---KAGFVEASAKQDDY  157 (157)
Q Consensus       140 ~~~~---~~~~~e~Sa~~~~~  157 (157)
                      ....   +++++++||++|+|
T Consensus       158 l~~~~~~~~~ii~vSA~~g~g  178 (403)
T 3sjy_A          158 TKGTWAENVPIIPVSALHKIN  178 (403)
T ss_dssp             HTTSTTTTCCEEECBTTTTBS
T ss_pred             HHhhCCCCCEEEEEECCCCcC
Confidence            3222   57899999999986

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.81  E-value=1.4e-20  Score=141.61  Aligned_cols=141  Identities=18%  Similarity=0.196  Sum_probs=95.6

Q ss_pred             CCCCCCChhhhHhhhhcc--ccccc-------------------------------ccCCccceEEEEEEECCeEEEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDG--QFVDS-------------------------------YDPTIENTFVKTTRMNNQDYDLKL   47 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~--~~~~~-------------------------------~~~t~~~~~~~~~~~~~~~~~~~i   47 (157)
                      +|..++|||||+++|+..  .+...                               ...|+... ..  .++.....+.+
T Consensus        12 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~-~~--~~~~~~~~~~i   88 (435)
T 1jny_A           12 IGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLT-FM--RFETKKYFFTI   88 (435)
T ss_dssp             EESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC------------C--EEECSSCEEEE
T ss_pred             EeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEee-EE--EEecCCeEEEE
Confidence            599999999999999864  22111                               00122111 11  23334467899


Q ss_pred             EeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhc---cccCCCCCCCCCCCCCCcEEEEEeCCC
Q psy1873          48 VDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTG---KIQNSSVKSPTSCVSSVPIVLVGNKKD  124 (157)
Q Consensus        48 ~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~p~~vv~nK~D  124 (157)
                      ||+||+++|......++..+|++|+|+|+++ .+|+.+..|..+..++..   ...            -.|++|++||+|
T Consensus        89 iDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~------------~~~iivviNK~D  155 (435)
T 1jny_A           89 IDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMG------------LDQLIVAVNKMD  155 (435)
T ss_dssp             CCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTT------------CTTCEEEEECGG
T ss_pred             EECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcC------------CCeEEEEEEccc
Confidence            9999999999888889999999999999998 788865544333333221   111            046999999999


Q ss_pred             CCCCc------eecHHHHHHHHHHhC-----CcEEEeccccCCC
Q psy1873         125 LHMER------MISYDEGKRLAESWK-----AGFVEASAKQDDY  157 (157)
Q Consensus       125 l~~~~------~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~  157 (157)
                      +.+..      ....++...++..++     ++++++||++|+|
T Consensus       156 l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~  199 (435)
T 1jny_A          156 LTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDN  199 (435)
T ss_dssp             GSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBT
T ss_pred             CCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcc
Confidence            86521      222455677777776     6799999999986

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.81  E-value=1.6e-19  Score=133.00  Aligned_cols=140  Identities=21%  Similarity=0.164  Sum_probs=89.3

Q ss_pred             CCCCCCChhhhHhhhhcccccc-cccCCccceEEEEEEECCeEEEEEEEeCCCCcc---------CcCchhhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVD-SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDE---------YSIFPAQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~~~~~~   70 (157)
                      +|++|||||||+|++++..+.. .+..++.+.....+.+++.  .+.+|||+|...         |...+. .+..+|++
T Consensus       185 vG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~i  261 (364)
T 2qtf_A          185 VGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDAL  261 (364)
T ss_dssp             ECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEE
T ss_pred             ECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEE
Confidence            6999999999999999876632 2222323344566777774  578999999632         222222 46889999


Q ss_pred             EEEEECCChh--hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHHh---C
Q psy1873          71 VLVYSITSHK--SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM-ISYDEGKRLAESW---K  144 (157)
Q Consensus        71 ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~-~~~~~~~~~~~~~---~  144 (157)
                      ++|+|++++.  ..+.+..|...+ .......             .|+++|+||+|+.+... .....+..++..+   +
T Consensus       262 l~VvD~s~~~~~~~~~~~~~~~~L-~~l~~~~-------------~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~  327 (364)
T 2qtf_A          262 ILVIDSTFSENLLIETLQSSFEIL-REIGVSG-------------KPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPI  327 (364)
T ss_dssp             EEEEETTSCHHHHHHHHHHHHHHH-HHHTCCS-------------CCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCE
T ss_pred             EEEEECCCCcchHHHHHHHHHHHH-HHhCcCC-------------CCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCC
Confidence            9999999877  555555544433 3332222             89999999999865331 1112344445555   3


Q ss_pred             CcEEEeccccCCC
Q psy1873         145 AGFVEASAKQDDY  157 (157)
Q Consensus       145 ~~~~e~Sa~~~~~  157 (157)
                      .+++++||++|+|
T Consensus       328 ~~~~~~SA~~g~g  340 (364)
T 2qtf_A          328 FDVIPISALKRTN  340 (364)
T ss_dssp             EEEEECBTTTTBS
T ss_pred             CcEEEEECCCCcC
Confidence            4789999999986

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.81  E-value=1.3e-20  Score=136.45  Aligned_cols=118  Identities=14%  Similarity=0.115  Sum_probs=92.3

Q ss_pred             ccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECC----------ChhhHHHHHHHHHHHH
Q psy1873          24 YDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSIT----------SHKSFEVVQILYDKLL   93 (157)
Q Consensus        24 ~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~i~   93 (157)
                      ..+|+|.. ...+.+++  +.+++||++||++++.+|..++++++++|+|||++          +.+++++...|+..+.
T Consensus       151 r~~TiGi~-~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~  227 (327)
T 3ohm_A          151 RVPTTGII-EYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII  227 (327)
T ss_dssp             CCCCCSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred             cCceeeEE-EEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh
Confidence            45666622 33344444  78999999999999999999999999999999665          6778888888988887


Q ss_pred             HHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc----------------eecHHHHHHHH----------HHhCCcE
Q psy1873          94 DMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER----------------MISYDEGKRLA----------ESWKAGF  147 (157)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~----------------~~~~~~~~~~~----------~~~~~~~  147 (157)
                      .......             +|++|+|||+|+..++                .++.+++..+.          ...++.+
T Consensus       228 ~~~~~~~-------------~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~  294 (327)
T 3ohm_A          228 TYPWFQN-------------SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYS  294 (327)
T ss_dssp             TSGGGTT-------------CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEE
T ss_pred             hhhccCC-------------ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEE
Confidence            6544333             9999999999986433                46778888884          3456789


Q ss_pred             EEeccccCCC
Q psy1873         148 VEASAKQDDY  157 (157)
Q Consensus       148 ~e~Sa~~~~~  157 (157)
                      ++|||++++|
T Consensus       295 ~~TsA~d~~n  304 (327)
T 3ohm_A          295 HFTCATDTEN  304 (327)
T ss_dssp             EECCTTCHHH
T ss_pred             EEEEeecCHH
Confidence            9999998764

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.80  E-value=3e-19  Score=133.46  Aligned_cols=137  Identities=21%  Similarity=0.244  Sum_probs=85.0

Q ss_pred             CCCCCCChhhhHhhhhcc---cccccccC--CccceE-EEEEEE-------------C--C----eEEEEEEEeCCCCcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG---QFVDSYDP--TIENTF-VKTTRM-------------N--N----QDYDLKLVDTAGQDE   55 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~---~~~~~~~~--t~~~~~-~~~~~~-------------~--~----~~~~~~i~D~~g~~~   55 (157)
                      +|..++|||||+++|++.   .+..+..+  |+...| ...+..             +  +    ....+.+||+||+++
T Consensus        14 iG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~   93 (408)
T 1s0u_A           14 VGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHET   93 (408)
T ss_dssp             ESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHH
T ss_pred             EcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHHH
Confidence            699999999999999843   22333333  444333 222211             1  1    136789999999999


Q ss_pred             CcCchhhhccCCCEEEEEEECCC----hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce-
Q psy1873          56 YSIFPAQYSMDIHGYVLVYSITS----HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM-  130 (157)
Q Consensus        56 ~~~~~~~~~~~~~~~ilv~d~~~----~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~-  130 (157)
                      |.......+..+|++|+|+|+++    +++++.+..+     .... .              .|++|++||+|+.+... 
T Consensus        94 f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-----~~l~-~--------------~~iivv~NK~Dl~~~~~~  153 (408)
T 1s0u_A           94 LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-----EILG-I--------------DKIIIVQNKIDLVDEKQA  153 (408)
T ss_dssp             HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-----HHTT-C--------------CCEEEEEECTTSSCTTTT
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-----HHcC-C--------------CeEEEEEEccCCCCHHHH
Confidence            88777777788899999999995    4445444322     1111 1              57999999999975432 


Q ss_pred             -ecHHHHHHHHHH---hCCcEEEeccccCCC
Q psy1873         131 -ISYDEGKRLAES---WKAGFVEASAKQDDY  157 (157)
Q Consensus       131 -~~~~~~~~~~~~---~~~~~~e~Sa~~~~~  157 (157)
                       ...++...++..   .+++++++||++|+|
T Consensus       154 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~g  184 (408)
T 1s0u_A          154 EENYEQIKEFVKGTIAENAPIIPISAHHEAN  184 (408)
T ss_dssp             TTHHHHHHHHHTTSTTTTCCEEEC------C
T ss_pred             HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCC
Confidence             234556666654   357999999999986

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.80  E-value=1.2e-19  Score=134.53  Aligned_cols=79  Identities=16%  Similarity=0.225  Sum_probs=68.1

Q ss_pred             EEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC----------hhhHHHHHHHHHHHHHHhccccCCC
Q psy1873          34 KTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS----------HKSFEVVQILYDKLLDMTGKIQNSS  103 (157)
Q Consensus        34 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~  103 (157)
                      ..+.+++  +.+++||++||++++.+|..++++++++|+|||+++          .++|+++..|+..+........   
T Consensus       210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~---  284 (402)
T 1azs_C          210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT---  284 (402)
T ss_dssp             EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSS---
T ss_pred             EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCC---
Confidence            3445554  789999999999999999999999999999999999          8999999999999876543222   


Q ss_pred             CCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873         104 VKSPTSCVSSVPIVLVGNKKDLHM  127 (157)
Q Consensus       104 ~~~~~~~~~~~p~~vv~nK~Dl~~  127 (157)
                                +|++|+|||+|+..
T Consensus       285 ----------~piiLvgNK~DL~~  298 (402)
T 1azs_C          285 ----------ISVILFLNKQDLLA  298 (402)
T ss_dssp             ----------CCEEEEEECHHHHH
T ss_pred             ----------CeEEEEEEChhhhh
Confidence                      99999999999854

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.80  E-value=9.7e-20  Score=133.84  Aligned_cols=109  Identities=15%  Similarity=0.114  Sum_probs=81.1

Q ss_pred             EEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC----------hhhHHHHHHHHHHHHHHhccccCCC
Q psy1873          34 KTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS----------HKSFEVVQILYDKLLDMTGKIQNSS  103 (157)
Q Consensus        34 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~  103 (157)
                      ..+.+++  +.+++||++||++++.+|..++++++++|+|||+++          .+++++...|+..+........   
T Consensus       194 ~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~---  268 (362)
T 1zcb_A          194 YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSN---  268 (362)
T ss_dssp             EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTT---
T ss_pred             EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCC---
Confidence            3445554  788999999999999999999999999999999999          7899999999999887543223   


Q ss_pred             CCCCCCCCCCCcEEEEEeCCCCCCCc----------------eecHHHHHHHHH-----------HhCCcEEEeccccCC
Q psy1873         104 VKSPTSCVSSVPIVLVGNKKDLHMER----------------MISYDEGKRLAE-----------SWKAGFVEASAKQDD  156 (157)
Q Consensus       104 ~~~~~~~~~~~p~~vv~nK~Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~e~Sa~~~~  156 (157)
                                +|++|++||+|+..++                .++.+++..++.           ..++.+++|||++++
T Consensus       269 ----------~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~  338 (362)
T 1zcb_A          269 ----------VSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTE  338 (362)
T ss_dssp             ----------SEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHH
T ss_pred             ----------CCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCch
Confidence                      9999999999985322                266778877762           346789999999986


Q ss_pred             C
Q psy1873         157 Y  157 (157)
Q Consensus       157 ~  157 (157)
                      |
T Consensus       339 n  339 (362)
T 1zcb_A          339 N  339 (362)
T ss_dssp             H
T ss_pred             h
Confidence            5

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.80  E-value=2.6e-19  Score=126.26  Aligned_cols=139  Identities=15%  Similarity=0.143  Sum_probs=86.0

Q ss_pred             CCCCCCChhhhHhhhhccc-ccccccCC-c-cceEEEEEEECCeEEEEEEEeCCCCccCcCch-----------hhhccC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ-FVDSYDPT-I-ENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP-----------AQYSMD   66 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~-~~~~~~~t-~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----------~~~~~~   66 (157)
                      +|.+|||||||+++|++.. +...+.++ + ..........++  ..+.+|||||+..+....           ..+++.
T Consensus        28 vG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~  105 (260)
T 2xtp_A           28 VGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPG  105 (260)
T ss_dssp             EECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTC
T ss_pred             ECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            6999999999999999876 44444443 2 233344555665  457999999987664332           226789


Q ss_pred             CCEEEEEEECCChhhH-HHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEE-eCCCCCCCceecH-------HHHH
Q psy1873          67 IHGYVLVYSITSHKSF-EVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG-NKKDLHMERMISY-------DEGK  137 (157)
Q Consensus        67 ~~~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~-nK~Dl~~~~~~~~-------~~~~  137 (157)
                      +|++|+|+|+++.... ..+..++..+......               .|.+++. ||+|+... .+..       .++.
T Consensus       106 ~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~---------------~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~  169 (260)
T 2xtp_A          106 PHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAM---------------GHTIVLFTHKEDLNGG-SLMDYMHDSDNKALS  169 (260)
T ss_dssp             CSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGG---------------GGEEEEEECGGGGTTC-CHHHHHHHCCCHHHH
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhh---------------ccEEEEEEcccccCCc-cHHHHHHhcchHHHH
Confidence            9999999999862222 2233343333221111               4555555 59998643 2222       3345


Q ss_pred             HHHHHhCCc---E--EEeccccCCC
Q psy1873         138 RLAESWKAG---F--VEASAKQDDY  157 (157)
Q Consensus       138 ~~~~~~~~~---~--~e~Sa~~~~~  157 (157)
                      .++...+..   +  +++||++|.|
T Consensus       170 ~~~~~~~~~~~~~~~~~~SA~~~~g  194 (260)
T 2xtp_A          170 KLVAACGGRICAFNNRAEGSNQDDQ  194 (260)
T ss_dssp             HHHHHTTTCEEECCTTCCHHHHHHH
T ss_pred             HHHHHhCCeEEEecCcccccccHHH
Confidence            566666642   3  7899988754

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.80  E-value=1.9e-19  Score=139.62  Aligned_cols=137  Identities=20%  Similarity=0.178  Sum_probs=93.4

Q ss_pred             CCCCCCChhhhHhhhhccc--cc-----ccccC------CccceE---EEEEEE---CCeEEEEEEEeCCCCccCcCchh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ--FV-----DSYDP------TIENTF---VKTTRM---NNQDYDLKLVDTAGQDEYSIFPA   61 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~--~~-----~~~~~------t~~~~~---~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~   61 (157)
                      +|..++|||||+++|+...  +.     ..+..      +.+.+.   ...+.+   ++..+.+.+|||||+.+|.....
T Consensus        10 iGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~   89 (599)
T 3cb4_D           10 IAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVS   89 (599)
T ss_dssp             ECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGGHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHHH
Confidence            6999999999999998632  11     00100      112111   112222   45678999999999999999999


Q ss_pred             hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873          62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE  141 (157)
Q Consensus        62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~  141 (157)
                      ..++.+|++|+|+|.++..+.+....|..... .    .             +|+++++||+|+...+  .......+..
T Consensus        90 ~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-~----~-------------ipiIvViNKiDl~~a~--~~~v~~ei~~  149 (599)
T 3cb4_D           90 RSLAACEGALLVVDAGQGVEAQTLANCYTAME-M----D-------------LEVVPVLNKIDLPAAD--PERVAEEIED  149 (599)
T ss_dssp             HHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-T----T-------------CEEEEEEECTTSTTCC--HHHHHHHHHH
T ss_pred             HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-C----C-------------CCEEEeeeccCccccc--HHHHHHHHHH
Confidence            99999999999999999877777766654432 1    2             8999999999996543  2344566777


Q ss_pred             HhCC---cEEEeccccCCC
Q psy1873         142 SWKA---GFVEASAKQDDY  157 (157)
Q Consensus       142 ~~~~---~~~e~Sa~~~~~  157 (157)
                      .+++   +++++||++|+|
T Consensus       150 ~lg~~~~~vi~vSAktg~G  168 (599)
T 3cb4_D          150 IVGIDATDAVRCSAKTGVG  168 (599)
T ss_dssp             HTCCCCTTCEEECTTTCTT
T ss_pred             HhCCCcceEEEeecccCCC
Confidence            7776   499999999986

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.80  E-value=3.3e-19  Score=134.28  Aligned_cols=138  Identities=14%  Similarity=0.028  Sum_probs=88.4

Q ss_pred             CCCCCCChhhhHhhhhcccc--c-----------------------------ccccCCccceE-EEEEEECCeEEEEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--V-----------------------------DSYDPTIENTF-VKTTRMNNQDYDLKLV   48 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~-----------------------------~~~~~t~~~~~-~~~~~~~~~~~~~~i~   48 (157)
                      +|.+++|||||+++|+...-  .                             .+....+.... ...+..+  ...+.+|
T Consensus        23 iG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~--~~~~~ii  100 (439)
T 3j2k_7           23 IGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE--KKHFTIL  100 (439)
T ss_pred             EeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC--CeEEEEE
Confidence            69999999999999964311  0                             00111111111 2223333  3578999


Q ss_pred             eCCCCccCcCchhhhccCCCEEEEEEECCChhh---HH---HHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEe
Q psy1873          49 DTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKS---FE---VVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGN  121 (157)
Q Consensus        49 D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~n  121 (157)
                      |+||+++|.......+..+|++|+|+|.++...   |+   +..+.+..+. ..   .             +| ++|++|
T Consensus       101 DTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~-~~---~-------------v~~iIvviN  163 (439)
T 3j2k_7          101 DAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK-TA---G-------------VKHLIVLIN  163 (439)
T ss_pred             ECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH-Hc---C-------------CCeEEEEee
Confidence            999999999888888999999999999988532   22   2222222221 11   1             66 999999


Q ss_pred             CCCCCCC------ceecHHHHHHHHHHhC------CcEEEeccccCCC
Q psy1873         122 KKDLHME------RMISYDEGKRLAESWK------AGFVEASAKQDDY  157 (157)
Q Consensus       122 K~Dl~~~------~~~~~~~~~~~~~~~~------~~~~e~Sa~~~~~  157 (157)
                      |+|+...      .....++...++..++      ++++++||++|+|
T Consensus       164 K~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~n  211 (439)
T 3j2k_7          164 KMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGAN  211 (439)
T ss_pred             cCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcc
Confidence            9998532      1122234455555555      4799999999987

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.80  E-value=1.7e-19  Score=140.55  Aligned_cols=141  Identities=12%  Similarity=0.057  Sum_probs=88.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccc-------------------------------cC--CccceEEEEEEECCeEEEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSY-------------------------------DP--TIENTFVKTTRMNNQDYDLKL   47 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~-------------------------------~~--t~~~~~~~~~~~~~~~~~~~i   47 (157)
                      +|.+++|||||+++|+........                               .+  |+.. ....+..  ....+.|
T Consensus       173 vG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~-~~~~~~~--~~~~~~i  249 (611)
T 3izq_1          173 LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSI-CTSHFST--HRANFTI  249 (611)
T ss_dssp             ECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSC-SCCEEEC--SSCEEEE
T ss_pred             EECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEee-eeEEEec--CCceEEE
Confidence            699999999999999865321100                               01  1111 1222223  3457899


Q ss_pred             EeCCCCccCcCchhhhccCCCEEEEEEECCChh---hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCC
Q psy1873          48 VDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK---SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD  124 (157)
Q Consensus        48 ~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~D  124 (157)
                      |||||+++|.......++.+|++|+|+|+++..   ++....++...+........             .|++||+||+|
T Consensus       250 iDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi-------------~~iIVVvNKiD  316 (611)
T 3izq_1          250 VDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGI-------------HNLIIAMNKMD  316 (611)
T ss_dssp             EECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTC-------------CEEEEEEECTT
T ss_pred             EECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCC-------------CeEEEEEeccc
Confidence            999999999988888999999999999998742   11111111111111111111             45999999999


Q ss_pred             CCCCceec----HHHHHHHHHHhC-----CcEEEeccccCCC
Q psy1873         125 LHMERMIS----YDEGKRLAESWK-----AGFVEASAKQDDY  157 (157)
Q Consensus       125 l~~~~~~~----~~~~~~~~~~~~-----~~~~e~Sa~~~~~  157 (157)
                      +.+.++..    ..+...+....+     ++++++||++|+|
T Consensus       317 l~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~g  358 (611)
T 3izq_1          317 NVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEG  358 (611)
T ss_dssp             TTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTT
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCC
Confidence            97633322    233444444444     5899999999987

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.80  E-value=3.9e-19  Score=123.96  Aligned_cols=137  Identities=18%  Similarity=0.193  Sum_probs=87.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccC--Ccc-ceEEEEEEECCeEEEEEEEeCCCCc-----------cCcCchhhhccC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDP--TIE-NTFVKTTRMNNQDYDLKLVDTAGQD-----------EYSIFPAQYSMD   66 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~--t~~-~~~~~~~~~~~~~~~~~i~D~~g~~-----------~~~~~~~~~~~~   66 (157)
                      ||++|||||||+++|++..+.....+  ++. ......+.+++.  .+.+|||||..           .+.......+++
T Consensus        35 vG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~  112 (239)
T 3lxx_A           35 VGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPG  112 (239)
T ss_dssp             ECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHHHHHHHHTTTC
T ss_pred             ECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCC
Confidence            69999999999999999877544433  222 333455566664  57899999943           333445556678


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHHhcc-ccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec------HHHHHHH
Q psy1873          67 IHGYVLVYSITSHKSFEVVQILYDKLLDMTGK-IQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS------YDEGKRL  139 (157)
Q Consensus        67 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~------~~~~~~~  139 (157)
                      ++++|+|+|+++...-  ...|+..+...... ..             .|++||+||+|+...+.+.      .+..+.+
T Consensus       113 ~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~-------------~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l  177 (239)
T 3lxx_A          113 PHALLLVVPLGRYTEE--EHKATEKILKMFGERAR-------------SFMILIFTRKDDLGDTNLHDYLREAPEDIQDL  177 (239)
T ss_dssp             CSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHG-------------GGEEEEEECGGGC------------CHHHHHH
T ss_pred             CcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhcc-------------ceEEEEEeCCccCCcccHHHHHHhchHHHHHH
Confidence            8999999998764442  12333333332211 11             6899999999986554433      2457788


Q ss_pred             HHHhCCcEEEecccc
Q psy1873         140 AESWKAGFVEASAKQ  154 (157)
Q Consensus       140 ~~~~~~~~~e~Sa~~  154 (157)
                      ++..+..|+.+++..
T Consensus       178 ~~~~~~~~~~~~~~~  192 (239)
T 3lxx_A          178 MDIFGDRYCALNNKA  192 (239)
T ss_dssp             HHHHSSSEEECCTTC
T ss_pred             HHHcCCEEEEEECCC
Confidence            888888888777664

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.79  E-value=4.4e-19  Score=137.45  Aligned_cols=137  Identities=20%  Similarity=0.181  Sum_probs=95.0

Q ss_pred             CCCCCCChhhhHhhhhccc--ccc-----cccCC------ccceE---EEEEEE---CCeEEEEEEEeCCCCccCcCchh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ--FVD-----SYDPT------IENTF---VKTTRM---NNQDYDLKLVDTAGQDEYSIFPA   61 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~--~~~-----~~~~t------~~~~~---~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~   61 (157)
                      +|..++|||||+++|+...  +..     ....+      .+.+.   ...+.+   ++..+.+.+|||||+.+|.....
T Consensus        12 iGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~~ev~   91 (600)
T 2ywe_A           12 IAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVS   91 (600)
T ss_dssp             ECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHHHHHH
Confidence            6999999999999998632  110     00000      11111   112222   45678899999999999998888


Q ss_pred             hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873          62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE  141 (157)
Q Consensus        62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~  141 (157)
                      ..+..+|++|+|+|.++..+.+....|..... .    .             +|+++++||+|+...+  .......+..
T Consensus        92 r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-~----~-------------ipiIvviNKiDl~~a~--~~~v~~el~~  151 (600)
T 2ywe_A           92 RALAACEGALLLIDASQGIEAQTVANFWKAVE-Q----D-------------LVIIPVINKIDLPSAD--VDRVKKQIEE  151 (600)
T ss_dssp             HHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-T----T-------------CEEEEEEECTTSTTCC--HHHHHHHHHH
T ss_pred             HHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-C----C-------------CCEEEEEeccCccccC--HHHHHHHHHH
Confidence            89999999999999999888877766654431 1    2             8999999999996543  2344556666


Q ss_pred             HhCC---cEEEeccccCCC
Q psy1873         142 SWKA---GFVEASAKQDDY  157 (157)
Q Consensus       142 ~~~~---~~~e~Sa~~~~~  157 (157)
                      .+++   +++++||++|+|
T Consensus       152 ~lg~~~~~vi~vSAktg~G  170 (600)
T 2ywe_A          152 VLGLDPEEAILASAKEGIG  170 (600)
T ss_dssp             TSCCCGGGCEECBTTTTBS
T ss_pred             hhCCCcccEEEEEeecCCC
Confidence            6776   499999999986

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.79  E-value=2.3e-19  Score=136.53  Aligned_cols=133  Identities=22%  Similarity=0.201  Sum_probs=90.8

Q ss_pred             CCCCCCChhhhHhhhhccc-------ccccccC--CccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ-------FVDSYDP--TIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYV   71 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~-------~~~~~~~--t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   71 (157)
                      +|..++|||||+++|++..       ......+  |+... ...+..++  ..+.+||+||+++|.......+..+|++|
T Consensus        25 iG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~-~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~~aD~~i  101 (482)
T 1wb1_A           25 FGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIG-FSAFKLEN--YRITLVDAPGHADLIRAVVSAADIIDLAL  101 (482)
T ss_dssp             EECTTSSHHHHHHHHHTTC--------------------C-CCEEEETT--EEEEECCCSSHHHHHHHHHHHTTSCCEEE
T ss_pred             ECCCCChHHHHHHHHHCCCcccccccccccccCccEEecc-eEEEEECC--EEEEEEECCChHHHHHHHHHHHhhCCEEE
Confidence            5999999999999998765       2222222  22211 22234454  56899999999999888888899999999


Q ss_pred             EEEECCC---hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHHh---
Q psy1873          72 LVYSITS---HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM--ISYDEGKRLAESW---  143 (157)
Q Consensus        72 lv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~--~~~~~~~~~~~~~---  143 (157)
                      +|+|.++   +++.+.+.     ++...   .             +|+++++||+|+.+...  ...++...++...   
T Consensus       102 lVvda~~g~~~qt~e~l~-----~~~~~---~-------------ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~  160 (482)
T 1wb1_A          102 IVVDAKEGPKTQTGEHML-----ILDHF---N-------------IPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL  160 (482)
T ss_dssp             EEEETTTCSCHHHHHHHH-----HHHHT---T-------------CCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG
T ss_pred             EEEecCCCccHHHHHHHH-----HHHHc---C-------------CCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc
Confidence            9999988   45554443     12221   1             88899999999965321  2234455566555   


Q ss_pred             -CCcEEEeccccCCC
Q psy1873         144 -KAGFVEASAKQDDY  157 (157)
Q Consensus       144 -~~~~~e~Sa~~~~~  157 (157)
                       +++++++||++|+|
T Consensus       161 ~~~~ii~vSA~~g~g  175 (482)
T 1wb1_A          161 KNSSIIPISAKTGFG  175 (482)
T ss_dssp             GGCCEEECCTTTCTT
T ss_pred             ccceEEEEECcCCCC
Confidence             57999999999986

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.79  E-value=7.2e-20  Score=136.72  Aligned_cols=139  Identities=18%  Similarity=0.147  Sum_probs=94.3

Q ss_pred             CCCCCCChhhhHhhhhcc--------ccccc--c-----cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVDG--------QFVDS--Y-----DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYS   64 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~--------~~~~~--~-----~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   64 (157)
                      +|.+++|||||+++|++.        .+...  .     ..+.+... .....++.....+.+||+||+++|.......+
T Consensus        17 iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~   96 (405)
T 2c78_A           17 IGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGA   96 (405)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHH
Confidence            599999999999999873        11110  0     00111111 22333444446789999999999988888889


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCce---ecHHHHHHHH
Q psy1873          65 MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERM---ISYDEGKRLA  140 (157)
Q Consensus        65 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~---~~~~~~~~~~  140 (157)
                      ..+|++|+|+|.++... .+...|+..+...    .             +| +++++||+|+.....   ....+...++
T Consensus        97 ~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~----~-------------ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l  158 (405)
T 2c78_A           97 AQMDGAILVVSAADGPM-PQTREHILLARQV----G-------------VPYIVVFMNKVDMVDDPELLDLVEMEVRDLL  158 (405)
T ss_dssp             TTCSSEEEEEETTTCCC-HHHHHHHHHHHHT----T-------------CCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred             HHCCEEEEEEECCCCCc-HHHHHHHHHHHHc----C-------------CCEEEEEEECccccCcHHHHHHHHHHHHHHH
Confidence            99999999999988654 3445555444332    1             77 899999999864222   1223566677


Q ss_pred             HHhC-----CcEEEeccccCCC
Q psy1873         141 ESWK-----AGFVEASAKQDDY  157 (157)
Q Consensus       141 ~~~~-----~~~~e~Sa~~~~~  157 (157)
                      ..++     ++++++||++|+|
T Consensus       159 ~~~~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          159 NQYEFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             HHTTSCTTTSCEEECCHHHHHH
T ss_pred             HHhcccccCCCEEEccHHHhhh
Confidence            7766     6899999998853

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.79  E-value=1.7e-21  Score=149.10  Aligned_cols=138  Identities=21%  Similarity=0.169  Sum_probs=93.9

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|.+++|||||+++|.+..+...+.+++...+ ...+..+ ....+.+|||||++.|..++..+++.+|++|+|+|.++.
T Consensus        10 vG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg   88 (537)
T 3izy_P           10 MGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDG   88 (537)
T ss_dssp             EESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSC
T ss_pred             ECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCC
Confidence            69999999999999998877655555544322 2222332 123578999999999999999999999999999999986


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec-HHHHHHH---HHHh--CCcEEEeccc
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS-YDEGKRL---AESW--KAGFVEASAK  153 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~e~Sa~  153 (157)
                      ...+.... +..+..    ..             +|++|++||+|+.+.+... ..+...+   +..+  .++++++||+
T Consensus        89 ~~~qt~e~-l~~~~~----~~-------------vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk  150 (537)
T 3izy_P           89 VMKQTVES-IQHAKD----AH-------------VPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL  150 (537)
T ss_dssp             CCHHHHHH-HHHHHT----TT-------------CCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred             ccHHHHHH-HHHHHH----cC-------------CcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence            55544332 222221    12             8999999999986432211 1111111   1122  2589999999


Q ss_pred             cCCC
Q psy1873         154 QDDY  157 (157)
Q Consensus       154 ~~~~  157 (157)
                      +|+|
T Consensus       151 tG~G  154 (537)
T 3izy_P          151 TGEN  154 (537)
T ss_dssp             SSCS
T ss_pred             CCCC
Confidence            9986

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.79  E-value=3.7e-19  Score=134.69  Aligned_cols=137  Identities=14%  Similarity=0.084  Sum_probs=91.6

Q ss_pred             CCCCCCChhhhHhhhhcc--cccc-------------------------------cccCCccceEEEEEEECCeEEEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDG--QFVD-------------------------------SYDPTIENTFVKTTRMNNQDYDLKL   47 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~~~~~i   47 (157)
                      +|.+++|||||+++|+..  .+..                               ..-.|+...+ ..  ++.....+.+
T Consensus        13 iG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~-~~--~~~~~~~~~i   89 (458)
T 1f60_A           13 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL-WK--FETPKYQVTV   89 (458)
T ss_dssp             EECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC-EE--EECSSEEEEE
T ss_pred             EcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE-EE--EecCCceEEE
Confidence            599999999999999864  1110                               0112222111 22  2333467899


Q ss_pred             EeCCCCccCcCchhhhccCCCEEEEEEECCChh---hHH---HHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEE
Q psy1873          48 VDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK---SFE---VVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVG  120 (157)
Q Consensus        48 ~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~  120 (157)
                      ||+||+++|.......+..+|++|+|+|.++..   +|+   +..+++..+ ...   .             +| ++|++
T Consensus        90 iDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~~---~-------------v~~iivvi  152 (458)
T 1f60_A           90 IDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FTL---G-------------VRQLIVAV  152 (458)
T ss_dssp             EECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HHT---T-------------CCEEEEEE
T ss_pred             EECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HHc---C-------------CCeEEEEE
Confidence            999999999988888899999999999998763   332   233333222 211   1             55 99999


Q ss_pred             eCCCCCCCce----ecHHHHHHHHHHhC-----CcEEEeccccCCC
Q psy1873         121 NKKDLHMERM----ISYDEGKRLAESWK-----AGFVEASAKQDDY  157 (157)
Q Consensus       121 nK~Dl~~~~~----~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~  157 (157)
                      ||+|+.+..+    ...++...++..++     ++++++||++|+|
T Consensus       153 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~n  198 (458)
T 1f60_A          153 NKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDN  198 (458)
T ss_dssp             ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBT
T ss_pred             EccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcC
Confidence            9999863211    22345666666666     6899999999986

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.78  E-value=6.6e-19  Score=131.72  Aligned_cols=137  Identities=20%  Similarity=0.223  Sum_probs=90.7

Q ss_pred             CCCCCCChhhhHhhhhcc---cccccccC--CccceEE-EEEEE-------------C--C----eEEEEEEEeCCCCcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG---QFVDSYDP--TIENTFV-KTTRM-------------N--N----QDYDLKLVDTAGQDE   55 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~---~~~~~~~~--t~~~~~~-~~~~~-------------~--~----~~~~~~i~D~~g~~~   55 (157)
                      +|..++|||||+++|++.   .+..+..+  |+...|. ..+..             +  +    ....+.+||+||+++
T Consensus        16 iG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~   95 (410)
T 1kk1_A           16 VGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEA   95 (410)
T ss_dssp             ECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHH
T ss_pred             ECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChHH
Confidence            699999999999999843   22333333  4443332 21111             1  1    136789999999999


Q ss_pred             CcCchhhhccCCCEEEEEEECCCh----hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce-
Q psy1873          56 YSIFPAQYSMDIHGYVLVYSITSH----KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM-  130 (157)
Q Consensus        56 ~~~~~~~~~~~~~~~ilv~d~~~~----~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~-  130 (157)
                      |.......+..+|++|+|+|.++.    ++.+.+..+     ....  .             .|+++++||+|+.+... 
T Consensus        96 f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-----~~~~--~-------------~~iivviNK~Dl~~~~~~  155 (410)
T 1kk1_A           96 LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-----QIIG--Q-------------KNIIIAQNKIELVDKEKA  155 (410)
T ss_dssp             HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-----HHHT--C-------------CCEEEEEECGGGSCHHHH
T ss_pred             HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH-----HHcC--C-------------CcEEEEEECccCCCHHHH
Confidence            887777777888999999999953    444444322     1111  1             57999999999866432 


Q ss_pred             -ecHHHHHHHHHH---hCCcEEEeccccCCC
Q psy1873         131 -ISYDEGKRLAES---WKAGFVEASAKQDDY  157 (157)
Q Consensus       131 -~~~~~~~~~~~~---~~~~~~e~Sa~~~~~  157 (157)
                       ...++...++..   .+++++++||++|+|
T Consensus       156 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~g  186 (410)
T 1kk1_A          156 LENYRQIKEFIEGTVAENAPIIPISALHGAN  186 (410)
T ss_dssp             HHHHHHHHHHHTTSTTTTCCEEECBTTTTBS
T ss_pred             HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCC
Confidence             223445555543   357999999999986

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.78  E-value=1.2e-19  Score=137.73  Aligned_cols=101  Identities=18%  Similarity=0.088  Sum_probs=60.8

Q ss_pred             EEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh---hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEE
Q psy1873          43 YDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH---KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVL  118 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~v  118 (157)
                      ..+.+||+||+++|.......+..+|++|+|+|.++.   .+|+...++...+..... ..             +| ++|
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~-------------vp~iiv  186 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QG-------------INHLVV  186 (467)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TT-------------CSSEEE
T ss_pred             eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cC-------------CCEEEE
Confidence            5689999999999998888889999999999999986   344322222222221111 11             76 999


Q ss_pred             EEeCCCCCCCc------eecHHHHHHHHHHh-------CCcEEEeccccCCC
Q psy1873         119 VGNKKDLHMER------MISYDEGKRLAESW-------KAGFVEASAKQDDY  157 (157)
Q Consensus       119 v~nK~Dl~~~~------~~~~~~~~~~~~~~-------~~~~~e~Sa~~~~~  157 (157)
                      ++||+|+....      .....+...++...       +++++++||++|+|
T Consensus       187 viNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~  238 (467)
T 1r5b_A          187 VINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQN  238 (467)
T ss_dssp             EEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBT
T ss_pred             EEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccc
Confidence            99999985421      12234566666666       35799999999986

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.78  E-value=1.4e-19  Score=128.69  Aligned_cols=139  Identities=16%  Similarity=0.142  Sum_probs=77.9

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccc-------cCCccceE-EEEEEECCeEEEEEEEeCCCCccC-------cCch----
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSY-------DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-------SIFP----   60 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~-------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~----   60 (157)
                      +|.+|+|||||+|+++.... ...+       .+|++... ...+..++..+.+.+|||+|....       ..+.    
T Consensus        14 vG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~   93 (274)
T 3t5d_A           14 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYID   93 (274)
T ss_dssp             EECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHH
Confidence            69999999999999776544 3333       45665433 444455666678999999997332       2222    


Q ss_pred             ---hhhcc-------------CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCC
Q psy1873          61 ---AQYSM-------------DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD  124 (157)
Q Consensus        61 ---~~~~~-------------~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~D  124 (157)
                         ..++.             .+|+++++++.+.......-..++..+..     .             +|+++|+||+|
T Consensus        94 ~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-----~-------------~pvi~V~nK~D  155 (274)
T 3t5d_A           94 SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-----K-------------VNIIPLIAKAD  155 (274)
T ss_dssp             HHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-----T-------------SCEEEEESSGG
T ss_pred             HHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-----c-------------CCEEEEEeccC
Confidence               22222             26788888876542221222233333322     2             99999999999


Q ss_pred             CCCCceec--HHHHHHHHHHhCCcEEEeccccCCC
Q psy1873         125 LHMERMIS--YDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus       125 l~~~~~~~--~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +.......  ...........+++++++||++++|
T Consensus       156 ~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~  190 (274)
T 3t5d_A          156 TLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEE  190 (274)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHTTCCCCCC-------
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChh
Confidence            86533322  2334556667789999999998875

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.78  E-value=1.2e-19  Score=131.97  Aligned_cols=87  Identities=15%  Similarity=0.132  Sum_probs=71.3

Q ss_pred             ccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECC----------ChhhHHHHHHHHHHHH
Q psy1873          24 YDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSIT----------SHKSFEVVQILYDKLL   93 (157)
Q Consensus        24 ~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~i~   93 (157)
                      +.+|+|.. ...+.+  ..+.+++||++||++++.+|..++++++++|+|||++          +.+++++...|+..+.
T Consensus       145 ~~~TiGi~-~~~~~~--~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~  221 (340)
T 4fid_A          145 RTKTTGIH-EYDFVV--KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIM  221 (340)
T ss_dssp             CCCCCSCE-EEEEES--SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHH
T ss_pred             ccceeeeE-EEEEEe--eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHh
Confidence            45666632 223333  3478999999999999999999999999999999999          7889999999999988


Q ss_pred             HHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873          94 DMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH  126 (157)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~  126 (157)
                      .......             +|++|+|||+|+.
T Consensus       222 ~~~~~~~-------------~piiLv~NK~DL~  241 (340)
T 4fid_A          222 TNEFLKG-------------AVKLIFLNKMDLF  241 (340)
T ss_dssp             HCGGGTT-------------SEEEEEEECHHHH
T ss_pred             hhhccCC-------------CeEEEEEECchhh
Confidence            7654333             9999999999985

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.77  E-value=3.1e-19  Score=132.98  Aligned_cols=139  Identities=16%  Similarity=0.086  Sum_probs=91.6

Q ss_pred             CCCCCCChhhhHhhhhccc-------cccc--cc-----CCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ-------FVDS--YD-----PTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM   65 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~-------~~~~--~~-----~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   65 (157)
                      +|..++|||||+++|++..       +...  ..     ...+... .....++.....+.+||+||+++|.......+.
T Consensus         9 iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~   88 (397)
T 1d2e_A            9 IGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTA   88 (397)
T ss_dssp             ESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSS
T ss_pred             EeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHh
Confidence            5999999999999998641       1100  00     0111111 112233344467899999999999888888899


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCce---ecHHHHHHHHH
Q psy1873          66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERM---ISYDEGKRLAE  141 (157)
Q Consensus        66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~---~~~~~~~~~~~  141 (157)
                      .+|++|+|+|.++....+.. +++..+. ..   .             +| +++++||+|+.....   ...++...++.
T Consensus        89 ~aD~~ilVvda~~g~~~qt~-e~l~~~~-~~---~-------------vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~  150 (397)
T 1d2e_A           89 PLDGCILVVAANDGPMPQTR-EHLLLAR-QI---G-------------VEHVVVYVNKADAVQDSEMVELVELEIRELLT  150 (397)
T ss_dssp             CCSEEEEEEETTTCSCHHHH-HHHHHHH-HT---T-------------CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             hCCEEEEEEECCCCCCHHHH-HHHHHHH-Hc---C-------------CCeEEEEEECcccCCCHHHHHHHHHHHHHHHH
Confidence            99999999999985443332 3333222 21   1             77 789999999864221   12345667777


Q ss_pred             HhC-----CcEEEeccccCCC
Q psy1873         142 SWK-----AGFVEASAKQDDY  157 (157)
Q Consensus       142 ~~~-----~~~~e~Sa~~~~~  157 (157)
                      .++     ++++++||++|+|
T Consensus       151 ~~~~~~~~~~~i~~SA~~g~n  171 (397)
T 1d2e_A          151 EFGYKGEETPIIVGSALCALE  171 (397)
T ss_dssp             HTTSCTTTSCEEECCHHHHHT
T ss_pred             HcCCCcccCcEEEeehhhccc
Confidence            776     5899999998753

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.77  E-value=3.2e-18  Score=120.96  Aligned_cols=115  Identities=17%  Similarity=0.179  Sum_probs=80.3

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhcc---------CCCE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM---------DIHG   69 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---------~~~~   69 (157)
                      +|.+|+|||||+++|++..+  ...+.++........+..++  ..+.+|||||+.++......+++         .+++
T Consensus        42 vG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~  119 (262)
T 3def_A           42 LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDV  119 (262)
T ss_dssp             EECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECE
T ss_pred             ECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCE
Confidence            69999999999999998775  33444443344455556666  46899999999988776555543         7899


Q ss_pred             EEEEEECCChhhHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce
Q psy1873          70 YVLVYSITSHKSFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM  130 (157)
Q Consensus        70 ~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~  130 (157)
                      +++|++++... +... ..|+..+........            ..|+++|+||+|+.+.+.
T Consensus       120 il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~------------~~~~ivv~nK~Dl~~~~~  168 (262)
T 3def_A          120 LLYVDRLDVYA-VDELDKQVVIAITQTFGKEI------------WCKTLLVLTHAQFSPPDE  168 (262)
T ss_dssp             EEEEEESSCSC-CCHHHHHHHHHHHHHHCGGG------------GGGEEEEEECTTCCCSTT
T ss_pred             EEEEEcCCCCC-CCHHHHHHHHHHHHHhchhh------------hcCEEEEEeCcccCCCCC
Confidence            99999998755 4433 456666665543220            148999999999964433

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.77  E-value=1.3e-18  Score=134.95  Aligned_cols=106  Identities=20%  Similarity=0.248  Sum_probs=75.3

Q ss_pred             CCCCCCChhhhHhhhhccccccc----ccCCccceEEEEEE-------------ECCeEEEEEEEeCCCCccCcCchhhh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDS----YDPTIENTFVKTTR-------------MNNQDYDLKLVDTAGQDEYSIFPAQY   63 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~----~~~t~~~~~~~~~~-------------~~~~~~~~~i~D~~g~~~~~~~~~~~   63 (157)
                      +|++++|||||+++|++..+...    ..++++..+.....             ++.....+.+|||||+++|..++...
T Consensus        11 vGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~   90 (594)
T 1g7s_A           11 LGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRG   90 (594)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSS
T ss_pred             ECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHHHHHHH
Confidence            69999999999999997655432    22344432211000             00111248999999999999999999


Q ss_pred             ccCCCEEEEEEECCC---hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873          64 SMDIHGYVLVYSITS---HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM  127 (157)
Q Consensus        64 ~~~~~~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~  127 (157)
                      ++.+|++|+|+|+++   +++++.+..    +. .   ..             +|+++++||+|+..
T Consensus        91 ~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~-~---~~-------------vPiIVViNKiDl~~  136 (594)
T 1g7s_A           91 GALADLAILIVDINEGFKPQTQEALNI----LR-M---YR-------------TPFVVAANKIDRIH  136 (594)
T ss_dssp             SBSCSEEEEEEETTTCCCHHHHHHHHH----HH-H---TT-------------CCEEEEEECGGGST
T ss_pred             HhhCCEEEEEEECCCCccHhHHHHHHH----HH-H---cC-------------CeEEEEeccccccc
Confidence            999999999999999   777765542    11 1   12             99999999999854

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.76  E-value=5.5e-20  Score=139.81  Aligned_cols=134  Identities=24%  Similarity=0.270  Sum_probs=89.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|+.++|||||+++|.+..+.....+++.... ...+..++  ..+.+|||||++.|..++...+..+|++|+|+|.++.
T Consensus        10 vGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g   87 (501)
T 1zo1_I           10 MGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDG   87 (501)
T ss_dssp             EESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTB
T ss_pred             ECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccC
Confidence            69999999999999998766544333222111 22223344  3578999999999999999999999999999999883


Q ss_pred             ---hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc--eecHH--HHHHHHHHhC--CcEEEe
Q psy1873          80 ---KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER--MISYD--EGKRLAESWK--AGFVEA  150 (157)
Q Consensus        80 ---~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~--~~~~~--~~~~~~~~~~--~~~~e~  150 (157)
                         ++.+.+.    .+..    ..             +|+++++||+|+....  .+...  +...++..++  ++++++
T Consensus        88 ~~~qT~e~l~----~~~~----~~-------------vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~v  146 (501)
T 1zo1_I           88 VMPQTIEAIQ----HAKA----AQ-------------VPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHV  146 (501)
T ss_dssp             SCTTTHHHHH----HHHH----TT-------------CCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEEC
T ss_pred             ccHHHHHHHH----HHHh----cC-------------ceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEE
Confidence               4443332    1111    12             8999999999986421  11100  0011122233  689999


Q ss_pred             ccccCCC
Q psy1873         151 SAKQDDY  157 (157)
Q Consensus       151 Sa~~~~~  157 (157)
                      ||++|+|
T Consensus       147 SAktG~g  153 (501)
T 1zo1_I          147 SAKAGTG  153 (501)
T ss_dssp             CTTTCTT
T ss_pred             eeeeccC
Confidence            9999986

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.76  E-value=6.3e-19  Score=130.07  Aligned_cols=128  Identities=9%  Similarity=-0.048  Sum_probs=88.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|.+++|||||+++|+.      ...|+...+ ..  +......+.+||+||+++|.......++.+|++|+|+| + ..
T Consensus        27 iG~~d~GKSTL~~~L~~------~giTi~~~~-~~--~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g   95 (370)
T 2elf_A           27 IGTEKSGRTSLAANLGK------KGTSSDITM-YN--NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QG   95 (370)
T ss_dssp             EESTTSSHHHHHHTTSE------EEEESSSEE-EE--ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TC
T ss_pred             ECCCCCCHHHHHHHHHh------CCEEEEeeE-EE--EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CC
Confidence            59999999999999982      223333222 22  22233568999999999998777778899999999999 4 44


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcE-EEEEe-CCCCCCCceecH--HHHHHHHHHhC---CcEEE--ec
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPI-VLVGN-KKDLHMERMISY--DEGKRLAESWK---AGFVE--AS  151 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~-~vv~n-K~Dl~~~~~~~~--~~~~~~~~~~~---~~~~e--~S  151 (157)
                      ...+..+++..+....                 +|. ++++| |+|+ +...+..  ++...++...+   +++++  +|
T Consensus        96 ~~~qt~e~~~~~~~~~-----------------i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~S  157 (370)
T 2elf_A           96 LDAHTGECIIALDLLG-----------------FKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTN  157 (370)
T ss_dssp             CCHHHHHHHHHHHHTT-----------------CCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred             CcHHHHHHHHHHHHcC-----------------CCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence            4555666655443322                 676 88888 9999 5333222  44555555443   69999  99


Q ss_pred             ccc---CCC
Q psy1873         152 AKQ---DDY  157 (157)
Q Consensus       152 a~~---~~~  157 (157)
                      |++   |+|
T Consensus       158 A~~~~~g~g  166 (370)
T 2elf_A          158 KSAKNPFEG  166 (370)
T ss_dssp             TTSSSTTTT
T ss_pred             cccCcCCCC
Confidence            999   876

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.76  E-value=1.3e-19  Score=137.23  Aligned_cols=133  Identities=19%  Similarity=0.091  Sum_probs=83.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCC--------CccCcCchhhhccCCCEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAG--------QDEYSIFPAQYSMDIHGYV   71 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~~~~~~~~~i   71 (157)
                      ||.+|||||||+|+|++..+... ..+.+... .....+......+.+|||+|        ++.+......+++.+|++|
T Consensus        29 vG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il  107 (456)
T 4dcu_A           29 VGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVII  107 (456)
T ss_dssp             ECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEE
T ss_pred             ECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEE
Confidence            69999999999999998776311 12222111 22223333445789999999        5666677888899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEe
Q psy1873          72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVEA  150 (157)
Q Consensus        72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~  150 (157)
                      +|+|..+.  +.....|+..++...   .             .|+++|+||+|+.....    ....+ ..+++ ..+++
T Consensus       108 ~VvD~~~~--~~~~d~~l~~~l~~~---~-------------~pvilV~NK~D~~~~~~----~~~e~-~~lg~~~~~~i  164 (456)
T 4dcu_A          108 FMVNGREG--VTAADEEVAKILYRT---K-------------KPVVLAVNKLDNTEMRA----NIYDF-YSLGFGEPYPI  164 (456)
T ss_dssp             EEEESSSC--SCHHHHHHHHHHTTC---C-------------SCEEEEEECC-------------CCS-GGGSSSSEEEC
T ss_pred             EEEeCCCC--CChHHHHHHHHHHHc---C-------------CCEEEEEECccchhhhh----hHHHH-HHcCCCceEEe
Confidence            99998763  333445555555432   2             99999999999854321    11111 23454 57899


Q ss_pred             ccccCCC
Q psy1873         151 SAKQDDY  157 (157)
Q Consensus       151 Sa~~~~~  157 (157)
                      ||++|.|
T Consensus       165 SA~~g~g  171 (456)
T 4dcu_A          165 SGTHGLG  171 (456)
T ss_dssp             CTTTCTT
T ss_pred             ecccccc
Confidence            9999976

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.75  E-value=2e-18  Score=132.42  Aligned_cols=106  Identities=17%  Similarity=0.192  Sum_probs=74.6

Q ss_pred             CCCCCCChhhhHhhhhcc------------------ccccc------ccCCccceEEEEEEECCeEEEEEEEeCCCCccC
Q psy1873           1 MGYRSVGKSSLSIQFVDG------------------QFVDS------YDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY   56 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~------------------~~~~~------~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   56 (157)
                      +|.+|+|||||+++|+..                  .+.+.      .-.|+. .....+..+  .+.+.+|||||+.+|
T Consensus        19 iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~-~~~~~~~~~--~~~i~liDTPG~~df   95 (528)
T 3tr5_A           19 ISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVT-TSVMQFPYK--DYLINLLDTPGHADF   95 (528)
T ss_dssp             EECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSS-SSEEEEEET--TEEEEEECCCCSTTC
T ss_pred             ECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEE-EeEEEEEeC--CEEEEEEECCCchhH
Confidence            699999999999999621                  01100      001111 112333344  467899999999999


Q ss_pred             cCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873          57 SIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM  127 (157)
Q Consensus        57 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~  127 (157)
                      ......+++.+|++|+|+|.++..+.+....| ..+...    .             +|+++++||+|+..
T Consensus        96 ~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~~----~-------------iPiivviNK~Dl~~  148 (528)
T 3tr5_A           96 TEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRLR----H-------------TPIMTFINKMDRDT  148 (528)
T ss_dssp             CHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHTT----T-------------CCEEEEEECTTSCC
T ss_pred             HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHHc----C-------------CCEEEEEeCCCCcc
Confidence            99999999999999999999987776665443 333222    2             99999999999854

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.73  E-value=7e-19  Score=126.20  Aligned_cols=98  Identities=19%  Similarity=0.070  Sum_probs=61.8

Q ss_pred             EEEEEEeCCCCcc-------------CcCchhhhccCCCEEE-EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCC
Q psy1873          43 YDLKLVDTAGQDE-------------YSIFPAQYSMDIHGYV-LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPT  108 (157)
Q Consensus        43 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i-lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~  108 (157)
                      ..+.+|||||...             +..+...+++.++.+| +|+|.++..+......++..+    ....        
T Consensus       125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~----~~~~--------  192 (299)
T 2aka_B          125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV----DPQG--------  192 (299)
T ss_dssp             CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHH----CTTC--------
T ss_pred             CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHh----CCCC--------
Confidence            5789999999642             3345667888888776 689998755444333333332    2222        


Q ss_pred             CCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH--hC-CcEEEeccccCCC
Q psy1873         109 SCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES--WK-AGFVEASAKQDDY  157 (157)
Q Consensus       109 ~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~e~Sa~~~~~  157 (157)
                           .|+++|+||+|+.+......+........  .+ .+++++||++|+|
T Consensus       193 -----~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~g  239 (299)
T 2aka_B          193 -----QRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDG  239 (299)
T ss_dssp             -----SSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTS
T ss_pred             -----CeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccc
Confidence                 89999999999875444222222210011  13 3788999999986

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.73  E-value=6.3e-18  Score=115.29  Aligned_cols=134  Identities=13%  Similarity=0.077  Sum_probs=81.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccC----------cCchhhhc---cC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY----------SIFPAQYS---MD   66 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~----------~~~~~~~~---~~   66 (157)
                      +|++|||||||++++++..+.....++.+... ...+.+++   .+.+||++|....          ......++   ..
T Consensus        32 vG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (210)
T 1pui_A           32 AGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQS  108 (210)
T ss_dssp             EECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHHHHHCTT
T ss_pred             ECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhc
Confidence            69999999999999998775444455555333 33333433   4678999997431          22222333   46


Q ss_pred             CCEEEEEEECCChhhHHH--HHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc--eecHHHHHHHHHH
Q psy1873          67 IHGYVLVYSITSHKSFEV--VQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER--MISYDEGKRLAES  142 (157)
Q Consensus        67 ~~~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~--~~~~~~~~~~~~~  142 (157)
                      ++++++++|++++.+...  +..|+    ..   ..             .|+++++||+|+....  +.....+..++..
T Consensus       109 ~~~~~~v~d~~~~~~~~~~~~~~~~----~~---~~-------------~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~  168 (210)
T 1pui_A          109 LQGLVVLMDIRHPLKDLDQQMIEWA----VD---SN-------------IAVLVLLTKADKLASGARKAQLNMVREAVLA  168 (210)
T ss_dssp             EEEEEEEEETTSCCCHHHHHHHHHH----HH---TT-------------CCEEEEEECGGGSCHHHHHHHHHHHHHHHGG
T ss_pred             ccEEEEEEECCCCCchhHHHHHHHH----HH---cC-------------CCeEEEEecccCCCchhHHHHHHHHHHHHHh
Confidence            789999999998655432  22222    11   12             8999999999986532  2223456666666


Q ss_pred             hC--CcEEEeccccCCC
Q psy1873         143 WK--AGFVEASAKQDDY  157 (157)
Q Consensus       143 ~~--~~~~e~Sa~~~~~  157 (157)
                      .+  +.++++||++++|
T Consensus       169 ~~~~~~~~~~Sal~~~~  185 (210)
T 1pui_A          169 FNGDVQVETFSSLKKQG  185 (210)
T ss_dssp             GCSCEEEEECBTTTTBS
T ss_pred             cCCCCceEEEeecCCCC
Confidence            65  5789999999875

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.73  E-value=4.4e-18  Score=138.54  Aligned_cols=138  Identities=17%  Similarity=0.132  Sum_probs=91.7

Q ss_pred             CCCCCCChhhhHhhhhcccc-------cc-------cccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-------VD-------SYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM   65 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-------~~-------~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   65 (157)
                      +|.+++|||||+++|++...       ..       ....+.+.++ ...+.++.....+.+|||||+++|.......+.
T Consensus       302 IGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas  381 (1289)
T 3avx_A          302 IGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAA  381 (1289)
T ss_dssp             EESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSC
T ss_pred             EcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHh
Confidence            59999999999999986411       00       0011222111 112234444567899999999999888888899


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCce---ecHHHHHHHHH
Q psy1873          66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERM---ISYDEGKRLAE  141 (157)
Q Consensus        66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~---~~~~~~~~~~~  141 (157)
                      .+|++|+|+|.++.... +..+++..+...    .             +| ++|++||+|+.+...   ...++...++.
T Consensus       382 ~AD~aILVVDAtdGv~~-QTrEhL~ll~~l----g-------------IP~IIVVINKiDLv~d~e~le~i~eEi~elLk  443 (1289)
T 3avx_A          382 QMDGAILVVAATDGPMP-QTREHILLGRQV----G-------------VPYIIVFLNKCDMVDDEELLELVEMEVRELLS  443 (1289)
T ss_dssp             CCSEEEEEEETTTCSCT-THHHHHHHHHHH----T-------------CSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH
T ss_pred             hCCEEEEEEcCCccCcH-HHHHHHHHHHHc----C-------------CCeEEEEEeecccccchhhHHHHHHHHHHHHH
Confidence            99999999999986433 333444433322    1             77 899999999965322   12345667777


Q ss_pred             HhC-----CcEEEeccccCC
Q psy1873         142 SWK-----AGFVEASAKQDD  156 (157)
Q Consensus       142 ~~~-----~~~~e~Sa~~~~  156 (157)
                      .++     ++++++||++|.
T Consensus       444 ~~G~~~~~vp~IpvSAktG~  463 (1289)
T 3avx_A          444 QYDFPGDDTPIVRGSALKAL  463 (1289)
T ss_dssp             HTTSCTTTCCEEECCSTTTT
T ss_pred             hccccccceeEEEEEeccCC
Confidence            776     689999999983

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.72  E-value=7.1e-17  Score=120.49  Aligned_cols=141  Identities=16%  Similarity=0.137  Sum_probs=95.2

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCcc----CcCchhhh---ccCCCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDE----YSIFPAQY---SMDIHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~~~~il   72 (157)
                      ||++|||||||++++.+... ...+..+........+.+++ ...+.+||++|...    +..+...+   ...++.++.
T Consensus       163 VG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~  241 (416)
T 1udx_A          163 VGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLY  241 (416)
T ss_dssp             ECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEE
T ss_pred             ECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhE
Confidence            69999999999999987643 22233222222223344443 24578999999743    23333333   356899999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecc
Q psy1873          73 VYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA  152 (157)
Q Consensus        73 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  152 (157)
                      ++|++ ...++++..|..++......            +...|.++++||+|+...  ....+....+...+++++++||
T Consensus       242 vvDls-~~~~~~ls~g~~el~~la~a------------L~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA  306 (416)
T 1udx_A          242 VLDAA-DEPLKTLETLRKEVGAYDPA------------LLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSA  306 (416)
T ss_dssp             EEETT-SCHHHHHHHHHHHHHHHCHH------------HHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCT
T ss_pred             EeCCc-cCCHHHHHHHHHHHHHHhHH------------hhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEEC
Confidence            99998 66788887777777665321            011889999999998653  2334455566667889999999


Q ss_pred             ccCCC
Q psy1873         153 KQDDY  157 (157)
Q Consensus       153 ~~~~~  157 (157)
                      ++++|
T Consensus       307 ~~g~g  311 (416)
T 1udx_A          307 LTGAG  311 (416)
T ss_dssp             TTCTT
T ss_pred             CCccC
Confidence            99986

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.72  E-value=1.2e-17  Score=124.76  Aligned_cols=139  Identities=17%  Similarity=0.152  Sum_probs=80.1

Q ss_pred             CCCCCCChhhhHhhhhccccccc-c-------cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcC-------------
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDS-Y-------DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSI-------------   58 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~-~-------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~-------------   58 (157)
                      ||++|||||||+++|++..+... +       .++++... ...+...+....+.+||++|...+..             
T Consensus        37 vG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~  116 (418)
T 2qag_C           37 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYID  116 (418)
T ss_dssp             ECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHH
Confidence            69999999999999998766311 1       12222111 11112234445789999999765421             


Q ss_pred             ------------chhhhccCCCEEEEEEECCCh-hhHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCC
Q psy1873          59 ------------FPAQYSMDIHGYVLVYSITSH-KSFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD  124 (157)
Q Consensus        59 ------------~~~~~~~~~~~~ilv~d~~~~-~s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~D  124 (157)
                                  +...++.++++.+++|+.... .++..+. .|+..+.    . .             +|+++|+||+|
T Consensus       117 ~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~-~-------------v~iIlVinK~D  178 (418)
T 2qag_C          117 SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----E-K-------------VNIIPLIAKAD  178 (418)
T ss_dssp             HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----T-T-------------SEEEEEEESTT
T ss_pred             HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----c-c-------------CcEEEEEEccc
Confidence                        123345667766677766654 4565554 4554442    1 2             89999999999


Q ss_pred             CCCCceecH--HHHHHHHHHhCCcEEEeccccCCC
Q psy1873         125 LHMERMISY--DEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus       125 l~~~~~~~~--~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +...+.+..  .++..++..++++++++||++++|
T Consensus       179 ll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~  213 (418)
T 2qag_C          179 TLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEE  213 (418)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHTCCCCCCC------
T ss_pred             CccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcC
Confidence            976666654  678888889999999999998764

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.71  E-value=4.8e-18  Score=125.05  Aligned_cols=98  Identities=13%  Similarity=0.014  Sum_probs=68.5

Q ss_pred             EEEEEEeCCCCccC-------------cCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCC
Q psy1873          43 YDLKLVDTAGQDEY-------------SIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTS  109 (157)
Q Consensus        43 ~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~  109 (157)
                      ..+.+||+||..++             ..+...++.+++++|+++|.++.+...  ..|+. +........         
T Consensus       136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~-l~~~~~~~~---------  203 (360)
T 3t34_A          136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIK-ISREVDPSG---------  203 (360)
T ss_dssp             CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHH-HHHHSCTTC---------
T ss_pred             CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHH-HHHHhcccC---------
Confidence            35789999998876             456677899999999999876543322  12222 223332222         


Q ss_pred             CCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCC
Q psy1873         110 CVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD  156 (157)
Q Consensus       110 ~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  156 (157)
                          .|+++|+||+|+.+......+....+...++++|+++|+++++
T Consensus       204 ----~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~  246 (360)
T 3t34_A          204 ----DRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQA  246 (360)
T ss_dssp             ----TTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHH
T ss_pred             ----CCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChH
Confidence                8999999999997655555555555566677899999998764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.71  E-value=1.6e-18  Score=124.81  Aligned_cols=138  Identities=17%  Similarity=0.159  Sum_probs=72.5

Q ss_pred             CCCCCCChhhhHhhhhcc-cccccc--------cCCccceE-EEEEEECCeEEEEEEEeCCCC-------ccCcCchh--
Q psy1873           1 MGYRSVGKSSLSIQFVDG-QFVDSY--------DPTIENTF-VKTTRMNNQDYDLKLVDTAGQ-------DEYSIFPA--   61 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~-~~~~~~--------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~-------~~~~~~~~--   61 (157)
                      ||++|||||||++++.+. .+....        .++..... ...+..++....+.+||++|+       +.+..+..  
T Consensus        24 vG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l  103 (301)
T 2qnr_A           24 VGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYI  103 (301)
T ss_dssp             EEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTTHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHH
Confidence            699999999999998764 443322        12222111 222233455678899999998       56665554  


Q ss_pred             -----hhccCCC-----------EEEEEEECCC-hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCC
Q psy1873          62 -----QYSMDIH-----------GYVLVYSITS-HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD  124 (157)
Q Consensus        62 -----~~~~~~~-----------~~ilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~D  124 (157)
                           .++...+           +.+++|.... ..+++.+..   .++..... .             .|+++|+||+|
T Consensus       104 ~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~---~~l~~l~~-~-------------~~iilV~~K~D  166 (301)
T 2qnr_A          104 DEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV---AFMKAIHN-K-------------VNIVPVIAKAD  166 (301)
T ss_dssp             HHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH---HHHHHHTT-T-------------SCEEEEECCGG
T ss_pred             HHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH---HHHHHHHh-c-------------CCEEEEEEeCC
Confidence                 4433222           1123333321 223444431   22333222 2             78999999999


Q ss_pred             CCCCcee--cHHHHHHHHHHhCCcEEEeccccC
Q psy1873         125 LHMERMI--SYDEGKRLAESWKAGFVEASAKQD  155 (157)
Q Consensus       125 l~~~~~~--~~~~~~~~~~~~~~~~~e~Sa~~~  155 (157)
                      +...+++  ..++++.+++.++++++++||++|
T Consensus       167 l~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~  199 (301)
T 2qnr_A          167 TLTLKERERLKKRILDEIEEHNIKIYHLPDAES  199 (301)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHTTCCCCCCC----
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc
Confidence            8764443  346788899999999999999987

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.70  E-value=5.9e-17  Score=114.89  Aligned_cols=114  Identities=17%  Similarity=0.211  Sum_probs=75.3

Q ss_pred             CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhh---------hccCCCE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQ---------YSMDIHG   69 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~---------~~~~~~~   69 (157)
                      +|.+|+|||||+|+|++..+.  ..+.++........+..+  ...+.+|||||+.++..+...         ....+|+
T Consensus        45 vG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~  122 (270)
T 1h65_A           45 MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDV  122 (270)
T ss_dssp             EESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECE
T ss_pred             ECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCE
Confidence            699999999999999987752  223333322223333334  466899999999877644331         1346899


Q ss_pred             EEEEEECCChhhHHHH-HHHHHHHHHHhcc-ccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce
Q psy1873          70 YVLVYSITSHKSFEVV-QILYDKLLDMTGK-IQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM  130 (157)
Q Consensus        70 ~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~  130 (157)
                      +|+|+|++.. ++... ..|+..+...... ..             .|+++|+||+|+.+.+.
T Consensus       123 il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~-------------~~iivV~nK~Dl~~~~~  171 (270)
T 1h65_A          123 LLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIW-------------NKAIVALTHAQFSPPDG  171 (270)
T ss_dssp             EEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGG-------------GGEEEEEECCSCCCGGG
T ss_pred             EEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccc-------------cCEEEEEECcccCCcCC
Confidence            9999999764 34433 4666666554322 11             68999999999965543

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.70  E-value=5.4e-17  Score=127.68  Aligned_cols=108  Identities=12%  Similarity=0.066  Sum_probs=74.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCC----------------ccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPT----------------IENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQY   63 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t----------------~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   63 (157)
                      +|+.|+|||||+++|+..........+                .+..+ .....+....+.+.+||++|+.+|......+
T Consensus        15 iG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~   94 (665)
T 2dy1_A           15 VGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGA   94 (665)
T ss_dssp             EESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHH
T ss_pred             ECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHHH
Confidence            689999999999999853322111111                01112 2223333345788999999999999888899


Q ss_pred             ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873          64 SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH  126 (157)
Q Consensus        64 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~  126 (157)
                      ++.+|++++++|.++....+. ..++..+...    .             +|+++++||+|+.
T Consensus        95 l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~----~-------------ip~ilv~NKiD~~  139 (665)
T 2dy1_A           95 LEAADAALVAVSAEAGVQVGT-ERAWTVAERL----G-------------LPRMVVVTKLDKG  139 (665)
T ss_dssp             HHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT----T-------------CCEEEEEECGGGC
T ss_pred             HhhcCcEEEEEcCCcccchhH-HHHHHHHHHc----c-------------CCEEEEecCCchh
Confidence            999999999999887654333 3444444332    2             8999999999985

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.70  E-value=6.3e-17  Score=120.32  Aligned_cols=79  Identities=22%  Similarity=0.093  Sum_probs=42.9

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCC-ccceEEE-EE-------------------EECC-eEEEEEEEeCCCCcc--
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPT-IENTFVK-TT-------------------RMNN-QDYDLKLVDTAGQDE--   55 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t-~~~~~~~-~~-------------------~~~~-~~~~~~i~D~~g~~~--   55 (157)
                      ||.+|||||||+|++++.... ..+..| +...... .+                   .+++ ..+.+.+||++|..+  
T Consensus         6 vG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~~a   85 (397)
T 1wxq_A            6 VGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPGA   85 (397)
T ss_dssp             EECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC------
T ss_pred             ECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCcccch
Confidence            699999999999999987642 233222 2222111 11                   1233 246799999999854  


Q ss_pred             --CcCchh---hhccCCCEEEEEEECCCh
Q psy1873          56 --YSIFPA---QYSMDIHGYVLVYSITSH   79 (157)
Q Consensus        56 --~~~~~~---~~~~~~~~~ilv~d~~~~   79 (157)
                        ...+..   ..++.+|++++|+|.++.
T Consensus        86 ~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           86 HEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             ---------CCCSSTTCSEEEEEEETTCC
T ss_pred             hhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence              233333   346899999999999875

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.70  E-value=1.6e-18  Score=134.64  Aligned_cols=99  Identities=19%  Similarity=0.067  Sum_probs=56.1

Q ss_pred             EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh---hH---HHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK---SF---EVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP  115 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p  115 (157)
                      ...+.||||||+.+|.......+..+|++|+|+|.++..   ++   ......+ .+.....                +|
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l-~~~~~lg----------------ip  316 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA-YLLRALG----------------IS  316 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH-HHHHHSS----------------CC
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH-HHHHHcC----------------CC
Confidence            467899999999999988888899999999999998642   11   1111111 1222221                55


Q ss_pred             -EEEEEeCCCCCCCcee----cHHHHHHHH-HHhCC-----cEEEeccccCCC
Q psy1873         116 -IVLVGNKKDLHMERMI----SYDEGKRLA-ESWKA-----GFVEASAKQDDY  157 (157)
Q Consensus       116 -~~vv~nK~Dl~~~~~~----~~~~~~~~~-~~~~~-----~~~e~Sa~~~~~  157 (157)
                       ++||+||+|+.+....    ...+...+. ...++     +++++||++|+|
T Consensus       317 ~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~g  369 (592)
T 3mca_A          317 EIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTN  369 (592)
T ss_dssp             CEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSS
T ss_pred             eEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcc
Confidence             9999999998652211    122333444 33454     799999999986

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.68  E-value=1.2e-16  Score=122.78  Aligned_cols=137  Identities=15%  Similarity=0.149  Sum_probs=86.2

Q ss_pred             CCCCCCChhhhHhhhhccc--c------ccc------------ccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ--F------VDS------------YDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF   59 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~--~------~~~------------~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~   59 (157)
                      +|.+++|||||+++|+...  +      ...            ...+.+... .....+....+.+.+|||||+.+|...
T Consensus        19 iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~~   98 (529)
T 2h5e_A           19 ISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSED   98 (529)
T ss_dssp             EECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCSTTCCHH
T ss_pred             ECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCChhHHHH
Confidence            6999999999999998531  1      000            000111111 111122223467899999999999988


Q ss_pred             hhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHH
Q psy1873          60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRL  139 (157)
Q Consensus        60 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~  139 (157)
                      ...++..+|++|+|+|.++....+     ...+........             +|+++++||+|+.....  .+....+
T Consensus        99 ~~~~l~~aD~~IlVvDa~~g~~~~-----t~~~~~~~~~~~-------------ipiivviNK~Dl~~~~~--~~~~~~i  158 (529)
T 2h5e_A           99 TYRTLTAVDCCLMVIDAAKGVEDR-----TRKLMEVTRLRD-------------TPILTFMNKLDRDIRDP--MELLDEV  158 (529)
T ss_dssp             HHHGGGGCSEEEEEEETTTCSCHH-----HHHHHHHHTTTT-------------CCEEEEEECTTSCCSCH--HHHHHHH
T ss_pred             HHHHHHHCCEEEEEEeCCccchHH-----HHHHHHHHHHcC-------------CCEEEEEcCcCCccccH--HHHHHHH
Confidence            888999999999999998864322     222333332222             99999999999865432  3445566


Q ss_pred             HHHhCCc-----EEEeccccCCC
Q psy1873         140 AESWKAG-----FVEASAKQDDY  157 (157)
Q Consensus       140 ~~~~~~~-----~~e~Sa~~~~~  157 (157)
                      ...++..     +..+|+++++|
T Consensus       159 ~~~l~~~~~~~~~pi~sa~~~~G  181 (529)
T 2h5e_A          159 ENELKIGCAPITWPIGCGKLFKG  181 (529)
T ss_dssp             HHHHCCEEEESEEEESCGGGCCE
T ss_pred             HHHhCCCccceecceecccCcce
Confidence            6666753     44567777654

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.65  E-value=1.2e-15  Score=111.83  Aligned_cols=153  Identities=17%  Similarity=0.131  Sum_probs=91.3

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccC-CccceEEEEEEECCe---------------EEEEEEEeCCCCccCc----Cc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDP-TIENTFVKTTRMNNQ---------------DYDLKLVDTAGQDEYS----IF   59 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~-t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~----~~   59 (157)
                      ||.+|||||||+|++++..+. ..+.. |+.... ..+.+++.               ...+.+||++|..++.    .+
T Consensus         8 VG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~-g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl   86 (363)
T 1jal_A            8 VGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT-GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGL   86 (363)
T ss_dssp             ECCTTSSHHHHHHHHHHTC------CCCCCCCCS-SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGG
T ss_pred             ECCCCCCHHHHHHHHHCCCCcccCCCCceECceE-EEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccchH
Confidence            699999999999999987643 22322 333222 22344442               1568999999998763    33


Q ss_pred             hh---hhccCCCEEEEEEECCCh----------hhHHHHHHHHHHHH---------------HHhcc-------------
Q psy1873          60 PA---QYSMDIHGYVLVYSITSH----------KSFEVVQILYDKLL---------------DMTGK-------------   98 (157)
Q Consensus        60 ~~---~~~~~~~~~ilv~d~~~~----------~s~~~~~~~~~~i~---------------~~~~~-------------   98 (157)
                      ..   .+++.+|++++|+|.++.          +.++.+..+..++.               .....             
T Consensus        87 ~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~~~l~  166 (363)
T 1jal_A           87 GNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFELSVME  166 (363)
T ss_dssp             TCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHHHHHH
Confidence            33   347899999999999862          23443332222221               10000             


Q ss_pred             -------ccCC-----CCCC------CCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecccc
Q psy1873          99 -------IQNS-----SVKS------PTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ  154 (157)
Q Consensus        99 -------~~~~-----~~~~------~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  154 (157)
                             ...+     +...      .-..+...|+++++|+.|..-...........++...+++++.+||+.
T Consensus       167 ~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          167 KILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             HHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             HHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence                   0000     0000      012355699999999999642223345667788888899999999875

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.65  E-value=2.2e-17  Score=119.28  Aligned_cols=96  Identities=14%  Similarity=0.062  Sum_probs=56.6

Q ss_pred             EEEEEEeCCCCcc-------------CcCchhhhccCCCEEEEEEECCChhhH-HHHHHHHHHHHHHhccccCCCCCCCC
Q psy1873          43 YDLKLVDTAGQDE-------------YSIFPAQYSMDIHGYVLVYSITSHKSF-EVVQILYDKLLDMTGKIQNSSVKSPT  108 (157)
Q Consensus        43 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~~~~~~~~~  108 (157)
                      ..+.+|||||..+             +......++..+|++++|+|.++.... .....+    ........        
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i----~~~~~~~~--------  198 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQL----AKEVDPEG--------  198 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHH----HHHHCSSC--------
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHH----HHHhCCCC--------
Confidence            4689999999754             334466688999999999997543211 111111    12222222        


Q ss_pred             CCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccC
Q psy1873         109 SCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD  155 (157)
Q Consensus       109 ~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  155 (157)
                           .|+++|+||+|+........+........++..|+++|++++
T Consensus       199 -----~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa  240 (315)
T 1jwy_B          199 -----KRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQ  240 (315)
T ss_dssp             -----SSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCH
T ss_pred             -----CcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCCh
Confidence                 899999999998754432222222111122367888887764

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.65  E-value=1.7e-16  Score=125.42  Aligned_cols=68  Identities=15%  Similarity=0.219  Sum_probs=50.4

Q ss_pred             EEEEEeCCCCcc---CcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEE
Q psy1873          44 DLKLVDTAGQDE---YSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG  120 (157)
Q Consensus        44 ~~~i~D~~g~~~---~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~  120 (157)
                      .+.+|||||...   .......+++.+|++|+|+|.+++.+......|...+.    ...             .|+++|+
T Consensus       175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~----~~~-------------~~iiiVl  237 (695)
T 2j69_A          175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK----GRG-------------LTVFFLV  237 (695)
T ss_dssp             TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT----TSC-------------CCEEEEE
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH----hhC-------------CCEEEEE
Confidence            578999999654   33456678899999999999998877776654433321    112             7899999


Q ss_pred             eCCCCCCC
Q psy1873         121 NKKDLHME  128 (157)
Q Consensus       121 nK~Dl~~~  128 (157)
                      ||+|+...
T Consensus       238 NK~Dl~~~  245 (695)
T 2j69_A          238 NAWDQVRE  245 (695)
T ss_dssp             ECGGGGGG
T ss_pred             ECcccccc
Confidence            99998644

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.60  E-value=2.1e-15  Score=119.07  Aligned_cols=106  Identities=17%  Similarity=0.184  Sum_probs=74.7

Q ss_pred             CCCCCCChhhhHhhhhccccc--------c------------cccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV--------D------------SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP   60 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~--------~------------~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   60 (157)
                      +|.+|+|||||+++|+.....        .            ....|+... ...+..+  .+.+.+|||+|+.+|...+
T Consensus        18 vG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~-~~~~~~~--~~~i~liDTPG~~df~~~~   94 (691)
T 1dar_A           18 AAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA-VTTCFWK--DHRINIIDTPGHVDFTIEV   94 (691)
T ss_dssp             EECTTSCHHHHHHHHHHHHCC----------------------------CC-EEEEEET--TEEEEEECCCSSTTCHHHH
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc-eEEEEEC--CeEEEEEECcCccchHHHH
Confidence            699999999999999842110        0            111222211 2223333  4678999999999999999


Q ss_pred             hhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873          61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM  127 (157)
Q Consensus        61 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~  127 (157)
                      ..+++.+|++|+|+|.++..+.+....|. .+...    .             +|+++++||+|+..
T Consensus        95 ~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~~----~-------------~p~ivviNKiD~~~  143 (691)
T 1dar_A           95 ERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEKY----K-------------VPRIAFANKMDKTG  143 (691)
T ss_dssp             HHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHHT----T-------------CCEEEEEECTTSTT
T ss_pred             HHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHHc----C-------------CCEEEEEECCCccc
Confidence            99999999999999999988777665543 23222    2             99999999999864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.57  E-value=3.9e-14  Score=101.94  Aligned_cols=88  Identities=14%  Similarity=0.087  Sum_probs=72.9

Q ss_pred             CccCcCchhhhccCCCEEEEEEECCChh-hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee
Q psy1873          53 QDEYSIFPAQYSMDIHGYVLVYSITSHK-SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI  131 (157)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~  131 (157)
                      ++++..+.+.++.++|++++|+|++++. +++.+.+|+..+...    .             +|+++|+||+|+.+.+.+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~----~-------------~~~ilV~NK~DL~~~~~v  128 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF----K-------------VEPVIVFNKIDLLNEEEK  128 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT----T-------------CEEEEEECCGGGCCHHHH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC----C-------------CCEEEEEEcccCCCcccc
Confidence            7888888889999999999999999987 899899998865431    2             999999999999765433


Q ss_pred             c-HHHHHHHHHHhCCcEEEeccccCCC
Q psy1873         132 S-YDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus       132 ~-~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      . .++...+++..+++++++||++|+|
T Consensus       129 ~~~~~~~~~~~~~g~~~~~~SA~~g~g  155 (302)
T 2yv5_A          129 KELERWISIYRDAGYDVLKVSAKTGEG  155 (302)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred             HHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence            3 4556677777899999999999986

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.56  E-value=5.1e-18  Score=117.11  Aligned_cols=44  Identities=23%  Similarity=0.018  Sum_probs=35.1

Q ss_pred             CcEEEEEeCCCCCCCceecHHHHHHHHHHh--CCcEEEeccccCCC
Q psy1873         114 VPIVLVGNKKDLHMERMISYDEGKRLAESW--KAGFVEASAKQDDY  157 (157)
Q Consensus       114 ~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~e~Sa~~~~~  157 (157)
                      .|.++|+||+|+.+.+.+..++...+++.+  +++++++||++|+|
T Consensus       165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  210 (226)
T 2hf9_A          165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEG  210 (226)
T ss_dssp             TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTT
T ss_pred             cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCC
Confidence            678999999998654445667777777765  57999999999986

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.55  E-value=1.9e-16  Score=116.29  Aligned_cols=98  Identities=21%  Similarity=0.094  Sum_probs=53.7

Q ss_pred             EEEEEEeCCCCcc-------------CcCchhhhccCCCEEEE-EEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCC
Q psy1873          43 YDLKLVDTAGQDE-------------YSIFPAQYSMDIHGYVL-VYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPT  108 (157)
Q Consensus        43 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~il-v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~  108 (157)
                      ..+.+|||||...             +..+...++..++.+|+ +.|.+..-.-.....    +........        
T Consensus       130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~----i~~~~~~~~--------  197 (353)
T 2x2e_A          130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK----VAKEVDPQG--------  197 (353)
T ss_dssp             CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH----HHHHHCTTC--------
T ss_pred             CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH----HHHHhCcCC--------
Confidence            5689999999643             33455667766665555 445543211111112    222222222        


Q ss_pred             CCCCCCcEEEEEeCCCCCCCceecHHHHHH--HHHHhC-CcEEEeccccCCC
Q psy1873         109 SCVSSVPIVLVGNKKDLHMERMISYDEGKR--LAESWK-AGFVEASAKQDDY  157 (157)
Q Consensus       109 ~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~--~~~~~~-~~~~e~Sa~~~~~  157 (157)
                           .|+++|+||+|+.+...........  +...++ .+++++||++|+|
T Consensus       198 -----~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~  244 (353)
T 2x2e_A          198 -----QRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDG  244 (353)
T ss_dssp             -----TTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHT
T ss_pred             -----CceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccc
Confidence                 8999999999986543311111110  111123 2678899998764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.55  E-value=3.3e-15  Score=102.60  Aligned_cols=89  Identities=20%  Similarity=0.118  Sum_probs=57.6

Q ss_pred             EEEEEEeCCCCccCcCchhhhc-cCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873          43 YDLKLVDTAGQDEYSIFPAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN  121 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~~~~~~~-~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n  121 (157)
                      +.+.+||++|+...    +.++ ...+.+++|+|+++....  ...+.    ...   .             .|+++++|
T Consensus       109 ~d~iiidt~G~~~~----~~~~~~~~~~~i~vvd~~~~~~~--~~~~~----~~~---~-------------~~~iiv~N  162 (221)
T 2wsm_A          109 CDLLLIENVGNLIC----PVDFDLGENYRVVMVSVTEGDDV--VEKHP----EIF---R-------------VADLIVIN  162 (221)
T ss_dssp             CSEEEEEEEEBSSG----GGGCCCSCSEEEEEEEGGGCTTH--HHHCH----HHH---H-------------TCSEEEEE
T ss_pred             CCEEEEeCCCCCCC----CchhccccCcEEEEEeCCCcchh--hhhhh----hhh---h-------------cCCEEEEe
Confidence            56789999986211    1111 246789999998765421  11111    111   1             88999999


Q ss_pred             CCCCCCCceecHHHHHHHHHHhC--CcEEEeccccCCC
Q psy1873         122 KKDLHMERMISYDEGKRLAESWK--AGFVEASAKQDDY  157 (157)
Q Consensus       122 K~Dl~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~  157 (157)
                      |+|+.+.+....++...+++..+  ++++++||++|+|
T Consensus       163 K~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~g  200 (221)
T 2wsm_A          163 KVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKG  200 (221)
T ss_dssp             CGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBT
T ss_pred             cccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCC
Confidence            99985433345566666666654  7899999999986

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.55  E-value=4.2e-14  Score=104.11  Aligned_cols=154  Identities=17%  Similarity=0.174  Sum_probs=88.9

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccccC-CccceEEEEEEECC-------------------eEEEEEEEeCCCCccCc--
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSYDP-TIENTFVKTTRMNN-------------------QDYDLKLVDTAGQDEYS--   57 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~~~-t~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~~~~--   57 (157)
                      ||.+|||||||++++++... ...+.. |+..... ...+++                   ....+++||++|..++.  
T Consensus         7 VG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g-~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~a~~   85 (368)
T 2dby_A            7 VGLPNVGKSTLFNALTRANALAANYPFATIDKNVG-VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGAHK   85 (368)
T ss_dssp             ECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE-EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCCCCS
T ss_pred             ECCCCCCHHHHHHHHhCCCCcccCCCCceecccee-eEecChHHHHHHHHHhcccccccccCCceEEEEECCCccccccc
Confidence            69999999999999997653 222222 3332221 112221                   23568999999987653  


Q ss_pred             --Cchh---hhccCCCEEEEEEECCCh----------hhHHHHHHH---------------HHHHHHHhcc---------
Q psy1873          58 --IFPA---QYSMDIHGYVLVYSITSH----------KSFEVVQIL---------------YDKLLDMTGK---------   98 (157)
Q Consensus        58 --~~~~---~~~~~~~~~ilv~d~~~~----------~s~~~~~~~---------------~~~i~~~~~~---------   98 (157)
                        .+..   ..++.+|++++|+|.++.          +.++.+..+               +.++......         
T Consensus        86 ~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~~~~~  165 (368)
T 2dby_A           86 GEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERLPLLE  165 (368)
T ss_dssp             SSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             cchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHHHHHH
Confidence              2332   347899999999999862          122222111               1111000000         


Q ss_pred             ----------ccCCCCC-C----------CCCCCCCCcEEEEEeCCCC--CCC-ceecHHHHHHHHHHhCCcEEEecccc
Q psy1873          99 ----------IQNSSVK-S----------PTSCVSSVPIVLVGNKKDL--HME-RMISYDEGKRLAESWKAGFVEASAKQ  154 (157)
Q Consensus        99 ----------~~~~~~~-~----------~~~~~~~~p~~vv~nK~Dl--~~~-~~~~~~~~~~~~~~~~~~~~e~Sa~~  154 (157)
                                ....... .          .-..+...|+++++||.|.  .+. +.......+.+++..+++++++||++
T Consensus       166 ~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~  245 (368)
T 2dby_A          166 AAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARL  245 (368)
T ss_dssp             HHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHH
T ss_pred             HHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechh
Confidence                      0000000 0          0112455899999999973  222 13445667888888899999999987


Q ss_pred             C
Q psy1873         155 D  155 (157)
Q Consensus       155 ~  155 (157)
                      +
T Consensus       246 E  246 (368)
T 2dby_A          246 E  246 (368)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.55  E-value=7e-15  Score=118.29  Aligned_cols=108  Identities=21%  Similarity=0.243  Sum_probs=77.2

Q ss_pred             CCCCCCChhhhHhhhhccc------------ccc------cccCCccceE-EEEEE------------ECCeEEEEEEEe
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ------------FVD------SYDPTIENTF-VKTTR------------MNNQDYDLKLVD   49 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~------------~~~------~~~~t~~~~~-~~~~~------------~~~~~~~~~i~D   49 (157)
                      ||..++|||||+++|+...            +.+      ....|+.... .....            .++..+.+.+||
T Consensus        25 iG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liD  104 (842)
T 1n0u_A           25 IAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLID  104 (842)
T ss_dssp             ECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEEC
T ss_pred             ECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEEE
Confidence            6999999999999998641            111      0011222111 11111            234578899999


Q ss_pred             CCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873          50 TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH  126 (157)
Q Consensus        50 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~  126 (157)
                      |+|+.+|...+..+++.+|++|+|+|+++..+++....|. .+...    .             +|+++++||+|+.
T Consensus       105 TPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~~----~-------------~p~ilviNK~D~~  163 (842)
T 1n0u_A          105 SPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALGE----R-------------IKPVVVINKVDRA  163 (842)
T ss_dssp             CCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHHT----T-------------CEEEEEEECHHHH
T ss_pred             CcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHHc----C-------------CCeEEEEECCCcc
Confidence            9999999999999999999999999999988888765543 22221    2             8999999999985

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.54  E-value=1.6e-15  Score=117.01  Aligned_cols=111  Identities=15%  Similarity=0.158  Sum_probs=73.3

Q ss_pred             CCCCCCChhhhHhhhhccccc---ccccCCccceEEEEEEECCe-------------------------------E----
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV---DSYDPTIENTFVKTTRMNNQ-------------------------------D----   42 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~-------------------------------~----   42 (157)
                      +|.+|+|||||+|+|++..+.   ....+++...  ..+..+..                               .    
T Consensus        71 vG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~--~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~~~~~  148 (550)
T 2qpt_A           71 AGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF--VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQL  148 (550)
T ss_dssp             EEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE--EEEECCSSSEEECCC------------------CCCTTEEEEEC
T ss_pred             ECCCCCCHHHHHHHHhCCccccCccCCCCccceE--EEEEECCcccccCCceeeecCcccHHHHhhhcccccccceEEec
Confidence            599999999999999998763   2223332110  00000000                               0    


Q ss_pred             -----EEEEEEeCCCCcc-----------CcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCC
Q psy1873          43 -----YDLKLVDTAGQDE-----------YSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKS  106 (157)
Q Consensus        43 -----~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~  106 (157)
                           ..+.+|||+|...           +......++..+|++|+|+|.++....+....|+..+..    ..      
T Consensus       149 ~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~------  218 (550)
T 2qpt_A          149 PNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HE------  218 (550)
T ss_dssp             CCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CG------
T ss_pred             cccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cC------
Confidence                 2578999999764           334556678899999999999886555555555554432    12      


Q ss_pred             CCCCCCCCcEEEEEeCCCCCCCce
Q psy1873         107 PTSCVSSVPIVLVGNKKDLHMERM  130 (157)
Q Consensus       107 ~~~~~~~~p~~vv~nK~Dl~~~~~  130 (157)
                             .|+++|+||+|+....+
T Consensus       219 -------~pvilVlNK~Dl~~~~e  235 (550)
T 2qpt_A          219 -------DKIRVVLNKADMVETQQ  235 (550)
T ss_dssp             -------GGEEEEEECGGGSCHHH
T ss_pred             -------CCEEEEEECCCccCHHH
Confidence                   88999999999875433

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.54  E-value=2.6e-14  Score=112.91  Aligned_cols=129  Identities=16%  Similarity=0.131  Sum_probs=84.5

Q ss_pred             CCCCCCChhhhHhhhhcc--cccc-----------c-------ccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch
Q psy1873           1 MGYRSVGKSSLSIQFVDG--QFVD-----------S-------YDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP   60 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~--~~~~-----------~-------~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   60 (157)
                      +|.+|+|||||+++|+..  .+..           .       ...|+... ...+..++  +.+.+|||+|+.+|....
T Consensus        16 vG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~-~~~~~~~~--~~i~liDTPG~~df~~~~   92 (693)
T 2xex_A           16 MAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSA-ATTAAWEG--HRVNIIDTPGHVDFTVEV   92 (693)
T ss_dssp             ECCGGGTHHHHHHHHHHHHSSCC-------------------------CCS-EEEEEETT--EEEEEECCCCCSSCCHHH
T ss_pred             ECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeee-eEEEEECC--eeEEEEECcCCcchHHHH
Confidence            699999999999999852  2110           0       01111111 22333443  678999999999999888


Q ss_pred             hhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH
Q psy1873          61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA  140 (157)
Q Consensus        61 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~  140 (157)
                      ..+++.+|++|+|+|.++..+.+....| ..+...    .             +|+++++||+|+....  .......+.
T Consensus        93 ~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~~----~-------------~p~ilviNK~Dl~~~~--~~~~~~~l~  152 (693)
T 2xex_A           93 ERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATTY----G-------------VPRIVFVNKMDKLGAN--FEYSVSTLH  152 (693)
T ss_dssp             HHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHHT----T-------------CCEEEEEECTTSTTCC--HHHHHHHHH
T ss_pred             HHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHHc----C-------------CCEEEEEECCCccccc--hHHHHHHHH
Confidence            9999999999999999988777665444 333322    2             9999999999986532  122233444


Q ss_pred             HHhCC----cEEEecc
Q psy1873         141 ESWKA----GFVEASA  152 (157)
Q Consensus       141 ~~~~~----~~~e~Sa  152 (157)
                      ..++.    ..+.+|+
T Consensus       153 ~~l~~~~~~~~ipisa  168 (693)
T 2xex_A          153 DRLQANAAPIQLPIGA  168 (693)
T ss_dssp             HHHCCCEEESEEEECC
T ss_pred             HHhCCCceeEEeeccc
Confidence            44443    3556665

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.48  E-value=5.3e-15  Score=108.67  Aligned_cols=90  Identities=16%  Similarity=0.184  Sum_probs=57.8

Q ss_pred             EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN  121 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n  121 (157)
                      .+.+.||||+|...   ........+|++++|+|.+..+.++.+...                      ..+.|+++|+|
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~----------------------~~~~p~ivVlN  225 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG----------------------VLELADIVVVN  225 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT----------------------SGGGCSEEEEE
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh----------------------HhhcCCEEEEE
Confidence            36789999999432   233455889999999998766544322210                      11278999999


Q ss_pred             CCCCCCCceecHHHHHHHHHH---h-------CCcEEEeccccCCC
Q psy1873         122 KKDLHMERMISYDEGKRLAES---W-------KAGFVEASAKQDDY  157 (157)
Q Consensus       122 K~Dl~~~~~~~~~~~~~~~~~---~-------~~~~~e~Sa~~~~~  157 (157)
                      |+|+....... .....+...   .       +.+++++||++|+|
T Consensus       226 K~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~G  270 (355)
T 3p32_A          226 KADGEHHKEAR-LAARELSAAIRLIYPREALWRPPVLTMSAVEGRG  270 (355)
T ss_dssp             CCCGGGHHHHH-HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBS
T ss_pred             CCCCcChhHHH-HHHHHHHHHHhhccccccCCCCceEEEEcCCCCC
Confidence            99985432221 112222222   1       57899999999986

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.46  E-value=5.6e-13  Score=105.55  Aligned_cols=109  Identities=17%  Similarity=0.152  Sum_probs=74.5

Q ss_pred             CCCCCCChhhhHhhhhccc--ccc------------------cccCCccceEEEEEEEC-----CeEEEEEEEeCCCCcc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ--FVD------------------SYDPTIENTFVKTTRMN-----NQDYDLKLVDTAGQDE   55 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~--~~~------------------~~~~t~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~   55 (157)
                      +|..++|||||+++|+...  +..                  ....|+... ...+.++     +..+.+.+|||+|+.+
T Consensus        16 iG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~i~liDTPG~~d   94 (704)
T 2rdo_7           16 SAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSA-ATTAFWSGMAKQYEPHRINIIDTPGHVD   94 (704)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeec-eEEEEECCccccCCceeEEEEeCCCccc
Confidence            6999999999999997431  110                  001121111 1122222     3347899999999999


Q ss_pred             CcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q psy1873          56 YSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME  128 (157)
Q Consensus        56 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~  128 (157)
                      |.......++.+|++|+|+|.++....+....| ..+...    .             +|+++++||+|+...
T Consensus        95 f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~~----~-------------ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           95 FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANKY----K-------------VPRIAFVNKMDRMGA  149 (704)
T ss_pred             hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHHc----C-------------CCEEEEEeCCCcccc
Confidence            999899999999999999999987665544333 332221    2             899999999998653

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.40  E-value=2.1e-14  Score=105.30  Aligned_cols=89  Identities=15%  Similarity=0.209  Sum_probs=50.3

Q ss_pred             EEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeC
Q psy1873          43 YDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK  122 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK  122 (157)
                      +.+.++||+|....   .......+|++++|+|.++....+.+..   .+                   .+.|.++|+||
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-------------------l~~~~ivVlNK  221 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-------------------IEMADLVAVTK  221 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC----------------------------------CCSCSEEEECC
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-------------------HhcCCEEEEee
Confidence            56789999995321   2445678999999999987644332211   11                   11678999999


Q ss_pred             CCCCCCceecHHHHHHHHH----------HhCCcEEEeccccCCC
Q psy1873         123 KDLHMERMISYDEGKRLAE----------SWKAGFVEASAKQDDY  157 (157)
Q Consensus       123 ~Dl~~~~~~~~~~~~~~~~----------~~~~~~~e~Sa~~~~~  157 (157)
                      +|+.+..... .....+..          .++.+++.+||++|+|
T Consensus       222 ~Dl~~~~~~~-~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~G  265 (349)
T 2www_A          222 SDGDLIVPAR-RIQAEYVSALKLLRKRSQVWKPKVIRISARSGEG  265 (349)
T ss_dssp             CSGGGHHHHH-HHHHHHHHHHTTCC-----CCCEEEECCTTTCTT
T ss_pred             ecCCCchhHH-HHHHHHHHHHHhcCccccCCCceEEEEecCCCCC
Confidence            9985421110 11222221          1245789999999986

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.40  E-value=6.6e-13  Score=93.32  Aligned_cols=72  Identities=22%  Similarity=0.068  Sum_probs=41.1

Q ss_pred             EEEEEEeCCCCccCcCchh------hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcE
Q psy1873          43 YDLKLVDTAGQDEYSIFPA------QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPI  116 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~~~~------~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~  116 (157)
                      +.+.+|||+|+........      ..+.+ ++++++.|.....+...................             .|+
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~-------------~p~  174 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLG-------------ATT  174 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHT-------------SCE
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccC-------------CCe
Confidence            5789999999876543322      13455 777888876543222222111111111111112             899


Q ss_pred             EEEEeCCCCCCC
Q psy1873         117 VLVGNKKDLHME  128 (157)
Q Consensus       117 ~vv~nK~Dl~~~  128 (157)
                      ++|+||+|+...
T Consensus       175 ~iv~NK~D~~~~  186 (262)
T 1yrb_A          175 IPALNKVDLLSE  186 (262)
T ss_dssp             EEEECCGGGCCH
T ss_pred             EEEEeccccccc
Confidence            999999998653

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.35  E-value=9e-14  Score=101.62  Aligned_cols=91  Identities=13%  Similarity=0.160  Sum_probs=53.7

Q ss_pred             EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN  121 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n  121 (157)
                      .+.+.+|||+|.....   ......+|++++|+|.+..+.++.+..      ...   .             .|.++|+|
T Consensus       148 ~~~i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~~~~l~~------~~~---~-------------~p~ivv~N  202 (341)
T 2p67_A          148 GYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKK------GLM---E-------------VADLIVIN  202 (341)
T ss_dssp             TCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCH------HHH---H-------------HCSEEEEC
T ss_pred             CCCEEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHHHHHHHH------hhh---c-------------ccCEEEEE
Confidence            3578999999965433   234689999999999876544321111      000   1             78899999


Q ss_pred             CCCCCCCceecH--HHHHHHHHHh-------CCcEEEeccccCCC
Q psy1873         122 KKDLHMERMISY--DEGKRLAESW-------KAGFVEASAKQDDY  157 (157)
Q Consensus       122 K~Dl~~~~~~~~--~~~~~~~~~~-------~~~~~e~Sa~~~~~  157 (157)
                      |+|+.....+..  .+........       ..+++++||++|+|
T Consensus       203 K~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~g  247 (341)
T 2p67_A          203 KDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRG  247 (341)
T ss_dssp             CCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBS
T ss_pred             CCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCC
Confidence            999865322211  1222222222       35789999999986

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.34  E-value=6.7e-12  Score=92.47  Aligned_cols=127  Identities=15%  Similarity=0.182  Sum_probs=82.0

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCc----Cchh---hhccCCCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS----IFPA---QYSMDIHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~~---~~~~~~~~~il   72 (157)
                      ||.||||||||+|++++.+. ...|..|+.+.....+.+++  ..+++.|+||-..-.    .+..   ...+.+|++++
T Consensus        78 vG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~  155 (376)
T 4a9a_A           78 VGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFI  155 (376)
T ss_dssp             ECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCcccc
Confidence            69999999999999998765 35566666666667777877  557899999954322    2222   24578999999


Q ss_pred             EEECCChhh-HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC--------CceecHHHHHHHHHHh
Q psy1873          73 VYSITSHKS-FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM--------ERMISYDEGKRLAESW  143 (157)
Q Consensus        73 v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~--------~~~~~~~~~~~~~~~~  143 (157)
                      |.|.+++.. ++.+...+..    ....           +.+.|..++.||.|...        ......++...+...+
T Consensus       156 vvD~~~p~~~~~~i~~EL~~----~~~~-----------l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~  220 (376)
T 4a9a_A          156 ILDVNKPLHHKQIIEKELEG----VGIR-----------LNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEY  220 (376)
T ss_dssp             EEETTSHHHHHHHHHHHHHH----TTEE-----------ETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHT
T ss_pred             ccccCccHHHHHHHHHHHHH----hhHh-----------hccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHh
Confidence            999998743 2223222222    1111           22378889999999631        1234455555555554


Q ss_pred             C
Q psy1873         144 K  144 (157)
Q Consensus       144 ~  144 (157)
                      .
T Consensus       221 ~  221 (376)
T 4a9a_A          221 R  221 (376)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.28  E-value=2.7e-12  Score=86.83  Aligned_cols=96  Identities=11%  Similarity=0.013  Sum_probs=58.8

Q ss_pred             CCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCC-CCCCC
Q psy1873          50 TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKK-DLHME  128 (157)
Q Consensus        50 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~-Dl~~~  128 (157)
                      .+||.+++++|..|+.++|++|+|.|.+|++.++ .+..+.++........         .+..+|++|++||. |+.. 
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~---------~L~gapLLVlANKqqDlp~-  177 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAF---------GSSGRPLLVLSCISQGDVK-  177 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTS---------SCSCSCEEEEEEESSTTSC-
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchh---------hhCCCeEEEEeCCCcCccC-
Confidence            4589999999999999999999999999987654 5554433332222110         01339999999995 7743 


Q ss_pred             ceecHHHHHHHHH----HhCCcEEEeccccCCC
Q psy1873         129 RMISYDEGKRLAE----SWKAGFVEASAKQDDY  157 (157)
Q Consensus       129 ~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~  157 (157)
                       .++..+..+...    ...+.++.|||++|+|
T Consensus       178 -Ams~~EI~e~L~L~~l~R~W~Iq~csA~TGeG  209 (227)
T 3l82_B          178 -RMPCFYLAHELHLNLLNHPWLVQDTEAETLTG  209 (227)
T ss_dssp             -BCCHHHHHHHTTGGGGCSCEEEEEEETTTCTT
T ss_pred             -CCCHHHHHHHcCCcCCCCCEEEEEeECCCCcC
Confidence             444444333221    1235789999999987

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.25  E-value=7.5e-12  Score=91.29  Aligned_cols=91  Identities=11%  Similarity=0.049  Sum_probs=52.9

Q ss_pred             EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN  121 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n  121 (157)
                      .+.+.++||+|...-.   ......+|.+++++|....+..+.+.....         .             .|.+++.|
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~---------~-------------~~~ivvlN  201 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIF---------E-------------LADMIAVN  201 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHH---------H-------------HCSEEEEE
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHHh---------c-------------cccEEEEE
Confidence            3567899999965322   234578899999999865433222211110         1             45667779


Q ss_pred             CCCCCCCceecHHHHHHHHHHh----------CCcEEEeccccCCC
Q psy1873         122 KKDLHMERMISYDEGKRLAESW----------KAGFVEASAKQDDY  157 (157)
Q Consensus       122 K~Dl~~~~~~~~~~~~~~~~~~----------~~~~~e~Sa~~~~~  157 (157)
                      |+|+...........+.+....          ..+++.+||++++|
T Consensus       202 K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~g  247 (337)
T 2qm8_A          202 KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKG  247 (337)
T ss_dssp             CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBS
T ss_pred             chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCC
Confidence            9997543333333334443322          35789999999976

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.22  E-value=1.6e-11  Score=97.36  Aligned_cols=97  Identities=21%  Similarity=0.074  Sum_probs=55.8

Q ss_pred             EEEEEeCCCCccC-------------cCchhhhc-cCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCC
Q psy1873          44 DLKLVDTAGQDEY-------------SIFPAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTS  109 (157)
Q Consensus        44 ~~~i~D~~g~~~~-------------~~~~~~~~-~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~  109 (157)
                      .+.++||||-...             ..+...++ ..+|++++|.|.+....-+....++..+    ....         
T Consensus       151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L----~~~g---------  217 (772)
T 3zvr_A          151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV----DPQG---------  217 (772)
T ss_dssp             SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHH----CTTC---------
T ss_pred             ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHH----HhcC---------
Confidence            4678999996541             11223333 5789999999998643322221222222    2222         


Q ss_pred             CCCCCcEEEEEeCCCCCCCceecHHHHHH--HHHHhC-CcEEEeccccCCC
Q psy1873         110 CVSSVPIVLVGNKKDLHMERMISYDEGKR--LAESWK-AGFVEASAKQDDY  157 (157)
Q Consensus       110 ~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~--~~~~~~-~~~~e~Sa~~~~~  157 (157)
                          .|+++|.||+|+.+...........  +...++ .+++.+||++|+|
T Consensus       218 ----~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~G  264 (772)
T 3zvr_A          218 ----QRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDG  264 (772)
T ss_dssp             ----SSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSS
T ss_pred             ----CCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEeccccccc
Confidence                8999999999987544332221110  000123 3677899999876

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.21  E-value=8.3e-12  Score=92.42  Aligned_cols=81  Identities=16%  Similarity=0.080  Sum_probs=44.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccC-CccceEEEEEEECCe---------------EEEEEEEeCCCCccCcC------
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDP-TIENTFVKTTRMNNQ---------------DYDLKLVDTAGQDEYSI------   58 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~~------   58 (157)
                      ||.+|||||||+|++++..+.....| ++.......+.+++.               ...+.+||++|..+...      
T Consensus        28 VG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg  107 (396)
T 2ohf_A           28 VGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLG  107 (396)
T ss_dssp             ECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------C
T ss_pred             ECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHHH
Confidence            69999999999999998766332222 221212334444432               23589999999876543      


Q ss_pred             -chhhhccCCCEEEEEEECCChhh
Q psy1873          59 -FPAQYSMDIHGYVLVYSITSHKS   81 (157)
Q Consensus        59 -~~~~~~~~~~~~ilv~d~~~~~s   81 (157)
                       .+..+++.+|++++|+|.++.++
T Consensus       108 ~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A          108 NAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             CHHHHHHHTSSSEEEEEEC-----
T ss_pred             HHHHHHHHhcCeEEEEEecCCCcc
Confidence             34567889999999999986544

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.12  E-value=2.8e-11  Score=85.62  Aligned_cols=93  Identities=11%  Similarity=-0.014  Sum_probs=62.4

Q ss_pred             CCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHH---HHHHHhccccCCCCCCCCCCCCCCcEEEEEeC-CCC
Q psy1873          50 TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYD---KLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK-KDL  125 (157)
Q Consensus        50 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK-~Dl  125 (157)
                      .+||.+.+.+|..|+.++|++|+|.|.+|++.++ .+..+.   .++.....            +.++|++|.+|| .|+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~------------l~~apLLVfANKkQDl  260 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFG------------SSGRPLLVLSCISQGD  260 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHH------------CTTCCEEEEEEESSTT
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhh------------cCCCeEEEEeCCcccc
Confidence            4789999999999999999999999999998765 444333   33322210            122999999996 688


Q ss_pred             CCCceecHHHHHHHHH----HhCCcEEEeccccCCC
Q psy1873         126 HMERMISYDEGKRLAE----SWKAGFVEASAKQDDY  157 (157)
Q Consensus       126 ~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~  157 (157)
                      ..  .++..+..+...    .....++.|||++|+|
T Consensus       261 p~--Ams~~EI~e~L~L~~l~r~W~Iq~csA~tGeG  294 (312)
T 3l2o_B          261 VK--RMPCFYLAHELHLNLLNHPWLVQDTEAETLTG  294 (312)
T ss_dssp             SC--BCCHHHHHHHTTGGGGCSCEEEEEEETTTCTT
T ss_pred             cC--CCCHHHHHHHcCCccCCCcEEEEecccCCCcC
Confidence            43  344444332211    1235689999999987

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.09  E-value=2.3e-09  Score=79.52  Aligned_cols=78  Identities=14%  Similarity=0.074  Sum_probs=51.2

Q ss_pred             CCCCCCChhhhHhhhhcccc-cc-cccCCccceEEEEEEECCe---------------EEEEEEEeCCCCccCc------
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VD-SYDPTIENTFVKTTRMNNQ---------------DYDLKLVDTAGQDEYS------   57 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~-~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~------   57 (157)
                      ||++|||||||+|++++... .. .+..++.......+.+++.               ...+.+||++|.....      
T Consensus        26 VG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L  105 (392)
T 1ni3_A           26 VGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGL  105 (392)
T ss_dssp             EECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSS
T ss_pred             ECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHH
Confidence            69999999999999998765 33 2322222222344555541               1357899999954321      


Q ss_pred             -CchhhhccCCCEEEEEEECCC
Q psy1873          58 -IFPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus        58 -~~~~~~~~~~~~~ilv~d~~~   78 (157)
                       ......++.+|+++.++|..+
T Consensus       106 ~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A          106 GNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CHHHHHHHTTCSEEEEEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHhccc
Confidence             123445688999999999864

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.06  E-value=7.8e-10  Score=85.40  Aligned_cols=123  Identities=14%  Similarity=0.123  Sum_probs=79.7

Q ss_pred             CCCCCCChhhhHhhhhccc------------------ccccc--cCCccceE---EEEEEECCeEEEEEEEeCCCCccCc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ------------------FVDSY--DPTIENTF---VKTTRMNNQDYDLKLVDTAGQDEYS   57 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~------------------~~~~~--~~t~~~~~---~~~~~~~~~~~~~~i~D~~g~~~~~   57 (157)
                      ||..++|||||..+|+...                  +.+..  ....+.+.   ...+.+++  +.+.|.||||+.+|.
T Consensus        37 iaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGHvDF~  114 (548)
T 3vqt_A           37 ISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDTPGHQDFS  114 (548)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECCCCGGGCS
T ss_pred             EeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeCCCcHHHH
Confidence            5889999999999996210                  11100  00001111   23334444  678999999999999


Q ss_pred             CchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHH
Q psy1873          58 IFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGK  137 (157)
Q Consensus        58 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~  137 (157)
                      .-....++-+|++|+|+|..+.-.-+...-| .......                 +|.+++.||.|....+.  .....
T Consensus       115 ~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~~-----------------lp~i~fINK~Dr~~ad~--~~~~~  174 (548)
T 3vqt_A          115 EDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMRA-----------------TPVMTFVNKMDREALHP--LDVMA  174 (548)
T ss_dssp             HHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHTT-----------------CCEEEEEECTTSCCCCH--HHHHH
T ss_pred             HHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHhC-----------------CceEEEEecccchhcch--hHhhh
Confidence            9999999999999999999887665554443 3333333                 99999999999754322  23344


Q ss_pred             HHHHHhCC
Q psy1873         138 RLAESWKA  145 (157)
Q Consensus       138 ~~~~~~~~  145 (157)
                      .+...++.
T Consensus       175 ~i~~~l~~  182 (548)
T 3vqt_A          175 DIEQHLQI  182 (548)
T ss_dssp             HHHHHHTS
T ss_pred             hhhhhcCC
Confidence            44455554

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.88  E-value=1.4e-09  Score=80.27  Aligned_cols=85  Identities=19%  Similarity=0.145  Sum_probs=61.8

Q ss_pred             CCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee
Q psy1873          52 GQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI  131 (157)
Q Consensus        52 g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~  131 (157)
                      .+++|..++..+.+.++++++|+|++++.     ..|...+.+...  .             .|+++|+||+|+.+.. .
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~--~-------------~p~ilV~NK~DL~~~~-~  113 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG--N-------------NKVLLVGNKADLIPKS-V  113 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS--S-------------SCEEEEEECGGGSCTT-S
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC--C-------------CcEEEEEEChhcCCcc-c
Confidence            46788888999999999999999999864     334444444332  2             8999999999996532 2


Q ss_pred             cHHHH----HHHHHHhCC---cEEEeccccCCC
Q psy1873         132 SYDEG----KRLAESWKA---GFVEASAKQDDY  157 (157)
Q Consensus       132 ~~~~~----~~~~~~~~~---~~~e~Sa~~~~~  157 (157)
                      ..++.    ..+++..|+   +++++||++|+|
T Consensus       114 ~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~g  146 (368)
T 3h2y_A          114 KHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQG  146 (368)
T ss_dssp             CHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTT
T ss_pred             CHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcC
Confidence            23333    334667787   799999999986

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.79  E-value=5e-08  Score=77.57  Aligned_cols=109  Identities=19%  Similarity=0.184  Sum_probs=71.7

Q ss_pred             CCCCCCChhhhHhhhhcc--------ccccc--ccCC------ccceE---EEEEEECC-----eEEEEEEEeCCCCccC
Q psy1873           1 MGYRSVGKSSLSIQFVDG--------QFVDS--YDPT------IENTF---VKTTRMNN-----QDYDLKLVDTAGQDEY   56 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~--------~~~~~--~~~t------~~~~~---~~~~~~~~-----~~~~~~i~D~~g~~~~   56 (157)
                      ||...+|||||..+|+..        .....  +.-+      .+.+.   ...+.+.+     ..+.+.+.||||+-+|
T Consensus        19 iaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF   98 (709)
T 4fn5_A           19 CAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDF   98 (709)
T ss_dssp             ECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCSCTTC
T ss_pred             EcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCccc
Confidence            578899999999998632        11100  0000      01111   22223322     3578999999999999


Q ss_pred             cCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873          57 SIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM  127 (157)
Q Consensus        57 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~  127 (157)
                      ..-....++-+|++|+|+|..+.-.-+... .|.+.....                 +|.+++.||.|...
T Consensus        99 ~~Ev~~aLr~~DgavlvVDaveGV~~qT~~-v~~~a~~~~-----------------lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           99 TIEVERSLRVLDGAVVVFCGTSGVEPQSET-VWRQANKYG-----------------VPRIVYVNKMDRQG  151 (709)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHHHT-----------------CCEEEEEECSSSTT
T ss_pred             HHHHHHHHHHhCeEEEEEECCCCCchhHHH-HHHHHHHcC-----------------CCeEEEEccccccC
Confidence            998888999999999999998765544333 333443333                 99999999999754

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.75  E-value=1.9e-09  Score=84.67  Aligned_cols=108  Identities=18%  Similarity=0.231  Sum_probs=72.2

Q ss_pred             CCCCCCChhhhHhhhhccc--------cccc--ccCC------ccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ--------FVDS--YDPT------IENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQY   63 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~--------~~~~--~~~t------~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   63 (157)
                      ||..++|||||..+|+...        ....  +.-.      .+.+. ...+.+..+.+.+.+.||||+.+|..-....
T Consensus         8 iaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~ra   87 (638)
T 3j25_A            8 LAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRS   87 (638)
T ss_dssp             ECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            5889999999999986311        1000  0000      01011 1222233345678999999999999999999


Q ss_pred             ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873          64 SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH  126 (157)
Q Consensus        64 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~  126 (157)
                      ++-+|++|+|+|..+.-.-+.. ..|.......                 +|.+++.||.|..
T Consensus        88 L~~~DgavlVVDa~~GV~~qT~-~v~~~a~~~~-----------------lp~i~~INKmDr~  132 (638)
T 3j25_A           88 LSVLDGAILLISAKDGVQAQTR-ILFHALRKMG-----------------IPTIFFINKIDQN  132 (638)
T ss_dssp             HTTCSEEECCEESSCTTCSHHH-HHHHHHHHHT-----------------CSCEECCEECCSS
T ss_pred             HHHhCEEEEEEeCCCCCcHHHH-HHHHHHHHcC-----------------CCeEEEEeccccc
Confidence            9999999999999876544433 3344444433                 8899999999975

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.72  E-value=3.7e-09  Score=77.97  Aligned_cols=86  Identities=22%  Similarity=0.210  Sum_probs=60.1

Q ss_pred             CCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce
Q psy1873          51 AGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM  130 (157)
Q Consensus        51 ~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~  130 (157)
                      ..+++|..+...++..++++++|+|++++.+     .|...+.....  .             .|+++|+||+|+.+. .
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~--~-------------~piilV~NK~DLl~~-~  114 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA--D-------------NPILLVGNKADLLPR-S  114 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT--T-------------SCEEEEEECGGGSCT-T
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC--C-------------CCEEEEEEChhcCCC-c
Confidence            3578899999999899999999999999874     23333333322  1             899999999998653 2


Q ss_pred             ecHHHHH----HHHHHhCC---cEEEeccccCCC
Q psy1873         131 ISYDEGK----RLAESWKA---GFVEASAKQDDY  157 (157)
Q Consensus       131 ~~~~~~~----~~~~~~~~---~~~e~Sa~~~~~  157 (157)
                      ...+...    .+++..|+   .++.+||++|.|
T Consensus       115 ~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~g  148 (369)
T 3ec1_A          115 VKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIG  148 (369)
T ss_dssp             CCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBT
T ss_pred             cCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCC
Confidence            2223333    34566676   689999999976

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.61  E-value=1.1e-08  Score=75.53  Aligned_cols=130  Identities=15%  Similarity=0.082  Sum_probs=70.2

Q ss_pred             CCCCCCChhhhHhhhhcc------ccc-ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc--------hhhhc-
Q psy1873           1 MGYRSVGKSSLSIQFVDG------QFV-DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF--------PAQYS-   64 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~------~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~-   64 (157)
                      +|.+|+|||||+|++++.      ... ..+..|+..  .....++..   +.++||||-.....+        ...++ 
T Consensus       168 vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~~~~  242 (369)
T 3ec1_A          168 VGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLKIITP  242 (369)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHHHHSC
T ss_pred             EcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHHHHhc
Confidence            599999999999999875      221 222222221  222233332   689999996433211        11222 


Q ss_pred             -cCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh
Q psy1873          65 -MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW  143 (157)
Q Consensus        65 -~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~  143 (157)
                       +..+.++++.+.....-+..+.+     +......             ..|++++.||.|....... ......+.+..
T Consensus       243 ~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~-------------~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~  303 (369)
T 3ec1_A          243 KREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGG-------------RRSFVCYMANELTVHRTKL-EKADSLYANQL  303 (369)
T ss_dssp             SSCCCCEEEEECTTEEEEETTTEE-----EEEEESS-------------SEEEEEEECTTSCEEEEEG-GGHHHHHHHHB
T ss_pred             ccccCceEEEEcCCceEEECCEEE-----EEEccCC-------------CceEEEEecCCcccccccH-HHHHHHHHHhc
Confidence             55677888877632211111110     1111111             2899999999998654433 23345566666


Q ss_pred             CCcEEEecccc
Q psy1873         144 KAGFVEASAKQ  154 (157)
Q Consensus       144 ~~~~~e~Sa~~  154 (157)
                      |......++.+
T Consensus       304 g~~l~p~~~~~  314 (369)
T 3ec1_A          304 GELLSPPSKRY  314 (369)
T ss_dssp             TTTBCSSCGGG
T ss_pred             CCccCCCCchh
Confidence            76555555443

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.50  E-value=8.7e-09  Score=75.97  Aligned_cols=128  Identities=11%  Similarity=0.051  Sum_probs=65.5

Q ss_pred             CCCCCCChhhhHhhhhccccc--------ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc----hh----hh-
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV--------DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF----PA----QY-   63 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~--------~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----~~----~~-   63 (157)
                      +|.+|+|||||+|++++....        .....|+..  .....++..   +.++||||-.....+    ..    .+ 
T Consensus       166 vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~~~  240 (368)
T 3h2y_A          166 VGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLD--LIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLKLIT  240 (368)
T ss_dssp             EEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----C--EEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHHHHS
T ss_pred             ecCCCCChhHHHHHHHhhhccccccceecCCCCCeecc--eEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHHHhc
Confidence            599999999999999875311        111111111  222233332   689999996433311    11    11 


Q ss_pred             -ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH
Q psy1873          64 -SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES  142 (157)
Q Consensus        64 -~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~  142 (157)
                       .+..+.++++++.....-+..+..     +......             ..|++++.||.|....... ......+.+.
T Consensus       241 ~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~-------------~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~  301 (368)
T 3h2y_A          241 PTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGG-------------RRAFTCHFSNRLTIHRTKL-EKADELYKNH  301 (368)
T ss_dssp             CSSCCCCEEEEECTTEEEEETTTEE-----EEEEESS-------------SEEEEEEECTTSCEEEEEH-HHHHHHHHHH
T ss_pred             cccccCceEEEEcCCCEEEEcceEE-----EEEecCC-------------CceEEEEecCccccccccH-HHHHHHHHHH
Confidence             245566777766532211111100     1111111             2899999999998654333 2334455566


Q ss_pred             hCCcEEEecc
Q psy1873         143 WKAGFVEASA  152 (157)
Q Consensus       143 ~~~~~~e~Sa  152 (157)
                      .|...+..++
T Consensus       302 ~g~~l~p~~~  311 (368)
T 3h2y_A          302 AGDLLSPPTP  311 (368)
T ss_dssp             BTTTBCSSCH
T ss_pred             hCCccCCCch
Confidence            6654444343

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.49  E-value=1.6e-07  Score=71.80  Aligned_cols=81  Identities=15%  Similarity=0.188  Sum_probs=45.7

Q ss_pred             EEEEEEEeCCCCccCcC-chhh---h--ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc
Q psy1873          42 DYDLKLVDTAGQDEYSI-FPAQ---Y--SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP  115 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~-~~~~---~--~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p  115 (157)
                      .+.+.|+||+|...... +...   .  ...+|.+++|.|.+.....   ......+...                  .|
T Consensus       183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~~------------------~~  241 (504)
T 2j37_W          183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKDK------------------VD  241 (504)
T ss_dssp             TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHHH------------------HC
T ss_pred             CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHhh------------------cC
Confidence            35789999999764321 1111   1  2268999999998875431   1112222211                  56


Q ss_pred             E-EEEEeCCCCCCCceecHHHHHHHHHHhCCcE
Q psy1873         116 I-VLVGNKKDLHMERMISYDEGKRLAESWKAGF  147 (157)
Q Consensus       116 ~-~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  147 (157)
                      + .||.||.|......    .+.......++|+
T Consensus       242 i~gvVlNK~D~~~~~g----~~l~~~~~~g~PI  270 (504)
T 2j37_W          242 VASVIVTKLDGHAKGG----GALSAVAATKSPI  270 (504)
T ss_dssp             CCCEEEECTTSCCCCT----HHHHHHHHHCCCE
T ss_pred             ceEEEEeCCccccchH----HHHHHHHHhCCCe
Confidence            4 89999999753211    1223444566654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.48  E-value=1.3e-07  Score=67.29  Aligned_cols=87  Identities=11%  Similarity=-0.047  Sum_probs=56.7

Q ss_pred             EEeCCCCc-cCcCchhhhccCCCEEEEEEECCChhhHH--HHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCC
Q psy1873          47 LVDTAGQD-EYSIFPAQYSMDIHGYVLVYSITSHKSFE--VVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKK  123 (157)
Q Consensus        47 i~D~~g~~-~~~~~~~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~  123 (157)
                      |-..||+. .........++.+|+++.|+|+.++.+..  .+.+++        . .             .|.++|+||+
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~-~-------------kp~ilVlNK~   60 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------K-N-------------KPRIMLLNKA   60 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------S-S-------------SCEEEEEECG
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------C-C-------------CCEEEEEECc
Confidence            34567765 33344566788999999999999988764  344442        1 2             8999999999


Q ss_pred             CCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873         124 DLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus       124 Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      |+.+...  .+....+.+..+++++.+||+++.|
T Consensus        61 DL~~~~~--~~~~~~~~~~~g~~~i~iSA~~~~g   92 (282)
T 1puj_A           61 DKADAAV--TQQWKEHFENQGIRSLSINSVNGQG   92 (282)
T ss_dssp             GGSCHHH--HHHHHHHHHTTTCCEEECCTTTCTT
T ss_pred             ccCCHHH--HHHHHHHHHhcCCcEEEEECCCccc
Confidence            9965211  1222334445678999999999875

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.46  E-value=2.4e-07  Score=69.30  Aligned_cols=20  Identities=30%  Similarity=0.526  Sum_probs=17.7

Q ss_pred             CCCCCCChhhhHhhhhcccc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF   20 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~   20 (157)
                      ||++|+|||||++.+.+..+
T Consensus        48 vG~nGaGKSTLln~L~G~~l   67 (427)
T 2qag_B           48 VGETGLGKSTLMDTLFNTKF   67 (427)
T ss_dssp             ECSTTSSSHHHHHHHHTSCC
T ss_pred             ECCCCCCHHHHHHHHhCccc
Confidence            69999999999999987654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.19  E-value=7.3e-07  Score=63.01  Aligned_cols=19  Identities=32%  Similarity=0.490  Sum_probs=16.8

Q ss_pred             CCCCCCChhhhHhhhhccc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ   19 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~   19 (157)
                      ||++|+|||||++.+.+..
T Consensus         8 vG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            8 VGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EESSSSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999998643

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.19  E-value=3.2e-06  Score=60.78  Aligned_cols=86  Identities=12%  Similarity=0.026  Sum_probs=56.0

Q ss_pred             cCcCchhhhccCCCEEEEEEECCChhh-HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee--
Q psy1873          55 EYSIFPAQYSMDIHGYVLVYSITSHKS-FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI--  131 (157)
Q Consensus        55 ~~~~~~~~~~~~~~~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~--  131 (157)
                      +...+......++|.+++|+|+.+|.. ...+.+++...    ....             +|.+||.||+|+.+....  
T Consensus        75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~----~~~~-------------~~~vivlnK~DL~~~~~~~~  137 (307)
T 1t9h_A           75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV----EAND-------------IQPIICITKMDLIEDQDTED  137 (307)
T ss_dssp             CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH----HTTT-------------CEEEEEEECGGGCCCHHHHH
T ss_pred             hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH----HHCC-------------CCEEEEEECCccCchhhhHH
Confidence            334455557899999999999987654 34444443222    2112             889999999999764321  


Q ss_pred             cHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873         132 SYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus       132 ~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ..+...++-...|.+.+.+||++|.|
T Consensus       138 ~~~~~~~~y~~~g~~v~~~sa~~~~g  163 (307)
T 1t9h_A          138 TIQAYAEDYRNIGYDVYLTSSKDQDS  163 (307)
T ss_dssp             HHHHHHHHHHHHTCCEEECCHHHHTT
T ss_pred             HHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            12333444455688999999988754

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.10  E-value=1.4e-05  Score=59.71  Aligned_cols=18  Identities=28%  Similarity=0.182  Sum_probs=16.4

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||+|.+.+.
T Consensus        75 vG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           75 TGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             EECTTSSHHHHHHHHHTC
T ss_pred             ECCCCCcHHHHHHHHhCC
Confidence            699999999999999874

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.02  E-value=1e-06  Score=62.04  Aligned_cols=51  Identities=20%  Similarity=0.212  Sum_probs=29.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCcc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDE   55 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~   55 (157)
                      +|.+|||||||+|++.+...... .++.+.+. ...+..+.   .+.+|||||...
T Consensus       105 vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          105 VGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             EESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             eCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            59999999999999997665211 12222111 11122222   468999999654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.00  E-value=1.7e-05  Score=59.60  Aligned_cols=86  Identities=16%  Similarity=-0.001  Sum_probs=50.9

Q ss_pred             EEEEEEeCCCCccCcCch-h-----hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcE
Q psy1873          43 YDLKLVDTAGQDEYSIFP-A-----QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPI  116 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~~~-~-----~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~  116 (157)
                      +.+.|+||+|......-. .     .....++.+++|.|.+....-..   ....+....                 .+.
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~~-----------------~i~  242 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEAT-----------------PIG  242 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHSC-----------------TTE
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhhC-----------------CCe
Confidence            678899999965433211 1     11235688999999876433221   122222211                 446


Q ss_pred             EEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecc
Q psy1873         117 VLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA  152 (157)
Q Consensus       117 ~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  152 (157)
                      .||.||.|....    ...+..+....++|+..++.
T Consensus       243 gVIlTKlD~~~~----gG~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          243 SIIVTKLDGSAK----GGGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             EEEEECCSSCSS----HHHHHHHHHTTCCCEEEEEC
T ss_pred             EEEEECCCCccc----ccHHHHHHHHHCCCEEEEEc
Confidence            799999997432    22345556677888877765

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.98  E-value=2.8e-06  Score=60.41  Aligned_cols=49  Identities=24%  Similarity=0.395  Sum_probs=28.4

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccC-CccceEEEEEEECCeEEEEEEEeCCCCc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDP-TIENTFVKTTRMNNQDYDLKLVDTAGQD   54 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~   54 (157)
                      +|.+|||||||+|++.+.... ....+ ++..  ...+..+.   .+.+|||||-.
T Consensus       126 vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          126 IGIPNVGKSTLINRLAKKNIAKTGDRPGITTS--QQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             EESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred             EecCCCchHHHHHHHhcCceeecCCCCCeeee--eEEEEeCC---CEEEEECcCcC
Confidence            599999999999999976532 11111 1111  11122222   46899999964

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.95  E-value=3.6e-06  Score=59.17  Aligned_cols=83  Identities=12%  Similarity=-0.000  Sum_probs=52.6

Q ss_pred             CCCCccCc-CchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q psy1873          50 TAGQDEYS-IFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME  128 (157)
Q Consensus        50 ~~g~~~~~-~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~  128 (157)
                      .||+.... ......+..+|+++.|+|+.++.+.....  +. ++      .             .|.++|.||+|+.+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-ll------~-------------k~~iivlNK~DL~~~   61 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-FS------R-------------KETIILLNKVDIADE   61 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-CT------T-------------SEEEEEEECGGGSCH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-hc------C-------------CCcEEEEECccCCCH
Confidence            46665433 34566778999999999999887654311  01 11      2             899999999999653


Q ss_pred             ceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873         129 RMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ..  .+....+.+..|+++ .+||+++.|
T Consensus        62 ~~--~~~~~~~~~~~g~~v-~iSa~~~~g   87 (262)
T 3cnl_A           62 KT--TKKWVEFFKKQGKRV-ITTHKGEPR   87 (262)
T ss_dssp             HH--HHHHHHHHHHTTCCE-EECCTTSCH
T ss_pred             HH--HHHHHHHHHHcCCeE-EEECCCCcC
Confidence            21  122233445568888 999999864

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=97.82  E-value=7e-06  Score=63.85  Aligned_cols=55  Identities=22%  Similarity=0.219  Sum_probs=32.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCc-cc---eEEEEEEE-CCeEEEEEEEeCCCCcc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTI-EN---TFVKTTRM-NNQDYDLKLVDTAGQDE   55 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~-~~---~~~~~~~~-~~~~~~~~i~D~~g~~~   55 (157)
                      +|.+|||||||+|++++....-....|. +.   .+.+...+ ......+.++||+|...
T Consensus        44 vG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           44 VGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             EEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             ECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            6999999999999999876321222222 11   11111111 12234578999999654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.81  E-value=5.9e-05  Score=55.26  Aligned_cols=77  Identities=18%  Similarity=0.171  Sum_probs=47.8

Q ss_pred             hccCCCEEEEEEECCChh-hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec-HHHHHHHH
Q psy1873          63 YSMDIHGYVLVYSITSHK-SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS-YDEGKRLA  140 (157)
Q Consensus        63 ~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~-~~~~~~~~  140 (157)
                      ...++|.+++|.+.. |. +...+.+++.......                 +|.+||.||+|+.+..... .++.....
T Consensus       127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~~-----------------~~~iivlNK~DL~~~~~~~~~~~~~~~y  188 (358)
T 2rcn_A          127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCETLQ-----------------VEPLIVLNKIDLLDDEGMDFVNEQMDIY  188 (358)
T ss_dssp             EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHHT-----------------CEEEEEEECGGGCCHHHHHHHHHHHHHH
T ss_pred             HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhcC-----------------CCEEEEEECccCCCchhHHHHHHHHHHH
Confidence            367889999887654 54 3444444443322222                 7889999999996542210 11122223


Q ss_pred             HHhCCcEEEeccccCCC
Q psy1873         141 ESWKAGFVEASAKQDDY  157 (157)
Q Consensus       141 ~~~~~~~~e~Sa~~~~~  157 (157)
                      ...|++.+.+||+++.|
T Consensus       189 ~~~G~~v~~~Sa~~~~g  205 (358)
T 2rcn_A          189 RNIGYRVLMVSSHTQDG  205 (358)
T ss_dssp             HTTTCCEEECBTTTTBT
T ss_pred             HhCCCcEEEEecCCCcC
Confidence            45688999999999875

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.81  E-value=3e-05  Score=58.31  Aligned_cols=84  Identities=17%  Similarity=0.074  Sum_probs=47.6

Q ss_pred             EEEEEEEeCCCCccCcC-chh-----hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCC-
Q psy1873          42 DYDLKLVDTAGQDEYSI-FPA-----QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSV-  114 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~-~~~-----~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-  114 (157)
                      .+.+.|.||+|...... +..     .....+|.+++|.|.+....   .......+   ..  .             . 
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~~--~-------------~~  238 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---KE--A-------------VG  238 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---HT--T-------------SC
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---hh--c-------------cc
Confidence            35678999999765321 111     11225789999999765432   21111111   11  1             5 


Q ss_pred             c-EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873         115 P-IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA  150 (157)
Q Consensus       115 p-~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  150 (157)
                      | ..+|.||.|.....    ..+..+....+.|+..+
T Consensus       239 ~i~gvVlnK~D~~~~~----g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          239 EIGSIIVTKLDGSAKG----GGALSAVAETKAPIKFI  271 (432)
T ss_dssp             SCEEEEEECSSSCSTT----HHHHHHHHHSSCCEEEE
T ss_pred             CCeEEEEeCCCCccch----HHHHHHHHHHCCCEEEe
Confidence            5 78999999974321    22344666677776554

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.68  E-value=0.00012  Score=55.06  Aligned_cols=87  Identities=14%  Similarity=0.034  Sum_probs=51.5

Q ss_pred             EEEEEEEeCCCCcc--CcC-chhh-----hccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCC
Q psy1873          42 DYDLKLVDTAGQDE--YSI-FPAQ-----YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSS  113 (157)
Q Consensus        42 ~~~~~i~D~~g~~~--~~~-~~~~-----~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  113 (157)
                      .+.+.|.|++|...  ... +...     ..-..+.+++|.|.........   ....+.+..                 
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~~-----------------  238 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQAS-----------------  238 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHHC-----------------
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhccc-----------------
Confidence            45678999999654  221 1111     1124588999999876433222   222232222                 


Q ss_pred             CcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecc
Q psy1873         114 VPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA  152 (157)
Q Consensus       114 ~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  152 (157)
                      .+..||.||.|...    ....+.......++|+..++.
T Consensus       239 ~~~gVIlTKlD~~a----~~G~als~~~~~g~Pi~fig~  273 (433)
T 3kl4_A          239 PIGSVIITKMDGTA----KGGGALSAVVATGATIKFIGT  273 (433)
T ss_dssp             SSEEEEEECGGGCS----CHHHHHHHHHHHTCEEEEEEC
T ss_pred             CCcEEEEecccccc----cchHHHHHHHHHCCCEEEEEC
Confidence            55789999999743    123455666677998877765

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.56  E-value=0.00019  Score=51.27  Aligned_cols=85  Identities=14%  Similarity=0.028  Sum_probs=51.1

Q ss_pred             EEEEEEEeCCCCcc--CcC-chh-----hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCC
Q psy1873          42 DYDLKLVDTAGQDE--YSI-FPA-----QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSS  113 (157)
Q Consensus        42 ~~~~~i~D~~g~~~--~~~-~~~-----~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  113 (157)
                      .+.+.+.||+|...  ... +..     .....+|.+++|.|....   ++.......+..    .              
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~----~--------------  238 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ----A--------------  238 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH----T--------------
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh----h--------------
Confidence            45688999999876  321 111     123468899999987643   222222222221    1              


Q ss_pred             Cc-EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873         114 VP-IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus       114 ~p-~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                      .| ..+|.||.|....    ...+..++...++|+..++
T Consensus       239 ~~i~gvVlnk~D~~~~----~g~~~~~~~~~~~pi~~i~  273 (297)
T 1j8m_F          239 SKIGTIIITKMDGTAK----GGGALSAVAATGATIKFIG  273 (297)
T ss_dssp             CTTEEEEEECGGGCTT----HHHHHHHHHTTTCCEEEEE
T ss_pred             CCCCEEEEeCCCCCcc----hHHHHHHHHHHCcCEEEEe
Confidence            45 7789999996432    2345567777888877665

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.46  E-value=0.00014  Score=56.95  Aligned_cols=19  Identities=32%  Similarity=0.310  Sum_probs=17.1

Q ss_pred             CCCCCCChhhhHhhhhccc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ   19 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~   19 (157)
                      ||++|||||||++.+.+-.
T Consensus        51 vG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           51 IGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCCTTSCHHHHHHHHHSCC
T ss_pred             ECCCCChHHHHHHHHhCCC
Confidence            7999999999999998753

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.46  E-value=2.2e-06  Score=65.07  Aligned_cols=92  Identities=14%  Similarity=0.081  Sum_probs=51.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCcc--CcCch--------hhhccCCCE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDE--YSIFP--------AQYSMDIHG   69 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~--~~~~~--------~~~~~~~~~   69 (157)
                      +|.+|+||||+.++|...-... ..++..... .......+......+||..|++.  ....+        ..++....+
T Consensus        45 vGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G  123 (469)
T 1bif_A           45 VGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGG  123 (469)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            5999999999999997542211 111111000 00000111123346799988733  22222        456666778


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHH
Q psy1873          70 YVLVYSITSHKSFEVVQILYDKLLD   94 (157)
Q Consensus        70 ~ilv~d~~~~~s~~~~~~~~~~i~~   94 (157)
                      .++|+|.++. +.+....|+..+..
T Consensus       124 ~~vV~D~tn~-~~~~R~~~~~~~~~  147 (469)
T 1bif_A          124 HVAVFDATNT-TRERRAMIFNFGEQ  147 (469)
T ss_dssp             SEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCC-CHHHHHHHHHHHHh
Confidence            8999999987 45555556554443

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.39  E-value=0.00071  Score=49.03  Aligned_cols=85  Identities=13%  Similarity=0.007  Sum_probs=46.9

Q ss_pred             EEEEEEeCCCCccCcCchhhh------ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcE
Q psy1873          43 YDLKLVDTAGQDEYSIFPAQY------SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPI  116 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~~~~~~------~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~  116 (157)
                      +.+.+.|++|...........      .-..|-.+++.|.....   ++......+....                 -.-
T Consensus       212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~-----------------~it  271 (328)
T 3e70_C          212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV-----------------KID  271 (328)
T ss_dssp             CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS-----------------CCC
T ss_pred             chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc-----------------CCC
Confidence            345679999975443321111      11357788888866543   3333333332222                 234


Q ss_pred             EEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873         117 VLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus       117 ~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                      .|+.||.|...  .  ...+.......++|+..++
T Consensus       272 ~iilTKlD~~a--~--~G~~l~~~~~~~~pi~~i~  302 (328)
T 3e70_C          272 GIILTKLDADA--R--GGAALSISYVIDAPILFVG  302 (328)
T ss_dssp             EEEEECGGGCS--C--CHHHHHHHHHHTCCEEEEE
T ss_pred             EEEEeCcCCcc--c--hhHHHHHHHHHCCCEEEEe
Confidence            78889999522  1  1335566677788877665

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=96.93  E-value=0.00082  Score=50.67  Aligned_cols=18  Identities=28%  Similarity=0.060  Sum_probs=16.3

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++++|||+|+|+|++.
T Consensus        73 ~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           73 AGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHhhh
Confidence            699999999999999864

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.87  E-value=0.00029  Score=46.44  Aligned_cols=18  Identities=17%  Similarity=0.457  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+.+.
T Consensus        11 ~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A           11 LGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            599999999999999763

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.78  E-value=0.00037  Score=46.70  Aligned_cols=17  Identities=29%  Similarity=0.397  Sum_probs=15.6

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||++.+.+
T Consensus        10 vGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A           10 SGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            69999999999999875

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.74  E-value=0.00042  Score=45.74  Aligned_cols=18  Identities=33%  Similarity=0.510  Sum_probs=15.8

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus         6 ~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            6 TGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999988753

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.67  E-value=0.00054  Score=44.78  Aligned_cols=16  Identities=25%  Similarity=0.468  Sum_probs=14.1

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|++|||||||++.+.
T Consensus        15 ~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           15 IGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             ECCTTSCHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHc
Confidence            6999999999999654

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.62  E-value=0.00056  Score=45.66  Aligned_cols=18  Identities=28%  Similarity=0.309  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+.+.
T Consensus        13 ~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A           13 SAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHhh
Confidence            599999999999998764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.62  E-value=0.00056  Score=46.05  Aligned_cols=18  Identities=28%  Similarity=0.327  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+.+-
T Consensus        26 ~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           26 SGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            699999999999998754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.57  E-value=0.00064  Score=46.42  Aligned_cols=18  Identities=28%  Similarity=0.257  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+.+.
T Consensus        22 ~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           22 SAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcc
Confidence            599999999999998764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.54  E-value=0.00067  Score=46.15  Aligned_cols=18  Identities=28%  Similarity=0.458  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+.+.
T Consensus        29 vGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           29 CGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            699999999999998763

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.50  E-value=0.00076  Score=45.32  Aligned_cols=18  Identities=22%  Similarity=0.464  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||+++|++.
T Consensus        25 ~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           25 IGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHhh
Confidence            599999999999999853

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.49  E-value=0.00064  Score=44.87  Aligned_cols=18  Identities=22%  Similarity=0.296  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+.+.
T Consensus        15 ~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           15 SGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EECTTSCHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHHhc
Confidence            599999999999999764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.45  E-value=0.00087  Score=49.11  Aligned_cols=19  Identities=42%  Similarity=0.406  Sum_probs=16.9

Q ss_pred             CCCCCCChhhhHhhhhccc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ   19 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~   19 (157)
                      +|++|||||||+|.+.+..
T Consensus       221 vG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          221 AGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             ECCTTSSHHHHHHHHHCCS
T ss_pred             ECCCCccHHHHHHHHhccc
Confidence            6999999999999998753

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.41  E-value=0.014  Score=43.86  Aligned_cols=84  Identities=17%  Similarity=0.067  Sum_probs=46.9

Q ss_pred             EEEEEEEeCCCCccCcC-chh-----hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc
Q psy1873          42 DYDLKLVDTAGQDEYSI-FPA-----QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP  115 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~-~~~-----~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p  115 (157)
                      .+.+.|.||+|...... +..     .....++.+++|.|......   +......+...                  .+
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~~------------------l~  241 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNEA------------------LP  241 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHHH------------------SC
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhcc------------------CC
Confidence            46788999999765432 111     12346788999999875432   22222222111                  44


Q ss_pred             -EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873         116 -IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA  150 (157)
Q Consensus       116 -~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  150 (157)
                       .-||.||.|....  .  ..+..+....++|+..+
T Consensus       242 i~gvVlnK~D~~~~--~--g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          242 LTGVVLTKVDGDAR--G--GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             CCCEEEECTTSSSC--C--THHHHHHHHHCCCEEEE
T ss_pred             CeEEEEecCCCCcc--H--HHHHHHHHHHCCCeEEE
Confidence             3479999996432  1  23445666667765443

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.40  E-value=0.00097  Score=45.97  Aligned_cols=17  Identities=29%  Similarity=0.217  Sum_probs=15.6

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||++.+.+
T Consensus        37 iG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A           37 MGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             ECSTTSSHHHHHHHHTT
T ss_pred             ECCCCCcHHHHHHHHhc
Confidence            69999999999999875

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.39  E-value=0.00095  Score=44.98  Aligned_cols=18  Identities=22%  Similarity=0.315  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.|.+.
T Consensus        14 ~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A           14 SGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             ECCTTSCHHHHHHHHHHS
T ss_pred             ECcCCCCHHHHHHHHHhh
Confidence            599999999999999764

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.37  E-value=0.00093  Score=44.96  Aligned_cols=17  Identities=35%  Similarity=0.393  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||++.+.+
T Consensus        28 ~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           28 SGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             ECCTTSCTHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.33  E-value=0.0011  Score=47.41  Aligned_cols=19  Identities=42%  Similarity=0.452  Sum_probs=16.7

Q ss_pred             CCCCCCChhhhHhhhhccc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ   19 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~   19 (157)
                      +|++|||||||++.+.+..
T Consensus       175 ~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          175 AGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             ECSTTSSHHHHHHHHSTTC
T ss_pred             ECCCCCcHHHHHHHhcccc
Confidence            6999999999999998643

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.29  E-value=0.0012  Score=42.75  Aligned_cols=19  Identities=26%  Similarity=0.419  Sum_probs=16.7

Q ss_pred             CCCCCCChhhhHhhhhccc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ   19 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~   19 (157)
                      +|+.|+|||||++.+.+.-
T Consensus        39 ~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           39 NGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             ECSTTSSHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHhC
Confidence            5999999999999998754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.28  E-value=0.0012  Score=47.23  Aligned_cols=16  Identities=38%  Similarity=0.480  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|++|||||||+|.+.
T Consensus       171 ~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          171 AGPSGVGKSSILSRLT  186 (302)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6999999999999998

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.28  E-value=0.0012  Score=43.89  Aligned_cols=18  Identities=28%  Similarity=0.337  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +||+|||||||+++|+..
T Consensus         7 ~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            7 SGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999999754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.24  E-value=0.0011  Score=45.35  Aligned_cols=18  Identities=28%  Similarity=0.172  Sum_probs=15.9

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+-
T Consensus        36 iG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           36 IGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EECTTSCHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999998753

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.22  E-value=0.0013  Score=44.03  Aligned_cols=18  Identities=28%  Similarity=0.392  Sum_probs=15.8

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++++...
T Consensus        18 ~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           18 CGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999998753

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.22  E-value=0.0014  Score=45.32  Aligned_cols=18  Identities=22%  Similarity=0.185  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+-
T Consensus        30 iG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           30 LGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             ECCTTSSHHHHHHHHHTS
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999998763

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.22  E-value=0.0014  Score=45.87  Aligned_cols=18  Identities=22%  Similarity=0.093  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+.+-
T Consensus        38 iG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           38 IGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            699999999999998763

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.21  E-value=0.0017  Score=42.51  Aligned_cols=18  Identities=28%  Similarity=0.536  Sum_probs=15.8

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus        44 ~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           44 VGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCSSSSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999998753

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.20  E-value=0.0014  Score=43.27  Aligned_cols=17  Identities=29%  Similarity=0.385  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|+|||||++.+.+
T Consensus         8 ~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            8 TGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHhc
Confidence            59999999999999974

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.19  E-value=0.0015  Score=46.15  Aligned_cols=17  Identities=41%  Similarity=0.548  Sum_probs=15.7

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||++.+.+
T Consensus        40 iGpnGsGKSTLl~~l~G   56 (275)
T 3gfo_A           40 LGGNGVGKSTLFQNFNG   56 (275)
T ss_dssp             ECCTTSSHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHc
Confidence            69999999999999876

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.17  E-value=0.0014  Score=43.66  Aligned_cols=18  Identities=22%  Similarity=0.414  Sum_probs=15.8

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++||||||+++.+.+.
T Consensus        12 ~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A           12 SGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             ECSTTSCHHHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999998754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.16  E-value=0.0016  Score=44.24  Aligned_cols=18  Identities=22%  Similarity=0.272  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+-
T Consensus        41 iG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           41 HGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            699999999999998763

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.16  E-value=0.0016  Score=44.95  Aligned_cols=18  Identities=33%  Similarity=0.403  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+-
T Consensus        37 ~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           37 VGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             ECSTTSSHHHHHHHHTTC
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            699999999999998763

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.14  E-value=0.0016  Score=45.47  Aligned_cols=18  Identities=28%  Similarity=0.242  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+-
T Consensus        39 iG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           39 IGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             ECSTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999998753

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.14  E-value=0.0016  Score=45.71  Aligned_cols=18  Identities=28%  Similarity=0.303  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+-
T Consensus        43 iG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           43 IGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             ECCTTSCHHHHHHHHTSS
T ss_pred             ECCCCCcHHHHHHHHhcC
Confidence            699999999999998763

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.11  E-value=0.0017  Score=42.13  Aligned_cols=17  Identities=29%  Similarity=0.470  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++||||||+.+.+.+
T Consensus        10 ~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A           10 VGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998865

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.10  E-value=0.0018  Score=45.45  Aligned_cols=18  Identities=22%  Similarity=0.098  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+-
T Consensus        56 iG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           56 IGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             EcCCCCcHHHHHHHHHcC
Confidence            699999999999998763

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.07  E-value=0.0018  Score=44.93  Aligned_cols=18  Identities=28%  Similarity=0.278  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+-
T Consensus        41 ~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           41 VGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             ECSTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            699999999999998763

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.07  E-value=0.0016  Score=44.00  Aligned_cols=18  Identities=22%  Similarity=0.276  Sum_probs=16.3

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+-
T Consensus        28 iG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           28 LGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             ECCTTSSTTHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            699999999999998865

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.06  E-value=0.00047  Score=49.49  Aligned_cols=18  Identities=39%  Similarity=0.361  Sum_probs=15.8

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||+|.+.+.
T Consensus       179 vG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          179 AGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             EESHHHHHHHHHHHHCC-
T ss_pred             ECCCCCCHHHHHHHhccc
Confidence            699999999999999864

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.05  E-value=0.002  Score=44.24  Aligned_cols=18  Identities=28%  Similarity=0.429  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+-
T Consensus        40 ~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           40 AGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999998763

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.05  E-value=0.0019  Score=44.64  Aligned_cols=18  Identities=22%  Similarity=0.084  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+-
T Consensus        34 ~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           34 AGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            699999999999998753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.04  E-value=0.0019  Score=44.60  Aligned_cols=18  Identities=17%  Similarity=0.222  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+-
T Consensus        38 ~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           38 IGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             ECSTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999998763

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.04  E-value=0.002  Score=45.04  Aligned_cols=18  Identities=17%  Similarity=0.141  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+-
T Consensus        47 ~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           47 IGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            699999999999998763

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.04  E-value=0.002  Score=44.82  Aligned_cols=18  Identities=28%  Similarity=0.377  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+-
T Consensus        32 iG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           32 VGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCcHHHHHHHHhCC
Confidence            699999999999998763

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.03  E-value=0.0019  Score=43.14  Aligned_cols=17  Identities=29%  Similarity=0.538  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++||||||+++.+.+
T Consensus        35 ~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           35 MGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998854

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.02  E-value=0.0019  Score=42.42  Aligned_cols=18  Identities=17%  Similarity=0.429  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||+++++..
T Consensus        12 ~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A           12 AAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHh
Confidence            499999999999999864

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.01  E-value=0.0019  Score=41.69  Aligned_cols=17  Identities=18%  Similarity=0.161  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++||||||+.+.|.+
T Consensus         7 ~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            7 EGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             ECSSSSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999864

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.01  E-value=0.0019  Score=43.00  Aligned_cols=18  Identities=28%  Similarity=0.302  Sum_probs=15.9

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus         7 ~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            7 TGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             ESCCSSCHHHHHHHHHHH
T ss_pred             ECCCCChHHHHHHHHHhh
Confidence            599999999999998753

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.00  E-value=0.0021  Score=44.74  Aligned_cols=18  Identities=33%  Similarity=0.460  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+-
T Consensus        35 ~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           35 MGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             ECSTTSSHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999999863

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.98  E-value=0.0021  Score=41.81  Aligned_cols=17  Identities=29%  Similarity=0.591  Sum_probs=15.5

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++||||||+.+.+..
T Consensus         8 ~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            8 IGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHHHHh
Confidence            49999999999999876

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.98  E-value=0.0021  Score=44.29  Aligned_cols=16  Identities=19%  Similarity=0.399  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|++|||||||++.+.
T Consensus        33 ~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           33 LGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999987

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.97  E-value=0.0022  Score=45.37  Aligned_cols=18  Identities=22%  Similarity=0.237  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+-
T Consensus        53 iG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           53 YGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCcHHHHHHHHhCC
Confidence            699999999999998753

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=95.96  E-value=0.0015  Score=44.56  Aligned_cols=16  Identities=13%  Similarity=0.299  Sum_probs=11.1

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|++|||||||++.+.
T Consensus        33 ~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           33 SSPSGCGKTTVANKLL   48 (231)
T ss_dssp             ECSCC----CHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999998

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.95  E-value=0.0023  Score=44.99  Aligned_cols=18  Identities=39%  Similarity=0.512  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+-
T Consensus        52 ~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           52 MGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             ECCTTSSHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999999874

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.95  E-value=0.0022  Score=44.83  Aligned_cols=18  Identities=22%  Similarity=0.266  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+-
T Consensus        52 ~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           52 VGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             ECSTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhcc
Confidence            699999999999998763

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.94  E-value=0.0023  Score=45.09  Aligned_cols=18  Identities=22%  Similarity=0.318  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+-
T Consensus        51 ~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           51 VGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             ECSTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            699999999999998763

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.94  E-value=0.0023  Score=41.21  Aligned_cols=15  Identities=27%  Similarity=0.399  Sum_probs=14.1

Q ss_pred             CCCCCCChhhhHhhh
Q psy1873           1 MGYRSVGKSSLSIQF   15 (157)
Q Consensus         1 vG~~~~GKssli~~~   15 (157)
                      .|++||||||+.+.+
T Consensus         7 ~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            7 TGMPGSGKSEFAKLL   21 (179)
T ss_dssp             ECCTTSCHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            499999999999998

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.92  E-value=0.0024  Score=44.53  Aligned_cols=18  Identities=28%  Similarity=0.331  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+-
T Consensus        37 ~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           37 LGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             ECCSSSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999998763

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.89  E-value=0.0025  Score=44.75  Aligned_cols=18  Identities=28%  Similarity=0.209  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+-
T Consensus        39 iG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           39 AGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             ECSTTSSHHHHHHHHTTS
T ss_pred             ECCCCCcHHHHHHHHhCC
Confidence            699999999999998753

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.86  E-value=0.0024  Score=44.72  Aligned_cols=17  Identities=29%  Similarity=0.419  Sum_probs=15.5

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||++.+.+
T Consensus        31 ~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           31 TGPTGSGKSTTIASMID   47 (261)
T ss_dssp             ECSTTCSHHHHHHHHHH
T ss_pred             ECCCCccHHHHHHHHHH
Confidence            59999999999999875

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=95.85  E-value=0.002  Score=43.66  Aligned_cols=18  Identities=22%  Similarity=0.220  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+...
T Consensus        31 ~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           31 FGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999763

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.85  E-value=0.002  Score=43.25  Aligned_cols=17  Identities=24%  Similarity=0.382  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||++.+.+
T Consensus        12 ~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A           12 AGGTASGKTTLAQALAR   28 (211)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998865

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.83  E-value=0.0026  Score=41.37  Aligned_cols=17  Identities=29%  Similarity=0.501  Sum_probs=14.8

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++||||||+++.+.+
T Consensus        14 ~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A           14 MGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            59999999999988753

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=95.78  E-value=0.0028  Score=42.29  Aligned_cols=17  Identities=29%  Similarity=0.456  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++||||||+.+.+.+
T Consensus        31 ~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           31 TGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=95.76  E-value=0.0031  Score=44.25  Aligned_cols=18  Identities=22%  Similarity=0.257  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+-
T Consensus        36 ~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           36 LGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999998764

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.76  E-value=0.0027  Score=45.50  Aligned_cols=17  Identities=29%  Similarity=0.464  Sum_probs=15.3

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|+|||||++.+.+
T Consensus       132 vGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          132 IGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             ECSSSSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHhh
Confidence            69999999999998874

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=95.72  E-value=0.0025  Score=46.73  Aligned_cols=18  Identities=22%  Similarity=0.261  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+.+-
T Consensus        36 lGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A           36 IGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             EESTTSSHHHHHHHHHTS
T ss_pred             ECCCCchHHHHHHHHhcC
Confidence            699999999999998763

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.72  E-value=0.0031  Score=46.14  Aligned_cols=18  Identities=17%  Similarity=0.220  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+.+-
T Consensus        47 lGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           47 LGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             ECSTTSSHHHHHHHHHTS
T ss_pred             ECCCCCcHHHHHHHHhCC
Confidence            699999999999998753

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=95.71  E-value=0.0032  Score=46.50  Aligned_cols=18  Identities=28%  Similarity=0.263  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+.+-
T Consensus        35 lGpsGsGKSTLLr~iaGl   52 (381)
T 3rlf_A           35 VGPSGCGKSTLLRMIAGL   52 (381)
T ss_dssp             ECCTTSSHHHHHHHHHTS
T ss_pred             EcCCCchHHHHHHHHHcC
Confidence            699999999999998763

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.71  E-value=0.003  Score=42.08  Aligned_cols=17  Identities=35%  Similarity=0.517  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++||||||+++.|.+
T Consensus        24 ~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           24 MGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998854

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=95.70  E-value=0.0032  Score=40.95  Aligned_cols=17  Identities=29%  Similarity=0.255  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++||||||+.+.|.+
T Consensus         9 ~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            9 NGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999865

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.69  E-value=0.0031  Score=45.35  Aligned_cols=17  Identities=29%  Similarity=0.317  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||++.+.+
T Consensus        96 ~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           96 AGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCchHHHHHHHHHh
Confidence            59999999999998764

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=95.69  E-value=0.0033  Score=46.12  Aligned_cols=18  Identities=28%  Similarity=0.314  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+.+-
T Consensus        35 lGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           35 LGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             ECCTTSSHHHHHHHHHTS
T ss_pred             ECCCCchHHHHHHHHhcC
Confidence            699999999999998763

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=95.68  E-value=0.0026  Score=40.62  Aligned_cols=18  Identities=33%  Similarity=0.392  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||+|++.+.+.
T Consensus        42 ~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           42 WGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             ESSSTTTTCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999998764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.68  E-value=0.0034  Score=46.13  Aligned_cols=17  Identities=29%  Similarity=0.237  Sum_probs=15.6

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||++.+.+
T Consensus        60 iGpnGaGKSTLlr~i~G   76 (366)
T 3tui_C           60 IGASGAGKSTLIRCVNL   76 (366)
T ss_dssp             ECCTTSSHHHHHHHHHT
T ss_pred             EcCCCchHHHHHHHHhc
Confidence            69999999999999875

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.67  E-value=0.0033  Score=46.08  Aligned_cols=18  Identities=17%  Similarity=0.287  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+.+-
T Consensus        35 lGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           35 LGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             ECSTTSSHHHHHHHHHTS
T ss_pred             EcCCCchHHHHHHHHHCC
Confidence            699999999999998753

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=95.66  E-value=0.0033  Score=41.88  Aligned_cols=17  Identities=35%  Similarity=0.673  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++||||||+...+.+
T Consensus        31 ~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           31 TGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            59999999999998863

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=95.61  E-value=0.0036  Score=46.10  Aligned_cols=18  Identities=17%  Similarity=0.174  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+.+-
T Consensus        35 lGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           35 LGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             ECSTTSSHHHHHHHHHTS
T ss_pred             ECCCCcHHHHHHHHHHcC
Confidence            699999999999998763

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=95.59  E-value=0.0038  Score=45.98  Aligned_cols=18  Identities=17%  Similarity=0.174  Sum_probs=15.9

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+.+-
T Consensus        43 lGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           43 LGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             ECCTTSSHHHHHHHHHTS
T ss_pred             ECCCCChHHHHHHHHHcC
Confidence            699999999999998753

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.50  E-value=0.0041  Score=42.08  Aligned_cols=17  Identities=24%  Similarity=0.368  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++||||||+++.+.+
T Consensus        11 ~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A           11 DGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998864

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=95.44  E-value=0.0037  Score=44.49  Aligned_cols=18  Identities=28%  Similarity=0.429  Sum_probs=15.9

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+-
T Consensus        70 ~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           70 AGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EESTTSSHHHHHHHHTTS
T ss_pred             ECCCCCcHHHHHHHHhcC
Confidence            599999999999998763

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.44  E-value=0.0046  Score=40.44  Aligned_cols=17  Identities=35%  Similarity=0.753  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||+.++..
T Consensus        10 ~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A           10 VGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999999875

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=95.43  E-value=0.0054  Score=40.20  Aligned_cols=17  Identities=29%  Similarity=0.356  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++||||||+++.|..
T Consensus         9 ~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            9 TGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998854

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.42  E-value=0.0045  Score=41.01  Aligned_cols=17  Identities=29%  Similarity=0.485  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|.+||||||+++.+.+
T Consensus         6 ~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            6 FGTVGAGKSTISAEISK   22 (205)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCccCHHHHHHHHHH
Confidence            49999999999998865

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.42  E-value=0.0044  Score=44.40  Aligned_cols=16  Identities=25%  Similarity=0.424  Sum_probs=14.8

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|++||||||+++.+.
T Consensus       108 vG~nGsGKTTll~~La  123 (304)
T 1rj9_A          108 VGVNGVGKTTTIAKLG  123 (304)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHH
Confidence            6999999999999986

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=95.41  E-value=0.0046  Score=42.74  Aligned_cols=18  Identities=28%  Similarity=0.392  Sum_probs=15.9

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||+|++.+.+.
T Consensus        55 ~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           55 VGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998753

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=95.41  E-value=0.0048  Score=41.17  Aligned_cols=17  Identities=29%  Similarity=0.452  Sum_probs=15.3

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++||||||+.+.|.+
T Consensus         8 ~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            8 TGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             ECSTTSCHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999865

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=95.39  E-value=0.0044  Score=43.62  Aligned_cols=17  Identities=24%  Similarity=0.329  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|+|||+|++.+.+
T Consensus        50 ~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           50 AGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             ESSTTSCHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            49999999999999875

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.38  E-value=0.0048  Score=40.37  Aligned_cols=17  Identities=18%  Similarity=0.390  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++||||||+.+.|.+
T Consensus        10 ~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A           10 LGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998863

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.37  E-value=0.0031  Score=46.01  Aligned_cols=18  Identities=17%  Similarity=0.139  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+.+-
T Consensus        32 lGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           32 LGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             ECCCTHHHHHHHHHHHTS
T ss_pred             ECCCCccHHHHHHHHHcC
Confidence            699999999999998753

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.37  E-value=0.0045  Score=40.58  Aligned_cols=17  Identities=29%  Similarity=0.456  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++||||||+++.|..
T Consensus         7 ~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            7 TGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EECTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.36  E-value=0.0059  Score=39.67  Aligned_cols=18  Identities=22%  Similarity=0.405  Sum_probs=15.7

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||+|++.+...
T Consensus        49 ~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           49 IGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999988754

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=95.35  E-value=0.0048  Score=44.12  Aligned_cols=17  Identities=18%  Similarity=0.249  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++||||||+++.+.+
T Consensus       106 vG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          106 VGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            69999999999999863

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=95.34  E-value=0.0049  Score=42.49  Aligned_cols=17  Identities=24%  Similarity=0.405  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+.|||||||++.+.+
T Consensus        31 ~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           31 SGGTASGKSTVCEKIME   47 (245)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998865

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.33  E-value=0.0017  Score=42.55  Aligned_cols=17  Identities=24%  Similarity=0.472  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||++.+.+
T Consensus         8 vG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            8 VGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             EESCHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            58999999999999875

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.30  E-value=0.0042  Score=45.51  Aligned_cols=18  Identities=33%  Similarity=0.338  Sum_probs=15.8

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus       176 vG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          176 LGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             ECCTTSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            699999999999998753

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.28  E-value=0.0042  Score=40.86  Aligned_cols=17  Identities=29%  Similarity=0.452  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|.+||||||+.+.+..
T Consensus        11 ~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A           11 TGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998854

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.28  E-value=0.0034  Score=45.04  Aligned_cols=17  Identities=24%  Similarity=0.343  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      ||++|+|||||++.+.+
T Consensus        86 vG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           86 VGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             ESSSCHHHHHHHHHHTT
T ss_pred             ECCCCchHHHHHHHHHc
Confidence            69999999999998875

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.27  E-value=0.005  Score=43.64  Aligned_cols=17  Identities=29%  Similarity=0.374  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++||||||++.++..
T Consensus        39 ~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           39 GGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             ECCTTSCTHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.26  E-value=0.0057  Score=41.29  Aligned_cols=17  Identities=29%  Similarity=0.595  Sum_probs=15.3

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|+|||||+..+..
T Consensus        29 ~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           29 TGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            59999999999999874

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.24  E-value=0.0059  Score=39.97  Aligned_cols=17  Identities=29%  Similarity=0.532  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++||||||+...+..
T Consensus        11 ~G~~GsGKst~a~~La~   27 (185)
T 3trf_A           11 IGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998853

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.21  E-value=0.0047  Score=45.79  Aligned_cols=17  Identities=35%  Similarity=0.563  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||++.+.+
T Consensus        53 lGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           53 LGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             EESTTSSHHHHHHHHHT
T ss_pred             ECCCCChHHHHHHHHhC
Confidence            69999999999999875

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.19  E-value=0.0056  Score=44.27  Aligned_cols=18  Identities=22%  Similarity=0.348  Sum_probs=15.8

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus        57 ~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           57 AGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             ESSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            499999999999998753

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.17  E-value=0.0058  Score=44.76  Aligned_cols=17  Identities=29%  Similarity=0.380  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+.|||||||++.+++
T Consensus       129 ~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          129 TGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            59999999999999875

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.14  E-value=0.0062  Score=43.97  Aligned_cols=16  Identities=38%  Similarity=0.362  Sum_probs=14.3

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|++|||||||++.+.
T Consensus        98 ~GpsGSGKSTl~~~L~  113 (321)
T 3tqc_A           98 AGSVAVGKSTTSRVLK  113 (321)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999998874

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=95.13  E-value=0.0064  Score=41.52  Aligned_cols=18  Identities=22%  Similarity=0.204  Sum_probs=15.7

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.||||||+++.+.+.
T Consensus        26 ~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           26 EGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             ECSTTSCHHHHHHTTGGG
T ss_pred             ECCCCCCHHHHHHHHHhc
Confidence            499999999999998764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.10  E-value=0.0065  Score=41.00  Aligned_cols=17  Identities=18%  Similarity=0.376  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+|||||+|...++.+
T Consensus         6 ~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            6 LGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.08  E-value=0.0031  Score=46.10  Aligned_cols=18  Identities=17%  Similarity=0.233  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+.+-
T Consensus        37 lGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           37 LGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             ECSCHHHHHHHHHHHHTS
T ss_pred             ECCCCCcHHHHHHHHhCC
Confidence            699999999999998763

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.08  E-value=0.0066  Score=40.78  Aligned_cols=17  Identities=29%  Similarity=0.560  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++||||||+.+.|..
T Consensus         6 ~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            6 MGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999853

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.04  E-value=0.0083  Score=39.96  Aligned_cols=17  Identities=35%  Similarity=0.384  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++||||||+++.|..
T Consensus        10 ~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A           10 EGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            49999999999999864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=95.03  E-value=0.0056  Score=40.75  Aligned_cols=17  Identities=29%  Similarity=0.468  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++||||||+.+.+.+
T Consensus         7 ~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            7 TGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHH
Confidence            49999999999998864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.03  E-value=0.0075  Score=39.18  Aligned_cols=17  Identities=29%  Similarity=0.599  Sum_probs=14.7

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++||||||+.+.+..
T Consensus        10 ~G~~GsGKsTla~~La~   26 (175)
T 1via_A           10 IGFMGSGKSTLARALAK   26 (175)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            49999999999988753

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.01  E-value=0.0071  Score=42.43  Aligned_cols=18  Identities=28%  Similarity=0.392  Sum_probs=15.9

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||+|++.+.+.
T Consensus        79 ~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           79 VGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCcChHHHHHHHHHHH
Confidence            599999999999998753

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.01  E-value=0.0071  Score=40.67  Aligned_cols=17  Identities=29%  Similarity=0.528  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++||||||+.+.|..
T Consensus         6 ~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            6 MGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999853

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=94.99  E-value=0.0075  Score=39.59  Aligned_cols=17  Identities=24%  Similarity=0.452  Sum_probs=14.8

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|.+||||||+.+.|..
T Consensus         9 ~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            9 LGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988754

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=94.99  E-value=0.0061  Score=40.73  Aligned_cols=18  Identities=22%  Similarity=0.370  Sum_probs=15.6

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++||||||+++.+.+.
T Consensus        27 ~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           27 SGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             EESTTSSHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            489999999999998753

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=94.98  E-value=0.0069  Score=44.58  Aligned_cols=17  Identities=29%  Similarity=0.419  Sum_probs=15.6

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++||||||+++.+.+
T Consensus       142 vG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          142 TGPTGSGKSTTIASMID  158 (372)
T ss_dssp             ECSSSSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            59999999999999875

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=94.97  E-value=0.0063  Score=39.72  Aligned_cols=17  Identities=24%  Similarity=0.317  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+.|+|||||+..+..
T Consensus        32 ~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           32 VGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998753

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=94.93  E-value=0.0061  Score=43.60  Aligned_cols=17  Identities=29%  Similarity=0.317  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||++.+.+
T Consensus        86 ~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           86 AGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998865

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=94.92  E-value=0.0083  Score=40.86  Aligned_cols=18  Identities=17%  Similarity=0.231  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||+..+...
T Consensus        30 ~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           30 FGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            599999999999999863

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=94.91  E-value=0.0069  Score=43.84  Aligned_cols=18  Identities=17%  Similarity=0.189  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+-
T Consensus       177 ~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          177 CGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             EESTTSCHHHHHHHGGGG
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999998864

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=94.91  E-value=0.0079  Score=41.77  Aligned_cols=17  Identities=29%  Similarity=0.522  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||...+.+
T Consensus         7 ~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            7 YGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            59999999999998854

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=94.90  E-value=0.0083  Score=40.20  Aligned_cols=17  Identities=29%  Similarity=0.305  Sum_probs=15.5

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|+|||||+..+..
T Consensus        26 ~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           26 YGPYASGKTTLALQTGL   42 (220)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999976

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=94.90  E-value=0.0084  Score=39.09  Aligned_cols=17  Identities=29%  Similarity=0.518  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|.+||||||+.+.+..
T Consensus        17 ~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           17 TGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHH
Confidence            49999999999998863

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=94.89  E-value=0.008  Score=40.91  Aligned_cols=17  Identities=24%  Similarity=0.378  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+|||||+|...++.+
T Consensus        35 lGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           35 LGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             ECCTTCCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988864

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=94.88  E-value=0.0065  Score=40.54  Aligned_cols=17  Identities=29%  Similarity=0.431  Sum_probs=14.8

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++||||||+++.+.+
T Consensus        28 ~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           28 DGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999998864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=94.88  E-value=0.0084  Score=39.34  Aligned_cols=17  Identities=24%  Similarity=0.567  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|.+||||||+++.+..
T Consensus        19 ~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           19 TGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            49999999999998864

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=94.86  E-value=0.057  Score=39.54  Aligned_cols=16  Identities=38%  Similarity=0.310  Sum_probs=14.6

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|+.|+|||||++.++
T Consensus        29 ~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           29 EGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999876

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=94.84  E-value=0.0082  Score=44.00  Aligned_cols=17  Identities=18%  Similarity=0.249  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      ||++||||||++..+.+
T Consensus       163 vG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          163 VGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             EcCCCChHHHHHHHHHh
Confidence            69999999999998864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=94.83  E-value=0.0068  Score=44.43  Aligned_cols=18  Identities=22%  Similarity=0.357  Sum_probs=15.9

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+-
T Consensus       181 vG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          181 AGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             EESSSSCHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHhc
Confidence            599999999999999763

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=94.78  E-value=0.025  Score=42.73  Aligned_cols=56  Identities=21%  Similarity=0.180  Sum_probs=32.8

Q ss_pred             CCCCCCChhhhHhhhhc------------------cccc---ccccCCcc-ceEEEE--EE-ECCeEEEEEEEeCCCCcc
Q psy1873           1 MGYRSVGKSSLSIQFVD------------------GQFV---DSYDPTIE-NTFVKT--TR-MNNQDYDLKLVDTAGQDE   55 (157)
Q Consensus         1 vG~~~~GKssli~~~~~------------------~~~~---~~~~~t~~-~~~~~~--~~-~~~~~~~~~i~D~~g~~~   55 (157)
                      +|+.++|||+|+|.+++                  ..|.   .....|.| ..+...  +. .++....+.+.||.|...
T Consensus        73 ~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTEG~~d  152 (457)
T 4ido_A           73 AGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFD  152 (457)
T ss_dssp             EEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEECCBTC
T ss_pred             ECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEeccCCCC
Confidence            59999999999996542                  1221   11223334 222111  11 256677899999999644


Q ss_pred             C
Q psy1873          56 Y   56 (157)
Q Consensus        56 ~   56 (157)
                      .
T Consensus       153 ~  153 (457)
T 4ido_A          153 S  153 (457)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=94.76  E-value=0.011  Score=39.18  Aligned_cols=18  Identities=17%  Similarity=0.438  Sum_probs=15.6

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++||||||+++.|.+.
T Consensus        10 ~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A           10 EGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             ECCTTSSHHHHHHHHHHT
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            499999999999998753

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=94.75  E-value=0.011  Score=40.06  Aligned_cols=17  Identities=18%  Similarity=0.147  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|+|||+|+..+..
T Consensus        58 ~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           58 WGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999875

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=94.73  E-value=0.0096  Score=39.57  Aligned_cols=17  Identities=18%  Similarity=0.520  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|.+||||||+.+.|..
T Consensus        26 ~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           26 LGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998864

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=94.73  E-value=0.0098  Score=41.24  Aligned_cols=16  Identities=25%  Similarity=0.343  Sum_probs=14.8

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|++||||||+++.+.
T Consensus        33 ~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           33 DGPSGAGKGTLCKALA   48 (252)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999987

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=94.73  E-value=0.087  Score=34.75  Aligned_cols=88  Identities=15%  Similarity=0.047  Sum_probs=54.8

Q ss_pred             EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN  121 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n  121 (157)
                      .+.+.++|+++..  .......+..+|.++++...+...  ..+...+..+......            .+..++.+|.|
T Consensus        75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~------------~~~~~~~vv~N  138 (206)
T 4dzz_A           75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAY------------SRKVEARFLIT  138 (206)
T ss_dssp             TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCG------------GGCCEEEEEEC
T ss_pred             CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHh------------CCCCcEEEEEe
Confidence            3678899999765  334455667789999998766443  5665555555433211            11267899999


Q ss_pred             CCCCCCCceecHHHHHHHHHHhCCcEE
Q psy1873         122 KKDLHMERMISYDEGKRLAESWKAGFV  148 (157)
Q Consensus       122 K~Dl~~~~~~~~~~~~~~~~~~~~~~~  148 (157)
                      +.|...  ... .+..++.+.++.+++
T Consensus       139 ~~~~~~--~~~-~~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          139 RKIEMA--TML-NVLKESIKDTGVKAF  162 (206)
T ss_dssp             SBCTTE--EEE-HHHHHHHHHHTCCBC
T ss_pred             ccCCCc--hHH-HHHHHHHHHcCCcee
Confidence            999532  222 445566666676544

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=94.72  E-value=0.011  Score=38.75  Aligned_cols=17  Identities=18%  Similarity=0.360  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|.+||||||+.+.|.+
T Consensus         6 ~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            6 EGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999865

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=94.72  E-value=0.0075  Score=39.06  Aligned_cols=18  Identities=22%  Similarity=0.320  Sum_probs=15.6

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||+|++.+...
T Consensus        49 ~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           49 LGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             ESCGGGCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999988754

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=94.72  E-value=0.0096  Score=40.19  Aligned_cols=17  Identities=18%  Similarity=0.356  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|.+||||||+.+.|..
T Consensus        10 ~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A           10 IGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998854

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=94.71  E-value=0.0096  Score=39.10  Aligned_cols=18  Identities=22%  Similarity=0.322  Sum_probs=15.5

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|.+||||||+.+.|...
T Consensus        16 ~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           16 TGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            499999999999988654

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=94.69  E-value=0.0028  Score=42.45  Aligned_cols=17  Identities=24%  Similarity=0.349  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++||||||+++.|..
T Consensus         6 ~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            6 EGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            48999999999999864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=94.65  E-value=0.0098  Score=45.43  Aligned_cols=17  Identities=24%  Similarity=0.388  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      ||++|||||||++.+.+
T Consensus       299 VGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          299 VGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCcccHHHHHHHHHH
Confidence            69999999999998863

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=94.64  E-value=0.01  Score=41.06  Aligned_cols=17  Identities=24%  Similarity=0.350  Sum_probs=15.3

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|+|||+|++.+.+
T Consensus        51 ~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           51 VGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHH
Confidence            49999999999999875

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=94.64  E-value=0.0082  Score=39.52  Aligned_cols=17  Identities=24%  Similarity=0.335  Sum_probs=14.8

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++||||||+.+.|..
T Consensus        15 ~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           15 VGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998853

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=94.64  E-value=0.011  Score=37.59  Aligned_cols=16  Identities=38%  Similarity=0.459  Sum_probs=14.3

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|+.|+|||+|+..+.
T Consensus        29 ~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           29 IGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999998875

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=94.63  E-value=0.01  Score=42.17  Aligned_cols=16  Identities=44%  Similarity=0.412  Sum_probs=14.1

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|++|||||||++.+.
T Consensus        37 ~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           37 SGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999998775

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=94.62  E-value=0.0083  Score=40.75  Aligned_cols=16  Identities=31%  Similarity=0.493  Sum_probs=14.4

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|++||||||+.+.|.
T Consensus        13 ~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A           13 MGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999999885

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=94.62  E-value=0.011  Score=38.57  Aligned_cols=17  Identities=24%  Similarity=0.554  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|.+||||||+.+.|.+
T Consensus        11 ~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A           11 TGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998865

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=94.60  E-value=0.0082  Score=40.59  Aligned_cols=17  Identities=18%  Similarity=0.147  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++||||||+.+.|..
T Consensus        11 ~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A           11 SGAPASGKGTQCELIKT   27 (222)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998853

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=94.60  E-value=0.011  Score=40.82  Aligned_cols=17  Identities=24%  Similarity=0.438  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++||||||+..+|.+
T Consensus        35 ~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           35 LGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=94.58  E-value=0.0071  Score=43.48  Aligned_cols=18  Identities=22%  Similarity=0.503  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+.
T Consensus        10 ~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A           10 TGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EESSSSSCHHHHHHHHHS
T ss_pred             EecCCCCHHHHHHHHHhh
Confidence            489999999999999864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=94.58  E-value=0.011  Score=40.18  Aligned_cols=17  Identities=24%  Similarity=0.276  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++||||||+++.|..
T Consensus         6 ~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            6 FGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998854

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=94.57  E-value=0.0059  Score=41.88  Aligned_cols=18  Identities=33%  Similarity=0.422  Sum_probs=15.7

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||+..+...
T Consensus        33 ~GpnGsGKSTll~~i~g~   50 (227)
T 1qhl_A           33 SGGNGAGKSTTMAAFVTA   50 (227)
T ss_dssp             HSCCSHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcc
Confidence            599999999999998653

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=94.57  E-value=0.0084  Score=42.43  Aligned_cols=18  Identities=22%  Similarity=0.093  Sum_probs=15.6

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||+..+...
T Consensus        41 ~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           41 TSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHH
Confidence            599999999999988653

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=94.56  E-value=0.01  Score=44.39  Aligned_cols=18  Identities=22%  Similarity=0.150  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+++.
T Consensus       173 ~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          173 TGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             ECSTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            599999999999998763

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=94.55  E-value=0.0089  Score=39.45  Aligned_cols=17  Identities=24%  Similarity=0.407  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++||||||+.+.|..
T Consensus        18 ~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           18 IGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999988864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=94.53  E-value=0.0071  Score=41.94  Aligned_cols=17  Identities=18%  Similarity=0.169  Sum_probs=14.8

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++||||||+.+.+..
T Consensus        38 ~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           38 GGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             ESCGGGTTHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=94.51  E-value=0.013  Score=38.80  Aligned_cols=18  Identities=28%  Similarity=0.312  Sum_probs=15.5

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||+|+..+...
T Consensus        60 ~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           60 HGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            399999999999988753

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=94.48  E-value=0.013  Score=39.34  Aligned_cols=17  Identities=35%  Similarity=0.546  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|+|||+|++.+.+
T Consensus        51 ~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           51 SGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            39999999999999865

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=94.46  E-value=0.012  Score=40.89  Aligned_cols=17  Identities=35%  Similarity=0.546  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|.+||||||+.+.+..
T Consensus        10 ~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A           10 TGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            49999999999998864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=94.44  E-value=0.015  Score=37.44  Aligned_cols=17  Identities=18%  Similarity=0.444  Sum_probs=14.8

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|.+||||||+.+.|..
T Consensus         8 ~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            8 VGARGCGMTTVGRELAR   24 (173)
T ss_dssp             ESCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988854

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=94.44  E-value=0.013  Score=38.33  Aligned_cols=17  Identities=24%  Similarity=0.493  Sum_probs=14.8

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|.+||||||+...|..
T Consensus         8 ~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            8 VGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988854

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.43  E-value=0.014  Score=38.74  Aligned_cols=18  Identities=22%  Similarity=0.362  Sum_probs=15.5

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||+++..+...
T Consensus        44 ~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           44 SGPPGTGKTATAIALARD   61 (226)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            399999999999988753

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=94.42  E-value=0.011  Score=39.37  Aligned_cols=17  Identities=35%  Similarity=0.425  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|.+||||||+.+.|.+
T Consensus        16 ~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           16 EGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            48999999999999864

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=94.39  E-value=0.0096  Score=45.11  Aligned_cols=18  Identities=33%  Similarity=0.372  Sum_probs=15.9

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|||||||++.+++-
T Consensus       144 vGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          144 VGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             EESTTSSHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHhCc
Confidence            699999999999998753

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=94.36  E-value=0.015  Score=39.74  Aligned_cols=17  Identities=18%  Similarity=0.245  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++||||||+++++.+
T Consensus        32 ~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           32 EGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            49999999999999865

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=94.35  E-value=0.01  Score=39.92  Aligned_cols=17  Identities=18%  Similarity=0.343  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++||||||+.+.|..
T Consensus         6 ~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            6 LGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.34  E-value=0.013  Score=45.19  Aligned_cols=18  Identities=22%  Similarity=0.396  Sum_probs=16.3

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      ||+.|+|||||++.+.+.
T Consensus        31 iGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           31 LGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCcHHHHHHHHhcC
Confidence            699999999999998864

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=94.34  E-value=0.011  Score=45.31  Aligned_cols=18  Identities=17%  Similarity=0.117  Sum_probs=15.9

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.||||||+++.+++-
T Consensus       266 ~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          266 VGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             EESTTSSHHHHHHHHGGG
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            599999999999999763

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=94.34  E-value=0.016  Score=37.21  Aligned_cols=17  Identities=24%  Similarity=0.483  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|.+||||||+.+.|..
T Consensus         6 ~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            6 IGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             ESCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=94.33  E-value=0.015  Score=38.53  Aligned_cols=17  Identities=24%  Similarity=0.391  Sum_probs=14.8

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|.+||||||+.+.|..
T Consensus        21 ~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           21 LGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988863

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=94.33  E-value=0.012  Score=38.27  Aligned_cols=17  Identities=24%  Similarity=0.262  Sum_probs=10.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|.+||||||+.+.|..
T Consensus        11 ~G~~GsGKST~a~~La~   27 (183)
T 2vli_A           11 NGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             ECCC----CHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999863

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=94.26  E-value=0.014  Score=44.54  Aligned_cols=17  Identities=35%  Similarity=0.421  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|+|||||++.+.+
T Consensus        35 iG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           35 SGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHhc
Confidence            69999999999998864

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=94.25  E-value=0.011  Score=43.12  Aligned_cols=18  Identities=33%  Similarity=0.397  Sum_probs=16.3

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||++.+.+.
T Consensus        77 iG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           77 FAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.24  E-value=0.014  Score=45.01  Aligned_cols=18  Identities=22%  Similarity=0.266  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+.
T Consensus        53 vG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           53 VGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             ECCTTSSHHHHHHHHHTS
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999998764

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=94.24  E-value=0.011  Score=39.91  Aligned_cols=16  Identities=31%  Similarity=0.615  Sum_probs=14.4

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |+||+|||+++..+.+
T Consensus        65 GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           65 GPANTGKSYFGMSFIH   80 (212)
T ss_dssp             SCGGGCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999988865

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=94.23  E-value=0.014  Score=39.14  Aligned_cols=17  Identities=29%  Similarity=0.585  Sum_probs=14.8

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|.+|+||||+++.+.+
T Consensus        31 ~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           31 TGLSASGKSTLAVELEH   47 (211)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998754

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=94.23  E-value=0.013  Score=39.09  Aligned_cols=17  Identities=35%  Similarity=0.479  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|.+||||||+++.|..
T Consensus        15 ~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A           15 EGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999999864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=94.20  E-value=0.014  Score=38.23  Aligned_cols=17  Identities=24%  Similarity=0.356  Sum_probs=14.8

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|.+||||||+.+.|..
T Consensus        12 ~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A           12 LGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999998854

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=94.15  E-value=0.017  Score=40.49  Aligned_cols=17  Identities=24%  Similarity=0.296  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|+|||+|++.+..
T Consensus        57 ~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           57 YGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             ESSSSSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            39999999999999865

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.10  E-value=0.016  Score=45.44  Aligned_cols=18  Identities=22%  Similarity=0.324  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      ||++|+|||||++.+.+-
T Consensus       109 vGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          109 VGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             ECCTTSSHHHHHHHHHTS
T ss_pred             ECCCCChHHHHHHHHhcC
Confidence            699999999999998763

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=94.07  E-value=0.015  Score=42.85  Aligned_cols=17  Identities=24%  Similarity=0.444  Sum_probs=15.3

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|+|||||++.+.+
T Consensus       175 ~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          175 KGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            59999999999998874

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=94.06  E-value=0.016  Score=40.98  Aligned_cols=17  Identities=29%  Similarity=0.591  Sum_probs=15.3

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|.+||||||+.+++..
T Consensus         8 ~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            8 IGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999875

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=94.04  E-value=0.018  Score=41.21  Aligned_cols=17  Identities=24%  Similarity=0.206  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|+|||+|++.+.+
T Consensus        43 ~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           43 YGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             ECSSSSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            39999999999999875

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=94.02  E-value=0.018  Score=40.61  Aligned_cols=17  Identities=24%  Similarity=0.282  Sum_probs=15.3

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|+|||++++.+.+
T Consensus        60 ~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           60 FGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             ESSSSSCHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHH
Confidence            49999999999999875

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=94.02  E-value=0.015  Score=41.20  Aligned_cols=16  Identities=25%  Similarity=0.158  Sum_probs=14.8

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |+||+|||+|++.+..
T Consensus        43 GppGtGKT~la~aiA~   58 (293)
T 3t15_A           43 GGKGQGKSFQCELVFR   58 (293)
T ss_dssp             ECTTSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999999875

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.00  E-value=0.019  Score=39.80  Aligned_cols=17  Identities=24%  Similarity=0.333  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|+|||+|++.+..
T Consensus        50 ~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           50 VGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             BCSSCSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            49999999999999865

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=93.98  E-value=0.02  Score=39.47  Aligned_cols=17  Identities=24%  Similarity=0.354  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|+|||++++.+..
T Consensus        45 ~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           45 LGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             ESCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            39999999999999875

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=93.95  E-value=0.018  Score=44.83  Aligned_cols=17  Identities=29%  Similarity=0.497  Sum_probs=15.6

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|+|||||++.+.+
T Consensus       375 vG~sGsGKSTll~~l~g  391 (582)
T 3b5x_A          375 VGRSGSGKSTIANLFTR  391 (582)
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            69999999999999875

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=93.92  E-value=0.018  Score=39.27  Aligned_cols=17  Identities=18%  Similarity=0.366  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|.+||||||+.+.|..
T Consensus        22 ~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           22 LGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998854

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=93.91  E-value=0.016  Score=45.15  Aligned_cols=17  Identities=29%  Similarity=0.298  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|+|||||++.+.+
T Consensus       373 vG~sGsGKSTll~~l~g  389 (578)
T 4a82_A          373 VGMSGGGKSTLINLIPR  389 (578)
T ss_dssp             ECSTTSSHHHHHTTTTT
T ss_pred             ECCCCChHHHHHHHHhc
Confidence            69999999999998875

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=93.91  E-value=0.014  Score=43.92  Aligned_cols=18  Identities=28%  Similarity=0.123  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+.+.
T Consensus       163 vG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          163 FAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcc
Confidence            599999999999998764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=93.89  E-value=0.018  Score=40.05  Aligned_cols=17  Identities=18%  Similarity=0.356  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|+||||+.+.+.+
T Consensus        54 ~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           54 VGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988853

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=93.89  E-value=0.015  Score=39.57  Aligned_cols=17  Identities=35%  Similarity=0.370  Sum_probs=14.5

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|+|||+|+.+++.
T Consensus        29 ~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           29 SGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999888753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=93.87  E-value=0.015  Score=39.26  Aligned_cols=17  Identities=18%  Similarity=0.200  Sum_probs=14.8

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|.+||||||+.+.|..
T Consensus        11 ~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A           11 IGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998854

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=93.85  E-value=0.015  Score=40.77  Aligned_cols=17  Identities=29%  Similarity=0.421  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|+|||||+..+..
T Consensus        36 ~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           36 VSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            58999999999999875

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=93.83  E-value=0.024  Score=36.44  Aligned_cols=17  Identities=35%  Similarity=0.505  Sum_probs=14.7

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|.+||||||+.+.|..
T Consensus        13 ~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A           13 IGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             ESCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998853

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=93.80  E-value=0.016  Score=45.14  Aligned_cols=17  Identities=24%  Similarity=0.399  Sum_probs=15.5

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|+|||||++.+.+
T Consensus       375 vG~sGsGKSTLl~~l~g  391 (582)
T 3b60_A          375 VGRSGSGKSTIASLITR  391 (582)
T ss_dssp             EECTTSSHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHhh
Confidence            69999999999999875

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=93.80  E-value=0.66  Score=31.32  Aligned_cols=86  Identities=14%  Similarity=0.084  Sum_probs=55.1

Q ss_pred             EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN  121 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n  121 (157)
                      .+.+.|+|+++..  .......+..+|.+|++... +..++..+...+..+......              ...+.+|.|
T Consensus       118 ~yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~-~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~v~N  180 (245)
T 3ea0_A          118 FYDYIIVDFGASI--DHVGVWVLEHLDELCIVTTP-SLQSLRRAGQLLKLCKEFEKP--------------ISRIEIILN  180 (245)
T ss_dssp             HCSEEEEEEESSC--CTTHHHHGGGCSEEEEEECS-SHHHHHHHHHHHHHHHTCSSC--------------CSCEEEEEE
T ss_pred             hCCEEEEeCCCCC--chHHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhCCC--------------ccceEEEEe
Confidence            4678899998754  23455567789999998775 467777777776666433211              156889999


Q ss_pred             CCCCCCCceecHHHHHHHHHHhCCcEEE
Q psy1873         122 KKDLHMERMISYDEGKRLAESWKAGFVE  149 (157)
Q Consensus       122 K~Dl~~~~~~~~~~~~~~~~~~~~~~~e  149 (157)
                      +.+...  ....   +.+.+.++.+++.
T Consensus       181 ~~~~~~--~~~~---~~~~~~~~~~v~~  203 (245)
T 3ea0_A          181 RADTNS--RITS---DEIEKVIGRPISK  203 (245)
T ss_dssp             STTSCT--TSCH---HHHHHHHTSCEEE
T ss_pred             cCCCCC--CCCH---HHHHHHhCCCeEE
Confidence            998533  2222   3444556766554

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=93.77  E-value=0.02  Score=44.87  Aligned_cols=18  Identities=17%  Similarity=0.254  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+.
T Consensus       123 iG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A          123 VGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCChHHHHHHHHhCC
Confidence            699999999999998764

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=93.77  E-value=0.019  Score=44.91  Aligned_cols=17  Identities=18%  Similarity=0.350  Sum_probs=15.5

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|+|||||++.+.+
T Consensus       387 vG~sGsGKSTll~~l~g  403 (598)
T 3qf4_B          387 VGPTGSGKTTIVNLLMR  403 (598)
T ss_dssp             ECCTTSSTTHHHHHHTT
T ss_pred             ECCCCCcHHHHHHHHhc
Confidence            69999999999998875

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.75  E-value=0.021  Score=41.18  Aligned_cols=17  Identities=18%  Similarity=0.434  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|+||||+++.+.+
T Consensus        42 ~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           42 YGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             ECSTTSSHHHHHHTHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999876

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=93.70  E-value=0.025  Score=37.98  Aligned_cols=17  Identities=35%  Similarity=0.475  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|.+||||||+++.|.+
T Consensus        10 ~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A           10 TGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=93.67  E-value=0.022  Score=44.04  Aligned_cols=18  Identities=22%  Similarity=0.490  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+-
T Consensus       300 ~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          300 LGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999999864

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=93.66  E-value=0.017  Score=42.09  Aligned_cols=18  Identities=22%  Similarity=0.220  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||||+..++..
T Consensus       137 ~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          137 FGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999998764

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=93.65  E-value=0.022  Score=39.13  Aligned_cols=16  Identities=38%  Similarity=0.360  Sum_probs=14.5

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      .|++||||||+.+.+.
T Consensus        15 ~G~~GsGKsTla~~la   30 (233)
T 3r20_A           15 DGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999999885

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.64  E-value=0.024  Score=40.94  Aligned_cols=18  Identities=22%  Similarity=0.318  Sum_probs=15.8

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+||||+++.+.+.
T Consensus        52 ~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           52 YGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             ECSSSSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998764

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=93.54  E-value=0.025  Score=40.15  Aligned_cols=17  Identities=24%  Similarity=0.356  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|+|||+|++.+.+
T Consensus        55 ~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           55 YGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             ECSSSSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHH
Confidence            49999999999999875

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=93.52  E-value=0.018  Score=38.00  Aligned_cols=18  Identities=22%  Similarity=0.226  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|.+||||||+.+.|.+.
T Consensus        14 ~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A           14 TGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             EECTTSCHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHC
Confidence            489999999999988653

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=93.45  E-value=0.026  Score=42.12  Aligned_cols=17  Identities=24%  Similarity=0.495  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|.+||||||+.+++..
T Consensus       264 ~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          264 VGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             ESCTTSSHHHHHHHHTG
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999875

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=93.45  E-value=0.028  Score=39.62  Aligned_cols=17  Identities=24%  Similarity=0.524  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|+|||++++.+..
T Consensus        56 ~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           56 IGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999865

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=93.44  E-value=0.03  Score=35.21  Aligned_cols=18  Identities=11%  Similarity=0.028  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||++++.+...
T Consensus        30 ~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           30 YGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             ESSTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            499999999999988653

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=93.41  E-value=0.027  Score=40.90  Aligned_cols=18  Identities=17%  Similarity=0.344  Sum_probs=15.7

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||++++.+.+.
T Consensus        50 ~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           50 YGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CBCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998753

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=93.40  E-value=0.028  Score=40.88  Aligned_cols=18  Identities=17%  Similarity=0.202  Sum_probs=15.7

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||+|++.+.+.
T Consensus        50 ~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           50 LGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998754

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=93.40  E-value=0.023  Score=41.22  Aligned_cols=18  Identities=17%  Similarity=0.305  Sum_probs=15.7

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||+|++.+.+.
T Consensus        51 ~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           51 YGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998753

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=93.39  E-value=0.022  Score=44.40  Aligned_cols=17  Identities=29%  Similarity=0.325  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|+|||||++.+.+
T Consensus       375 vG~sGsGKSTll~~l~g  391 (587)
T 3qf4_A          375 LGETGSGKSTLMNLIPR  391 (587)
T ss_dssp             ECSSSSSHHHHHHTTTT
T ss_pred             ECCCCCCHHHHHHHHhC
Confidence            69999999999998875

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=93.37  E-value=0.029  Score=39.08  Aligned_cols=18  Identities=22%  Similarity=0.383  Sum_probs=15.7

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||+++..+...
T Consensus        70 ~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           70 EGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            399999999999998763

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=93.34  E-value=0.029  Score=38.93  Aligned_cols=16  Identities=25%  Similarity=0.314  Sum_probs=14.6

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |.+||||||+++.|.+
T Consensus        31 G~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           31 GNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             CSTTSSHHHHHTTTGG
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8999999999998865

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=93.30  E-value=0.03  Score=40.03  Aligned_cols=18  Identities=50%  Similarity=0.746  Sum_probs=15.8

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||+|++.+.+.
T Consensus        37 ~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           37 LGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCcCCHHHHHHHHHHH
Confidence            399999999999998754

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.25  E-value=0.03  Score=40.24  Aligned_cols=18  Identities=22%  Similarity=0.326  Sum_probs=15.7

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||++++.+.+.
T Consensus        64 ~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           64 YGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            399999999999998754

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=93.24  E-value=0.033  Score=37.45  Aligned_cols=16  Identities=19%  Similarity=0.302  Sum_probs=13.9

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |..||||||+++.+.+
T Consensus         9 G~dGsGKsTq~~~L~~   24 (205)
T 4hlc_A            9 GPEGSGKTTVINEVYH   24 (205)
T ss_dssp             CCTTSCHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHH
Confidence            8999999999988754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=93.21  E-value=0.028  Score=44.05  Aligned_cols=18  Identities=17%  Similarity=0.344  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+.
T Consensus       388 ~G~NGsGKSTLlk~l~Gl  405 (607)
T 3bk7_A          388 VGPNGIGKTTFVKMLAGV  405 (607)
T ss_dssp             ECCTTSSHHHHHHHHHTS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            699999999999999864

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=93.18  E-value=0.03  Score=37.46  Aligned_cols=16  Identities=38%  Similarity=0.459  Sum_probs=14.2

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|+.|+|||||+..+.
T Consensus        29 ~G~NgsGKStil~ai~   44 (203)
T 3qks_A           29 IGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            5999999999998874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=93.17  E-value=0.029  Score=43.33  Aligned_cols=18  Identities=17%  Similarity=0.344  Sum_probs=16.3

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+.
T Consensus       318 ~G~NGsGKSTLlk~l~Gl  335 (538)
T 1yqt_A          318 VGPNGIGKTTFVKMLAGV  335 (538)
T ss_dssp             ECCTTSSHHHHHHHHHTS
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999999864

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.16  E-value=0.031  Score=41.92  Aligned_cols=16  Identities=25%  Similarity=0.335  Sum_probs=14.8

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      ||||+|||+|+..+.+
T Consensus       213 GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          213 GPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             SCTTTTHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999999874

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=93.09  E-value=0.028  Score=39.76  Aligned_cols=18  Identities=28%  Similarity=0.466  Sum_probs=15.6

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||++++.+.+.
T Consensus        53 ~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           53 LGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             ESCSSSSHHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHHH
Confidence            499999999999988753

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=93.09  E-value=0.03  Score=38.43  Aligned_cols=17  Identities=18%  Similarity=0.288  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+|||||||+..++.+
T Consensus        14 ~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A           14 LGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998854

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=93.08  E-value=0.03  Score=40.13  Aligned_cols=85  Identities=14%  Similarity=-0.008  Sum_probs=45.9

Q ss_pred             EEEEEEeCCCCccCcC-ch------hhh-----ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCC
Q psy1873          43 YDLKLVDTAGQDEYSI-FP------AQY-----SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSC  110 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~-~~------~~~-----~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  110 (157)
                      +.+.+.|++|...... +.      ...     -..++.++++.|.+..  .+.+. ....+.+..              
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~-~a~~~~~~~--------------  249 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLV-QAKIFKEAV--------------  249 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHH-HHHHHHHHS--------------
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHH-HHHHHHhcC--------------
Confidence            4578999999633221 10      001     1246888899887633  22222 222332221              


Q ss_pred             CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873         111 VSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus       111 ~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                         ...-+|.||.|...  ..  ..+.......++|+..++
T Consensus       250 ---~i~gvVlTk~D~~~--~g--G~~l~~~~~~~~Pi~~i~  283 (306)
T 1vma_A          250 ---NVTGIILTKLDGTA--KG--GITLAIARELGIPIKFIG  283 (306)
T ss_dssp             ---CCCEEEEECGGGCS--CT--THHHHHHHHHCCCEEEEE
T ss_pred             ---CCCEEEEeCCCCcc--ch--HHHHHHHHHHCCCEEEEe
Confidence               22446679999532  22  236677778888766554

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=93.08  E-value=0.028  Score=39.78  Aligned_cols=17  Identities=18%  Similarity=0.509  Sum_probs=14.5

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|+|||++++.+.+
T Consensus        73 ~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           73 TGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999987654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.03  E-value=0.034  Score=41.78  Aligned_cols=16  Identities=25%  Similarity=0.287  Sum_probs=14.8

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      ||||+|||+|+..+.+
T Consensus       222 GPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          222 GPPGTGKTLLARACAA  237 (434)
T ss_dssp             SCTTSSHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHH
Confidence            9999999999999875

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=93.02  E-value=0.024  Score=40.39  Aligned_cols=86  Identities=19%  Similarity=0.134  Sum_probs=45.9

Q ss_pred             EEEEEEEeCCCCccCcC--chh--hhcc--CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc
Q psy1873          42 DYDLKLVDTAGQDEYSI--FPA--QYSM--DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP  115 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~--~~~--~~~~--~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p  115 (157)
                      .+.+.|.||+|......  +..  ..+.  ..+.++++.|.+..  .+.+.++...+.    ..              ..
T Consensus       182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~----~l--------------~~  241 (296)
T 2px0_A          182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS----SV--------------PV  241 (296)
T ss_dssp             GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS----SS--------------CC
T ss_pred             CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh----cC--------------CC
Confidence            35678999999765432  111  1222  35677888876632  233333322221    10              12


Q ss_pred             EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873         116 IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus       116 ~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                      .-+|.||.|....    ...+...+...++|+..++
T Consensus       242 ~giVltk~D~~~~----~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          242 NQYIFTKIDETTS----LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             CEEEEECTTTCSC----CHHHHHHHHTCSCCCSEEC
T ss_pred             CEEEEeCCCcccc----hhHHHHHHHHHCcCEEEEE
Confidence            3456699997432    1245566677787654443

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=92.95  E-value=0.034  Score=39.96  Aligned_cols=17  Identities=29%  Similarity=0.348  Sum_probs=15.3

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|+|||+|++.+..
T Consensus        51 ~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           51 FGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             ESSSSSCHHHHHHHHHH
T ss_pred             ECCCCccHHHHHHHHHH
Confidence            39999999999999875

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=92.94  E-value=0.038  Score=36.60  Aligned_cols=17  Identities=29%  Similarity=0.325  Sum_probs=14.8

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++||||||+.+.+.+
T Consensus         8 ~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            8 DGPSASGKSSVARRVAA   24 (208)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            39999999999998854

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=92.94  E-value=0.026  Score=43.40  Aligned_cols=15  Identities=47%  Similarity=0.680  Sum_probs=13.9

Q ss_pred             CCCCCCChhhhHhhh
Q psy1873           1 MGYRSVGKSSLSIQF   15 (157)
Q Consensus         1 vG~~~~GKssli~~~   15 (157)
                      +|++|+|||||++.|
T Consensus        45 ~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           45 SGTSGTGKTLFSIQF   59 (525)
T ss_dssp             EESTTSSHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHH
Confidence            599999999999995

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=92.86  E-value=0.027  Score=35.35  Aligned_cols=18  Identities=11%  Similarity=0.069  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||++++.+...
T Consensus        33 ~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           33 TGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             EEETTCCHHHHHGGGCCT
T ss_pred             ECCCCccHHHHHHHHHHh
Confidence            389999999999888653

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=92.82  E-value=0.028  Score=41.84  Aligned_cols=16  Identities=31%  Similarity=0.382  Sum_probs=14.4

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|++|+|||||+..++
T Consensus       184 ~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          184 FGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             EcCCCCChHHHHHHHH
Confidence            4899999999999875

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=92.82  E-value=0.041  Score=37.96  Aligned_cols=17  Identities=35%  Similarity=0.456  Sum_probs=14.6

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++||||||+.+.|..
T Consensus        28 ~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           28 SGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            39999999999988754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=92.79  E-value=0.035  Score=43.57  Aligned_cols=18  Identities=28%  Similarity=0.425  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+-
T Consensus       384 iG~NGsGKSTLlk~l~Gl  401 (608)
T 3j16_B          384 MGENGTGKTTLIKLLAGA  401 (608)
T ss_dssp             ESCTTSSHHHHHHHHHTS
T ss_pred             ECCCCCcHHHHHHHHhcC
Confidence            599999999999999764

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=92.76  E-value=0.042  Score=40.36  Aligned_cols=18  Identities=28%  Similarity=0.421  Sum_probs=15.7

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||+|++.+.+.
T Consensus        58 ~G~~G~GKT~L~~~~~~~   75 (412)
T 1w5s_A           58 IGRVGIGKTTLAKFTVKR   75 (412)
T ss_dssp             TTCCSSSHHHHHHHHHHH
T ss_pred             cCcCCCCHHHHHHHHHHH
Confidence            499999999999998753

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=92.75  E-value=0.032  Score=39.99  Aligned_cols=18  Identities=33%  Similarity=0.453  Sum_probs=15.5

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||+|++.+.+.
T Consensus        36 ~G~~G~GKT~L~~~~~~~   53 (357)
T 2fna_A           36 LGLRRTGKSSIIKIGINE   53 (357)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            389999999999998753

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=92.75  E-value=0.039  Score=39.56  Aligned_cols=17  Identities=29%  Similarity=0.313  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|+|||+|++.+..
T Consensus        57 ~GppGtGKT~la~aia~   73 (322)
T 3eie_A           57 YGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             ECSSSSCHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            39999999999999865

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=92.74  E-value=0.042  Score=37.16  Aligned_cols=16  Identities=25%  Similarity=0.293  Sum_probs=14.4

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |++||||||+++.+.+
T Consensus        13 G~~gsGKsT~~~~l~~   28 (213)
T 4edh_A           13 GPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CSTTSSHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHH
Confidence            9999999999999854

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=92.73  E-value=0.032  Score=38.19  Aligned_cols=16  Identities=31%  Similarity=0.459  Sum_probs=11.6

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |++||||||+++.+.+
T Consensus        32 G~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           32 GIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCC---CHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999999864

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=92.72  E-value=0.032  Score=42.29  Aligned_cols=18  Identities=22%  Similarity=0.444  Sum_probs=15.6

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||++++.+...
T Consensus       207 ~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          207 IGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             ESCTTTTTHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999988653

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.69  E-value=0.041  Score=41.42  Aligned_cols=16  Identities=25%  Similarity=0.312  Sum_probs=14.8

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      ||||+|||+|+..+..
T Consensus       222 GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          222 GPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             SCTTSSHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHH
Confidence            9999999999999864

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=92.69  E-value=0.85  Score=30.34  Aligned_cols=86  Identities=9%  Similarity=0.035  Sum_probs=54.6

Q ss_pred             EEEEEEEeCCCC-ccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEE
Q psy1873          42 DYDLKLVDTAGQ-DEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG  120 (157)
Q Consensus        42 ~~~~~i~D~~g~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~  120 (157)
                      .+.+.+.|+++. ..  ......+..+|.+|++...+ ..++..+...+..+....   .             .++.+|.
T Consensus        67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~-------------~~~~vv~  127 (209)
T 3cwq_A           67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---N-------------NRFRILL  127 (209)
T ss_dssp             GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---S-------------SSEEEEE
T ss_pred             cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---C-------------CCEEEEE
Confidence            467789999876 32  23445667889988887754 566677766665554422   1             6788999


Q ss_pred             eCCCCCCCceecHHHHHHHHHHhCCcEE
Q psy1873         121 NKKDLHMERMISYDEGKRLAESWKAGFV  148 (157)
Q Consensus       121 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  148 (157)
                      |+.|.... .. ..+..++.++++.+++
T Consensus       128 N~~~~~~~-~~-~~~~~~~l~~~g~~v~  153 (209)
T 3cwq_A          128 TIIPPYPS-KD-GDEARQLLTTAGLPLF  153 (209)
T ss_dssp             CSBCCTTS-CH-HHHHHHHHHHTTCCBC
T ss_pred             EecCCccc-hH-HHHHHHHHHHcCCchh
Confidence            99986330 11 3445555555676544

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=92.64  E-value=0.033  Score=40.37  Aligned_cols=17  Identities=18%  Similarity=0.474  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|+|||++++.+..
T Consensus        76 ~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           76 AGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            39999999999999864

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=92.63  E-value=0.027  Score=39.93  Aligned_cols=16  Identities=25%  Similarity=0.420  Sum_probs=11.5

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |++||||||+.+.|..
T Consensus        12 G~sGSGKSTva~~L~~   27 (290)
T 1a7j_A           12 GSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             SCC---CCTHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8999999999998864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=92.58  E-value=0.039  Score=45.57  Aligned_cols=20  Identities=35%  Similarity=0.493  Sum_probs=17.4

Q ss_pred             CCCCCCChhhhHhhhhcccc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF   20 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~   20 (157)
                      +|+.|+|||||++.+.++..
T Consensus       467 iGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          467 CGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             ECSTTSSHHHHHHHHHHTCS
T ss_pred             ECCCCCCHHHHHHHHhCCCc
Confidence            69999999999999986543

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=92.54  E-value=0.045  Score=39.14  Aligned_cols=17  Identities=29%  Similarity=0.364  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|+|||+|+..+..
T Consensus       158 ~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          158 YGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            39999999999988865

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=92.51  E-value=0.043  Score=36.88  Aligned_cols=18  Identities=33%  Similarity=0.530  Sum_probs=15.9

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||+|...|...
T Consensus        40 ~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           40 TGDSGVGKSETALELVQR   57 (205)
T ss_dssp             ECCCTTTTHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            499999999999998754

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=92.49  E-value=0.048  Score=36.25  Aligned_cols=17  Identities=24%  Similarity=0.300  Sum_probs=14.8

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|.+||||||+.+.|..
T Consensus        18 tG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           18 TGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999998864

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=92.43  E-value=0.045  Score=41.15  Aligned_cols=17  Identities=24%  Similarity=0.272  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|+|||+|++.+.+
T Consensus       136 ~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          136 YGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             ECSSSSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998865

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.40  E-value=0.046  Score=40.68  Aligned_cols=16  Identities=25%  Similarity=0.320  Sum_probs=14.8

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      ||||+|||.|+..+.+
T Consensus       189 GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          189 GPPGTGKTLLARAVAH  204 (405)
T ss_dssp             SCSSSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999999864

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=92.39  E-value=0.038  Score=42.72  Aligned_cols=17  Identities=35%  Similarity=0.472  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|+|||+|++.+.+
T Consensus       114 ~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A          114 AGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             ESSSSSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998864

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=92.37  E-value=0.036  Score=43.87  Aligned_cols=15  Identities=33%  Similarity=0.437  Sum_probs=13.4

Q ss_pred             CCCCCCChhhhHhhh
Q psy1873           1 MGYRSVGKSSLSIQF   15 (157)
Q Consensus         1 vG~~~~GKssli~~~   15 (157)
                      +|++|||||||++.+
T Consensus       354 iGpnGsGKSTLl~~i  368 (670)
T 3ux8_A          354 TGVSGSGKSTLVNEV  368 (670)
T ss_dssp             ECSTTSSHHHHHTTT
T ss_pred             EeeCCCCHHHHHHHH
Confidence            699999999999764

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=92.34  E-value=0.054  Score=36.85  Aligned_cols=15  Identities=33%  Similarity=0.682  Sum_probs=13.7

Q ss_pred             CCCCCChhhhHhhhh
Q psy1873           2 GYRSVGKSSLSIQFV   16 (157)
Q Consensus         2 G~~~~GKssli~~~~   16 (157)
                      |+||+|||+|+..++
T Consensus        37 G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           37 GGTGTGKTTFAAQFI   51 (251)
T ss_dssp             CCTTSSHHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHH
Confidence            899999999998875

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=92.28  E-value=0.042  Score=37.60  Aligned_cols=16  Identities=31%  Similarity=0.430  Sum_probs=14.4

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |..||||||+++.+..
T Consensus         9 G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            9 GNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             ECTTSSHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHH
Confidence            8999999999998864

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=92.27  E-value=0.053  Score=36.15  Aligned_cols=16  Identities=25%  Similarity=0.306  Sum_probs=13.8

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |..||||||.++.+.+
T Consensus         7 G~DGsGKsTq~~~L~~   22 (197)
T 3hjn_A            7 GIDGSGKSTQIQLLAQ   22 (197)
T ss_dssp             CSTTSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8999999999888753

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=92.26  E-value=0.041  Score=40.04  Aligned_cols=18  Identities=22%  Similarity=0.386  Sum_probs=15.5

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||+|++.+.+.
T Consensus        51 ~G~~G~GKT~la~~l~~~   68 (384)
T 2qby_B           51 LGLTGTGKTFVSKYIFNE   68 (384)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            399999999999998753

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=92.19  E-value=0.033  Score=40.11  Aligned_cols=17  Identities=18%  Similarity=0.073  Sum_probs=15.3

Q ss_pred             CCCCCChhhhHhhhhcc
Q psy1873           2 GYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         2 G~~~~GKssli~~~~~~   18 (157)
                      |+||+|||++++.++..
T Consensus        52 GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           52 NADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             CCCSHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999998753

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=92.18  E-value=0.048  Score=39.45  Aligned_cols=16  Identities=38%  Similarity=0.459  Sum_probs=14.3

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|+.|+|||+|+..++
T Consensus        29 ~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           29 IGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999864

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=92.13  E-value=0.047  Score=35.97  Aligned_cols=16  Identities=31%  Similarity=0.409  Sum_probs=13.3

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      .|++|+||||++.++.
T Consensus         9 ~G~~gsGKTT~ll~~~   24 (184)
T 2orw_A            9 TGPMYSGKTTELLSFV   24 (184)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            3899999999986654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	157
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	4e-27
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	9e-24
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-22
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	3e-22
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	7e-22
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-21
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	6e-21
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-20
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	2e-20
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-19
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-19
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	1e-19
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-19
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	3e-19
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	4e-19
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	5e-19
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	7e-19
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	1e-18
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	6e-18
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	7e-18
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	8e-18
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	1e-17
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	5e-17
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-16
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-16
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	4e-16
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	1e-15
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	1e-15
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	5e-15
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	5e-15
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	6e-15
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	9e-15
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-14
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	5e-14
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	5e-14
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	8e-13
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	7e-12
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	5e-11
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-10
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-10
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	6e-10
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	3e-09
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	4e-09
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-09
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	8e-09
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-08
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	2e-08
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	5e-08
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	9e-08
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	7e-07
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	3e-06
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	6e-06
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	9e-06
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-05
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	2e-04
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	3e-04
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	0.002

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.9 bits (243), Expect = 4e-27
 Identities = 41/157 (26%), Positives = 78/157 (49%), Gaps = 15/157 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGK+ +  +F +  F  ++  TI   F ++T  ++ +   L++ DTAGQ+ +   
Sbjct: 12  IGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 71

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              Y     G +LVY IT+ KSF+ ++     + +                 + V  +++
Sbjct: 72  TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH--------------ASADVEKMIL 117

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK D++ +R +S + G++LA  +   F+E SAK + 
Sbjct: 118 GNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANI 154

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.8 bits (219), Expect = 9e-24
 Identities = 55/156 (35%), Positives = 92/156 (58%), Gaps = 13/156 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QFV G F++ YDPTIE+ + K   +++    L+++DTAG ++++   
Sbjct: 9   LGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMR 68

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y  +  G++LVYS+ + +SF+ ++ + D+++ +                  VP++LVG
Sbjct: 69  DLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-------------EKVPVILVG 115

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK DL  ER +S  EG+ LAE W   F+E SAK   
Sbjct: 116 NKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKT 151

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.4 bits (213), Expect = 1e-22
 Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 16/157 (10%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L ++FV+ +F  S+  TI   F +KT  +N +   L++ DTAGQ+ +   
Sbjct: 8   IGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI 67

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              Y     G +LVY IT  ++F  ++  +  + +                     ++LV
Sbjct: 68  TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH--------------ANDEAQLLLV 113

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK D+   R+++ D+G+ LA+     F+E+SAK DD
Sbjct: 114 GNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDD 149

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (209), Expect = 3e-22
 Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 15/157 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENT-FVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L  QF + +F+     TI      +   ++ Q   L++ DTAGQ+ +   
Sbjct: 10  IGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV 69

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              Y     G ++VY IT   ++  +        ++                 +  I+L+
Sbjct: 70  TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--------------TNPNTVIILI 115

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK DL  +R ++Y+E K+ AE     F+EASAK  +
Sbjct: 116 GNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGE 152

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (207), Expect = 7e-22
 Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 15/154 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGK+ L  +F  G F      TI   F +KT  +N +   L++ DTAGQ+ +   
Sbjct: 11  IGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSI 70

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              Y    +  +L Y IT  +SF  +     ++                   + V  VLV
Sbjct: 71  TQSYYRSANALILTYDITCEESFRCLPEWLREIEQY--------------ASNKVITVLV 116

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           GNK DL   R +S    +  +E+    ++E SAK
Sbjct: 117 GNKIDLAERREVSQQRAEEFSEAQDMYYLETSAK 150

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.6 bits (203), Expect = 3e-21
 Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 15/157 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTT-RMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS+L  +F   +F      TI   F   + +++ +    ++ DTAGQ+ Y   
Sbjct: 10  IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI 69

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
            + Y     G +LVY I  H ++E V+    +L D                 S++ I+LV
Sbjct: 70  TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH--------------ADSNIVIMLV 115

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK DL   R +  DE +  AE     F+E SA    
Sbjct: 116 GNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDST 152

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.2 bits (202), Expect = 6e-21
 Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 15/157 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L ++F D  + + Y  TI   F +KT  ++ +   L++ DTAGQ+ +   
Sbjct: 12  IGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI 71

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
            + Y    HG ++VY +T  +SF  V++   ++                   S+V  +LV
Sbjct: 72  TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY--------------ATSTVLKLLV 117

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK DL  +R++ YD  K  A++ K  F+E SA    
Sbjct: 118 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDST 154

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 80.8 bits (198), Expect = 2e-20
 Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 13/156 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QF+  +FV+ Y+PT  +++ K   ++ ++  + ++DTAGQ++Y+   
Sbjct: 10  VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIR 69

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y     G++ V+SIT  +SF       +++L +                 +VP +LVG
Sbjct: 70  DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-------------ENVPFLLVG 116

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK DL  +R +S +E K  A+ W   +VE SAK   
Sbjct: 117 NKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRA 152

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.3 bits (197), Expect = 2e-20
 Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 16/158 (10%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLV--DTAGQDEYSI 58
           +G   VGK+ L ++F DG F+     +      +   ++     +KL   DTAGQ+ +  
Sbjct: 12  VGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS 71

Query: 59  FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
               Y  D H  +L+Y +T+  SF+ +Q    ++ +                   V ++L
Sbjct: 72  VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEY--------------AQHDVALML 117

Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           +GNK D   ER++  ++G++LA+ +   F+E SAK   
Sbjct: 118 LGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGL 155

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (193), Expect = 1e-19
 Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 15/157 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKSSL ++F D  F      TI  +  VKT  ++     L + DTAGQ+ +   
Sbjct: 13  IGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL 72

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              Y     G +LVY +T   +F  +    ++L     +                 + ++
Sbjct: 73  TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDI--------------VNML 118

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
              K     R +  +EG + A      F+EASAK  D
Sbjct: 119 VGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCD 155

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (193), Expect = 1e-19
 Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 27/169 (15%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G  +VGK+ L I +   +F   Y PT+ + +  T  +  + Y L L DTAGQ++Y    
Sbjct: 9   VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 68

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
                    +++ +S+ S  SFE V+  +   +                     P +LVG
Sbjct: 69  PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--------------HCPKTPFLLVG 114

Query: 121 NKKDLHMERMI------------SYDEGKRLAESWKA-GFVEASAKQDD 156
            + DL  +               + +  ++LA   KA  +VE SA    
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQK 163

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 1e-19
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 14/156 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L+IQ +   FVD YDPTIE+++ K   ++ +   L ++DTAGQ+EYS   
Sbjct: 9   VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QY     G++ V++I + KSFE +    +++  +                  VP+VLVG
Sbjct: 69  DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-------------DDVPMVLVG 115

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK D    R +   + + LA S+   ++E SAK   
Sbjct: 116 NKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQ 150

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (191), Expect = 2e-19
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 15/157 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRM-NNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKS L +QF D +F   +D TI   F       + +   L++ DTAGQ+ +   
Sbjct: 9   IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI 68

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              Y     G +LVY IT  ++F  +    +     +                ++ I+L+
Sbjct: 69  TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS--------------NMVIMLI 114

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK DL   R +  +EG+  A      F+E SAK   
Sbjct: 115 GNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTAC 151

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (189), Expect = 3e-19
 Identities = 53/157 (33%), Positives = 78/157 (49%), Gaps = 15/157 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTI-ENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G +SVGK+SL  +F+   F ++Y  TI  +   KT  + ++   L+L DTAGQ+ +   
Sbjct: 6   LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSL 65

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              Y  D    V+VY IT+  SF+      D +    G              S V I+LV
Sbjct: 66  IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG--------------SDVIIMLV 111

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK DL  +R +S +EG+R A+     F+E SAK   
Sbjct: 112 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGY 148

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (189), Expect = 4e-19
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 15/157 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTT-RMNNQDYDLKLVDTAGQDEYSIF 59
           +G    GKS L  QF++ +F D  + TI   F      +  +   L++ DTAGQ+ +   
Sbjct: 11  IGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV 70

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              Y     G +LVY ITS +++  +         +  +               + I+L 
Sbjct: 71  TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--------------IVIILC 116

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNKKDL  +R +++ E  R A+  +  F+E SA   +
Sbjct: 117 GNKKDLDADREVTFLEASRFAQENELMFLETSALTGE 153

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (189), Expect = 5e-19
 Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 24/167 (14%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTT-----------RMNNQDYDLKLVD 49
           +G   VGK++   ++ D +F   +  T+   F +                     L+L D
Sbjct: 11  LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWD 70

Query: 50  TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTS 109
           TAGQ+ +      +  D  G++L++ +TS +SF  V+    +L                 
Sbjct: 71  TAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA------------- 117

Query: 110 CVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
              +  IVL+GNK DL  +R ++  + + LA+ +   + E SA    
Sbjct: 118 YCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQ 164

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.2 bits (186), Expect = 7e-19
 Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 15/155 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRM-NNQDYDLKLVDTAGQDEY-SI 58
           +G  +VGK+ L+ +F  G+F D  + TI   F +     + +   ++L DTAGQ+ +   
Sbjct: 8   IGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKS 67

Query: 59  FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
               Y  ++H  V VY +T+  SF  +    ++                    + +P +L
Sbjct: 68  MVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQH-------------LLANDIPRIL 114

Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           VGNK DL     +  D  ++ A++      E SAK
Sbjct: 115 VGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAK 149

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (186), Expect = 1e-18
 Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 12/156 (7%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
            G   VGKSSL ++FV G F +SY PT+E+T+ +    +     L++ DT G  ++    
Sbjct: 8   FGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQ 67

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
                  H ++LVYSITS +S E ++ +Y+++ ++ G +++            +PI+LVG
Sbjct: 68  RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES------------IPIMLVG 115

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK D    R +   E + LA +WK  F+E SAK + 
Sbjct: 116 NKCDESPSREVQSSEAEALARTWKCAFMETSAKLNH 151

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.8 bits (180), Expect = 6e-18
 Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 15/157 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGK+SL +++ + +F D +  T+  +F+ K   +  +  +L + DTAGQ+ +   
Sbjct: 9   LGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL 68

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              Y  D +G +LVY IT   SF+ V+    +L  M                + + + +V
Sbjct: 69  GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM--------------LGNEICLCIV 114

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK DL  ER +S  E +  AES  A     SAKQ+ 
Sbjct: 115 GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNK 151

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.8 bits (180), Expect = 7e-18
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 13/155 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRM-NNQDYDLKLVDTAGQDEYSIF 59
           +G   VGKSSL  ++V  +F      TI   F+      +     +++ DTAGQ+ +   
Sbjct: 12  LGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSL 71

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              +       +L +S+   +SF+ +     + +      +            S P V++
Sbjct: 72  RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEP----------ESFPFVIL 121

Query: 120 GNKKDLHMERMISYDEGKRLA-ESWKAGFVEASAK 153
           GNK D+  ER +S +E +    ++    + E SAK
Sbjct: 122 GNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAK 155

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (179), Expect = 8e-18
 Identities = 57/157 (36%), Positives = 92/157 (58%), Gaps = 14/157 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L++QFV G FV+ YDPTIE+++ K   ++ Q   L+++DTAG ++++   
Sbjct: 9   LGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMR 68

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y  +  G+ LVYSIT+  +F  +Q L +++L +                  VP++LVG
Sbjct: 69  DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-------------EDVPMILVG 115

Query: 121 NKKDLHMERMISYDEGKRLAESWKA-GFVEASAKQDD 156
           NK DL  ER++  ++G+ LA  W    F+E+SAK   
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKI 152

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.0 bits (178), Expect = 1e-17
 Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 15/157 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G  SVGK+S   ++ D  F  ++  T+  +  VKT   N++   L++ DTAGQ+ Y   
Sbjct: 11  IGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTI 70

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              Y     G++L+Y IT+ +SF  VQ    ++                    +  ++LV
Sbjct: 71  TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY--------------SWDNAQVLLV 116

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK D+  ER++S + G++LA+     F EASAK + 
Sbjct: 117 GNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNI 153

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.6 bits (174), Expect = 5e-17
 Identities = 54/156 (34%), Positives = 88/156 (56%), Gaps = 13/156 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L+IQF+   FV  YDPTIE+++ K   ++++   L ++DTAGQ+E+    
Sbjct: 11  VGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMR 70

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QY     G++LV+S+T   SFE +     ++L +                   P++L+G
Sbjct: 71  EQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVK-------------DRDEFPMILIG 117

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK DL  +R ++ +EG++LA   K  ++EASAK   
Sbjct: 118 NKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRM 153

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.5 bits (171), Expect = 1e-16
 Identities = 57/157 (36%), Positives = 87/157 (55%), Gaps = 13/157 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L+IQF    FV  YDPTIE++++K T ++NQ   L ++DTAGQ+E+S   
Sbjct: 10  VGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMR 69

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QY     G+++VYS+T   SFE V   +  +L +  +                P++LV 
Sbjct: 70  EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF-------------PMILVA 116

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157
           NK DL   R ++ D+GK +A  +   ++E SAK    
Sbjct: 117 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPL 153

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 2e-16
 Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 27/166 (16%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G  +VGK+ L I +    F   Y PT+ + +     ++ +  +L L DTAGQ++Y    
Sbjct: 11  VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 70

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
                     ++ +S+ S  SFE V+  +   +                   + PI+LVG
Sbjct: 71  PLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH--------------HCPNTPIILVG 116

Query: 121 NKKDLHMERMIS------------YDEGKRLAESWKA-GFVEASAK 153
            K DL  ++               Y +G  +A+   A  ++E SA 
Sbjct: 117 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.7 bits (169), Expect = 4e-16
 Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 11/157 (7%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G   VGK+SL  Q+V+ +F + Y  TI  +   K   ++++   +++ DTAGQ+ +   
Sbjct: 8   LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL 67

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              +       VLV+ +T+  +F+ +    D+ L                   + P V++
Sbjct: 68  GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPR----------DPENFPFVVL 117

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK DL   ++ +              + E SAK+  
Sbjct: 118 GNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAI 154

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (166), Expect = 1e-15
 Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 27/169 (15%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G  +VGK+ L + + +  F + Y PT+ + +  +  +  + Y L L DTAGQ++Y    
Sbjct: 15  VGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLR 74

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
                    +++ +S+ +  SF+ V+  +   L                   +VP +L+G
Sbjct: 75  PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE--------------YAPNVPFLLIG 120

Query: 121 NKKDLHMER------------MISYDEGKRLAESWKA-GFVEASAKQDD 156
            + DL  +              I  ++G++LA+   A  +VE SA    
Sbjct: 121 TQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQK 169

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (165), Expect = 1e-15
 Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 13/156 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L+IQF+   FV  YDPTIE+++ K   ++     L ++DTAGQ+E+    
Sbjct: 12  VGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMR 71

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            QY    HG++LV++I   +SF  V  L+ ++L +  +                P+VLVG
Sbjct: 72  EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-------------DDFPVVLVG 118

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK DL  +R +   E      S    + EASAK   
Sbjct: 119 NKADLESQRQVPRSEASAFGASHHVAYFEASAKLRL 154

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (161), Expect = 5e-15
 Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 15/157 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRM-NNQDYDLKLVDTAGQDEYSIF 59
           +G  +VGKSSL ++FV GQF +  + TI   F+  T   ++     ++ DTAGQ+ Y   
Sbjct: 12  LGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              Y       ++VY IT+ +SF   +    +L                    ++ I L 
Sbjct: 72  APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP--------------NIVIALS 117

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK DL  +R + + E +  A+     F+E SAK   
Sbjct: 118 GNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSM 154

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.6 bits (161), Expect = 5e-15
 Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 27/166 (16%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G    GK++L   F    F ++Y PT+   +  +  ++ Q  +L L DT+G   Y    
Sbjct: 8   VGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVR 67

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
                D    ++ + I+  ++ + V   +   +                   +  ++LVG
Sbjct: 68  PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE--------------FCPNTKMLLVG 113

Query: 121 NKKDL------------HMERMISYDEGKRLAESWKA-GFVEASAK 153
            K DL            H +  +SYD+G  +A+   A  ++E SA 
Sbjct: 114 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 159

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.2 bits (160), Expect = 6e-15
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 18/160 (11%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLV-DTAGQDEYSIF 59
           +G  +VGKSS+ ++FV   F ++ +PTI   F+      N+      + DTAGQ+ ++  
Sbjct: 9   LGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASL 68

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              Y  +    ++VY +T  +SF   +    +L +                   + I LV
Sbjct: 69  APMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ--------------ASKDIIIALV 114

Query: 120 GNKKDLHM---ERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK D+     ER ++ +EG++LAE     F E SAK  +
Sbjct: 115 GNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGE 154

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (158), Expect = 9e-15
 Identities = 101/156 (64%), Positives = 124/156 (79%), Gaps = 13/156 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +GYRSVGKSSL+IQFV+GQFVDSYDPTIENTF K   +N Q+Y L+LVDTAGQDEYSIFP
Sbjct: 10  LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 69

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             YS+DI+GY+LVYS+TS KSFEV+++++ KLLDM                  +PI+LVG
Sbjct: 70  QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV-------------GKVQIPIMLVG 116

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NKKDLHMER+ISY+EGK LAESW A F+E+SAK++ 
Sbjct: 117 NKKDLHMERVISYEEGKALAESWNAAFLESSAKENQ 152

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.0 bits (157), Expect = 2e-14
 Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 15/157 (9%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLV-DTAGQDEYSIF 59
           +G   VGKSS+  +FV+  F  + +PTI  +F+  T     +    L+ DTAG + +   
Sbjct: 10  LGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRAL 69

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              Y       ++VY IT  ++F  ++    +L                       + + 
Sbjct: 70  APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIV--------------VAIA 115

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK DL   R +   + K  A+S  A FVE SAK   
Sbjct: 116 GNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAI 152

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 5e-14
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 14/156 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
            G   VGKS+L ++F+  +F+  YDPT+E+T+     ++++   ++++DTAGQ++     
Sbjct: 8   FGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQRE 67

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             +     G+VLVY IT   S                 +   ++        +V ++LVG
Sbjct: 68  -GHMRWGEGFVLVYDITDRGS-------------FEEVLPLKNILDEIKKPKNVTLILVG 113

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK DL   R +S +EG++LA      F E SA   +
Sbjct: 114 NKADLDHSRQVSTEEGEKLATELACAFYECSACTGE 149

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.9 bits (154), Expect = 5e-14
 Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 27/169 (15%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G  + GK+ L I     QF + Y PT+   +V    ++ +  +L L DTAG ++Y    
Sbjct: 8   VGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLR 67

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
                D    ++ +SI S  S E +   +   +                   +VPI+LVG
Sbjct: 68  PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--------------HFCPNVPIILVG 113

Query: 121 NKKDLHMERMI------------SYDEGKRLAESWKA-GFVEASAKQDD 156
           NKKDL  +                 +EG+ +A    A G++E SAK  D
Sbjct: 114 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 162

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.9 bits (146), Expect = 8e-13
 Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 14/160 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV--KTTRMNNQDYDLKLVDTAGQDEYSI 58
           +G   VGK+SL  ++V+ ++   Y  TI   F+  + T   ++   +++ DTAGQ+ +  
Sbjct: 8   LGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS 67

Query: 59  FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
               +       VLVY +T+  SFE          ++        V +  +   + P V+
Sbjct: 68  LGVAFYRGADCCVLVYDVTNASSFE----------NIKSWRDEFLVHANVNSPETFPFVI 117

Query: 119 VGNKKDLHMERMISYDEGKRL--AESWKAGFVEASAKQDD 156
           +GNK D    + I  ++  +              SAK   
Sbjct: 118 LGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 157

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (138), Expect = 7e-12
 Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 16/157 (10%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTI-ENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
           +G  +VGKSS+  ++  G F   Y  TI  +   +  ++N++D  L L DTAGQ+E+   
Sbjct: 8   VGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI 67

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              Y       VLV+S T  +SFE +    +K                 + V  +P  LV
Sbjct: 68  TKAYYRGAQACVLVFSTTDRESFEAISSWREK---------------VVAEVGDIPTALV 112

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
            NK DL  +  I  +E + LA+  K  F   S K+D 
Sbjct: 113 QNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDL 149

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 5e-11
 Identities = 27/156 (17%), Positives = 49/156 (31%), Gaps = 10/156 (6%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G + VGKS+L+  F         D  +         +        ++     +      
Sbjct: 9   IGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENE 68

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             +   +        + S       +   +  + +                  +PI+LVG
Sbjct: 69  WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLR----------RARQTEDIPIILVG 118

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK DL   R +S  EG+  A  +   F+E SA    
Sbjct: 119 NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQH 154

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-10
 Identities = 21/159 (13%), Positives = 46/159 (28%), Gaps = 20/159 (12%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G  + GK+++  +   G+ V     TI         +  ++    + D  GQD+     
Sbjct: 6   VGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y  +  G + V      +     +    ++L                 +    +++  
Sbjct: 62  RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED-------------ELRDAVLLVFA 108

Query: 121 NKK---DLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK+   +      I+   G               A   D
Sbjct: 109 NKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGD 147

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 2e-10
 Identities = 44/156 (28%), Positives = 65/156 (41%), Gaps = 14/156 (8%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G   VGKS+L+  F   +          +T+ ++  ++ ++  L + D   QD     P
Sbjct: 7   LGAPGVGKSALARIFGGVED-GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLP 65

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
                    YV+VYS+T   SFE    L  +L                     VPI+LVG
Sbjct: 66  GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR-------------QTDDVPIILVG 112

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK DL   R +S DEG+  A  +   F+E SA    
Sbjct: 113 NKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHH 148

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 6e-10
 Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 20/159 (12%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G    GKSSL  +F+ G +    + T    + K   ++ Q + + + + AG  +     
Sbjct: 11  LGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA---- 65

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            ++S      + V+S+    SF+ V  L+ +L  +                  + + LVG
Sbjct: 66  -KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSL-----------RGEGRGGLALALVG 113

Query: 121 NKKDLHME--RMISYDEGKRLA-ESWKAGFVEASAKQDD 156
            +  +     R++     + L  +  +  + E  A    
Sbjct: 114 TQDRISASSPRVVGDARARALCADMKRCSYYETCATYGL 152

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.3 bits (122), Expect = 3e-09
 Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYS 64
             GKS++  Q      V     T     +  T+      +  + D  GQ +      Q  
Sbjct: 16  ESGKSTIVKQMRILHVV----LTSG---IFETKFQVDKVNFHMFDVGGQRDERRKWIQCF 68

Query: 65  MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD 124
            D+   + V + +S+          ++L +    +  S   +    + ++ ++L  NK+D
Sbjct: 69  NDVTAIIFVVASSSYNMVIREDNQTNRLQEAL-NLFKSIWNNR--WLRTISVILFLNKQD 125

Query: 125 LHMERMIS 132
           L  E++++
Sbjct: 126 LLAEKVLA 133

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 4e-09
 Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 18/157 (11%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTR-MNNQDYDLKLVDTAGQDEYSIF 59
           +G    GK++   + + G+F   Y  T+           N       + DTAGQ+++   
Sbjct: 9   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL 68

Query: 60  PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
              Y +     ++++ +TS  +++ V   +  L+ +   I               PIVL 
Sbjct: 69  RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENI---------------PIVLC 113

Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           GNK D+   ++ +              + + SAK + 
Sbjct: 114 GNKVDIKDRKVKAKS--IVFHRKKNLQYYDISAKSNY 148

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 6e-09
 Identities = 24/159 (15%), Positives = 47/159 (29%), Gaps = 20/159 (12%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G  + GK+++  +   GQ V     TI         +  ++    + D  GQD+     
Sbjct: 18  LGLDAAGKTTILYKLKLGQSVT----TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 73

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y     G + V         +  +    ++++                +    I++  
Sbjct: 74  RHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND-------------REMRDAIILIFA 120

Query: 121 NKKDLHMER---MISYDEGKRLAESWKAGFVEASAKQDD 156
           NK+DL        I    G             + A   D
Sbjct: 121 NKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGD 159

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 8e-09
 Identities = 29/159 (18%), Positives = 57/159 (35%), Gaps = 19/159 (11%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G +  GK++       GQF +   PT+        ++   +  +KL D  GQ  +    
Sbjct: 8   VGLQYSGKTTFVNVIASGQFNEDMIPTV---GFNMRKITKGNVTIKLWDIGGQPRFRSMW 64

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            +Y   +   V +      +  E  +     LLD                +  +P++++G
Sbjct: 65  ERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK-------------PQLQGIPVLVLG 111

Query: 121 NKKDLH---MERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK+DL     E+ +         +  +      S K+ D
Sbjct: 112 NKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKD 150

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.5 bits (117), Expect = 1e-08
 Identities = 27/140 (19%), Positives = 49/140 (35%), Gaps = 9/140 (6%)

Query: 2   GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA 61
           G    GKS+   Q    + +   DPT     +       ++   K+VD  GQ        
Sbjct: 9   GAGESGKSTFLKQM---RIIHGQDPTK---GIHEYDFEIKNVPFKMVDVGGQRSERKRWF 62

Query: 62  QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121
           +    +   + + S +      +     ++ L  +  I  + V +     S+V I+L  N
Sbjct: 63  ECFDSVTSILFLVSSSEFDQVLMEDRQTNR-LTESLNIFETIVNNR--VFSNVSIILFLN 119

Query: 122 KKDLHMERMISYDEGKRLAE 141
           K DL  E++          E
Sbjct: 120 KTDLLEEKVQVVSIKDYFLE 139

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.2 bits (116), Expect = 2e-08
 Identities = 22/153 (14%), Positives = 45/153 (29%), Gaps = 11/153 (7%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G    GKS++  Q                  +  T    +D   K+ D  GQ       
Sbjct: 8   LGAGESGKSTIVKQMKIIHE-----AGT---GIVETHFTFKDLHFKMFDVGGQRSERKKW 59

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
                 +   +   +++ +          +++ +      +          +   I+L  
Sbjct: 60  IHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN---KWFTDTSIILFL 116

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           NKKDL  E++          E   +   E +A 
Sbjct: 117 NKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAA 149

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.1 bits (113), Expect = 5e-08
 Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 20/161 (12%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G    GK+ L ++ + GQ+ D+     +++ +     N  +    +     +       
Sbjct: 6   VGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLL 65

Query: 61  AQYSMDIHGYVLVYSITSHKSF--EVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
            ++       V V    + +    +V + LY  L+D      +              +++
Sbjct: 66  DRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNS------------PSLLI 113

Query: 119 VGNKKDLHMERMISYD------EGKRLAESWKAGFVEASAK 153
             NK+D+ M +           E   L  +  A      + 
Sbjct: 114 ACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 154

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 46.9 bits (110), Expect = 9e-08
 Identities = 28/156 (17%), Positives = 48/156 (30%), Gaps = 20/156 (12%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G  + GK++L  Q               N       + +Q + L + D  GQ +   + 
Sbjct: 22  LGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDIGGQRKIRPYW 77

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y  +    + V      K FE       +LL+                +S VP+++  
Sbjct: 78  RSYFENTDILIYVIDSADRKRFEETGQELTELLEE-------------EKLSCVPVLIFA 124

Query: 121 NKKDLHMER---MISYDEGKRLAESWKAGFVEASAK 153
           NK+DL        I+                  SA 
Sbjct: 125 NKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSAL 160

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 7e-07
 Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 20/159 (12%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G  + GK+++  QF   + V +      N       +   +    + D  GQ+      
Sbjct: 21  VGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQESLRSSW 76

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y  +    ++V   T  +   V +    K+L                 +    +++  
Sbjct: 77  NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE-------------DLRKAGLLIFA 123

Query: 121 NKKDL---HMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK+D+        IS        +  +       A   +
Sbjct: 124 NKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGE 162

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (100), Expect = 3e-06
 Identities = 23/150 (15%), Positives = 52/150 (34%), Gaps = 8/150 (5%)

Query: 5   SVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYS 64
             GKS+   Q        S  PT     +     + Q    ++VD  GQ           
Sbjct: 12  ESGKSTFIKQMRIIHG--SGVPTT---GIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCF 66

Query: 65  MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD 124
            ++   + + +++ +    V     +++ +     + + +  P     +  ++L  NKKD
Sbjct: 67  ENVTSIMFLVALSEYDQVLVESDNENRMEESKALFR-TIITYP--WFQNSSVILFLNKKD 123

Query: 125 LHMERMISYDEGKRLAESWKAGFVEASAKQ 154
           L  E+++         E         +A++
Sbjct: 124 LLEEKIMYSHLVDYFPEYDGPQRDAQAARE 153

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 41.9 bits (97), Expect = 6e-06
 Identities = 21/159 (13%), Positives = 47/159 (29%), Gaps = 20/159 (12%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G    GK+++  +   G+ V +              ++ ++  L + D  GQ     + 
Sbjct: 23  LGLDGAGKTTILYRLQIGEVVTTKP----TIGFNVETLSYKNLKLNVWDLGGQTSIRPYW 78

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y  D    + V   T              +L                 +    +++  
Sbjct: 79  RCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQE-------------EELQDAALLVFA 125

Query: 121 NKKDL---HMERMISYDEGKRLAESWKAGFVEASAKQDD 156
           NK+D         +S +      +      V +SA + +
Sbjct: 126 NKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGE 164

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 41.2 bits (95), Expect = 9e-06
 Identities = 26/159 (16%), Positives = 52/159 (32%), Gaps = 20/159 (12%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G  + GK+++  +F  G+ VD+  PT+         + ++ + L + D  GQ     + 
Sbjct: 8   LGLDNAGKTTILKKFN-GEDVDTISPTLGFNIK---TLEHRGFKLNIWDVGGQKSLRSYW 63

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y     G + V      +  +  Q     LL                 ++   +++  
Sbjct: 64  RNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVE-------------ERLAGATLLIFA 110

Query: 121 NKKDLHMERMIS---YDEGKRLAESWKAGFVEASAKQDD 156
           NK+DL      +            S        SA   +
Sbjct: 111 NKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGE 149

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 2e-05
 Identities = 21/159 (13%), Positives = 47/159 (29%), Gaps = 20/159 (12%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G    GK+++  +   G+ V     TI         +  ++   ++ D  G      + 
Sbjct: 11  LGLDGAGKTTILYRLQVGEVVT----TIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYW 66

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y  +    + V          + +     +L+                +    +V+  
Sbjct: 67  RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEE-------------ELRKAILVVFA 113

Query: 121 NKKDLHMERMIS---YDEGKRLAESWKAGFVEASAKQDD 156
           NK+D+      S      G    +  K    + SA +  
Sbjct: 114 NKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGT 152

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.8 bits (86), Expect = 2e-04
 Identities = 19/154 (12%), Positives = 45/154 (29%), Gaps = 7/154 (4%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G  + GK++L     + +      PT   T  +   +   +      D  G  +     
Sbjct: 6   LGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEE---LAIGNIKFTTFDLGGHIQARRLW 61

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
             Y  +++G V +      + F+  ++  D L ++        V       +   +    
Sbjct: 62  KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 121

Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
            +  L +         +R+           S   
Sbjct: 122 LRSALGLLNTT---GSQRIEGQRPVEVFMCSVVM 152

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (84), Expect = 3e-04
 Identities = 23/164 (14%), Positives = 42/164 (25%), Gaps = 18/164 (10%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
            G ++ GK+SL           +       +            D                
Sbjct: 9   AGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLK 68

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
            +         +V S    K           +L +T               + + I++  
Sbjct: 69  TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCE----------NGIDILIAC 118

Query: 121 NKKDLHMERMISYD------EGKRLAESWKAG--FVEASAKQDD 156
           NK +L   R  S        E +++ E  K     VE    ++D
Sbjct: 119 NKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEED 162

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 34.7 bits (78), Expect = 0.002
 Identities = 14/155 (9%), Positives = 38/155 (24%), Gaps = 6/155 (3%)

Query: 1   MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
           +G  + GK++L     D +           +      +          D  G  +     
Sbjct: 19  LGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE----ELTIAGMTFTTFDLGGHIQARRVW 74

Query: 61  AQYSMDIHGYVLVYSITSHKSFEVVQ--ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
             Y   I+G V +     H+     +  +      +    +    + +      ++    
Sbjct: 75  KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEER 134

Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
           +     L+ +         +   +        S  
Sbjct: 135 LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVL 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	157
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.96
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.91
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.91
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.9
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.89
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.89
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.89
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.88
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.88
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.87
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.86
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.83
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.81
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.8
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.78
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.77
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.77
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.77
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.76
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.72
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.7
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.67
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.65
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.63
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.59
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.58
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.55
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.52
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.39
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.35
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.32
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.32
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.31
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.27
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.18
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.17
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.14
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.11
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.09
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.96
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.91
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.84
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.72
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.67
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.48
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.23
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.07
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.06
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.89
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.87
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.76
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.61
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.54
d1okkd2	207	GTPase domain of the signal recognition particle r	97.51
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.4
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.4
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.39
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.15
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.02
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.9
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.83
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.79
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.77
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.71
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.64
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.56
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.47
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.47
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.42
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.38
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.36
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.35
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.33
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.28
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.28
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.27
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.26
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.26
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.24
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.21
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.18
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.17
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.15
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.15
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.14
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.13
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.13
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.08
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.08
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.08
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.08
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.06
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.06
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.05
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.04
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.03
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.01
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.99
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.99
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	95.98
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.97
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.94
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.93
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.93
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.92
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.9
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.89
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.89
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.87
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.86
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.85
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.82
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.81
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.75
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.74
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	95.73
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.71
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.67
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	95.65
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.65
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.65
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.6
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	95.53
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.53
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	95.49
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.49
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.49
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.48
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.4
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.29
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.28
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.28
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.26
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.26
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.19
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.16
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	94.99
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.93
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	94.89
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.81
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	94.74
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	94.71
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.71
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	94.7
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.67
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.62
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	94.49
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.36
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.32
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.25
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.2
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	93.83
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	93.49
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	93.47
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.36
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	93.32
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.32
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.3
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	93.17
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.12
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.05
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	93.04
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	92.98
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	92.87
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	92.67
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	92.61
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	92.53
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	92.53
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	92.43
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	92.3
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	92.26
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	92.26
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.21
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	92.18
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	92.11
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	91.71
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	91.66
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	91.47
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	91.3
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	91.16
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	91.04
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	91.0
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	90.83
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	90.81
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	90.62
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	90.46
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	90.44
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	90.41
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	90.35
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	90.19
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	89.69
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	89.16
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	88.47
d1tuea_	205	Replication protein E1 helicase domain {Human papi	88.25
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	87.95
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	87.94
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	87.84
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	86.05
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	85.34
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	85.02
d1pvda1	179	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	84.52
d1xpua3	289	Transcription termination factor Rho, ATPase domai	83.77
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	83.74
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	83.73
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	81.41

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-39  Score=214.10  Aligned_cols=144  Identities=72%  Similarity=1.169  Sum_probs=135.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|+++.+...+.||++..+...+.+++..+.+.+||++|++.+..++..+++.+|++|+|||+++++
T Consensus        10 iG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~   89 (167)
T d1xtqa1          10 LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIK   89 (167)
T ss_dssp             EESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTCHH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhhhcccchhh
Confidence            69999999999999999999999999999888888899999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +|+.+..|+.++........             +|++|||||+|+...+.++.++++.+++.++++|+||||++|+|
T Consensus        90 s~~~~~~~~~~i~~~~~~~~-------------~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~  153 (167)
T d1xtqa1          90 SFEVIKVIHGKLLDMVGKVQ-------------IPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQT  153 (167)
T ss_dssp             HHHHHHHHHHHHHHHHCSSC-------------CCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHH
T ss_pred             hhhhhhhhhhhhhhcccccc-------------cceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCC
Confidence            99999999999988776544             99999999999988889999999999999999999999999875

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-38  Score=210.22  Aligned_cols=143  Identities=40%  Similarity=0.641  Sum_probs=134.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|+++.+...+.+|.++.+.+.+.+++..+.+++||++|++.+..+++.++++++++++|||+++++
T Consensus        10 vG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~   89 (169)
T d1x1ra1          10 VGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKA   89 (169)
T ss_dssp             ECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEecccccch
Confidence            69999999999999999999989999998888888899999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD  156 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  156 (157)
                      ||+.+..|+..+.+......             .|++++|||+|+...++++.+++..+++.++++|+|||||+|.
T Consensus        90 Sf~~~~~~~~~i~~~~~~~~-------------~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~  152 (169)
T d1x1ra1          90 SFEHVDRFHQLILRVKDRES-------------FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPP  152 (169)
T ss_dssp             HHHTHHHHHHHHHHHHTSSC-------------CCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSC
T ss_pred             hhhccchhhHHHHhhccccC-------------ccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCC
Confidence            99999999999988765444             9999999999998888999999999999999999999999875

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=6.4e-39  Score=211.99  Aligned_cols=144  Identities=34%  Similarity=0.633  Sum_probs=133.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+.++|...+.+|++..+...+.+++..+.+.+||++|++++..+++.++++++++|+|||+++++
T Consensus        10 vG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   89 (168)
T d1u8za_          10 VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME   89 (168)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEEeeccchh
Confidence            69999999999999999999999999999888888899999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..+........             +|++|||||+|+.+.++++.++++.+++.++++|+||||++|+|
T Consensus        90 s~~~~~~~~~~i~~~~~~~~-------------~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~g  153 (168)
T d1u8za_          90 SFAATADFREQILRVKEDEN-------------VPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRAN  153 (168)
T ss_dssp             HHHHHHHHHHHHHHHHCCTT-------------SCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred             hhhhHHHHHHHHHHhhCCCC-------------CcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcC
Confidence            99999999999988765544             99999999999988889999999999999999999999999987

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-38  Score=209.94  Aligned_cols=143  Identities=31%  Similarity=0.374  Sum_probs=117.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|.+..+. .+.++.+..+...+.+++..+.+.+||++|++++..+++.+++++|++|+|||+++++
T Consensus         7 vG~~~vGKTsLi~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~   85 (168)
T d2gjsa1           7 LGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKG   85 (168)
T ss_dssp             ECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEETTCHH
T ss_pred             ECCCCcCHHHHHHHHhCCccC-CcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccccccc
Confidence            699999999999999987654 3456667777888899999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+.++........             +|+++||||+|+.+.++++..+++.+++.++++|+||||++|+|
T Consensus        86 s~~~~~~~~~~i~~~~~~~~-------------~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~  149 (168)
T d2gjsa1          86 SFEKASELRVQLRRARQTDD-------------VPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHN  149 (168)
T ss_dssp             HHHHHHHHHHHHHHHCC--C-------------CCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBS
T ss_pred             cccccccccchhhccccccc-------------ceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcC
Confidence            99999999999987665444             89999999999988889999999999999999999999999986

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-38  Score=211.13  Aligned_cols=144  Identities=38%  Similarity=0.634  Sum_probs=135.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||++||+++.+...+.+|..+.+.+.+.+++..+.+.+||++|++++..++..++++++++|+|||+++++
T Consensus        12 vG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~   91 (173)
T d2fn4a1          12 VGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQ   91 (173)
T ss_dssp             EECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeeeeeccccccc
Confidence            69999999999999999999999999988777888999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ||+.+..|+..+........             +|++|||||+|+...+.+..+++..+++.++++|+||||++|+|
T Consensus        92 s~~~~~~~~~~i~~~~~~~~-------------~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~g  155 (173)
T d2fn4a1          92 SFNEVGKLFTQILRVKDRDD-------------FPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLN  155 (173)
T ss_dssp             HHHHHHHHHHHHHHHHTSSC-------------CCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred             ccchhhhhhHHHHHHhccCC-------------CceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcC
Confidence            99999999999987765444             99999999999988888999999999999999999999999987

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-38  Score=208.45  Aligned_cols=143  Identities=34%  Similarity=0.499  Sum_probs=126.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||++||++++|...+.+|.+..+ ......++..+.+.+||++|++++..+++.++++++++|+|||++++
T Consensus         9 vG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~   88 (167)
T d1z08a1           9 LGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDE   88 (167)
T ss_dssp             ECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEEEeCCch
Confidence            69999999999999999999999999998665 66778888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +||+.+..|+..+.......              .|++|+|||+|+...++++.++++.+++.++++|+||||++|+|
T Consensus        89 ~Sf~~~~~~~~~~~~~~~~~--------------~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~  152 (167)
T d1z08a1          89 DSFQKVKNWVKELRKMLGNE--------------ICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKG  152 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHGGG--------------SEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBS
T ss_pred             hHHHhhhhhhhhcccccccc--------------cceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcC
Confidence            99999999999887666544              89999999999988899999999999999999999999999986

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-38  Score=210.23  Aligned_cols=145  Identities=37%  Similarity=0.641  Sum_probs=133.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||++||+.+.+...+.+|++..+.....+++..+.+.+||++|++.+..++..++++++++|+|||+++++
T Consensus         8 iG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~   87 (171)
T d2erxa1           8 FGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQ   87 (171)
T ss_dssp             ECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEEeeccccc
Confidence            69999999999999999999999999999888888899999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..+.+.....            ..+|++|||||+|+...++++.++++.+++.++++|+||||++|+|
T Consensus        88 s~~~~~~~~~~~~~~~~~~------------~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~  152 (171)
T d2erxa1          88 SLEELKPIYEQICEIKGDV------------ESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHN  152 (171)
T ss_dssp             HHHTTHHHHHHHHHHHC---------------CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred             chhcccchhhhhhhhhccC------------CCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcC
Confidence            9999999999887755421            2289999999999988889999999999999999999999999986

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.3e-38  Score=207.16  Aligned_cols=142  Identities=34%  Similarity=0.503  Sum_probs=132.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccc-eEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIEN-TFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||++||+++.+...+.+|++. .+......++..+.+.+||++|++++..+++.++++++++++|||++++
T Consensus         8 iG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~   87 (164)
T d1z2aa1           8 VGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDR   87 (164)
T ss_dssp             ECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEEEeccch
Confidence            699999999999999999999999999984 4477888899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++|+.+..|+.++......               +|++|||||+|+.+.++++.++++.+++.++++|+||||++|+|
T Consensus        88 ~s~~~~~~~~~~i~~~~~~---------------~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~  150 (164)
T d1z2aa1          88 ESFEAISSWREKVVAEVGD---------------IPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLN  150 (164)
T ss_dssp             HHHHTHHHHHHHHHHHHCS---------------CCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred             hhhhhcccccccccccCCC---------------ceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcC
Confidence            9999999999998776543               89999999999988889999999999999999999999999987

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-38  Score=207.80  Aligned_cols=142  Identities=35%  Similarity=0.543  Sum_probs=129.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||++||+.+.|.+.+.||++..+...+..+++.+.+++||++|++.+. .+..++++++++++|||+++++
T Consensus         8 vG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~~~   86 (168)
T d2atva1           8 FGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRG   86 (168)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeecccCCcc
Confidence            699999999999999999999999999998888888899999999999999998874 5677889999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD  156 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  156 (157)
                      +|+.+..|+..+........             .|+++||||+|+...+.++.++++.++++++++|+||||++|+
T Consensus        87 s~~~~~~~~~~~~~~~~~~~-------------~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~  149 (168)
T d2atva1          87 SFEEVLPLKNILDEIKKPKN-------------VTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGE  149 (168)
T ss_dssp             HHHTHHHHHHHHHHHHTTSC-------------CCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCT
T ss_pred             chhhhhhhcccccccccccC-------------cceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCC
Confidence            99999988776665554433             9999999999998888999999999999999999999999987

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-37  Score=208.49  Aligned_cols=143  Identities=27%  Similarity=0.439  Sum_probs=130.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||++||+.+.|...+.+|+++.+...+..++..+.+.+||++|++.+..++..+++++|++++|||+++++
T Consensus        15 vG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~   94 (185)
T d2atxa1          15 VGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPA   94 (185)
T ss_dssp             EECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeeeccccchHH
Confidence            69999999999999999999999999998877888888999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhC-CcE
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM------------ERMISYDEGKRLAESWK-AGF  147 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~  147 (157)
                      ||+++..|+..+.+.....              +|+++||||+|+.+            .+.++.+++.++++.++ ++|
T Consensus        95 Sf~~~~~~~~~~~~~~~~~--------------~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~  160 (185)
T d2atxa1          95 SFQNVKEEWVPELKEYAPN--------------VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY  160 (185)
T ss_dssp             HHHHHHHTHHHHHHHHSTT--------------CCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred             HHHHHHHHHHHHHHhcCCC--------------CCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEE
Confidence            9999988887777766443              99999999999863            46789999999999998 699


Q ss_pred             EEeccccCCC
Q psy1873         148 VEASAKQDDY  157 (157)
Q Consensus       148 ~e~Sa~~~~~  157 (157)
                      +||||++|+|
T Consensus       161 ~E~SAk~~~g  170 (185)
T d2atxa1         161 VECSALTQKG  170 (185)
T ss_dssp             EECCTTTCTT
T ss_pred             EEecCCCCcC
Confidence            9999999987

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-38  Score=206.75  Aligned_cols=144  Identities=38%  Similarity=0.657  Sum_probs=132.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||++||+.+.+...+.+|.++.+...+.+++..+.+++||++|++.+..+++.+++.++++++|||+++++
T Consensus        11 vG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   90 (171)
T d2erya1          11 VGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRG   90 (171)
T ss_dssp             EECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEeecccccc
Confidence            69999999999999999999999999998888888999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ||+.+..|+..++.......             .|++|||||+|+...+.++.+++..+++.++++|+||||++|+|
T Consensus        91 s~~~~~~~~~~~~~~~~~~~-------------~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~  154 (171)
T d2erya1          91 SFEEIYKFQRQILRVKDRDE-------------FPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMN  154 (171)
T ss_dssp             HHHTHHHHHHHHHHHHTSSC-------------CSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred             chhhHHHHhHHHHhhcccCC-------------CCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcC
Confidence            99999999999888776544             99999999999988889999999999999999999999999987

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-38  Score=206.72  Aligned_cols=144  Identities=38%  Similarity=0.708  Sum_probs=134.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||++||+++.+...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++++++++++|||+++++
T Consensus         9 vG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~   88 (167)
T d1kaoa_           9 LGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQ   88 (167)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeeeeeecchh
Confidence            69999999999999999999999999999888888899999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +|+.+..|+..+........             +|++|||||+|+...+.+..+++..+++.++++|+||||++|+|
T Consensus        89 s~~~~~~~~~~~~~~~~~~~-------------~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~  152 (167)
T d1kaoa_          89 SFQDIKPMRDQIIRVKRYEK-------------VPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTM  152 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTTSC-------------CCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHH
T ss_pred             hhhhhhchhhhhhhhccCCC-------------CCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcC
Confidence            99999999999887665443             99999999999988888999999999999999999999999875

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-37  Score=204.60  Aligned_cols=144  Identities=40%  Similarity=0.714  Sum_probs=134.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||++||+.++|...+.+|++..+...+.+++..+.+.+||++|++.+..+++.++++++++|+|||+++++
T Consensus         9 vG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   88 (167)
T d1c1ya_           9 LGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQS   88 (167)
T ss_dssp             ECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEeeeccchh
Confidence            69999999999999999999999999999888888889999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW-KAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~  157 (157)
                      ||+.+..|+..+.+......             +|++|||||+|+...+.+..+++..+++++ +++|+||||++|+|
T Consensus        89 sf~~~~~~~~~~~~~~~~~~-------------~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~g  153 (167)
T d1c1ya_          89 TFNDLQDLREQILRVKDTED-------------VPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKIN  153 (167)
T ss_dssp             HHHTHHHHHHHHHHHHCCSC-------------CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBS
T ss_pred             hhHhHHHHHHHHHHhcCCCC-------------CeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcC
Confidence            99999999999987765433             999999999999888889999999999885 68999999999987

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-37  Score=204.81  Aligned_cols=143  Identities=31%  Similarity=0.459  Sum_probs=130.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|+++.+...+.+|++..+.....+++..+.+++||++|++.+..+++.++++++++|+|||+++++
T Consensus         8 vG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   87 (177)
T d1kmqa_           8 VGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD   87 (177)
T ss_dssp             EESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhcccchhH
Confidence            69999999999999999999999999998777888889999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-cE
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-GF  147 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~  147 (157)
                      ||+.+..|+..+.......              +|++|||||+|+...            +.++.+++..+++.++. +|
T Consensus        88 Sf~~~~~~~~~~~~~~~~~--------------~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~  153 (177)
T d1kmqa_          88 SLENIPEKWTPEVKHFCPN--------------VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY  153 (177)
T ss_dssp             HHHHHHHTHHHHHHHHSTT--------------SCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHHHHHHhCCC--------------CceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEE
Confidence            9999988888877766443              999999999998632            45888999999999995 99


Q ss_pred             EEeccccCCC
Q psy1873         148 VEASAKQDDY  157 (157)
Q Consensus       148 ~e~Sa~~~~~  157 (157)
                      +||||++|+|
T Consensus       154 ~E~SAkt~~g  163 (177)
T d1kmqa_         154 MECSAKTKDG  163 (177)
T ss_dssp             EECCTTTCTT
T ss_pred             EEecCCCCcC
Confidence            9999999987

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7e-37  Score=201.88  Aligned_cols=143  Identities=30%  Similarity=0.417  Sum_probs=132.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||++||++++|...+.+|.+..+ ......++....+.+||++|++++..+++.++++++++|+|||++++
T Consensus        10 vG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~   89 (167)
T d1z0ja1          10 LGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKE   89 (167)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEEEeeechh
Confidence            69999999999999999999999999988666 67777888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++|+.+..|+..+.......              .|++|||||+|+.+.+.+..++++.+++.++++|+||||++|+|
T Consensus        90 ~s~~~~~~~~~~~~~~~~~~--------------~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~n  153 (167)
T d1z0ja1          90 ETFSTLKNWVRELRQHGPPS--------------IVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAIN  153 (167)
T ss_dssp             HHHHHHHHHHHHHHHHSCTT--------------SEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred             hhhhhHHHhhhhhhhccCCc--------------ceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCC
Confidence            99999999998877665443              99999999999988889999999999999999999999999987

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-37  Score=205.10  Aligned_cols=143  Identities=31%  Similarity=0.474  Sum_probs=132.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|+++.+...+.++.+..+ .+.+.+++..+.+.+||++|++.+..+++.++++++++++|||++++
T Consensus        11 vG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~   90 (171)
T d2ew1a1          11 IGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCE   90 (171)
T ss_dssp             EESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEeeecccc
Confidence            69999999999999999999888888887555 77888999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              +|++|||||+|+.+.+++..++++.+++.++++|++|||++|+|
T Consensus        91 ~s~~~~~~~~~~i~~~~~~~--------------~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~g  154 (171)
T d2ew1a1          91 ESFRCLPEWLREIEQYASNK--------------VITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDN  154 (171)
T ss_dssp             HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred             hhhhhhhhhhhhhccccccc--------------ccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCC
Confidence            99999999999887765443              89999999999988888999999999999999999999999987

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-37  Score=202.25  Aligned_cols=143  Identities=37%  Similarity=0.513  Sum_probs=132.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||++||+++++...+.++++..+ ......++..+.+.+||++|++.+..+++.++++++++++|||++++
T Consensus         6 vG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   85 (164)
T d1yzqa1           6 LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNV   85 (164)
T ss_dssp             EESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEeeccccc
Confidence            69999999999999999999999999988544 67777888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              +|++|||||+|+.+.+++..+++..+++.++++|+||||++|+|
T Consensus        86 ~s~~~i~~~~~~~~~~~~~~--------------~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~  149 (164)
T d1yzqa1          86 NSFQQTTKWIDDVRTERGSD--------------VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN  149 (164)
T ss_dssp             HHHHTHHHHHHHHHHHHTTS--------------SEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred             cchhhhHhhHHHHHHhcCCC--------------ceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcC
Confidence            99999999999988766543              99999999999988888999999999999999999999999987

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.4e-37  Score=202.44  Aligned_cols=143  Identities=34%  Similarity=0.516  Sum_probs=130.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccce-EEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENT-FVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|+++.+...+.++.+.. +...+...+..+.+++||++|++++..+++.+++++|++|+|||++++
T Consensus        11 vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~   90 (169)
T d3raba_          11 IGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE   90 (169)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETTCH
T ss_pred             ECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECccc
Confidence            6999999999999999999998888888844 477788889999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++++.+..|+..+.......              .|++|+|||+|+...+.++.++++.+++.++++|+||||++|+|
T Consensus        91 ~s~~~~~~~~~~~~~~~~~~--------------~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~g  154 (169)
T d3raba_          91 ESFNAVQDWSTQIKTYSWDN--------------AQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNIN  154 (169)
T ss_dssp             HHHHTHHHHHHHHHHHCCSC--------------CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred             hhhhhhhhhhhhhhcccCCc--------------ceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcC
Confidence            99999999988776554333              99999999999988889999999999999999999999999986

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-37  Score=201.73  Aligned_cols=143  Identities=31%  Similarity=0.489  Sum_probs=131.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||++||+++.+...+.++....+ .....+++..+.+++||++|++++..++..+++++|++|+|||++++
T Consensus        10 vG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~   89 (166)
T d1z0fa1          10 IGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR   89 (166)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEeccCch
Confidence            69999999999999999999988888877555 77788999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++++.+..|+..+.......              .|++++|||+|+...+.+..++++.+++.++++|+||||++|+|
T Consensus        90 ~s~~~~~~~~~~~~~~~~~~--------------~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~  153 (166)
T d1z0fa1          90 STYNHLSSWLTDARNLTNPN--------------TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN  153 (166)
T ss_dssp             HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred             HHHHHHHHHHHHHHhhcccc--------------ceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            99999999998887665443              99999999999988888999999999999999999999999987

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-36  Score=199.34  Aligned_cols=143  Identities=31%  Similarity=0.484  Sum_probs=132.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|+.+++...+.+|.+..+ ......++..+.+.+||++|++.+..+++.++++++++++|||++++
T Consensus        12 vG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   91 (170)
T d1r2qa_          12 LGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE   91 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEEeccchh
Confidence            69999999999999999999999999988665 66777888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++++.+..|+..+.......              +|++|||||+|+...++++.++++.+++.++++|+||||++|+|
T Consensus        92 ~s~~~~~~~~~~~~~~~~~~--------------~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~  155 (170)
T d1r2qa_          92 ESFARAKNWVKELQRQASPN--------------IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN  155 (170)
T ss_dssp             HHHHHHHHHHHHHHHHSCTT--------------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred             hHHHHHHHHhhhhhhccCCC--------------ceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCC
Confidence            99999999999987765443              99999999999988889999999999999999999999999986

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-36  Score=202.49  Aligned_cols=143  Identities=28%  Similarity=0.442  Sum_probs=129.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||++||+++.|...+.+|++..+.....++++.+.+++||++|+++|..+++.+++++|++++|||+++++
T Consensus         9 lG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   88 (191)
T d2ngra_           9 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS   88 (191)
T ss_dssp             EESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecccccchHH
Confidence            69999999999999999999999999999877888889999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhC-CcE
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM------------ERMISYDEGKRLAESWK-AGF  147 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~  147 (157)
                      ||+++..|+..........              +|+++||||+|+.+            .+.+..++++.+++.++ ++|
T Consensus        89 Sf~~~~~~~~~~~~~~~~~--------------~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  154 (191)
T d2ngra_          89 SFENVKEKWVPEITHHCPK--------------TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKY  154 (191)
T ss_dssp             HHHHHHHTHHHHHHHHCTT--------------CCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCE
T ss_pred             HHHHHHHHHHHHHhhcCCC--------------CceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeE
Confidence            9999988887777665433              99999999999853            34688999999999875 699


Q ss_pred             EEeccccCCC
Q psy1873         148 VEASAKQDDY  157 (157)
Q Consensus       148 ~e~Sa~~~~~  157 (157)
                      +||||++|+|
T Consensus       155 ~e~SAk~~~~  164 (191)
T d2ngra_         155 VECSALTQKG  164 (191)
T ss_dssp             EECCTTTCTT
T ss_pred             EEEeCCCCcC
Confidence            9999999986

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-36  Score=202.47  Aligned_cols=143  Identities=24%  Similarity=0.391  Sum_probs=129.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||++||+.+.|...+.||++..+.....+++..+.+++||++|++.+..+++.+++++|++|+|||+++++
T Consensus         8 iG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   87 (179)
T d1m7ba_           8 VGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE   87 (179)
T ss_dssp             EESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheeeecccCC
Confidence            69999999999999999999999999998878778888999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-cE
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM------------ERMISYDEGKRLAESWKA-GF  147 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~  147 (157)
                      ||+.+..|+..........              +|+++||||+|+..            .+.++.+++..++++++. +|
T Consensus        88 Sf~~~~~~~~~~~~~~~~~--------------~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y  153 (179)
T d1m7ba_          88 TLDSVLKKWKGEIQEFCPN--------------TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY  153 (179)
T ss_dssp             HHHHHHHTHHHHHHHHCTT--------------CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred             CHHHHHHHHHHHHhccCCc--------------ceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeE
Confidence            9999998888877665543              99999999999853            456889999999999985 99


Q ss_pred             EEeccccCCC
Q psy1873         148 VEASAKQDDY  157 (157)
Q Consensus       148 ~e~Sa~~~~~  157 (157)
                      +||||++|+|
T Consensus       154 ~E~SAk~~~n  163 (179)
T d1m7ba_         154 IECSALQSEN  163 (179)
T ss_dssp             EECBTTTBHH
T ss_pred             EEEeCCCCCc
Confidence            9999999863

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-36  Score=197.09  Aligned_cols=143  Identities=38%  Similarity=0.622  Sum_probs=133.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|+++.+...+.++++..+...+..++..+.+.+||++|++.+...++.+++.++++++|||++++.
T Consensus         9 iG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~   88 (166)
T d1ctqa_           9 VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK   88 (166)
T ss_dssp             EESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccceeecccccc
Confidence            69999999999999999999999999999888888889999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +|+.+..|+..+........             +|+++||||+|+. .+.+..++++.+++.++++|+||||++|+|
T Consensus        89 s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~g  151 (166)
T d1ctqa_          89 SFEDIHQYREQIKRVKDSDD-------------VPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQG  151 (166)
T ss_dssp             HHHTHHHHHHHHHHHHTCSS-------------CCEEEEEECTTCS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred             cHHHHHHHHHHHHHhcCCCC-------------CeEEEEecccccc-cccccHHHHHHHHHHhCCeEEEEcCCCCcC
Confidence            99999999999988776544             9999999999985 467778999999999999999999999987

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-35  Score=196.15  Aligned_cols=143  Identities=32%  Similarity=0.525  Sum_probs=131.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|+.+.|...+.+|.+..+ .+.+..+++.+.+.+||++|++.+..+++.+++++|++|+|||++++
T Consensus         9 vG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   88 (170)
T d1ek0a_           9 LGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKP   88 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEEEeCCcc
Confidence            69999999999999999999999999998666 67888899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC---CceecHHHHHHHHHHhCCcEEEeccccCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM---ERMISYDEGKRLAESWKAGFVEASAKQDD  156 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  156 (157)
                      ++|+.+..|+..+.......              .|+++++||+|+.+   .+++..++++.+++.++++|+||||++|+
T Consensus        89 ~s~~~~~~~~~~~~~~~~~~--------------~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~  154 (170)
T d1ek0a_          89 QSFIKARHWVKELHEQASKD--------------IIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGE  154 (170)
T ss_dssp             HHHHHHHHHHHHHHHHSCTT--------------CEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred             cchhhhhhhhhhhccccccc--------------cceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCc
Confidence            99999999998877665543              89999999999853   47889999999999999999999999998


Q ss_pred             C
Q psy1873         157 Y  157 (157)
Q Consensus       157 ~  157 (157)
                      |
T Consensus       155 g  155 (170)
T d1ek0a_         155 N  155 (170)
T ss_dssp             T
T ss_pred             C
Confidence            6

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=196.92  Aligned_cols=143  Identities=30%  Similarity=0.436  Sum_probs=126.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccce-EEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENT-FVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|+++++...+.++.... +.......+..+.+.+||++|++.+..+++.+++.+|++|+|||++++
T Consensus         9 vG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~   88 (173)
T d2a5ja1           9 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR   88 (173)
T ss_dssp             ESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCH
T ss_pred             ECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEEeecCh
Confidence            6999999999999999999988887777644 467777888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++|+.+..|+..+.......              +|++|||||+|+...+.+..+++..+++.++++|+||||++|.|
T Consensus        89 ~sf~~~~~~~~~~~~~~~~~--------------~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~  152 (173)
T d2a5ja1          89 ETFNHLTSWLEDARQHSSSN--------------MVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACN  152 (173)
T ss_dssp             HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred             HHHHhHHHHHHHHHHhCCCC--------------CeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCC
Confidence            99999999999987765433              99999999999988888999999999999999999999999987

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-36  Score=199.22  Aligned_cols=143  Identities=27%  Similarity=0.406  Sum_probs=128.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|+++.|...+.+|+++.+...+..++..+.+.+||++|++.+..+++.++++++++|+|||+++++
T Consensus        11 iG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   90 (183)
T d1mh1a_          11 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPA   90 (183)
T ss_dssp             ECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeeeeeccchHH
Confidence            69999999999999999999999999999888888889999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhC-CcE
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWK-AGF  147 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~  147 (157)
                      ||+.+..|+..........              +|++|||||+|+...            +.+...++..+++.++ ++|
T Consensus        91 sf~~i~~~~~~~~~~~~~~--------------~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  156 (183)
T d1mh1a_          91 SFENVRAKWYPEVRHHCPN--------------TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  156 (183)
T ss_dssp             HHHHHHHTHHHHHHHHSTT--------------SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHHHHHHhCCC--------------CcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceE
Confidence            9999988777776655433              999999999998543            3456778899999988 699


Q ss_pred             EEeccccCCC
Q psy1873         148 VEASAKQDDY  157 (157)
Q Consensus       148 ~e~Sa~~~~~  157 (157)
                      +||||++|+|
T Consensus       157 ~E~SAk~~~~  166 (183)
T d1mh1a_         157 LECSALTQRG  166 (183)
T ss_dssp             EECCTTTCTT
T ss_pred             EEcCCCCCcC
Confidence            9999999987

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-35  Score=198.09  Aligned_cols=143  Identities=33%  Similarity=0.556  Sum_probs=132.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|+.+.+...+.+|.+..+ ...+.+++..+.+.+||++|++++..+++.++++++++|+|||++++
T Consensus        12 vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~~   91 (194)
T d2bcgy1          12 IGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQ   91 (194)
T ss_dssp             EESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCH
T ss_pred             ECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCcch
Confidence            69999999999999999999999999988665 67788999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++++.+..|+..+.......              +|++|||||+|+.+.+.+..+++..++...+++|+||||++|+|
T Consensus        92 ~s~~~~~~~~~~~~~~~~~~--------------~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~g  155 (194)
T d2bcgy1          92 ESFNGVKMWLQEIDRYATST--------------VLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN  155 (194)
T ss_dssp             HHHHHHHHHHHHHHHHSCTT--------------CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTT
T ss_pred             hhhhhHhhhhhhhhhcccCC--------------ceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCcc
Confidence            99999999999887665433              99999999999998899999999999999999999999999986

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-35  Score=195.06  Aligned_cols=143  Identities=28%  Similarity=0.475  Sum_probs=129.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcC-chhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSI-FPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~ilv~d~~~   78 (157)
                      ||++|||||||+++|+.+++...+.++.+..+ .....+......+.+||++|...+.. .++.+++++|++|+|||+++
T Consensus         8 iG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~   87 (165)
T d1z06a1           8 IGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTN   87 (165)
T ss_dssp             ECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTC
T ss_pred             ECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEEEEEeeh
Confidence            69999999999999999999988888888555 67778899999999999999887764 57889999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCC
Q psy1873          79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD  156 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  156 (157)
                      +++|+.+..|+..+........             +|++|||||+|+.+.++++.++++.+++.++++|+|||||+|.
T Consensus        88 ~~s~~~~~~~~~~i~~~~~~~~-------------~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~  152 (165)
T d1z06a1          88 MASFHSLPAWIEECKQHLLAND-------------IPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPN  152 (165)
T ss_dssp             HHHHHTHHHHHHHHHHHCCCSC-------------CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGG
T ss_pred             hhhhhhhhhhhHHHHhhccCCC-------------CeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCC
Confidence            9999999999999987765444             9999999999998888999999999999999999999999865

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-37  Score=201.91  Aligned_cols=140  Identities=21%  Similarity=0.348  Sum_probs=121.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|+++.+...+.+|++..+ .+.+..++..+.+.+||++|+..+..+++.++++++++++|||++++
T Consensus         9 vG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   88 (170)
T d1i2ma_           9 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR   88 (170)
T ss_dssp             EECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSG
T ss_pred             ECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhccccccc
Confidence            69999999999999999999999999998555 67777889999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +||+.+..|+..+......               +|+++||||+|+...+..  .++..++..++++|+||||++|+|
T Consensus        89 ~Sf~~~~~~~~~~~~~~~~---------------~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~  149 (170)
T d1i2ma_          89 VTYKNVPNWHRDLVRVCEN---------------IPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYN  149 (170)
T ss_dssp             GGGTTHHHHHHHHHHHHCS---------------CCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBT
T ss_pred             cccchhHHHHHHHhhccCC---------------Cceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCC
Confidence            9999999999998876542               999999999999665433  456788889999999999999986

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-35  Score=195.51  Aligned_cols=143  Identities=31%  Similarity=0.450  Sum_probs=128.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccce-EEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENT-FVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|+++.+...+.++.+.. +...+.+++..+.+.+||++|+++|..++..++++++++|+|||++++
T Consensus        10 vG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~   89 (175)
T d2f9la1          10 IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKH   89 (175)
T ss_dssp             ESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEEEECCCc
Confidence            6999999999999999999988887777744 477788999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +||+.+..|+..+.......              +|++|||||+|+.+.+.........++..++.+|+||||++|+|
T Consensus        90 ~S~~~~~~~~~~i~~~~~~~--------------~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~  153 (175)
T d2f9la1          90 LTYENVERWLKELRDHADSN--------------IVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTN  153 (175)
T ss_dssp             HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred             ccchhHHHHHHHHHHhcCCC--------------CcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcC
Confidence            99999999999987766533              99999999999988778888888999999999999999999987

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-35  Score=197.02  Aligned_cols=143  Identities=29%  Similarity=0.492  Sum_probs=102.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|+.+.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..+++.++++++++|+|||++++
T Consensus        12 vG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~   91 (173)
T d2fu5c1          12 IGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNE   91 (173)
T ss_dssp             ECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEEEECCCh
Confidence            69999999999999999999888888888555 78888999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+.......              .|+++|+||+|+...+.....++..++...+++|+||||++|+|
T Consensus        92 ~s~~~~~~~~~~~~~~~~~~--------------~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~g  155 (173)
T d2fu5c1          92 KSFDNIRNWIRNIEEHASAD--------------VEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN  155 (173)
T ss_dssp             HHHHHHHHHHHHHHHHSCTT--------------CEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CC
T ss_pred             hhHHHHHHHHHHhhhhccCC--------------ceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCC
Confidence            99999999999886655443              99999999999988888888899999999999999999999987

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-35  Score=195.85  Aligned_cols=143  Identities=30%  Similarity=0.465  Sum_probs=131.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|+.+++...+.++.+..+ ...+..++..+.+.+||++|++++..+++.++++++++|+|||++++
T Consensus        11 vG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   90 (174)
T d2bmea1          11 IGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR   90 (174)
T ss_dssp             EESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEecccc
Confidence            69999999999999999999988888888655 66677889999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++++.+..|+..+.......              +|+++||||+|+...+++...++..+++.++++|+||||++|+|
T Consensus        91 ~s~~~~~~~~~~~~~~~~~~--------------~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~g  154 (174)
T d2bmea1          91 ETYNALTNWLTDARMLASQN--------------IVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEN  154 (174)
T ss_dssp             HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred             hhHHHHhhhhcccccccCCc--------------eEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcC
Confidence            99999999999988766543              99999999999988888999999999999999999999999987

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-35  Score=192.18  Aligned_cols=143  Identities=30%  Similarity=0.523  Sum_probs=121.2

Q ss_pred             CCCCCCChhhhHhhhhccccccc-ccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDS-YDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   78 (157)
                      ||+++||||||+++|+.+.+... +.++++..+ ...+..++..+.+.+||++|++++..+++.+++++|++++|||+++
T Consensus        12 vG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~   91 (170)
T d2g6ba1          12 VGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTN   91 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTC
T ss_pred             ECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEEEecCCc
Confidence            69999999999999999988544 455666554 6678889999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++++.+..|+..+.......              .|+++|+||+|+...+.++.+++..+++.++++|+||||++|+|
T Consensus        92 ~~s~~~~~~~~~~~~~~~~~~--------------~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~g  156 (170)
T d2g6ba1          92 KASFDNIQAWLTEIHEYAQHD--------------VALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLN  156 (170)
T ss_dssp             HHHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred             ccchhhhhhhhhhhhhccCCC--------------ceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcC
Confidence            999999999998887776543              89999999999988889999999999999999999999999987

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-35  Score=194.28  Aligned_cols=142  Identities=30%  Similarity=0.402  Sum_probs=121.0

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCCcc-ceEEEEEEECCeEEEEEEEeCCC---CccCcCchhhhccCCCEEEEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAG---QDEYSIFPAQYSMDIHGYVLVYS   75 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g---~~~~~~~~~~~~~~~~~~ilv~d   75 (157)
                      ||++|||||||+++|+...+. ....++++ +.+.+.+.++++.+.+.+||+++   ++++  ++..+++++|++|+|||
T Consensus         9 vG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~~ilvfd   86 (172)
T d2g3ya1           9 IGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYS   86 (172)
T ss_dssp             ECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSEEEEEEE
T ss_pred             ECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccceeeeeec
Confidence            699999999999999987664 33445555 56688889999999999999764   4444  67788999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccC
Q psy1873          76 ITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD  155 (157)
Q Consensus        76 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  155 (157)
                      ++++++++.+..|+..+........             +|++|||||+|+.+.++++.++++.++..++++|+||||++|
T Consensus        87 ~t~~~s~~~~~~~~~~i~~~~~~~~-------------~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g  153 (172)
T d2g3ya1          87 ITDRASFEKASELRIQLRRARQTED-------------IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQ  153 (172)
T ss_dssp             TTCHHHHHHHHHHHHHHHTSGGGTT-------------SCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred             ccccchhhhhhhhhhhhhhccccCC-------------ceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCC
Confidence            9999999999999998876654433             999999999999888899999999999999999999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       154 ~~  155 (172)
T d2g3ya1         154 HN  155 (172)
T ss_dssp             BS
T ss_pred             cC
Confidence            87

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-36  Score=200.63  Aligned_cols=144  Identities=28%  Similarity=0.429  Sum_probs=126.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECC----------eEEEEEEEeCCCCccCcCchhhhccCCCE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNN----------QDYDLKLVDTAGQDEYSIFPAQYSMDIHG   69 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~----------~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   69 (157)
                      ||++|||||||+++|+++++...+.++.+..+ ...+.+++          ..+.+.+||++|++++..+++.+++++++
T Consensus        11 vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~~~~~~~   90 (186)
T d2f7sa1          11 LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMG   90 (186)
T ss_dssp             ESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCE
T ss_pred             ECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHHHhcCCE
Confidence            69999999999999999999888888877555 55555443          35789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEE
Q psy1873          70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVE  149 (157)
Q Consensus        70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e  149 (157)
                      +|+|||++++.+++.+..|+..+........             +|++|||||+|+...+.++.+++..+++.++++|+|
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-------------~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e  157 (186)
T d2f7sa1          91 FLLMFDLTSQQSFLNVRNWMSQLQANAYCEN-------------PDIVLIGNKADLPDQREVNERQARELADKYGIPYFE  157 (186)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHTCCCCCTTTC-------------CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEE
T ss_pred             EEEEEeccccccceeeeeccchhhhhccCCC-------------ceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEE
Confidence            9999999999999999999887765544333             899999999999888899999999999999999999


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      |||++|+|
T Consensus       158 ~Sak~~~~  165 (186)
T d2f7sa1         158 TSAATGQN  165 (186)
T ss_dssp             EBTTTTBT
T ss_pred             EeCCCCCC
Confidence            99999987

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=187.49  Aligned_cols=146  Identities=25%  Similarity=0.370  Sum_probs=126.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|+.+++...+.+|++..+ ......++..+.+.+||++|+......++.++..+++++++||++++
T Consensus        12 vG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~   91 (174)
T d1wmsa_          12 LGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDS   91 (174)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCH
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEEEEeeecc
Confidence            69999999999999999999999999988665 77778899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK-AGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~  157 (157)
                      .|++.+..|+.++........          ...+|+++||||+|+. ++.+..++++.++++.+ ++|+||||++|+|
T Consensus        92 ~s~~~~~~~~~~i~~~~~~~~----------~~~~piilVgnK~Dl~-~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~g  159 (174)
T d1wmsa_          92 QSFQNLSNWKKEFIYYADVKE----------PESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATN  159 (174)
T ss_dssp             HHHHTHHHHHHHHHHHHTCSC----------TTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTT
T ss_pred             cccchhhhHHHHHHHHhcccc----------CCCceEEEeccccchh-hccCcHHHHHHHHHHcCCCeEEEEcCCCCcC
Confidence            999999999998877654321          2348999999999985 46889999999999875 7999999999987

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-34  Score=188.81  Aligned_cols=142  Identities=34%  Similarity=0.591  Sum_probs=123.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      ||++|||||||+++|+.+++...+.+|++..+ ...+.+++..+.+.+||++|++.+..+++.++++++++|+|||++++
T Consensus         8 vG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   87 (166)
T d1g16a_           8 IGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDE   87 (166)
T ss_dssp             EESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCc
Confidence            69999999999999999999999999998655 68888899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++++.+..|+..+.......              .|++++++|.|+. .+....+++..++..++++|++|||++|+|
T Consensus        88 ~s~~~~~~~~~~~~~~~~~~--------------~~~i~~~~k~d~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  150 (166)
T d1g16a_          88 RTFTNIKQWFKTVNEHANDE--------------AQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDN  150 (166)
T ss_dssp             HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBS
T ss_pred             cCHHHHHhhhhhhhccccCc--------------ceeeeecchhhhh-hhhhhHHHHHHHHHhcCCeEEEECCCCCCC
Confidence            99999999988887776544              8999999999974 456778899999999999999999999987

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-33  Score=187.89  Aligned_cols=143  Identities=33%  Similarity=0.473  Sum_probs=129.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..+++.++++++++|+|||++++
T Consensus        13 vG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   92 (177)
T d1x3sa1          13 IGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRR   92 (177)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCc
Confidence            69999999999999999999888888877554 66778899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++++.+..|+.++........             .|+++++||.|. ..+.+...+++.+++.++++|+||||++|+|
T Consensus        93 ~s~~~~~~~~~~i~~~~~~~~-------------~~i~~~~nk~d~-~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~g  156 (177)
T d1x3sa1          93 DTFVKLDNWLNELETYCTRND-------------IVNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDG  156 (177)
T ss_dssp             HHHHTHHHHHHHHTTCCSCSC-------------CEEEEEEECTTS-SSCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred             cccccchhhhhhhcccccccc-------------eeeEEEeecccc-ccccccHHHHHHHHHHCCCEEEEEeCCCCCC
Confidence            999999999998876554443             999999999996 4578889999999999999999999999987

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-33  Score=187.61  Aligned_cols=147  Identities=27%  Similarity=0.411  Sum_probs=112.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEE-ECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTR-MNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS   78 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~-~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   78 (157)
                      ||++|||||||+++|+++++...+.++.+... ..... .+.....+.+||++|++++..++..+++.++++++|||+++
T Consensus         8 vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   87 (175)
T d1ky3a_           8 LGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTN   87 (175)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTC
T ss_pred             ECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEEEeeccc
Confidence            69999999999999999999888888877444 33333 34456778999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC-ceecHHHHHHHHHHhC-CcEEEeccccCC
Q psy1873          79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME-RMISYDEGKRLAESWK-AGFVEASAKQDD  156 (157)
Q Consensus        79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~  156 (157)
                      +.||+.+..|+.++........          ...+|++|+|||+|+.+. +.++.++++.+++.++ ++|+||||++|+
T Consensus        88 ~~s~~~~~~~~~~i~~~~~~~~----------~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~  157 (175)
T d1ky3a_          88 ASSFENIKSWRDEFLVHANVNS----------PETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI  157 (175)
T ss_dssp             HHHHHTHHHHHHHHHHHHCCSC----------TTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred             ccccchhhhcchhhhhhhhhcc----------cccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCc
Confidence            9999999999999887654321          223899999999999765 4478889999999987 699999999998


Q ss_pred             C
Q psy1873         157 Y  157 (157)
Q Consensus       157 ~  157 (157)
                      |
T Consensus       158 g  158 (175)
T d1ky3a_         158 N  158 (175)
T ss_dssp             S
T ss_pred             C
Confidence            7

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.1e-33  Score=186.28  Aligned_cols=146  Identities=27%  Similarity=0.425  Sum_probs=126.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++++...+.+|++..+ .......+..+.+.+||++|+..+..+++.++..++++++|||++++
T Consensus         8 vG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~   87 (184)
T d1vg8a_           8 LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAP   87 (184)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCH
T ss_pred             ECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEeecccch
Confidence            69999999999999999999999999998555 77778888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-hCCcEEEeccccCCC
Q psy1873          80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES-WKAGFVEASAKQDDY  157 (157)
Q Consensus        80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~  157 (157)
                      .+++.+..|+..+........          ...+|++|||||+|+.+ +.+..++...++.. .+++|+||||++|+|
T Consensus        88 ~~~~~~~~~~~~i~~~~~~~~----------~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~g  155 (184)
T d1vg8a_          88 NTFKTLDSWRDEFLIQASPRD----------PENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAIN  155 (184)
T ss_dssp             HHHHTHHHHHHHHHHHHCCSS----------GGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBS
T ss_pred             hhhhcchhhHHHHHHHhcccc----------ccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcC
Confidence            999999999998877654321          12389999999999865 55666777777755 468999999999986

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-32  Score=181.80  Aligned_cols=140  Identities=21%  Similarity=0.331  Sum_probs=117.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|+.+.+.. +.++.+..+...+.++++.+.+.+||++|+.++     .+++++|++|+|||+++++
T Consensus        11 lG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilVfd~~~~~   84 (175)
T d2bmja1          11 LGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDEN   84 (175)
T ss_dssp             ECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEEEETTCHH
T ss_pred             ECCCCCCHHHHHHHHHhCCCCC-cCCccceeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEEEeecccch
Confidence            6999999999999999998854 457777778888899999999999999998764     4788999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC--CCceecHHHHHHHHHH-hCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH--MERMISYDEGKRLAES-WKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~--~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~  157 (157)
                      ||+.+..|+..+.......           ...+|+++||||.|+.  ..+.++..+++.++.. ++++|+||||++|.|
T Consensus        85 Sf~~~~~~~~~i~~~~~~~-----------~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~  153 (175)
T d2bmja1          85 SFQAVSRLHGQLSSLRGEG-----------RGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLN  153 (175)
T ss_dssp             HHHHHHHHHHHHHHHCC-------------CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBT
T ss_pred             hhhhhHHHHHHHHHHhhcc-----------cCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcC
Confidence            9999999998886654322           1238999999988874  4567888899999765 468999999999986

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=5.8e-32  Score=177.59  Aligned_cols=141  Identities=21%  Similarity=0.289  Sum_probs=114.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|..+.+...+.||++..+. .+..++  +.+.+||++|++.+...+..++..++++++|||+++++
T Consensus         8 ~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   84 (164)
T d1zd9a1           8 VGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE   84 (164)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGG
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCcccccceeeee-eeeeee--EEEEEeeccccccccccccccccccchhhccccccccc
Confidence            699999999999999999998888899885442 334444  77899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce---ecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM---ISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      +++.+..|+..+........             +|++|||||.|+.....   +.......++...+++++|+||++|+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~-------------~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~g  151 (164)
T d1zd9a1          85 KIEASKNELHNLLDKPQLQG-------------IPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDN  151 (164)
T ss_dssp             GHHHHHHHHHHHHTCGGGTT-------------CCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred             ccchhhhhhhhhhhhhcccC-------------CcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcC
Confidence            99999999998887765444             99999999999864322   111112222334457899999999987

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=3.5e-30  Score=169.02  Aligned_cols=138  Identities=18%  Similarity=0.227  Sum_probs=108.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|.+..+. .+.+|.+.. ...+..  ..+.+.+||++|++.++..++.+++.+++++++||+++..
T Consensus         8 vG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~-~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~   83 (165)
T d1ksha_           8 LGLDNAGKTTILKKFNGEDVD-TISPTLGFN-IKTLEH--RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQ   83 (165)
T ss_dssp             ECSTTSSHHHHHHHHTTCCCS-SCCCCSSEE-EEEEEE--TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGG
T ss_pred             ECCCCCCHHHHHHHHcCCCCC-cccceEeee-eeeccc--cccceeeeecCcchhhhhHHHhhhhhhhcceeeeecccch
Confidence            699999999999999987664 456777633 233344  4478899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA-----ESWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~  155 (157)
                      ++..+..++...+.......             +|++||+||+|+.+...+.  +.....     ...++++++|||++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~-------------~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~g  148 (165)
T d1ksha_          84 RMQDCQRELQSLLVEERLAG-------------ATLLIFANKQDLPGALSCN--AIQEALELDSIRSHHWRIQGCSAVTG  148 (165)
T ss_dssp             GHHHHHHHHHHHHTCGGGTT-------------CEEEEEEECTTSTTCCCHH--HHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             hHHHHHHhhhhhhhhcccCC-------------CceEEEEeccccccccCHH--HHHHHHHhhhhhcCCCEEEEEECCCC
Confidence            99999888887776554333             9999999999996544433  222221     222468999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       149 ~g  150 (165)
T d1ksha_         149 ED  150 (165)
T ss_dssp             TT
T ss_pred             CC
Confidence            87

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.96  E-value=4e-31  Score=176.23  Aligned_cols=138  Identities=19%  Similarity=0.229  Sum_probs=103.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|..+.+... .+|.+... ......  .+.+.+||++|++.+..++..++.+++++++|||++++.
T Consensus        23 vG~~~vGKTsLi~~l~~~~~~~~-~~t~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~   98 (182)
T d1moza_          23 LGLDGAGKTTILYRLQIGEVVTT-KPTIGFNV-ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKD   98 (182)
T ss_dssp             EEETTSSHHHHHHHTCCSEEEEE-CSSTTCCE-EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTT
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcc-ccccceEE-EEEeeC--CEEEEEEecccccccchhHHhhhccceeEEEEeeecccc
Confidence            69999999999999998877543 46666332 222333  477899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHH-----HHHHHhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGK-----RLAESWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~e~Sa~~~  155 (157)
                      ++..+..|+..++.......             .|++|+|||+|+.+.  ++..+..     ..+...+++++||||++|
T Consensus        99 s~~~~~~~l~~~~~~~~~~~-------------~piliv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g  163 (182)
T d1moza_          99 RMSTASKELHLMLQEEELQD-------------AALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKG  163 (182)
T ss_dssp             THHHHHHHHHHHTTSSTTSS-------------CEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGT
T ss_pred             cchhHHHHHHHHHHhhccCC-------------cceEEEEEeeccccc--cCHHHHHHHHHHHHHhhCCCEEEEEECCCC
Confidence            99999999887766544333             999999999998542  2223222     233444578999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       164 ~g  165 (182)
T d1moza_         164 EG  165 (182)
T ss_dssp             BT
T ss_pred             CC
Confidence            87

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=1.5e-30  Score=172.16  Aligned_cols=140  Identities=18%  Similarity=0.242  Sum_probs=107.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++.+.... +|.+..+ .....  ..+.+.+||++|++.++..+..+++.++++|+|||+++.+
T Consensus        18 vG~~~vGKTSli~rl~~~~~~~~~-~t~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~   93 (173)
T d1e0sa_          18 LGLDAAGKTTILYKLKLGQSVTTI-PTVGFNV-ETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD   93 (173)
T ss_dssp             EEETTSSHHHHHHHTTCCCCEEEE-EETTEEE-EEEEE--TTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCGG
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCcc-ceeeeeE-EEeec--cceeeEEecCCCcchhhhHHHhhhcccceEEEEEecccch
Confidence            699999999999999988765433 4444322 22233  4478899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce---ecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM---ISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++..+..|+..++.......             .|++|++||+|+.+...   +....+...+...++.++||||++|+|
T Consensus        94 ~~~~~~~~l~~~~~~~~~~~-------------~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~g  160 (173)
T d1e0sa_          94 RIDEARQELHRIINDREMRD-------------AIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG  160 (173)
T ss_dssp             GHHHHHHHHHHHHTSGGGTT-------------CEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred             hHHHHHHHHHHHhhhccccc-------------ceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcC
Confidence            99999999888876654433             99999999999964322   222222223344467899999999987

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.96  E-value=6e-30  Score=169.49  Aligned_cols=138  Identities=20%  Similarity=0.235  Sum_probs=107.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|.++.+.... ++.+.. ...+...  .+.+.+||++|++.+...+..+++.++++|+|||++++.
T Consensus        22 vG~~~vGKSsLi~~l~~~~~~~~~-~~~~~~-~~~i~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~   97 (176)
T d1fzqa_          22 LGLDNAGKTTLLKQLASEDISHIT-PTQGFN-IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRK   97 (176)
T ss_dssp             EESTTSSHHHHHHHHCCSCCEEEE-EETTEE-EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGG
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcce-eeeeee-EEEeccC--CeeEeEeeccccccchhHHHHHhhccceeEEeecccccc
Confidence            699999999999999998875333 444422 2333443  478899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHH-----HHHHHhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGK-----RLAESWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~e~Sa~~~  155 (157)
                      +++++..|+..+........             +|++|+|||+|+.+....  .+..     .++...++++++|||++|
T Consensus        98 s~~~~~~~~~~~~~~~~~~~-------------~pillv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~SA~tg  162 (176)
T d1fzqa_          98 RFEETGQELTELLEEEKLSC-------------VPVLIFANKQDLLTAAPA--SEIAEGLNLHTIRDRVWQIQSCSALTG  162 (176)
T ss_dssp             GHHHHHHHHHHHTTCGGGTT-------------CCEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             chhhhhhhhhhhhhhhccCC-------------CeEEEEEEeccccccccH--HHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence            99999999888876655444             999999999999654322  2221     122334568999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       163 ~g  164 (176)
T d1fzqa_         163 EG  164 (176)
T ss_dssp             TT
T ss_pred             CC
Confidence            87

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=9.6e-29  Score=160.77  Aligned_cols=140  Identities=15%  Similarity=0.180  Sum_probs=112.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|++|||||||+++|+++++...+..+..    .....+...+.+.+||++|...+...+..++..+++++++||++++.
T Consensus         6 vG~~~vGKSsLi~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~   81 (160)
T d1r8sa_           6 VGLDAAGKTTILYKLKLGEIVTTIPTIGF----NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE   81 (160)
T ss_dssp             ECSTTSSHHHHHHHHHHHCSSCCCCCSSC----CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGG
T ss_pred             ECCCCCCHHHHHHHHhcCCCCccccceee----EEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecChH
Confidence            69999999999999999887655443322    22344556788999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc---eecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER---MISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++..+..|+.++........             .|+++++||.|+.+..   ++.......++...++++++|||++|+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~-------------~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~g  148 (160)
T d1r8sa_          82 RVNEAREELMRMLAEDELRD-------------AVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG  148 (160)
T ss_dssp             GHHHHHHHHHHHHTCGGGTT-------------CEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred             HHHHHHHHHHHHHHhhcccC-------------ceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCC
Confidence            99999999999887666554             9999999999986432   2332333345555678999999999987

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.91  E-value=4.2e-25  Score=145.81  Aligned_cols=138  Identities=19%  Similarity=0.211  Sum_probs=101.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      +|.+|||||||++|+.++++.... ++.+.. .......+  ..+.+||+++++.....+..++..++++++++|.++..
T Consensus        21 vG~~~~GKSsLi~rl~~~~~~~~~-~~~~~~-~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~   96 (177)
T d1zj6a1          21 VGLDNAGKTTILYQFSMNEVVHTS-PTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE   96 (177)
T ss_dssp             EESTTSSHHHHHHHHHTTSCEEEE-CCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTT
T ss_pred             ECCCCCCHHHHHHHHhcCCCCccc-ccccee-EEEEeecc--eEEEEeccccccccccchhhhhccceeeeeeccccccc
Confidence            699999999999999998876433 333322 23333433  67899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHH-----HHHHhCCcEEEeccccC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKR-----LAESWKAGFVEASAKQD  155 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~  155 (157)
                      +++....++...........             .|++||+||+|+.....  ..+...     .+...++++++|||++|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~-------------~p~iiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~tg  161 (177)
T d1zj6a1          97 RISVTREELYKMLAHEDLRK-------------AGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQACCALTG  161 (177)
T ss_dssp             THHHHHHHHHHHHTSGGGTT-------------CEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred             chhhhhhhhhhhhhcccccc-------------eEEEEEEEcccccccCc--HHHHHHHHHHHhhHhcCCEEEEEeCCCC
Confidence            99988877776665555444             99999999999865332  222222     22334578999999999


Q ss_pred             CC
Q psy1873         156 DY  157 (157)
Q Consensus       156 ~~  157 (157)
                      +|
T Consensus       162 ~G  163 (177)
T d1zj6a1         162 EG  163 (177)
T ss_dssp             BT
T ss_pred             CC
Confidence            87

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.7e-23  Score=135.91  Aligned_cols=138  Identities=18%  Similarity=0.262  Sum_probs=105.8

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|+++++. ...+|.+... .  ..........+||+.|...+...++.++..++++++++|.++..
T Consensus         6 iG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~   81 (166)
T d2qtvb1           6 LGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTS-E--ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE   81 (166)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEE-E--EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGG
T ss_pred             ECCCCCCHHHHHHHHhCCCCC-eeeceeeEeE-E--EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchh
Confidence            699999999999999998875 3456665333 2  22233356789999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH------------HHhCCcEE
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA------------ESWKAGFV  148 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~  148 (157)
                      ++.....|+...........             .|++++++|.|+....  ...+.....            ...++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~-------------~~i~i~~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  146 (166)
T d2qtvb1          82 RFDEARVELDALFNIAELKD-------------VPFVILGNKIDAPNAV--SEAELRSALGLLNTTGSQRIEGQRPVEVF  146 (166)
T ss_dssp             GHHHHHHHHHHHHTCTTTTT-------------CCEEEEEECTTSSSCC--CHHHHHHHHTCSSCCC---CCSSCCEEEE
T ss_pred             hhhhhhHHHHhhhhhhccCC-------------ceEEEEeccccccccC--CHHHHHHHhhhhhhhHHHhhcccCCCEEE
Confidence            99999888877766655444             9999999999985432  223222211            22235799


Q ss_pred             EeccccCCC
Q psy1873         149 EASAKQDDY  157 (157)
Q Consensus       149 e~Sa~~~~~  157 (157)
                      +|||++|+|
T Consensus       147 ~~SA~tg~G  155 (166)
T d2qtvb1         147 MCSVVMRNG  155 (166)
T ss_dssp             EEBTTTTBS
T ss_pred             EeeCCCCCC
Confidence            999999987

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.90  E-value=6.2e-24  Score=138.67  Aligned_cols=140  Identities=16%  Similarity=0.228  Sum_probs=107.3

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|+++++.... ++.+.. ......+  .+.+.+||.++...........+..++++++++|+++..
T Consensus        11 vG~~~vGKSSLi~~~~~~~~~~~~-~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (169)
T d1upta_          11 LGLDGAGKTTILYRLQVGEVVTTI-PTIGFN-VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD   86 (169)
T ss_dssp             ECSTTSSHHHHHHHHHHSSCCCCC-CCSSEE-EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCT
T ss_pred             ECCCCCCHHHHHHHHhCCCCccee-ccccee-eeeeccC--ceEEEEeeccccccccccchhhhhhhhhhhhhhhhhhcc
Confidence            699999999999999998886433 444422 2223333  467889999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce---ecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM---ISYDEGKRLAESWKAGFVEASAKQDDY  157 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~e~Sa~~~~~  157 (157)
                      ++.....++...........             .|+++++||.|+.....   +....+..++...+++|++|||++|+|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~-------------~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g  153 (169)
T d1upta_          87 RIGISKSELVAMLEEEELRK-------------AILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTG  153 (169)
T ss_dssp             THHHHHHHHHHHHTCGGGTT-------------CEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTT
T ss_pred             hhhhccchhhhhhhhhcccc-------------ceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence            99988877766665554443             99999999999965432   222223334555568999999999987

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=9.4e-25  Score=146.49  Aligned_cols=107  Identities=18%  Similarity=0.117  Sum_probs=83.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||+.|||||||++||+.+.+.  +.||+|..+.   .+....+.+++||++|++.+...+..+++.+++++++||.++..
T Consensus         8 lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~   82 (200)
T d2bcjq2           8 LGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY---PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYD   82 (200)
T ss_dssp             EESTTSSHHHHHHHHHHHTSS--CCCCCSCEEE---EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGG
T ss_pred             ECCCCCCHHHHHHHHhCCCCC--CCceeeEEEE---EEeccceeeeeccccccccccccccccccccceeeEeeeccchh
Confidence            699999999999999988873  6799985432   33445577899999999999999999999999999999998864


Q ss_pred             h-----------HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873          81 S-----------FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH  126 (157)
Q Consensus        81 s-----------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~  126 (157)
                      +           ++....|.. ++.......             .|+++++||+|+.
T Consensus        83 ~~~~~~~~~~~~~e~~~~~~~-~l~~~~~~~-------------~~~~~v~NK~Dl~  125 (200)
T d2bcjq2          83 QVLVESDNENRMEESKALFRT-IITYPWFQN-------------SSVILFLNKKDLL  125 (200)
T ss_dssp             CBCSSCTTSBHHHHHHHHHHH-HHHCGGGSS-------------SEEEEEEECHHHH
T ss_pred             hhhhhhccccchHHHHHHHHH-HHhhhhccC-------------ccEEEecchhhhh
Confidence            3           334444444 443333233             9999999999974

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=7.7e-24  Score=141.46  Aligned_cols=104  Identities=19%  Similarity=0.187  Sum_probs=80.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||+.|||||||++||....+.+     ++   .....++...+.+++||++|++.+..++..++++++++++|||+++.+
T Consensus         8 lG~~~vGKTsl~~r~~~~~~~t-----~~---~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~   79 (195)
T d1svsa1           8 LGAGESGKSTIVKQMKIIHEAG-----TG---IVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD   79 (195)
T ss_dssp             ECSTTSSHHHHHHHHHHHHSCC-----CS---EEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGG
T ss_pred             ECCCCCCHHHHHHHHhhCCCCC-----cc---EEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccc
Confidence            6999999999999998776543     33   122334445578899999999999999999999999999999999988


Q ss_pred             hHH----------HHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCC
Q psy1873          81 SFE----------VVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDL  125 (157)
Q Consensus        81 s~~----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl  125 (157)
                      ++.          +...++..++.......             .|+++++||+|+
T Consensus        80 ~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~-------------~~~~lv~Nk~d~  121 (195)
T d1svsa1          80 LVLAEDEEMNRMHESMKLFDSICNNKWFTD-------------TSIILFLNKKDL  121 (195)
T ss_dssp             CBCSSCTTSBHHHHHHHHHHHHHTCGGGTT-------------SEEEEEEECHHH
T ss_pred             hHHHHhhhhHHHHHHHHHHHHHhcccccCC-------------CCEEEEeccchh
Confidence            763          33344455544443333             999999999986

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=1.4e-22  Score=133.98  Aligned_cols=136  Identities=22%  Similarity=0.152  Sum_probs=92.1

Q ss_pred             CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchh--------hhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA--------QYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--------~~~~~~~~~   70 (157)
                      +|.+|||||||+++|++....  .....++...........+  ..+.+||++|.........        ..+..+|++
T Consensus        11 vG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~i   88 (178)
T d1wf3a1          11 VGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAV   88 (178)
T ss_dssp             ECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEE
T ss_pred             ECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhcccccccccccccce
Confidence            699999999999999987642  2333343333344445555  4678999999866554332        346789999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEE
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK-AGFVE  149 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e  149 (157)
                      |+|+|++++...  ...++...+......              .|+++|+||+|+....   .+....+.+.++ ..+++
T Consensus        89 l~v~D~~~~~~~--~~~~i~~~l~~~~~~--------------~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~  149 (178)
T d1wf3a1          89 VWVVDLRHPPTP--EDELVARALKPLVGK--------------VPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRM  149 (178)
T ss_dssp             EEEEETTSCCCH--HHHHHHHHHGGGTTT--------------SCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEE
T ss_pred             eeeechhhhhcc--cccchhhheeccccc--------------hhhhhhhcccccccCH---HHHHHHHHhhcccCceEE
Confidence            999999876443  334554555443322              8999999999985532   233444555555 48899


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      +||++|+|
T Consensus       150 iSA~~~~g  157 (178)
T d1wf3a1         150 LSALDERQ  157 (178)
T ss_dssp             CCTTCHHH
T ss_pred             EecCCCCC
Confidence            99999864

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=2.7e-23  Score=139.51  Aligned_cols=107  Identities=20%  Similarity=0.231  Sum_probs=79.5

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||++||   ++...+.||+|... ..+..  +...+++||++|++.+...+..+++++++++++||.++..
T Consensus         8 lG~~~vGKTsll~r~---~f~~~~~pTiG~~~-~~~~~--~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (200)
T d1zcba2           8 LGAGESGKSTFLKQM---RIIHGQDPTKGIHE-YDFEI--KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFD   81 (200)
T ss_dssp             ECSTTSSHHHHHHHH---HHHHSCCCCSSEEE-EEEEE--TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTT
T ss_pred             ECCCCCCHHHHHHHH---hcCCCCCCeeeeEE-EEEee--eeeeeeeecccceeeecccccccccccceeEEEEEcCCcc
Confidence            699999999999999   36667889998432 33344  4577899999999999999999999999999999999864


Q ss_pred             h----------HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873          81 S----------FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH  126 (157)
Q Consensus        81 s----------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~  126 (157)
                      +          ++....++..++.......             +|++|+|||+|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~piilv~NK~Dl~  124 (200)
T d1zcba2          82 QVLMEDRQTNRLTESLNIFETIVNNRVFSN-------------VSIILFLNKTDLL  124 (200)
T ss_dssp             CEETTEEEEEHHHHHHHHHHHHHTCGGGTT-------------SEEEEEEECHHHH
T ss_pred             eeeeecccchhhhHHHHHHHHHhhChhhcC-------------ceEEEEeccchhh
Confidence            3          4566667777766554444             9999999999973

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=3.7e-22  Score=132.12  Aligned_cols=138  Identities=17%  Similarity=0.062  Sum_probs=88.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccc--cCCccceEEEEEEECCeEEEEEEEeCCCCccCc----Cc---hhhhccCCCEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSY--DPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS----IF---PAQYSMDIHGYV   71 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~---~~~~~~~~~~~i   71 (157)
                      +|.+|||||||+|+|++.......  ..|+...+..  ........+.+||++|.....    .+   ....+..+++++
T Consensus         7 vG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~   84 (180)
T d1udxa2           7 VGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGV--VEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLL   84 (180)
T ss_dssp             ECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEE--EECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCceeccCCCceeeeece--eeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhh
Confidence            699999999999999976553222  2222222222  233334567899999953321    11   223467889999


Q ss_pred             EEEECCCh--hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEE
Q psy1873          72 LVYSITSH--KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVE  149 (157)
Q Consensus        72 lv~d~~~~--~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e  149 (157)
                      +++|....  +.++....|+........  .             .|+++|+||+|+.....+  ++........+.++++
T Consensus        85 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~-------------~p~iiv~NK~D~~~~~~~--~~~~~~~~~~~~~~~~  147 (180)
T d1udxa2          85 YVLDAADEPLKTLETLRKEVGAYDPALL--R-------------RPSLVALNKVDLLEEEAV--KALADALAREGLAVLP  147 (180)
T ss_dssp             EEEETTSCHHHHHHHHHHHHHHHCHHHH--H-------------SCEEEEEECCTTSCHHHH--HHHHHHHHTTTSCEEE
T ss_pred             hhcccccccccchhhhhhhhhccccccc--h-------------hhhhhhhhhhhhhhHHHH--HHHHHHHHhcCCeEEE
Confidence            99998653  234444444433222221  1             899999999999664332  3455555667899999


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      +||++|+|
T Consensus       148 iSA~tg~g  155 (180)
T d1udxa2         148 VSALTGAG  155 (180)
T ss_dssp             CCTTTCTT
T ss_pred             EEcCCCCC
Confidence            99999987

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=3.8e-22  Score=134.77  Aligned_cols=117  Identities=20%  Similarity=0.320  Sum_probs=88.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCc-CchhhhccCCCEEEEEEECCCh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS-IFPAQYSMDIHGYVLVYSITSH   79 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~ilv~d~~~~   79 (157)
                      +|++|||||||+++|+++.+...+ +|++..+......++..+.+.+||++|++.++ .++..++..++++++|+|+++.
T Consensus         6 vG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~   84 (207)
T d2fh5b1           6 VGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAF   84 (207)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTH
T ss_pred             ECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEcccc
Confidence            699999999999999998876543 66665543333335567789999999999886 4678888999999999999998


Q ss_pred             hh-HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc
Q psy1873          80 KS-FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER  129 (157)
Q Consensus        80 ~s-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~  129 (157)
                      .+ +.....++..++......           ...+|++|++||+|+....
T Consensus        85 ~~~~~~~~~~l~~~l~~~~~~-----------~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          85 QREVKDVAEFLYQVLIDSMAL-----------KNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTS-----------TTCCEEEEEEECTTSTTCC
T ss_pred             cccHHHHHHHHHHHHHhHHHh-----------hcCCcEEEEEECcccCCCC
Confidence            76 456666666665443321           1228999999999996543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.86  E-value=4.5e-21  Score=126.69  Aligned_cols=138  Identities=20%  Similarity=0.234  Sum_probs=96.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|+++.+.... ++.+.. ...+..++  ..+..||+.++..+...+..++...+++++++|+++..
T Consensus        19 vG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~   94 (186)
T d1f6ba_          19 LGLDNAGKTTLLHMLKDDRLGQHV-PTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE   94 (186)
T ss_dssp             EEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGG
T ss_pred             ECCCCCCHHHHHHHHhCCCCccee-cccccc-eeEEEecc--cccccccccchhhhhhHHhhhhcccceeeeeeeccCcc
Confidence            699999999999999998876443 444432 23345555  45688999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----------------h
Q psy1873          81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES-----------------W  143 (157)
Q Consensus        81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~  143 (157)
                      .+.....++...........             .|+++++||.|+..  .+...+.......                 .
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~-------------~~~li~~~K~D~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  159 (186)
T d1f6ba_          95 RLLESKEELDSLMTDETIAN-------------VPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNAR  159 (186)
T ss_dssp             GHHHHHHHHHHHHTCGGGTT-------------SCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSC
T ss_pred             chHHHHHHHHHhhcccccCC-------------CceEEEEeccCccc--cCCHHHHHHHHhhcccchhhhhhhHHHhhcC
Confidence            99888766655554443333             99999999999854  3333443333321                 2


Q ss_pred             CCcEEEeccccCCC
Q psy1873         144 KAGFVEASAKQDDY  157 (157)
Q Consensus       144 ~~~~~e~Sa~~~~~  157 (157)
                      ++++++|||++|+|
T Consensus       160 ~~~~~~~SA~tg~G  173 (186)
T d1f6ba_         160 PLEVFMCSVLKRQG  173 (186)
T ss_dssp             CEEEEECBTTTTBS
T ss_pred             CCEEEEEeCCCCCC
Confidence            34699999999997

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=3.1e-21  Score=125.30  Aligned_cols=133  Identities=20%  Similarity=0.184  Sum_probs=91.5

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccC-CccceEEEEEEECCeEEEEEEEeCCCCccCcCc--------hhhhccCCCEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDP-TIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF--------PAQYSMDIHGY   70 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~~~~~   70 (157)
                      +|++|||||||+|+|++.... ....+ +........+...+  ..+.+||++|..+....        ...++..+|++
T Consensus         7 vG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~   84 (161)
T d2gj8a1           7 AGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIEQADRV   84 (161)
T ss_dssp             EESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEE
T ss_pred             ECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHHhcccc
Confidence            699999999999999977653 22222 33333445555555  45788999997655432        23457889999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873          71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA  150 (157)
Q Consensus        71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  150 (157)
                      ++++|..+..+++....|...+ ......              .|+++|+||+|+......-       .+..+.+++++
T Consensus        85 i~~~d~~~~~~~~~~~~~~~~~-~~~~~~--------------~~iilv~NK~Dl~~~~~~~-------~~~~~~~~~~i  142 (161)
T d2gj8a1          85 LFMVDGTTTDAVDPAEIWPEFI-ARLPAK--------------LPITVVRNKADITGETLGM-------SEVNGHALIRL  142 (161)
T ss_dssp             EEEEETTTCCCCSHHHHCHHHH-HHSCTT--------------CCEEEEEECHHHHCCCCEE-------EEETTEEEEEC
T ss_pred             ceeeccccccchhhhhhhhhhh-hhcccc--------------cceeeccchhhhhhhHHHH-------HHhCCCcEEEE
Confidence            9999999988876666544333 333222              9999999999985532211       11235799999


Q ss_pred             ccccCCC
Q psy1873         151 SAKQDDY  157 (157)
Q Consensus       151 Sa~~~~~  157 (157)
                      ||++|+|
T Consensus       143 SAk~~~g  149 (161)
T d2gj8a1         143 SARTGEG  149 (161)
T ss_dssp             CTTTCTT
T ss_pred             ECCCCCC
Confidence            9999987

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=6.7e-20  Score=120.15  Aligned_cols=135  Identities=21%  Similarity=0.145  Sum_probs=79.8

Q ss_pred             CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCc---------CchhhhccCCCE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS---------IFPAQYSMDIHG   69 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~~~~~   69 (157)
                      +|++|||||||+++|++....  .....+........+...+  ..+.+||++|.....         .....++..+|+
T Consensus         6 iG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~   83 (171)
T d1mkya1           6 VGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADL   83 (171)
T ss_dssp             ECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSE
T ss_pred             ECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccccCcE
Confidence            699999999999999976542  2222332222234444444  567899999853222         112334678999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEE
Q psy1873          70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVE  149 (157)
Q Consensus        70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e  149 (157)
                      ++++.|.++....+. ..++..+....                 +|+++|+||+|+.+.  ...+....+.+.....+++
T Consensus        84 i~~~~~~~~~~~~~~-~~~~~~l~~~~-----------------~pviiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~i~  143 (171)
T d1mkya1          84 VLFVVDGKRGITKED-ESLADFLRKST-----------------VDTILVANKAENLRE--FEREVKPELYSLGFGEPIP  143 (171)
T ss_dssp             EEEEEETTTCCCHHH-HHHHHHHHHHT-----------------CCEEEEEESCCSHHH--HHHHTHHHHGGGSSCSCEE
T ss_pred             EEEeecccccccccc-ccccccccccc-----------------ccccccchhhhhhhh--hhhHHHHHHHhcCCCCeEE
Confidence            999999876544332 23333333222                 899999999998532  2222233333333357899


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      +||++|+|
T Consensus       144 iSAk~g~g  151 (171)
T d1mkya1         144 VSAEHNIN  151 (171)
T ss_dssp             CBTTTTBS
T ss_pred             EecCCCCC
Confidence            99999987

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=1.3e-19  Score=123.47  Aligned_cols=106  Identities=18%  Similarity=0.167  Sum_probs=83.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK   80 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~   80 (157)
                      ||++|||||||+++|..++    ..||+|.. ...+.+++  +.+++||++|++.++..|..++++++++++++|+++..
T Consensus        12 lG~~~vGKTsll~~~~~~~----~~pTiG~~-~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~   84 (221)
T d1azta2          12 LGAGESGKSTIVKQMRILH----VVLTSGIF-ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYN   84 (221)
T ss_dssp             ECSTTSSHHHHHHHHHHHH----CCCCCSCE-EEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGG
T ss_pred             ECCCCCCHHHHHHHHhcCC----cCCCCCeE-EEEEEECc--EEEEEEecCccceeccchhhhcccccceEEEEEccccc
Confidence            6999999999999997654    45788843 33445555  67899999999999999999999999999999998653


Q ss_pred             ----------hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873          81 ----------SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH  126 (157)
Q Consensus        81 ----------s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~  126 (157)
                                +..+...++..++.......             +|++|+|||+|+.
T Consensus        85 ~~~~~~~~~~r~~e~~~~~~~il~~~~~~~-------------~~iil~~NK~Dl~  127 (221)
T d1azta2          85 MVIREDNQTNRLQEALNLFKSIWNNRWLRT-------------ISVILFLNKQDLL  127 (221)
T ss_dssp             CBCTTTSCSBHHHHHHHHHHHHHTCGGGSS-------------CEEEEEEECHHHH
T ss_pred             cccccccchHHHHHHHHHHHHHhcChhhCC-------------CcEEEEechhhhh
Confidence                      34455555666665544333             9999999999984

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=3.9e-19  Score=115.05  Aligned_cols=132  Identities=20%  Similarity=0.156  Sum_probs=84.6

Q ss_pred             CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCc------C---chhhhccCCCE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS------I---FPAQYSMDIHG   69 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~---~~~~~~~~~~~   69 (157)
                      +|.+|||||||+|+|++.+..  .....+........+..++  ..+.+||++|.....      .   .....+..+|+
T Consensus         6 iG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~   83 (160)
T d1xzpa2           6 VGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADI   83 (160)
T ss_dssp             ECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSE
T ss_pred             ECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHHHhCCE
Confidence            699999999999999976542  2222222233344555665  567899999942211      1   11223577899


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEE
Q psy1873          70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVE  149 (157)
Q Consensus        70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e  149 (157)
                      +++++|.+++...+...-+     .....               .++++++||.|+.+..  ..++... ....+.++++
T Consensus        84 ii~v~d~~~~~~~~~~~~~-----~~~~~---------------~~~i~~~~k~d~~~~~--~~~~~~~-~~~~~~~~~~  140 (160)
T d1xzpa2          84 VLFVLDASSPLDEEDRKIL-----ERIKN---------------KRYLVVINKVDVVEKI--NEEEIKN-KLGTDRHMVK  140 (160)
T ss_dssp             EEEEEETTSCCCHHHHHHH-----HHHTT---------------SSEEEEEEECSSCCCC--CHHHHHH-HHTCSTTEEE
T ss_pred             EEEEEeCCCCcchhhhhhh-----hhccc---------------ccceeeeeeccccchh--hhHHHHH-HhCCCCcEEE
Confidence            9999999988765543221     11111               7899999999986532  2222221 2223469999


Q ss_pred             eccccCCC
Q psy1873         150 ASAKQDDY  157 (157)
Q Consensus       150 ~Sa~~~~~  157 (157)
                      +||++|+|
T Consensus       141 vSA~~g~g  148 (160)
T d1xzpa2         141 ISALKGEG  148 (160)
T ss_dssp             EEGGGTCC
T ss_pred             EECCCCCC
Confidence            99999987

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=2.5e-18  Score=113.81  Aligned_cols=137  Identities=23%  Similarity=0.152  Sum_probs=83.2

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC------------chhhhccC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI------------FPAQYSMD   66 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------------~~~~~~~~   66 (157)
                      +|.+|||||||+|+|++...  ...+..+........+..++.  .+.++|++|......            .....++.
T Consensus        14 iG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (186)
T d1mkya2          14 VGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEK   91 (186)
T ss_dssp             ECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc--eeeeeccCCccccccccccccccchhHHHHHHHhc
Confidence            69999999999999997654  233333333333444566664  467889988643222            23334677


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh---
Q psy1873          67 IHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW---  143 (157)
Q Consensus        67 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~---  143 (157)
                      +|++++++|.+....- ....++..+ ...   .             .|+++|+||+|+.........+.....+..   
T Consensus        92 ~dvii~v~d~~~~~~~-~~~~~~~~~-~~~---~-------------~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~  153 (186)
T d1mkya2          92 ADVVVIVLDATQGITR-QDQRMAGLM-ERR---G-------------RASVVVFNKWDLVVHREKRYDEFTKLFREKLYF  153 (186)
T ss_dssp             CSEEEEEEETTTCCCH-HHHHHHHHH-HHT---T-------------CEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGG
T ss_pred             CCEEEEeecccccchh-hHHHHHHHH-HHc---C-------------CceeeeccchhhhcchhhhhhhHHHHHHHHhcc
Confidence            8999999999865432 222222222 222   1             899999999998655443344443333322   


Q ss_pred             --CCcEEEeccccCCC
Q psy1873         144 --KAGFVEASAKQDDY  157 (157)
Q Consensus       144 --~~~~~e~Sa~~~~~  157 (157)
                        .++++++||++|.|
T Consensus       154 ~~~~~i~~vSa~~g~g  169 (186)
T d1mkya2         154 IDYSPLIFTSADKGWN  169 (186)
T ss_dssp             GTTSCEEECBTTTTBS
T ss_pred             cCCCeEEEEeCCCCCC
Confidence              25899999999986

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.77  E-value=6.4e-20  Score=121.62  Aligned_cols=140  Identities=17%  Similarity=0.140  Sum_probs=81.9

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCCccceEEEEEEE-CCeEEEEEEEeCCCCcc----CcCchhhh---ccCCCEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTFVKTTRM-NNQDYDLKLVDTAGQDE----YSIFPAQY---SMDIHGYV   71 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~~~~i   71 (157)
                      +|++|||||||+|+|.+.... ..+.+++.........+ ++.  .+.+||+||..+    ...+...+   +..++.++
T Consensus         7 iG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~   84 (185)
T d1lnza2           7 VGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGR--SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIV   84 (185)
T ss_dssp             ESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSC--EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCc--EEEEecCCCcccCchHHHHHHHHHHHHHHHhhhhh
Confidence            699999999999999876652 23333322222222233 333  468999999522    22222222   34578888


Q ss_pred             EEEECCChhhHHHHHHH--HHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh--CCcE
Q psy1873          72 LVYSITSHKSFEVVQIL--YDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW--KAGF  147 (157)
Q Consensus        72 lv~d~~~~~s~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~  147 (157)
                      ++.+............+  ..........           ...++|+++|+||+|+.+..    +..+.+.+.+  +.++
T Consensus        85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v  149 (185)
T d1lnza2          85 HVIDMSGLEGRDPYDDYLTINQELSEYNL-----------RLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPV  149 (185)
T ss_dssp             EEEESSCSSCCCHHHHHHHHHHHHHHSCS-----------STTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCB
T ss_pred             heeeecccccchhhhhhhhhhhccchhhh-----------hccCCcchhhccccchHhHH----HHHHHHHHHhccCCcE
Confidence            88877655443222211  1111111111           12348999999999986532    2233444444  5799


Q ss_pred             EEeccccCCC
Q psy1873         148 VEASAKQDDY  157 (157)
Q Consensus       148 ~e~Sa~~~~~  157 (157)
                      +.+||++|+|
T Consensus       150 ~~iSA~~g~G  159 (185)
T d1lnza2         150 FPISAVTREG  159 (185)
T ss_dssp             CCCSSCCSST
T ss_pred             EEEECCCCCC
Confidence            9999999987

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.77  E-value=3.8e-19  Score=117.48  Aligned_cols=137  Identities=20%  Similarity=0.115  Sum_probs=85.2

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCc-----cceE---EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTI-----ENTF---VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVL   72 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~-----~~~~---~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~il   72 (157)
                      ||++|+|||||+|+|++.........+.     +..+   ......++  ..+.++|++|+.++.......+..+|++++
T Consensus        11 iG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l~~~d~~il   88 (179)
T d1wb1a4          11 FGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAADIIDLALI   88 (179)
T ss_dssp             EECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTTSCCEEEE
T ss_pred             EeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhhhhcccccc
Confidence            6999999999999998643321111110     1000   12222333  557889999999988888888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecH--HHHHHHHHH----hCCc
Q psy1873          73 VYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISY--DEGKRLAES----WKAG  146 (157)
Q Consensus        73 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~--~~~~~~~~~----~~~~  146 (157)
                      ++|.++....+.. ..+..+. ..   .             +|+++|.||+|+........  ...+.+...    .+.+
T Consensus        89 v~d~~~g~~~~~~-~~~~~~~-~~---~-------------~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (179)
T d1wb1a4          89 VVDAKEGPKTQTG-EHMLILD-HF---N-------------IPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS  150 (179)
T ss_dssp             EEETTTCSCHHHH-HHHHHHH-HT---T-------------CCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC
T ss_pred             ccccccccchhhh-hhhhhhh-hc---C-------------CcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCe
Confidence            9999876443322 2222222 21   2             89999999999866433211  111222221    1358


Q ss_pred             EEEeccccCCC
Q psy1873         147 FVEASAKQDDY  157 (157)
Q Consensus       147 ~~e~Sa~~~~~  157 (157)
                      ++++||++|+|
T Consensus       151 iv~iSA~~g~g  161 (179)
T d1wb1a4         151 IIPISAKTGFG  161 (179)
T ss_dssp             EEECCTTTCTT
T ss_pred             EEEEEccCCcC
Confidence            99999999987

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.76  E-value=6.5e-19  Score=116.42  Aligned_cols=135  Identities=20%  Similarity=0.172  Sum_probs=78.4

Q ss_pred             CCCCCCChhhhHhhhhcccccccccC-CccceEEEEEEECCeEEEEEEEeCCCCccCc---------------Cchhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDP-TIENTFVKTTRMNNQDYDLKLVDTAGQDEYS---------------IFPAQYS   64 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------------~~~~~~~   64 (157)
                      ||.+|||||||+|++++.+......+ ++...  ..+...    .+.+||+||.....               .......
T Consensus         6 vG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~--~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (184)
T d2cxxa1           6 AGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNA   79 (184)
T ss_dssp             EEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHG
T ss_pred             ECCCCCCHHHHHHHHhCCCceeeCCCCEeecc--cccccc----cceecccCCceeccccccccccccchhhhhhhhhcc
Confidence            69999999999999998766433333 22221  112222    25789999952211               1123345


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHH------HHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHH
Q psy1873          65 MDIHGYVLVYSITSHKSFEVVQIL------YDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKR  138 (157)
Q Consensus        65 ~~~~~~ilv~d~~~~~s~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~  138 (157)
                      +.+|++++|+|.+..........+      -..+........             .|+++|+||+|+......   ....
T Consensus        80 ~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~-------------~p~iiv~NK~D~~~~~~~---~~~~  143 (184)
T d2cxxa1          80 KNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD-------------IPTIVAVNKLDKIKNVQE---VINF  143 (184)
T ss_dssp             GGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTT-------------CCEEEEEECGGGCSCHHH---HHHH
T ss_pred             cccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcC-------------CCEEEEEeeeehhhhHHH---HHHH
Confidence            778999999998765432221100      011112122222             999999999997543322   1222


Q ss_pred             HHHHhC-------CcEEEeccccCCC
Q psy1873         139 LAESWK-------AGFVEASAKQDDY  157 (157)
Q Consensus       139 ~~~~~~-------~~~~e~Sa~~~~~  157 (157)
                      +....+       ..++++||++|+|
T Consensus       144 ~~~~~~~~~~~~~~~~~~vSA~~g~g  169 (184)
T d2cxxa1         144 LAEKFEVPLSEIDKVFIPISAKFGDN  169 (184)
T ss_dssp             HHHHHTCCGGGHHHHEEECCTTTCTT
T ss_pred             HHHHhcccccccCCeEEEEECCCCCC
Confidence            222322       3488999999986

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.72  E-value=1.2e-17  Score=114.12  Aligned_cols=109  Identities=17%  Similarity=0.163  Sum_probs=70.0

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEE----------------EECCeEEEEEEEeCCCCccCcCchhhh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTT----------------RMNNQDYDLKLVDTAGQDEYSIFPAQY   63 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~----------------~~~~~~~~~~i~D~~g~~~~~~~~~~~   63 (157)
                      ||.+++|||||++++++..........+.... ....                .++.....+.++||||+..|.......
T Consensus        11 iGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~~~~   90 (227)
T d1g7sa4          11 LGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRG   90 (227)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSS
T ss_pred             EeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccchhc
Confidence            69999999999999986533211111111000 0000                122234567899999999998888888


Q ss_pred             ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873          64 SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM  127 (157)
Q Consensus        64 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~  127 (157)
                      +..+|++|+|+|..+.-.-+. ...+..+...    .             +|++|+.||+|+..
T Consensus        91 ~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~----~-------------~p~iivlNK~D~~~  136 (227)
T d1g7sa4          91 GALADLAILIVDINEGFKPQT-QEALNILRMY----R-------------TPFVVAANKIDRIH  136 (227)
T ss_dssp             SBSCSEEEEEEETTTCCCHHH-HHHHHHHHHT----T-------------CCEEEEEECGGGST
T ss_pred             ccccceEEEEEecccCcccch-hHHHHHhhcC----C-------------CeEEEEEECccCCC
Confidence            899999999999986433222 2222222222    2             99999999999854

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=6.8e-18  Score=113.46  Aligned_cols=112  Identities=17%  Similarity=0.234  Sum_probs=75.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhc----cCCCEEEEEEE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYS----MDIHGYVLVYS   75 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~----~~~~~~ilv~d   75 (157)
                      ||++|||||||+|+|+++++...    +. .....  .++.....+.+||++|++.+...+..++    ..++.+++++|
T Consensus         9 vG~~n~GKTSLln~l~~~~~~~~----tt~~~~~~--~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd   82 (209)
T d1nrjb_           9 AGPQNSGKTSLLTLLTTDSVRPT----VVSQEPLS--AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVD   82 (209)
T ss_dssp             ECSTTSSHHHHHHHHHHSSCCCB----CCCSSCEE--ETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCe----EEecceEE--EEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceEEE
Confidence            69999999999999998766422    22 11222  2333445678999999998776655443    44577888888


Q ss_pred             CC-ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q psy1873          76 IT-SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME  128 (157)
Q Consensus        76 ~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~  128 (157)
                      .+ +..+++.+..|+..+........          ...+|+++++||+|+...
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~~~~~~~----------~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          83 STVDPKKLTTTAEFLVDILSITESSC----------ENGIDILIACNKSELFTA  126 (209)
T ss_dssp             TTSCTTCCHHHHHHHHHHHHHHHHHS----------TTCCCEEEEEECTTSTTC
T ss_pred             EecccccHHHHHHHHHHHHHHHHHHH----------hccCCeEEEEEeeccccc
Confidence            66 56677777777655543322110          122999999999998653

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=7.8e-17  Score=105.78  Aligned_cols=136  Identities=21%  Similarity=0.167  Sum_probs=83.6

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccC-CccceEEEEEEECCeEEEEEEEeCCCCccC---------cCchhhhccCCCE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDP-TIENTFVKTTRMNNQDYDLKLVDTAGQDEY---------SIFPAQYSMDIHG   69 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~~~~~   69 (157)
                      +|.+|||||||+|+|++.+.. ..+.+ |...........+..  .+..||.+|....         ..........+++
T Consensus        11 iG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (179)
T d1egaa1          11 VGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY--QAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVEL   88 (179)
T ss_dssp             ECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTE--EEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCc--eeEeecCCCceecchhhhhhhhhhccccchhhcce
Confidence            699999999999999987653 22222 222333444444443  3556888775321         1222333455677


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEE
Q psy1873          70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK-AGFV  148 (157)
Q Consensus        70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~  148 (157)
                      ++++.|..+...  ....+...+.+    ..             .|.+++.||.|....+.........+...++ .+++
T Consensus        89 ~l~~~d~~~~~~--~~~~~~~~l~~----~~-------------~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~  149 (179)
T d1egaa1          89 VIFVVEGTRWTP--DDEMVLNKLRE----GK-------------APVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIV  149 (179)
T ss_dssp             EEEEEETTCCCH--HHHHHHHHHHS----SS-------------SCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEE
T ss_pred             eEEEEecCccch--hHHHHHHHhhh----cc-------------CceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEE
Confidence            778888765332  22222222322    11             7899999999987655444455566666666 4899


Q ss_pred             EeccccCCC
Q psy1873         149 EASAKQDDY  157 (157)
Q Consensus       149 e~Sa~~~~~  157 (157)
                      ++||++|+|
T Consensus       150 ~vSA~~g~g  158 (179)
T d1egaa1         150 PISAETGLN  158 (179)
T ss_dssp             ECCTTTTTT
T ss_pred             EEeCcCCCC
Confidence            999999987

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.65  E-value=4.1e-16  Score=103.81  Aligned_cols=135  Identities=16%  Similarity=0.208  Sum_probs=71.6

Q ss_pred             CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcC-------------chhhhccC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSI-------------FPAQYSMD   66 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~-------------~~~~~~~~   66 (157)
                      ||.+|||||||+|+|++.+............. ........   .+.+.|+.+......             .....+..
T Consensus        29 vG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (195)
T d1svia_          29 AGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREE  105 (195)
T ss_dssp             EEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTT
T ss_pred             ECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhhhhccccc
Confidence            69999999999999997654222111111111 11112222   234556655322111             11123456


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh---
Q psy1873          67 IHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW---  143 (157)
Q Consensus        67 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~---  143 (157)
                      +++++++.|.+++-.-+ ...++..+ ...   .             +|+++|+||+|+....... +....+.+.+   
T Consensus       106 ~~~vi~viD~~~~~~~~-~~~~~~~l-~~~---~-------------~piivv~NK~D~~~~~~~~-~~~~~~~~~l~~~  166 (195)
T d1svia_         106 LKAVVQIVDLRHAPSND-DVQMYEFL-KYY---G-------------IPVIVIATKADKIPKGKWD-KHAKVVRQTLNID  166 (195)
T ss_dssp             EEEEEEEEETTSCCCHH-HHHHHHHH-HHT---T-------------CCEEEEEECGGGSCGGGHH-HHHHHHHHHHTCC
T ss_pred             hhhhhhhhhcccccccc-cccccccc-ccc---c-------------CcceechhhccccCHHHHH-HHHHHHHHHhccc
Confidence            68899999987653211 12222222 222   2             8999999999986544332 2233333333   


Q ss_pred             -CCcEEEeccccCCC
Q psy1873         144 -KAGFVEASAKQDDY  157 (157)
Q Consensus       144 -~~~~~e~Sa~~~~~  157 (157)
                       ..+++.+||++|+|
T Consensus       167 ~~~~~~~~SA~~~~g  181 (195)
T d1svia_         167 PEDELILFSSETKKG  181 (195)
T ss_dssp             TTSEEEECCTTTCTT
T ss_pred             CCCCEEEEeCCCCCC
Confidence             35899999999986

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.63  E-value=1.3e-16  Score=106.46  Aligned_cols=141  Identities=17%  Similarity=0.123  Sum_probs=86.6

Q ss_pred             CCCCCCChhhhHhhhhccccc---cccc--CCccceE-EEEEE-------------------ECCeEEEEEEEeCCCCcc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV---DSYD--PTIENTF-VKTTR-------------------MNNQDYDLKLVDTAGQDE   55 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~---~~~~--~t~~~~~-~~~~~-------------------~~~~~~~~~i~D~~g~~~   55 (157)
                      +|..++|||||+++|++....   ....  -|....+ .....                   .......+.+.|+||+.+
T Consensus        11 iGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~   90 (195)
T d1kk1a3          11 VGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEA   90 (195)
T ss_dssp             ECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHH
T ss_pred             EeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeeccchhhh
Confidence            589999999999999753211   1100  1111111 00000                   011235688999999999


Q ss_pred             CcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee--cH
Q psy1873          56 YSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI--SY  133 (157)
Q Consensus        56 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~--~~  133 (157)
                      |......-+..+|+++++.|..+...-+...+.+..+.... .               .+++++.||.|+.+....  ..
T Consensus        91 f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~-~---------------~~iiv~inK~D~~d~~~~~~~~  154 (195)
T d1kk1a3          91 LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG-Q---------------KNIIIAQNKIELVDKEKALENY  154 (195)
T ss_dssp             HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-C---------------CCEEEEEECGGGSCHHHHHHHH
T ss_pred             hhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc-C---------------ccceeeeecccchhhHHHHHHH
Confidence            98887777888999999999887543233333333332222 1               558889999998764322  12


Q ss_pred             HHHHHHHHHhC---CcEEEeccccCCC
Q psy1873         134 DEGKRLAESWK---AGFVEASAKQDDY  157 (157)
Q Consensus       134 ~~~~~~~~~~~---~~~~e~Sa~~~~~  157 (157)
                      .+...+....+   ++++++||++|+|
T Consensus       155 ~~~~~~~~~~~~~~~~iIpiSA~~G~n  181 (195)
T d1kk1a3         155 RQIKEFIEGTVAENAPIIPISALHGAN  181 (195)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBS
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCCC
Confidence            22333433332   6899999999987

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.59  E-value=9.1e-16  Score=103.06  Aligned_cols=99  Identities=15%  Similarity=0.167  Sum_probs=64.8

Q ss_pred             EEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeC
Q psy1873          43 YDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK  122 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK  122 (157)
                      ..+.+.|+||+.+|....-.-+..+|++|+|.|..+.-.-...++.+.. ......               .|++|+.||
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~-~~~~~i---------------~~iIV~vNK  149 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVA-LGIIGV---------------KNLIIVQNK  149 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHH-HHHTTC---------------CCEEEEEEC
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHH-HHHcCC---------------ceeeecccc
Confidence            3578999999999988777777889999999999875211222222222 222221               588999999


Q ss_pred             CCCCCCceec--HHHHHHHHHHh---CCcEEEeccccCCC
Q psy1873         123 KDLHMERMIS--YDEGKRLAESW---KAGFVEASAKQDDY  157 (157)
Q Consensus       123 ~Dl~~~~~~~--~~~~~~~~~~~---~~~~~e~Sa~~~~~  157 (157)
                      +|+.+.....  ..+...+....   +++++.+||++|+|
T Consensus       150 ~Dl~~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~n  189 (205)
T d2qn6a3         150 VDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKIN  189 (205)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBS
T ss_pred             CCCccchHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCC
Confidence            9996543211  11122222222   36899999999987

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.58  E-value=1.8e-15  Score=100.81  Aligned_cols=138  Identities=14%  Similarity=0.084  Sum_probs=86.7

Q ss_pred             CCCCCCChhhhHhhhhccc-----cc-------c--cccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ-----FV-------D--SYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM   65 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~-----~~-------~--~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   65 (157)
                      +|..++|||||++++++.-     ..       .  ......+.+. .....+......+.+.|+||+..|......-+.
T Consensus         9 iGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~~~~~~~   88 (196)
T d1d2ea3           9 IGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTA   88 (196)
T ss_dssp             ESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSS
T ss_pred             EeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHHHHHHHh
Confidence            5899999999999997410     00       0  0001111111 222233344456788999999999887777788


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee---cHHHHHHHHHH
Q psy1873          66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI---SYDEGKRLAES  142 (157)
Q Consensus        66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~---~~~~~~~~~~~  142 (157)
                      .+|++|+|+|..+.-. .+.++.+..+.....                .|++|+.||.|+......   -..+...+...
T Consensus        89 ~aD~allVVda~~G~~-~QT~~~~~~a~~~~~----------------~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~  151 (196)
T d1d2ea3          89 PLDGCILVVAANDGPM-PQTREHLLLARQIGV----------------EHVVVYVNKADAVQDSEMVELVELEIRELLTE  151 (196)
T ss_dssp             CCSEEEEEEETTTCSC-HHHHHHHHHHHHTTC----------------CCEEEEEECGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             hcCeEEEEEEcCCCCc-hhHHHHHHHHHHhcC----------------CcEEEEEecccccccHHHHHHHHHHHHHHHHH
Confidence            9999999999987543 233333333322221                679999999998653321   12234455554


Q ss_pred             hC-----CcEEEeccccC
Q psy1873         143 WK-----AGFVEASAKQD  155 (157)
Q Consensus       143 ~~-----~~~~e~Sa~~~  155 (157)
                      .+     ++++.+||++|
T Consensus       152 ~~~~~~~~pii~iSa~~g  169 (196)
T d1d2ea3         152 FGYKGEETPIIVGSALCA  169 (196)
T ss_dssp             TTSCTTTSCEEECCHHHH
T ss_pred             hCCCcccCEEEEEEcccc
Confidence            44     67999999986

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.55  E-value=3.3e-14  Score=96.34  Aligned_cols=99  Identities=19%  Similarity=0.143  Sum_probs=67.5

Q ss_pred             EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN  121 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n  121 (157)
                      ...+.+.|+||+..|......-...+|++|+|.|..+.-.-+... . ..+.....-               ..++++.|
T Consensus        88 ~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e-~-~~~~~~~gv---------------~~iiv~vN  150 (222)
T d1zunb3          88 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR-H-SYIASLLGI---------------KHIVVAIN  150 (222)
T ss_dssp             SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHH-H-HHHHHHTTC---------------CEEEEEEE
T ss_pred             ceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHH-H-HHHHHHcCC---------------CEEEEEEE
Confidence            356789999999999988777788999999999998754333222 2 223233221               33788999


Q ss_pred             CCCCCCCcee----cHHHHHHHHHHhC-----CcEEEeccccCCC
Q psy1873         122 KKDLHMERMI----SYDEGKRLAESWK-----AGFVEASAKQDDY  157 (157)
Q Consensus       122 K~Dl~~~~~~----~~~~~~~~~~~~~-----~~~~e~Sa~~~~~  157 (157)
                      |.|+.+..+.    ...+...+....+     ++++.+||++|+|
T Consensus       151 K~D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~n  195 (222)
T d1zunb3         151 KMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDN  195 (222)
T ss_dssp             CTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTT
T ss_pred             ccccccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCcc
Confidence            9999754321    1223445555554     4789999999987

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.52  E-value=1.1e-14  Score=97.60  Aligned_cols=134  Identities=20%  Similarity=0.178  Sum_probs=84.5

Q ss_pred             CCCCCCChhhhHhhhhcc--------cccc----cc-------cCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchh
Q psy1873           1 MGYRSVGKSSLSIQFVDG--------QFVD----SY-------DPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA   61 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~--------~~~~----~~-------~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   61 (157)
                      +|..++|||||+++|+..        ....    .+       --|+. .....+..++  ..+.+.|+||+.+|.....
T Consensus         9 iGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~-~~~~~~~~~~--~~i~iiDtPGh~df~~~~~   85 (204)
T d2c78a3           9 IGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITIN-TAHVEYETAK--RHYSHVDCPGHADYIKNMI   85 (204)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCS-CEEEEEECSS--CEEEEEECCCSGGGHHHHH
T ss_pred             EeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEE-eeEEEEEeCC--eEEEEEeCCCchhhHHHHH
Confidence            699999999999999631        0000    00       01111 1233444455  4568899999999998887


Q ss_pred             hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCcee---cHHHHH
Q psy1873          62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERMI---SYDEGK  137 (157)
Q Consensus        62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~~---~~~~~~  137 (157)
                      .-+..+|++|||+|..+.-..+....| ..+....                 +| ++|+.||.|+.+....   -.++.+
T Consensus        86 ~~~~~aD~avlVvda~~Gv~~qt~~~~-~~~~~~g-----------------i~~iiv~iNK~D~~~~~~~~~~~~~~i~  147 (204)
T d2c78a3          86 TGAAQMDGAILVVSAADGPMPQTREHI-LLARQVG-----------------VPYIVVFMNKVDMVDDPELLDLVEMEVR  147 (204)
T ss_dssp             HHHTTCSSEEEEEETTTCCCHHHHHHH-HHHHHTT-----------------CCCEEEEEECGGGCCCHHHHHHHHHHHH
T ss_pred             HHHHHCCEEEEEEECCCCCcHHHHHHH-HHHHHcC-----------------CCeEEEEEEecccCCCHHHHHHHHHHHH
Confidence            888999999999999876555443322 2222222                 55 7788999998653221   122334


Q ss_pred             HHHHHhC-----CcEEEeccccC
Q psy1873         138 RLAESWK-----AGFVEASAKQD  155 (157)
Q Consensus       138 ~~~~~~~-----~~~~e~Sa~~~  155 (157)
                      .+....+     ++++..||..+
T Consensus       148 ~~l~~~~~~~~~i~~i~~sa~~~  170 (204)
T d2c78a3         148 DLLNQYEFPGDEVPVIRGSALLA  170 (204)
T ss_dssp             HHHHHTTSCTTTSCEEECCHHHH
T ss_pred             HHHHhcCCCcccceeeeeechhh
Confidence            4444433     57888888654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=5.5e-13  Score=87.32  Aligned_cols=138  Identities=11%  Similarity=0.040  Sum_probs=62.7

Q ss_pred             CCCCCCChhhhHhhhhcccccccc--cCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc-------hhh---hccCCC
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSY--DPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF-------PAQ---YSMDIH   68 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~---~~~~~~   68 (157)
                      +|.+|||||||+|++.+.+.....  .++............+ ...+..++..+.......       ...   ......
T Consensus        22 vG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (188)
T d1puia_          22 AGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG-KRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQ  100 (188)
T ss_dssp             EECTTSSHHHHHTTTCCC-------------CCEEEEEEETT-EEEEECCCCC------CCHHHHHHHHHHHHHHCTTEE
T ss_pred             ECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccc-cceeeeecccccchhhhhhhhhhhhhhhhhhhhhhee
Confidence            699999999999999987653221  1222222222222222 222222222222211111       111   122233


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecH--HHHHHHHHHhC--
Q psy1873          69 GYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISY--DEGKRLAESWK--  144 (157)
Q Consensus        69 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~--~~~~~~~~~~~--  144 (157)
                      .++.+.+........ ...++..+....                 .++++++||+|+........  +...+.....+  
T Consensus       101 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------------~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~  162 (188)
T d1puia_         101 GLVVLMDIRHPLKDL-DQQMIEWAVDSN-----------------IAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD  162 (188)
T ss_dssp             EEEEEEETTSCCCHH-HHHHHHHHHHTT-----------------CCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred             EEEEeecccccchhH-HHHHHHHhhhcc-----------------ccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCC
Confidence            444555554433222 223333332221                 88999999999865332221  11222222222  


Q ss_pred             CcEEEeccccCCC
Q psy1873         145 AGFVEASAKQDDY  157 (157)
Q Consensus       145 ~~~~e~Sa~~~~~  157 (157)
                      .+++.+||++|+|
T Consensus       163 ~~~i~vSA~~g~G  175 (188)
T d1puia_         163 VQVETFSSLKKQG  175 (188)
T ss_dssp             EEEEECBTTTTBS
T ss_pred             CcEEEEeCCCCCC
Confidence            4899999999987

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=1.2e-12  Score=89.48  Aligned_cols=99  Identities=15%  Similarity=0.093  Sum_probs=67.0

Q ss_pred             EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhh---H---HHHHHHHHHHHHHhccccCCCCCCCCCCCCCC-
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKS---F---EVVQILYDKLLDMTGKIQNSSVKSPTSCVSSV-  114 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-  114 (157)
                      ...+.+.|+||+.+|......-...+|++|+|.|..+..-   +   .+..+.+. +.....                + 
T Consensus        83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~-~~~~~g----------------v~  145 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAFTLG----------------VR  145 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHHHTT----------------CC
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHH-HHHHcC----------------CC
Confidence            3678999999999999888888899999999999875421   0   12222222 222222                4 


Q ss_pred             cEEEEEeCCCCCCCcee----cHHHHHHHHHHhC-----CcEEEeccccCCC
Q psy1873         115 PIVLVGNKKDLHMERMI----SYDEGKRLAESWK-----AGFVEASAKQDDY  157 (157)
Q Consensus       115 p~~vv~nK~Dl~~~~~~----~~~~~~~~~~~~~-----~~~~e~Sa~~~~~  157 (157)
                      +++|+.||.|+.+..+-    ...+...+....+     ++++.+||++|+|
T Consensus       146 ~iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~n  197 (239)
T d1f60a3         146 QLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDN  197 (239)
T ss_dssp             EEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBT
T ss_pred             eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCc
Confidence            48889999998653321    1233445555554     5789999999986

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.32  E-value=1.7e-11  Score=84.52  Aligned_cols=117  Identities=15%  Similarity=0.158  Sum_probs=69.0

Q ss_pred             CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchh-------h--hccCCCE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA-------Q--YSMDIHG   69 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~--~~~~~~~   69 (157)
                      +|.+|||||||+|.+++....  ....+++..........++.  .+.++||||-........       .  .....++
T Consensus        38 vG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~--~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~  115 (257)
T d1h65a_          38 MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGF--TLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDV  115 (257)
T ss_dssp             EESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHHTTTCEECE
T ss_pred             ECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccE--EEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCe
Confidence            699999999999999986542  22334444444555566764  578999999643322111       1  1234578


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHHhccc-cCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec
Q psy1873          70 YVLVYSITSHKSFEVVQILYDKLLDMTGKI-QNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS  132 (157)
Q Consensus        70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~  132 (157)
                      +++|.+++...--+.....+..+....... .             .+++||.||+|........
T Consensus       116 il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~-------------~~~ivv~t~~D~~~~~~~~  166 (257)
T d1h65a_         116 LLYVDRLDAYRVDNLDKLVAKAITDSFGKGIW-------------NKAIVALTHAQFSPPDGLP  166 (257)
T ss_dssp             EEEEEESSCCCCCHHHHHHHHHHHHHHCGGGG-------------GGEEEEEECCSCCCGGGCC
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHcchhhh-------------hCEEEEEECcccCCcCCCc
Confidence            888888775321111122222232222211 1             5799999999986644444

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.32  E-value=1.2e-12  Score=88.79  Aligned_cols=102  Identities=18%  Similarity=0.195  Sum_probs=66.6

Q ss_pred             CeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHH------HHHHHHHHHHHHhccccCCCCCCCCCCCCC
Q psy1873          40 NQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFE------VVQILYDKLLDMTGKIQNSSVKSPTSCVSS  113 (157)
Q Consensus        40 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  113 (157)
                      .....+.+.|+||+..|......-+.-+|++|+|.|..+...-+      +..+.+. +..... .              
T Consensus        78 ~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~-~~~~~~-~--------------  141 (224)
T d1jnya3          78 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHII-LAKTMG-L--------------  141 (224)
T ss_dssp             CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHH-HHHHTT-C--------------
T ss_pred             cCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHH-HHHHhC-C--------------
Confidence            34467899999999999998888889999999999998753211      1222111 112221 1              


Q ss_pred             CcEEEEEeCCCCCCC--cee----cHHHHHHHHHHhC-----CcEEEeccccCCC
Q psy1873         114 VPIVLVGNKKDLHME--RMI----SYDEGKRLAESWK-----AGFVEASAKQDDY  157 (157)
Q Consensus       114 ~p~~vv~nK~Dl~~~--~~~----~~~~~~~~~~~~~-----~~~~e~Sa~~~~~  157 (157)
                      .+++++.||.|+...  ...    ...+...+....+     ++++.+||.+|+|
T Consensus       142 ~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~N  196 (224)
T d1jnya3         142 DQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDN  196 (224)
T ss_dssp             TTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBT
T ss_pred             CceEEEEEcccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCC
Confidence            568899999998532  111    1122333444433     5789999999986

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.31  E-value=5.9e-12  Score=86.29  Aligned_cols=100  Identities=20%  Similarity=0.111  Sum_probs=53.8

Q ss_pred             EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhh---HH---HHHHHHHHHHHHhccccCCCCCCCCCCCCCCc
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKS---FE---VVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP  115 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p  115 (157)
                      ...+.+.|+||+..|......-...+|++|+|.|..+..-   ++   +..+.+ .+.....-               .+
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l-~l~~~~~i---------------~~  164 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-VLARTQGI---------------NH  164 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHHTTC---------------SS
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHH-HHHHHcCC---------------Ce
Confidence            3567899999999999888888889999999999986421   10   222222 12222211               34


Q ss_pred             EEEEEeCCCCCCCc--eec----HHHHHHHHHHh-------CCcEEEeccccCCC
Q psy1873         116 IVLVGNKKDLHMER--MIS----YDEGKRLAESW-------KAGFVEASAKQDDY  157 (157)
Q Consensus       116 ~~vv~nK~Dl~~~~--~~~----~~~~~~~~~~~-------~~~~~e~Sa~~~~~  157 (157)
                      ++++.||.|+....  +-.    .++...+....       .++++.+||++|+|
T Consensus       165 iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~n  219 (245)
T d1r5ba3         165 LVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQN  219 (245)
T ss_dssp             EEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBT
T ss_pred             EEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCC
Confidence            88999999985321  111    12222222222       25799999999987

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.27  E-value=1.7e-11  Score=85.05  Aligned_cols=126  Identities=13%  Similarity=0.097  Sum_probs=82.1

Q ss_pred             CCCCCCChhhhHhhhhccccccccc------CCc----------c---ceEEEEEEECCeEEEEEEEeCCCCccCcCchh
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSYD------PTI----------E---NTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA   61 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~~------~t~----------~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   61 (157)
                      +|..++|||||+.+++...-.....      .++          +   ......+.+++  ..+.+.||||+..|..-..
T Consensus        12 ~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~dF~~e~~   89 (276)
T d2bv3a2          12 AAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHVDFTIEVE   89 (276)
T ss_dssp             EECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSSSCSTTHH
T ss_pred             EeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchhhhHHHHH
Confidence            5899999999999996321100000      000          0   01123344555  5679999999999999999


Q ss_pred             hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873          62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE  141 (157)
Q Consensus        62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~  141 (157)
                      ..++-+|++|+|+|..+.-.-+...-| .......                 +|.+++.||.|.....  .......+..
T Consensus        90 ~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~~~-----------------lP~i~fINKmDr~~ad--~~~~l~ei~~  149 (276)
T d2bv3a2          90 RSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEKYK-----------------VPRIAFANKMDKTGAD--LWLVIRTMQE  149 (276)
T ss_dssp             HHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHTTT-----------------CCEEEEEECTTSTTCC--HHHHHHHHHH
T ss_pred             HHHHhhhheEEeccccCCcchhHHHHH-HHHHHcC-----------------CCEEEEEecccccccc--cchhHHHHHH
Confidence            999999999999999987665554443 3333222                 9999999999974422  2344455555


Q ss_pred             HhCCcEE
Q psy1873         142 SWKAGFV  148 (157)
Q Consensus       142 ~~~~~~~  148 (157)
                      .++...+
T Consensus       150 ~l~~~~v  156 (276)
T d2bv3a2         150 RLGARPV  156 (276)
T ss_dssp             TTCCCEE
T ss_pred             HhCCCeE
Confidence            6665433

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.18  E-value=2.9e-11  Score=83.59  Aligned_cols=104  Identities=14%  Similarity=0.094  Sum_probs=72.0

Q ss_pred             CCCCCCChhhhHhhhhccccc--------cc------------ccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV--------DS------------YDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP   60 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~--------~~------------~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   60 (157)
                      +|..++|||||+.+++...-.        ..            ...|+. .....+.+++  ..+.++||||+.+|..-.
T Consensus         8 iGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~-~~~~~~~~~~--~~~n~iDtPGh~dF~~e~   84 (267)
T d2dy1a2           8 VGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVR-TGVAPLLFRG--HRVFLLDAPGYGDFVGEI   84 (267)
T ss_dssp             EESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCS-CEEEEEEETT--EEEEEEECCCSGGGHHHH
T ss_pred             EcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEE-eecccccccc--cceeEEccCchhhhhhhh
Confidence            589999999999999632110        00            001111 1133345555  567899999999999988


Q ss_pred             hhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCC
Q psy1873          61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDL  125 (157)
Q Consensus        61 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl  125 (157)
                      ...++.+|++|+|.|..+.-..+....| ....+..                 +|.+++.||.|.
T Consensus        85 ~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~~~-----------------~p~~i~iNk~D~  131 (267)
T d2dy1a2          85 RGALEAADAALVAVSAEAGVQVGTERAW-TVAERLG-----------------LPRMVVVTKLDK  131 (267)
T ss_dssp             HHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHTT-----------------CCEEEEEECGGG
T ss_pred             hhhhcccCceEEEeeccCCccchhHHHH-Hhhhhcc-----------------cccccccccccc
Confidence            8899999999999999877665544433 3333322                 999999999995

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=1.5e-11  Score=89.90  Aligned_cols=102  Identities=13%  Similarity=0.023  Sum_probs=57.1

Q ss_pred             CCCCCCChhhhHhhhhcccccccc------cCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc-----hhhhccCCCE
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDSY------DPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF-----PAQYSMDIHG   69 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----~~~~~~~~~~   69 (157)
                      +|.+|||||||+|.|++.......      .+|+....  .....+ .-.+.+|||||-......     ....+..+|.
T Consensus        62 ~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~--~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~  138 (400)
T d1tq4a_          62 TGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDF  138 (400)
T ss_dssp             EECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSE
T ss_pred             ECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeee--eeeccC-CCeEEEEeCCCcccccccHHHHHHHhhhhcceE
Confidence            599999999999999975432111      11222111  112221 123679999996543322     2234566788


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCC
Q psy1873          70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDL  125 (157)
Q Consensus        70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl  125 (157)
                      +|++.|..-.+.  + ...+..+...    .             .|+++|.||+|.
T Consensus       139 ~l~~~~~~~~~~--d-~~l~~~l~~~----~-------------k~~~~V~nK~D~  174 (400)
T d1tq4a_         139 FIIISATRFKKN--D-IDIAKAISMM----K-------------KEFYFVRTKVDS  174 (400)
T ss_dssp             EEEEESSCCCHH--H-HHHHHHHHHT----T-------------CEEEEEECCHHH
T ss_pred             EEEecCCCCCHH--H-HHHHHHHHHc----C-------------CCEEEEEeCccc
Confidence            888766432221  1 1222223222    2             899999999995

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=7.7e-11  Score=84.05  Aligned_cols=68  Identities=19%  Similarity=0.228  Sum_probs=54.2

Q ss_pred             CeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEE
Q psy1873          40 NQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV  119 (157)
Q Consensus        40 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv  119 (157)
                      ++.+.+.+.||||+..|..-....++-+|++|+|+|..+.-..+...-| .......                 .|++++
T Consensus        93 ~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~-~~a~~~~-----------------~p~i~v  154 (341)
T d1n0ua2          93 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVL-RQALGER-----------------IKPVVV  154 (341)
T ss_dssp             SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHH-HHHHHTT-----------------CEEEEE
T ss_pred             ccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHH-HHHHHcC-----------------CCeEEE
Confidence            4567899999999999999988889999999999999987665544333 2232222                 999999


Q ss_pred             EeCCCC
Q psy1873         120 GNKKDL  125 (157)
Q Consensus       120 ~nK~Dl  125 (157)
                      .||.|.
T Consensus       155 iNKiDr  160 (341)
T d1n0ua2         155 INKVDR  160 (341)
T ss_dssp             EECHHH
T ss_pred             EECccc
Confidence            999995

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.11  E-value=5e-10  Score=78.58  Aligned_cols=78  Identities=14%  Similarity=0.088  Sum_probs=52.5

Q ss_pred             CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCe---------------EEEEEEEeCCCC----ccCcCc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQ---------------DYDLKLVDTAGQ----DEYSIF   59 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~----~~~~~~   59 (157)
                      ||.|+||||||++.+++...  ...|..|+-+.-...+.+.+.               ...+++.|.+|-    .+-..+
T Consensus        16 vG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA~~g~GL   95 (296)
T d1ni3a1          16 VGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGL   95 (296)
T ss_dssp             EECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSS
T ss_pred             ECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccccccccccc
Confidence            69999999999999997643  455665543322333444432               246789999863    344444


Q ss_pred             hhh---hccCCCEEEEEEECCC
Q psy1873          60 PAQ---YSMDIHGYVLVYSITS   78 (157)
Q Consensus        60 ~~~---~~~~~~~~ilv~d~~~   78 (157)
                      ...   .++.+|++|.|.|..+
T Consensus        96 Gn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          96 GNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CHHHHHHHTTCSEEEEEEECCC
T ss_pred             HHHHHHHhhccceeEEEEeccC
Confidence            333   4578999999998865

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.09  E-value=3.2e-10  Score=78.93  Aligned_cols=77  Identities=17%  Similarity=0.118  Sum_probs=47.4

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCCccceEEEEEEECCe---------------EEEEEEEeCCCCc----cCcCch
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTFVKTTRMNNQ---------------DYDLKLVDTAGQD----EYSIFP   60 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~----~~~~~~   60 (157)
                      ||.|+||||||++++++.+.. ..|..|+-+.-...+.+.+.               ...+.+.|++|--    .-..+.
T Consensus         8 vG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~~g~Glg   87 (278)
T d1jala1           8 VGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLG   87 (278)
T ss_dssp             ECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGT
T ss_pred             ECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcccCCCcc
Confidence            699999999999999977653 44544443222222333321               1358899999842    223344


Q ss_pred             hh---hccCCCEEEEEEECC
Q psy1873          61 AQ---YSMDIHGYVLVYSIT   77 (157)
Q Consensus        61 ~~---~~~~~~~~ilv~d~~   77 (157)
                      ..   .++.+|+++.|.|..
T Consensus        88 ~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          88 NKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             CCHHHHHHTCSEEEEEEECS
T ss_pred             HHHHHHHHhccceEEEeecc
Confidence            33   467899999999763

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.96  E-value=3.9e-11  Score=81.52  Aligned_cols=70  Identities=21%  Similarity=0.126  Sum_probs=40.1

Q ss_pred             EEEEEEeCCCCccCcCch---hhhcc--CCCEEEEEEECC---ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCC
Q psy1873          43 YDLKLVDTAGQDEYSIFP---AQYSM--DIHGYVLVYSIT---SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSV  114 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~~~---~~~~~--~~~~~ilv~d~~---~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  114 (157)
                      ..+.+.|++|+..+....   ....+  ..+.++++.|..   ++..+..............   .             .
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~---~-------------~  158 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL---G-------------A  158 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH---T-------------S
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh---C-------------C
Confidence            357889999997654321   22222  345788888865   3433332222222222222   2             8


Q ss_pred             cEEEEEeCCCCCCC
Q psy1873         115 PIVLVGNKKDLHME  128 (157)
Q Consensus       115 p~~vv~nK~Dl~~~  128 (157)
                      |.+++.||.|+...
T Consensus       159 ~~ivvinK~D~~~~  172 (244)
T d1yrba1         159 TTIPALNKVDLLSE  172 (244)
T ss_dssp             CEEEEECCGGGCCH
T ss_pred             CceeeeeccccccH
Confidence            99999999998653

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.91  E-value=1.5e-09  Score=76.79  Aligned_cols=78  Identities=19%  Similarity=0.063  Sum_probs=38.9

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccccCCccc-eEEEEE-EEC--------------------CeEEEEEEEeCCCCccC-
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIEN-TFVKTT-RMN--------------------NQDYDLKLVDTAGQDEY-   56 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~-~~~~~~-~~~--------------------~~~~~~~i~D~~g~~~~-   56 (157)
                      ||.||||||||+|++++.+. ...|..|+-+ ...... ..+                    .....++++|+||--.. 
T Consensus         6 vG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pGli~ga   85 (319)
T d1wxqa1           6 VGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPGA   85 (319)
T ss_dssp             EECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC------
T ss_pred             ECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCCcccch
Confidence            69999999999999998655 3444434321 111111 010                    12367899999984321 


Q ss_pred             ---cCchhh---hccCCCEEEEEEECCC
Q psy1873          57 ---SIFPAQ---YSMDIHGYVLVYSITS   78 (157)
Q Consensus        57 ---~~~~~~---~~~~~~~~ilv~d~~~   78 (157)
                         ..+...   .++.+|+++.|.|..+
T Consensus        86 ~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          86 HEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             ---------CCCSSTTCSEEEEEEETTC
T ss_pred             hcccchHHHHHHhhccceEEEEEecccc
Confidence               222222   3567899999999763

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.84  E-value=2.5e-09  Score=75.75  Aligned_cols=90  Identities=12%  Similarity=0.103  Sum_probs=52.3

Q ss_pred             EEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeC
Q psy1873          43 YDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK  122 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK  122 (157)
                      +.+.+.+|.|.-.-.   .....-+|.++++......+..+.++.-+.+                      .+=++|.||
T Consensus       144 ~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE----------------------~aDi~vvNK  198 (323)
T d2qm8a1         144 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIFE----------------------LADMIAVNK  198 (323)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHHH----------------------HCSEEEEEC
T ss_pred             CCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhhhhHhh----------------------hhheeeEec
Confidence            556677776643322   2234558999999998877666544322221                      456899999


Q ss_pred             CCCCCCceecHHHHHHHHHH----------hCCcEEEeccccCCC
Q psy1873         123 KDLHMERMISYDEGKRLAES----------WKAGFVEASAKQDDY  157 (157)
Q Consensus       123 ~Dl~~~~~~~~~~~~~~~~~----------~~~~~~e~Sa~~~~~  157 (157)
                      +|+.+...........+...          ...+++.+||++|+|
T Consensus       199 aD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~G  243 (323)
T d2qm8a1         199 ADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKG  243 (323)
T ss_dssp             CSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBS
T ss_pred             cccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCC
Confidence            99865444333322223322          235799999999986

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=5.3e-09  Score=74.10  Aligned_cols=73  Identities=11%  Similarity=0.071  Sum_probs=39.4

Q ss_pred             hccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec--HHHHHHHH
Q psy1873          63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS--YDEGKRLA  140 (157)
Q Consensus        63 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~--~~~~~~~~  140 (157)
                      ....+|.+++|.+....+..+.++.-+.+                      .+=++|.||+|+.......  ..+.....
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e----------------------~aDi~VvNKaD~~~~~~~~~~~~~~~~al  221 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQGIKKGLME----------------------VADLIVINKDDGDNHTNVAIARHMYESAL  221 (327)
T ss_dssp             HHTTCSEEEEEECC------CCCCHHHHH----------------------HCSEEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred             hhhccceEEEEecCCCchhhhhhchhhhc----------------------cccEEEEEeecccchHHHHHHHHHHHHHh
Confidence            45668999998776555555444333222                      3446778999986532221  11122222


Q ss_pred             HH-------hCCcEEEeccccCCC
Q psy1873         141 ES-------WKAGFVEASAKQDDY  157 (157)
Q Consensus       141 ~~-------~~~~~~e~Sa~~~~~  157 (157)
                      +.       ...+++.|||++|+|
T Consensus       222 ~~~~~~~~~w~p~V~~~SA~~g~G  245 (327)
T d2p67a1         222 HILRRKYDEWQPRVLTCSALEKRG  245 (327)
T ss_dssp             HHSCCSBTTBCCEEEECBGGGTBS
T ss_pred             hhcccCCCCCcceeEEEEeeCCCC
Confidence            21       124799999999987

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.67  E-value=4.3e-08  Score=68.39  Aligned_cols=29  Identities=31%  Similarity=0.358  Sum_probs=22.5

Q ss_pred             CCCCCCChhhhHhhhhcccc-cccccCCcc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIE   29 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~   29 (157)
                      +|..++|||||+|.|++.++ +....+++.
T Consensus        32 vG~~SsGKSsliNaLlg~~~lP~~~~~~T~   61 (299)
T d2akab1          32 VGGQSAGKSSVLENFVGRDFLPRGSGIVTR   61 (299)
T ss_dssp             EEBTTSCHHHHHHHHHTSCCSCCCSSCSCS
T ss_pred             EcCCCCCHHHHHHHHhCCCcCCCCCCcccc
Confidence            58999999999999999886 444444443

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.48  E-value=9.3e-08  Score=66.91  Aligned_cols=20  Identities=40%  Similarity=0.539  Sum_probs=18.3

Q ss_pred             CCCCCCChhhhHhhhhcccc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQF   20 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~   20 (157)
                      ||..++|||||+|.+++.++
T Consensus        30 vG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          30 VGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             EECSSSSHHHHHHHHHTSCC
T ss_pred             EeCCCCCHHHHHHHHhCCCC
Confidence            69999999999999998776

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.23  E-value=1.5e-06  Score=57.88  Aligned_cols=76  Identities=21%  Similarity=0.124  Sum_probs=52.2

Q ss_pred             hccCCCEEEEEEECCChh-hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873          63 YSMDIHGYVLVYSITSHK-SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE  141 (157)
Q Consensus        63 ~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~  141 (157)
                      ...+.|.+++|+++.+|+ +...+.+++.......                 +|.+||.||+||.+....  .....+..
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~-----------------i~pvIvlnK~DL~~~~~~--~~~~~~~~   67 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNE-----------------LETVMVINKMDLYDEDDL--RKVRELEE   67 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTT-----------------CEEEEEECCGGGCCHHHH--HHHHHHHH
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcC-----------------CCEEEEEeCcccCCHHHH--HHHHHhhc
Confidence            456789999999988764 5666677665554333                 999999999999653322  22233333


Q ss_pred             H--hCCcEEEeccccCCC
Q psy1873         142 S--WKAGFVEASAKQDDY  157 (157)
Q Consensus       142 ~--~~~~~~e~Sa~~~~~  157 (157)
                      .  .+.+.+.+||++++|
T Consensus        68 ~~~~~~~v~~vSa~~~~g   85 (225)
T d1u0la2          68 IYSGLYPIVKTSAKTGMG   85 (225)
T ss_dssp             HHTTTSCEEECCTTTCTT
T ss_pred             ccccceeEEEeccccchh
Confidence            2  346899999999875

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.07  E-value=9e-07  Score=59.04  Aligned_cols=54  Identities=24%  Similarity=0.271  Sum_probs=29.8

Q ss_pred             CCCCCCChhhhHhhhhccccc--ccccCCc--c--ce-EEEEEEECCeEEEEEEEeCCCCccCc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTI--E--NT-FVKTTRMNNQDYDLKLVDTAGQDEYS   57 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~--~~~~~t~--~--~~-~~~~~~~~~~~~~~~i~D~~g~~~~~   57 (157)
                      +|++|||||||+|++......  ...+...  |  .+ ...-+.+++..   .++||||-..+.
T Consensus       101 ~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~~  161 (225)
T d1u0la2         101 AGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANLE  161 (225)
T ss_dssp             ECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTCC
T ss_pred             ECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCcccccc
Confidence            699999999999999864321  1111111  1  11 12222343333   579999976554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.06  E-value=5.7e-06  Score=55.28  Aligned_cols=78  Identities=14%  Similarity=0.046  Sum_probs=53.0

Q ss_pred             hccCCCEEEEEEECCChh-hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecH--HHHHHH
Q psy1873          63 YSMDIHGYVLVYSITSHK-SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISY--DEGKRL  139 (157)
Q Consensus        63 ~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~--~~~~~~  139 (157)
                      ...+.|.+++|.++.+|+ +...+.+++.......                 ++.+||.||+||.+......  ......
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~-----------------i~pvIvlnK~DL~~~~~~~~~~~~~~~~   69 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAND-----------------IQPIICITKMDLIEDQDTEDTIQAYAED   69 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTT-----------------CEEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHHHcC-----------------CCEEEEEecccccccHHHHHHHHHHHHH
Confidence            346789999999988764 5666676655443332                 89999999999965432111  112223


Q ss_pred             HHHhCCcEEEeccccCCC
Q psy1873         140 AESWKAGFVEASAKQDDY  157 (157)
Q Consensus       140 ~~~~~~~~~e~Sa~~~~~  157 (157)
                      ....|++.+.+||++++|
T Consensus        70 y~~~g~~v~~~Sa~~~~g   87 (231)
T d1t9ha2          70 YRNIGYDVYLTSSKDQDS   87 (231)
T ss_dssp             HHHHTCCEEECCHHHHTT
T ss_pred             HhhccccceeeecCChhH
Confidence            355689999999998865

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=1.7e-05  Score=52.71  Aligned_cols=33  Identities=12%  Similarity=-0.004  Sum_probs=22.0

Q ss_pred             cEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcEEEec
Q psy1873         115 PIVLVGNKKDLHMERMISYDEGKRLAESWK--AGFVEAS  151 (157)
Q Consensus       115 p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~e~S  151 (157)
                      .=+|+.||+|+.++    .+..++..+.++  ++++++|
T Consensus       151 AD~ivlNK~Dl~~~----~~~~~~~l~~lNP~a~Ii~~~  185 (222)
T d1nija1         151 ADRILLTKTDVAGE----AEKLHERLARINARAPVYTVT  185 (222)
T ss_dssp             CSEEEEECTTTCSC----THHHHHHHHHHCSSSCEEECC
T ss_pred             CCcccccccccccH----HHHHHHHHHHHhCCCeEEEee
Confidence            34788999998653    234555666665  5777765

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.87  E-value=3e-06  Score=58.21  Aligned_cols=50  Identities=26%  Similarity=0.422  Sum_probs=28.2

Q ss_pred             CCCCCCChhhhHhhhhccccc-ccccCCccceEEEEEEECCeEEEEEEEeCCCCc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD   54 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~   54 (157)
                      ||-||||||||+|++.+.+.. ....|.+... ...+..+.   .+.+.||||--
T Consensus       118 vG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~-~~~i~~~~---~~~l~DTPGi~  168 (273)
T d1puja_         118 IGIPNVGKSTLINRLAKKNIAKTGDRPGITTS-QQWVKVGK---ELELLDTPGIL  168 (273)
T ss_dssp             EESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             EecCccchhhhhhhhhccceEEECCccccccc-ceEEECCC---CeEEecCCCcc
Confidence            699999999999999986552 2222222211 11112222   36889999953

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.76  E-value=2.1e-06  Score=57.40  Aligned_cols=18  Identities=39%  Similarity=0.361  Sum_probs=15.9

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||+|+|+..
T Consensus       103 ~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2         103 AGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EESHHHHHHHHHHHHCC-
T ss_pred             ECCCCccHHHHHHhhccH
Confidence            599999999999999864

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.61  E-value=4.8e-05  Score=52.03  Aligned_cols=75  Identities=12%  Similarity=-0.013  Sum_probs=50.6

Q ss_pred             hhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH
Q psy1873          61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA  140 (157)
Q Consensus        61 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~  140 (157)
                      ...++.+|++|+|.|..+|-+..+  ..+.+++.     .             .|.++|.||+|+.+...  .+....+.
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~~-----~-------------Kp~IlVlNK~DLv~~~~--~~~w~~~f   67 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRN--PMIEDILK-----N-------------KPRIMLLNKADKADAAV--TQQWKEHF   67 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSC--HHHHHHCS-----S-------------SCEEEEEECGGGSCHHH--HHHHHHHH
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCC--HHHHHHHc-----C-------------CCeEEEEECccCCchHH--HHHHHHHH
Confidence            456889999999999988876532  12222221     1             89999999999976422  22233333


Q ss_pred             HHhCCcEEEeccccCCC
Q psy1873         141 ESWKAGFVEASAKQDDY  157 (157)
Q Consensus       141 ~~~~~~~~e~Sa~~~~~  157 (157)
                      +..+...+.+||+++.+
T Consensus        68 ~~~~~~~i~isa~~~~~   84 (273)
T d1puja_          68 ENQGIRSLSINSVNGQG   84 (273)
T ss_dssp             HTTTCCEEECCTTTCTT
T ss_pred             HhcCCccceeecccCCC
Confidence            45567899999998764

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.54  E-value=2.1e-05  Score=51.71  Aligned_cols=84  Identities=21%  Similarity=0.092  Sum_probs=48.6

Q ss_pred             EEEEEEeCCCCccCcCch----hhh--ccCCCEEEEEEECCChh-hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc
Q psy1873          43 YDLKLVDTAGQDEYSIFP----AQY--SMDIHGYVLVYSITSHK-SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP  115 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~~~----~~~--~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p  115 (157)
                      +.+.++||+|...+....    ..+  .-..+-+++|.|.+... ..+.+..+...+                     .+
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~---------------------~~  151 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV---------------------GV  151 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT---------------------CC
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC---------------------CC
Confidence            467899999976554321    111  23456788888876553 333333332222                     22


Q ss_pred             EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873         116 IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus       116 ~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                      --+|.+|.|...  .  .-.+..++...++|+..++
T Consensus       152 ~~~I~TKlDe~~--~--~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         152 TGLVLTKLDGDA--R--GGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             CEEEEECGGGCS--S--CHHHHHHHHHHCCCEEEEC
T ss_pred             CeeEEeecCccc--c--chHHHHHHHHHCCCEEEEe
Confidence            347889999532  1  2446667777788765554

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.51  E-value=0.00026  Score=46.31  Aligned_cols=84  Identities=17%  Similarity=0.082  Sum_probs=50.3

Q ss_pred             EEEEEEeCCCCccCcCch----hhhc--------cCCCEEEEEEECCC-hhhHHHHHHHHHHHHHHhccccCCCCCCCCC
Q psy1873          43 YDLKLVDTAGQDEYSIFP----AQYS--------MDIHGYVLVYSITS-HKSFEVVQILYDKLLDMTGKIQNSSVKSPTS  109 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~~~----~~~~--------~~~~~~ilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~  109 (157)
                      +.+.+.||+|...+....    ..+.        ...+-.+||.|.+. .+....+..++..+                 
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-----------------  151 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-----------------  151 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-----------------
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-----------------
Confidence            567899999976554321    1111        13456788888774 44555555554443                 


Q ss_pred             CCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873         110 CVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus       110 ~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                          -+--+|.||.|....    .-.+..++...++|+..++
T Consensus       152 ----~~~~lI~TKlDet~~----~G~~l~~~~~~~~Pi~~i~  185 (207)
T d1okkd2         152 ----GLTGVIVTKLDGTAK----GGVLIPIVRTLKVPIKFVG  185 (207)
T ss_dssp             ----CCSEEEEECTTSSCC----CTTHHHHHHHHCCCEEEEE
T ss_pred             ----CCceEEEeccCCCCC----ccHHHHHHHHHCCCEEEEe
Confidence                344678999996331    1335556677788766555

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.40  E-value=6.5e-05  Score=49.42  Aligned_cols=84  Identities=13%  Similarity=0.099  Sum_probs=48.8

Q ss_pred             EEEEEEeCCCCccCcC--c-h---hhh--ccCCCEEEEEEECCChh-hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCC
Q psy1873          43 YDLKLVDTAGQDEYSI--F-P---AQY--SMDIHGYVLVYSITSHK-SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSS  113 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~--~-~---~~~--~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  113 (157)
                      +.+.+.||+|...+..  . .   ..+  .-..+-+++|.|.+... ..+.+...+..    .                 
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~----~-----------------  153 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQA----S-----------------  153 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHH----C-----------------
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcc----c-----------------
Confidence            4678999999755442  1 1   111  12345678888876543 33333332222    1                 


Q ss_pred             CcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873         114 VPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus       114 ~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                      .+--+|.||.|...    ..-....++.+.++|+..+|
T Consensus       154 ~~~~lI~TKlDet~----~~G~~l~~~~~~~lPi~~it  187 (211)
T d1j8yf2         154 KIGTIIITKMDGTA----KGGGALSAVAATGATIKFIG  187 (211)
T ss_dssp             TTEEEEEECTTSCS----CHHHHHHHHHTTTCCEEEEE
T ss_pred             CcceEEEecccCCC----cccHHHHHHHHHCcCEEEEe
Confidence            23457799999633    24556777788888866655

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.40  E-value=0.00012  Score=48.22  Aligned_cols=84  Identities=15%  Similarity=0.045  Sum_probs=47.9

Q ss_pred             EEEEEEeCCCCccCcCc----hhhh---cc-----CCCEEEEEEECCCh-hhHHHHHHHHHHHHHHhccccCCCCCCCCC
Q psy1873          43 YDLKLVDTAGQDEYSIF----PAQY---SM-----DIHGYVLVYSITSH-KSFEVVQILYDKLLDMTGKIQNSSVKSPTS  109 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~~----~~~~---~~-----~~~~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~  109 (157)
                      +.+.+.||+|...+...    ...+   ..     ..+-.+||.|.+.. +....+...+..+                 
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-----------------  156 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV-----------------  156 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS-----------------
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhcccc-----------------
Confidence            46789999996544421    1111   11     13567888887643 3344443333322                 


Q ss_pred             CCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873         110 CVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus       110 ~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                          -+--+|.+|.|...  .  .-.+...+...++|+..++
T Consensus       157 ----~~~~lI~TKlDe~~--~--~G~~l~~~~~~~~Pi~~i~  190 (213)
T d1vmaa2         157 ----NVTGIILTKLDGTA--K--GGITLAIARELGIPIKFIG  190 (213)
T ss_dssp             ----CCCEEEEECGGGCS--C--TTHHHHHHHHHCCCEEEEE
T ss_pred             ----CCceEEEecccCCC--c--ccHHHHHHHHHCCCEEEEe
Confidence                34458889999532  2  2345666777788766554

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.00035  Score=45.78  Aligned_cols=84  Identities=12%  Similarity=0.055  Sum_probs=48.8

Q ss_pred             EEEEEEeCCCCccCcCc-------hhhhcc-----CCCEEEEEEECCC-hhhHHHHHHHHHHHHHHhccccCCCCCCCCC
Q psy1873          43 YDLKLVDTAGQDEYSIF-------PAQYSM-----DIHGYVLVYSITS-HKSFEVVQILYDKLLDMTGKIQNSSVKSPTS  109 (157)
Q Consensus        43 ~~~~i~D~~g~~~~~~~-------~~~~~~-----~~~~~ilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~  109 (157)
                      +.+.+.||+|.......       +....+     ..+-.++|.|.+. .+....+..++..+                 
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-----------------  154 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-----------------  154 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS-----------------
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc-----------------
Confidence            46789999996443321       111122     2356788888764 44455554444332                 


Q ss_pred             CCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873         110 CVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus       110 ~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                          -+--+|.||.|-...    .-.+...+...++|+..++
T Consensus       155 ----~~~~lIlTKlDe~~~----~G~~l~~~~~~~~Pi~~i~  188 (211)
T d2qy9a2         155 ----GLTGITLTKLDGTAK----GGVIFSVADQFGIPIRYIG  188 (211)
T ss_dssp             ----CCCEEEEECCTTCTT----TTHHHHHHHHHCCCEEEEE
T ss_pred             ----CCceEEEeecCCCCC----ccHHHHHHHHHCCCEEEEe
Confidence                345688899996332    2345566777788766655

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=5.2e-05  Score=47.46  Aligned_cols=17  Identities=18%  Similarity=0.444  Sum_probs=15.5

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||+++++.
T Consensus         8 tG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           8 AAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            49999999999999974

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.02  E-value=8.3e-05  Score=46.98  Aligned_cols=17  Identities=35%  Similarity=0.559  Sum_probs=15.6

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|+|||||++.+++
T Consensus         6 ~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           6 TGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCcHHHHHHHHHHh
Confidence            59999999999999975

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.90  E-value=9.9e-05  Score=46.64  Aligned_cols=17  Identities=35%  Similarity=0.423  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|||||||+++|.+
T Consensus        13 ~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2          13 LGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             ECCTTSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999864

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.83  E-value=0.00015  Score=45.42  Aligned_cols=17  Identities=35%  Similarity=0.753  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|.+|||||||+.+++.
T Consensus         7 ~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           7 VGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHH
Confidence            59999999999999864

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.79  E-value=0.00017  Score=45.12  Aligned_cols=17  Identities=29%  Similarity=0.518  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+|||||||++++|.+
T Consensus        10 ~G~pGsGKTTia~~La~   26 (173)
T d1rkba_          10 TGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999854

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.77  E-value=0.00022  Score=43.79  Aligned_cols=17  Identities=29%  Similarity=0.591  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|+|||||||+++++..
T Consensus         8 ~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           8 IGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999865

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00047  Score=47.08  Aligned_cols=53  Identities=23%  Similarity=0.139  Sum_probs=33.9

Q ss_pred             CCCCCCChhhhHhhhhccccccc-----ccCCccceEEEEEE-ECCeEEEEEEEeCCCCc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQFVDS-----YDPTIENTFVKTTR-MNNQDYDLKLVDTAGQD   54 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~~~~i~D~~g~~   54 (157)
                      +|+.++|||+|+|++.+..+.-.     ...|.| .+.+... .++....+.+.|+.|..
T Consensus        38 ~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~G-iw~~~~~~~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          38 VGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKG-IWMWCVPHPKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             EEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCS-EEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             ECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCc-eEEEEeeccCCCCceEEEEeccccc
Confidence            59999999999999997664221     223444 2222222 24455667899999864

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.64  E-value=0.0003  Score=43.83  Aligned_cols=17  Identities=29%  Similarity=0.385  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++||||||++++|.+
T Consensus         8 ~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           8 TGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999874

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.56  E-value=0.00031  Score=45.43  Aligned_cols=17  Identities=24%  Similarity=0.430  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|.|||||||+.++|.+
T Consensus         8 ~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           8 VGLPARGKTYISKKLTR   24 (213)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999874

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.00043  Score=43.44  Aligned_cols=17  Identities=29%  Similarity=0.384  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|+|||||+..+..
T Consensus         7 tG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           7 TGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             ESCCSSCHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            49999999999999874

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.47  E-value=0.00044  Score=43.79  Aligned_cols=17  Identities=24%  Similarity=0.495  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|.|||||||++.++..
T Consensus        20 ~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          20 VGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             ECCTTSSHHHHHHHHTG
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.00042  Score=42.60  Aligned_cols=17  Identities=29%  Similarity=0.470  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++||||||+.+.|..
T Consensus         8 ~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           8 VGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988854

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.0005  Score=45.72  Aligned_cols=17  Identities=29%  Similarity=0.364  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||++.+.+
T Consensus        32 iGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          32 VGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             ECCTTSSHHHHHHHHHT
T ss_pred             ECCCCChHHHHHHHHhc
Confidence            69999999999998865

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.36  E-value=0.00051  Score=45.62  Aligned_cols=17  Identities=29%  Similarity=0.217  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||++.+.+
T Consensus        37 iG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          37 MGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             ECSTTSSHHHHHHHHTT
T ss_pred             ECCCCCCcchhhHhccC
Confidence            69999999999998765

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.35  E-value=0.00053  Score=44.55  Aligned_cols=17  Identities=24%  Similarity=0.366  Sum_probs=15.7

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+.|+|||||++.+++
T Consensus        33 ~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          33 HGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             ECCTTSSHHHHHHHHTT
T ss_pred             ECCCCChHHHHHHHHhc
Confidence            59999999999999976

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.33  E-value=0.00039  Score=44.56  Aligned_cols=17  Identities=24%  Similarity=0.356  Sum_probs=15.3

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+|||||||++.+|.+
T Consensus        12 ~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_          12 LGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999864

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.28  E-value=0.00055  Score=43.50  Aligned_cols=18  Identities=28%  Similarity=0.327  Sum_probs=15.9

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +||+|||||||++.+.+.
T Consensus         8 ~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           8 SGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            599999999999998754

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.28  E-value=0.00067  Score=42.33  Aligned_cols=17  Identities=24%  Similarity=0.356  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++||||||+.+.|.+
T Consensus        11 ~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_          11 TGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHH
Confidence            49999999999999864

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.00057  Score=42.59  Aligned_cols=17  Identities=29%  Similarity=0.501  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++||||||+.+.|.+
T Consensus        12 ~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_          12 MGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999854

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.26  E-value=0.00058  Score=43.12  Aligned_cols=17  Identities=29%  Similarity=0.483  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+|||||||++..+.+
T Consensus         6 ~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           6 MGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988753

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.26  E-value=0.00063  Score=45.39  Aligned_cols=18  Identities=17%  Similarity=0.174  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+.+-
T Consensus        38 iGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          38 LGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             ECCTTSSHHHHHHHHHTS
T ss_pred             ECCCCChHHHHHHHHHcC
Confidence            699999999999998763

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.24  E-value=0.00065  Score=45.35  Aligned_cols=17  Identities=24%  Similarity=0.284  Sum_probs=15.7

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||++.+.+
T Consensus        30 iGpnGaGKSTll~~i~G   46 (240)
T d2onka1          30 LGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             ECCTTSSHHHHHHHHHT
T ss_pred             ECCCCChHHHHHHHHHc
Confidence            69999999999999876

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.21  E-value=0.0008  Score=42.30  Aligned_cols=16  Identities=25%  Similarity=0.281  Sum_probs=14.2

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      .|++||||||+++++.
T Consensus         7 ~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           7 TGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            3999999999999874

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.18  E-value=0.00069  Score=43.28  Aligned_cols=18  Identities=28%  Similarity=0.337  Sum_probs=16.0

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +||+|||||||+++|++.
T Consensus         7 ~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           7 SGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999999754

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.17  E-value=0.00069  Score=42.97  Aligned_cols=17  Identities=29%  Similarity=0.521  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+|||||||++.+|.+
T Consensus         6 ~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           6 MGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988864

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.00086  Score=44.52  Aligned_cols=17  Identities=29%  Similarity=0.468  Sum_probs=15.8

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      ||+.|+|||||++.+.+
T Consensus        31 iG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          31 VGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             BCCTTSSHHHHHHHHHT
T ss_pred             ECCCCCcHHHHHHHHhC
Confidence            69999999999999876

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.15  E-value=0.0008  Score=44.43  Aligned_cols=16  Identities=25%  Similarity=0.422  Sum_probs=14.8

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      ||||+|||++++.+..
T Consensus        42 GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          42 GPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             SSTTSSHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHh
Confidence            9999999999998875

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.00075  Score=42.93  Aligned_cols=18  Identities=17%  Similarity=0.457  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +||+||||+||+++|++.
T Consensus         9 ~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           9 LGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999999854

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.13  E-value=0.00087  Score=44.32  Aligned_cols=16  Identities=25%  Similarity=0.428  Sum_probs=14.9

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      ||||+||||+++.+.+
T Consensus        42 GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          42 GPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCTTSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999999875

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.13  E-value=0.00058  Score=43.59  Aligned_cols=17  Identities=18%  Similarity=0.147  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+|||||||++..|.+
T Consensus         9 ~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           9 SGAPASGKGTQCELIKT   25 (189)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988853

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.08  E-value=0.00083  Score=42.51  Aligned_cols=17  Identities=18%  Similarity=0.520  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+|||||||+..+|.+
T Consensus         6 ~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           6 LGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999864

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.08  E-value=0.00099  Score=41.47  Aligned_cols=16  Identities=31%  Similarity=0.316  Sum_probs=14.8

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |++||||||+.+.|.+
T Consensus        10 G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_          10 GGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CCTTSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999999865

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.08  E-value=0.0008  Score=43.13  Aligned_cols=17  Identities=24%  Similarity=0.391  Sum_probs=15.3

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+|||||||++.+|.+
T Consensus        14 ~GppGSGKsT~a~~La~   30 (196)
T d1ukza_          14 LGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999864

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.08  E-value=0.00086  Score=44.77  Aligned_cols=17  Identities=18%  Similarity=0.270  Sum_probs=15.6

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||++.+.+
T Consensus        35 iG~sGaGKSTll~~i~g   51 (240)
T d1g2912          35 LGPSGCGKTTTLRMIAG   51 (240)
T ss_dssp             ECSTTSSHHHHHHHHHT
T ss_pred             ECCCCChHHHHHHHHhc
Confidence            69999999999998875

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.06  E-value=0.00085  Score=42.80  Aligned_cols=17  Identities=18%  Similarity=0.366  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+|||||||++..|.+
T Consensus         9 ~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           9 LGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998864

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.00084  Score=43.71  Aligned_cols=18  Identities=28%  Similarity=0.257  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +||+|||||||+++++..
T Consensus         8 ~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           8 SAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            599999999999999864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0009  Score=43.22  Aligned_cols=18  Identities=22%  Similarity=0.405  Sum_probs=15.8

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      ||+||||||+++..+...
T Consensus        49 vG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          49 IGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             EecCCcccHHHHHHHHHH
Confidence            699999999999888753

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.04  E-value=0.00091  Score=41.75  Aligned_cols=16  Identities=25%  Similarity=0.526  Sum_probs=14.0

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|.+||||||+...|.
T Consensus        12 ~G~~GsGKTTia~~La   27 (183)
T d1m8pa3          12 TGYMNSGKDAIARALQ   27 (183)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999988775

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.03  E-value=0.00097  Score=44.65  Aligned_cols=17  Identities=29%  Similarity=0.374  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|+||+|||+|+..+.+
T Consensus        38 ~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          38 GGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             ECCTTSCTHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998865

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.01  E-value=0.00086  Score=42.63  Aligned_cols=16  Identities=31%  Similarity=0.520  Sum_probs=14.4

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |++|||||||+++|..
T Consensus        29 G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          29 GLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             ECTTSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8999999999999853

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.00  E-value=0.00099  Score=44.52  Aligned_cols=17  Identities=29%  Similarity=0.395  Sum_probs=15.5

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|+|||||++.+.+
T Consensus        35 vG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          35 VGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             ECSTTSSHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            69999999999999875

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.00078  Score=44.96  Aligned_cols=17  Identities=29%  Similarity=0.237  Sum_probs=15.5

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||++.+.+
T Consensus        37 iG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          37 IGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             EESTTSSHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHcC
Confidence            69999999999999876

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.99  E-value=0.001  Score=41.51  Aligned_cols=17  Identities=24%  Similarity=0.399  Sum_probs=14.8

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++||||||+.+.+.+
T Consensus        10 ~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1          10 SGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EECTTSCHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988864

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=95.98  E-value=0.00064  Score=45.08  Aligned_cols=18  Identities=17%  Similarity=0.139  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|||||||++.+.+-
T Consensus        32 iGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          32 LGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             ECCCTHHHHHHHHHHHTS
T ss_pred             ECCCCCcHHHHHHHHhcC
Confidence            699999999999999763

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.97  E-value=0.0011  Score=44.27  Aligned_cols=18  Identities=17%  Similarity=0.141  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      ||+.|+|||||++.+.+-
T Consensus        34 vG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          34 IGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             ECCTTSSHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            699999999999998763

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.94  E-value=0.0011  Score=44.30  Aligned_cols=17  Identities=24%  Similarity=0.190  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|+|||||++-+.+
T Consensus        34 vG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          34 AGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             ECCTTSSHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999999875

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0011  Score=44.56  Aligned_cols=17  Identities=24%  Similarity=0.423  Sum_probs=15.5

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      ||++|||||||++.+.+
T Consensus        46 vG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          46 VGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             ECSTTSSHHHHHHHHTT
T ss_pred             ECCCCCcHHHHHHHHhc
Confidence            69999999999999875

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.93  E-value=0.0011  Score=44.24  Aligned_cols=18  Identities=17%  Similarity=0.222  Sum_probs=16.1

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+-
T Consensus        38 iGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          38 IGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             ECSTTSSHHHHHHHHTTS
T ss_pred             ECCCCCcHHHHHHHHhCC
Confidence            699999999999999763

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.92  E-value=0.0011  Score=42.51  Aligned_cols=17  Identities=29%  Similarity=0.474  Sum_probs=15.3

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+|||||||+..+|.+
T Consensus        12 iG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1          12 MGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999999864

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.90  E-value=0.0013  Score=44.02  Aligned_cols=18  Identities=28%  Similarity=0.421  Sum_probs=15.7

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|+||+|||++++.+.+.
T Consensus        52 ~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          52 IGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             TTCCSSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            399999999999998753

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0011  Score=42.28  Aligned_cols=17  Identities=24%  Similarity=0.452  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+|||||||++.++.+
T Consensus         7 ~GppGSGKsT~a~~La~   23 (194)
T d1teva_           7 LGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.89  E-value=0.0011  Score=41.89  Aligned_cols=17  Identities=18%  Similarity=0.356  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+|||||||+...|.+
T Consensus         8 ~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           8 IGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.87  E-value=0.00092  Score=42.83  Aligned_cols=17  Identities=24%  Similarity=0.335  Sum_probs=15.3

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+|||||||++.+|.+
T Consensus        14 ~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          14 VGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.00092  Score=42.21  Aligned_cols=17  Identities=18%  Similarity=0.343  Sum_probs=14.8

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|+|||||||++.+|.+
T Consensus         6 ~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           6 LGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988853

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.85  E-value=0.001  Score=44.81  Aligned_cols=17  Identities=24%  Similarity=0.399  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      ||++|||||||++.+.+
T Consensus        47 vG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          47 VGRSGSGKSTIASLITR   63 (253)
T ss_dssp             EECTTSSHHHHHHHHTT
T ss_pred             ECCCCChHHHHHHHHhc
Confidence            69999999999998875

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.82  E-value=0.0013  Score=42.19  Aligned_cols=17  Identities=29%  Similarity=0.397  Sum_probs=15.3

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +||+|||||||+.+|..
T Consensus         6 ~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           6 SGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999865

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.81  E-value=0.0013  Score=44.61  Aligned_cols=18  Identities=22%  Similarity=0.328  Sum_probs=15.9

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      ||+||||||+++..|...
T Consensus        45 VG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          45 VGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            699999999999998754

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.75  E-value=0.0016  Score=43.27  Aligned_cols=17  Identities=18%  Similarity=0.302  Sum_probs=15.5

Q ss_pred             CCCCCChhhhHhhhhcc
Q psy1873           2 GYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         2 G~~~~GKssli~~~~~~   18 (157)
                      ||||+||||+++.+.+.
T Consensus        59 GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          59 GPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             CSTTSSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999999763

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.74  E-value=0.0015  Score=40.75  Aligned_cols=16  Identities=25%  Similarity=0.513  Sum_probs=14.1

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|.+||||||+.+.+.
T Consensus         7 iG~~G~GKSTig~~La   22 (165)
T d2iyva1           7 VGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999988874

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.73  E-value=0.0015  Score=44.02  Aligned_cols=17  Identities=24%  Similarity=0.184  Sum_probs=15.6

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||++.+.+
T Consensus        34 iG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          34 IGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             ECCTTSSHHHHHHHHTT
T ss_pred             ECCCCCcHHHHHHHHHc
Confidence            69999999999999875

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.71  E-value=0.0015  Score=43.91  Aligned_cols=18  Identities=28%  Similarity=0.242  Sum_probs=16.2

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|+.|+|||||++.+.+-
T Consensus        36 iG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          36 IGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             ECSTTSSHHHHHHHHTTS
T ss_pred             ECCCCCcHHHHHHHHHCC
Confidence            699999999999999763

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.67  E-value=0.0013  Score=44.98  Aligned_cols=17  Identities=29%  Similarity=0.442  Sum_probs=15.6

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|+|||||++.+.+
T Consensus        68 vG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          68 TGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             EESTTSSHHHHHHHHHT
T ss_pred             ECCCCChHHHHHHHHhC
Confidence            69999999999999875

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.65  E-value=0.0018  Score=42.47  Aligned_cols=17  Identities=24%  Similarity=0.446  Sum_probs=15.3

Q ss_pred             CCCCCChhhhHhhhhcc
Q psy1873           2 GYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         2 G~~~~GKssli~~~~~~   18 (157)
                      |++|+|||++++.+.+.
T Consensus        52 Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          52 GPPGVGKTTAALALARE   68 (231)
T ss_dssp             SCTTSSHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHH
Confidence            99999999999998753

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.65  E-value=0.0016  Score=40.71  Aligned_cols=16  Identities=19%  Similarity=0.478  Sum_probs=14.4

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|.+||||||+.+.+.
T Consensus         8 ~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           8 VGARGCGMTTVGRELA   23 (170)
T ss_dssp             ESCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999998884

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.65  E-value=0.0069  Score=37.57  Aligned_cols=17  Identities=29%  Similarity=0.548  Sum_probs=15.4

Q ss_pred             CCCCCChhhhHhhhhcc
Q psy1873           2 GYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         2 G~~~~GKssli~~~~~~   18 (157)
                      |+-|+|||||++.+++.
T Consensus        40 G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          40 GDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             CSTTSSHHHHHHHHHHH
T ss_pred             cCCCccHHHHHHHHHhh
Confidence            88999999999999864

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.60  E-value=0.0018  Score=40.25  Aligned_cols=16  Identities=31%  Similarity=0.625  Sum_probs=14.2

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|.+||||||+...+.
T Consensus         6 iG~~GsGKsTi~k~La   21 (161)
T d1viaa_           6 IGFMGSGKSTLARALA   21 (161)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999988874

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.53  E-value=0.00086  Score=44.79  Aligned_cols=17  Identities=18%  Similarity=0.333  Sum_probs=15.7

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||++.+.+
T Consensus        37 iG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          37 LGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             ECSCHHHHHHHHHHHHT
T ss_pred             ECCCCCcHHHHHHHHHc
Confidence            69999999999999876

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.53  E-value=0.0018  Score=40.81  Aligned_cols=15  Identities=33%  Similarity=0.470  Sum_probs=13.9

Q ss_pred             CCCCCChhhhHhhhh
Q psy1873           2 GYRSVGKSSLSIQFV   16 (157)
Q Consensus         2 G~~~~GKssli~~~~   16 (157)
                      |.+||||||+++.+.
T Consensus         8 G~~GsGKTT~~~~La   22 (194)
T d1nksa_           8 GIPGVGKSTVLAKVK   22 (194)
T ss_dssp             ECTTSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            899999999998885

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.00086  Score=42.62  Aligned_cols=17  Identities=24%  Similarity=0.554  Sum_probs=14.8

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|.|||||||+.+.|..
T Consensus        25 ~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          25 TGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             ESSCHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998853

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.49  E-value=0.0023  Score=41.98  Aligned_cols=17  Identities=24%  Similarity=0.348  Sum_probs=15.3

Q ss_pred             CCCCCChhhhHhhhhcc
Q psy1873           2 GYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         2 G~~~~GKssli~~~~~~   18 (157)
                      ||+|+||||+++.+++.
T Consensus        40 Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          40 GPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CSTTSSHHHHHHHHHHH
T ss_pred             CCCCCChHHHHHHHHHH
Confidence            99999999999998753

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.49  E-value=0.0023  Score=41.84  Aligned_cols=16  Identities=19%  Similarity=0.347  Sum_probs=14.5

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      ||+|+||||+++.+.+
T Consensus        43 Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          43 GMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CSTTSSHHHHHHHHHH
T ss_pred             CCCCCCchhhHHHHHH
Confidence            9999999999988864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.48  E-value=0.0018  Score=43.57  Aligned_cols=17  Identities=29%  Similarity=0.298  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||||++-+.+
T Consensus        50 vG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          50 VGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             ECSTTSSHHHHHTTTTT
T ss_pred             ECCCCCcHHHHHHHHHh
Confidence            69999999999988764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.40  E-value=0.0026  Score=42.31  Aligned_cols=18  Identities=17%  Similarity=0.202  Sum_probs=15.6

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||++++.+...
T Consensus        49 ~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          49 LGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998753

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.29  E-value=0.0027  Score=41.97  Aligned_cols=18  Identities=17%  Similarity=0.418  Sum_probs=15.7

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+||||++..+.+.
T Consensus        39 ~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          39 YGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             ECSTTSSHHHHHHTHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            399999999999998764

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.28  E-value=0.0025  Score=44.02  Aligned_cols=17  Identities=24%  Similarity=0.524  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +||||||||.|++.+.+
T Consensus        55 ~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          55 IGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhh
Confidence            59999999999999865

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.28  E-value=0.0029  Score=41.33  Aligned_cols=17  Identities=24%  Similarity=0.341  Sum_probs=15.5

Q ss_pred             CCCCCChhhhHhhhhcc
Q psy1873           2 GYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         2 G~~~~GKssli~~~~~~   18 (157)
                      |++|+||||++..+++.
T Consensus        42 Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          42 GPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CSSSSSHHHHHHHHHHH
T ss_pred             CCCCCChhHHHHHHHHH
Confidence            99999999999999764

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.26  E-value=0.003  Score=42.19  Aligned_cols=17  Identities=24%  Similarity=0.421  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .||||+|||++++.+.+
T Consensus        46 ~GppGtGKT~la~alA~   62 (246)
T d1d2na_          46 EGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHhh
Confidence            39999999999999864

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.26  E-value=0.0031  Score=40.15  Aligned_cols=16  Identities=25%  Similarity=0.353  Sum_probs=14.6

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |..||||||+++.|.+
T Consensus        16 G~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1          16 GNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CSTTSCHHHHHHTTGG
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8999999999999864

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0032  Score=40.69  Aligned_cols=15  Identities=40%  Similarity=0.527  Sum_probs=13.7

Q ss_pred             CCCCCChhhhHhhhh
Q psy1873           2 GYRSVGKSSLSIQFV   16 (157)
Q Consensus         2 G~~~~GKssli~~~~   16 (157)
                      |++|||||||.++|.
T Consensus         9 G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           9 GGTASGKSSVCAKIV   23 (213)
T ss_dssp             CSTTSSHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            899999999998874

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.16  E-value=0.0026  Score=42.33  Aligned_cols=17  Identities=35%  Similarity=0.495  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|+|||||+.+++.
T Consensus        35 ~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          35 LGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             EcCCCCcHHHHHHHHHH
Confidence            39999999999999864

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.99  E-value=0.004  Score=40.37  Aligned_cols=16  Identities=31%  Similarity=0.378  Sum_probs=14.4

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      ||+||||||+...+..
T Consensus        10 Gp~GsGKgT~ak~La~   25 (223)
T d1q3ta_          10 GPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CSSCSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999988853

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=94.89  E-value=0.0045  Score=41.32  Aligned_cols=17  Identities=29%  Similarity=0.431  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|+||+|||++++.+.+
T Consensus        48 ~GppGtGKT~la~aia~   64 (247)
T d1ixza_          48 VGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ecCCCCChhHHHHHHHH
Confidence            39999999999999985

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.81  E-value=0.0033  Score=44.82  Aligned_cols=17  Identities=24%  Similarity=0.448  Sum_probs=14.5

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      ||+||||||+|+..|..
T Consensus        49 vG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          49 IGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             EECTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999976654

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=94.74  E-value=0.0052  Score=39.63  Aligned_cols=16  Identities=25%  Similarity=0.453  Sum_probs=14.3

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |||||||+|+...+.+
T Consensus        10 GppGSGKgT~ak~La~   25 (225)
T d1ckea_          10 GPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             CCTTSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999988854

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.71  E-value=0.0053  Score=39.35  Aligned_cols=16  Identities=25%  Similarity=0.412  Sum_probs=14.2

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |..||||||++..|.+
T Consensus         7 G~dGsGKST~~~~L~~   22 (208)
T d1gsia_           7 GVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             CSTTSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8999999999988764

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.71  E-value=0.0053  Score=41.15  Aligned_cols=16  Identities=19%  Similarity=0.333  Sum_probs=14.8

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      ||||+|||++++.+..
T Consensus        45 GppGtGKT~l~~ala~   60 (258)
T d1e32a2          45 GPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CCTTSSHHHHHHHHHH
T ss_pred             cCCCCCchHHHHHHHH
Confidence            9999999999999875

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.0053  Score=41.19  Aligned_cols=17  Identities=24%  Similarity=0.350  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .||||+|||++++.+..
T Consensus        51 ~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          51 VGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             eCCCCCCccHHHHHHHH
Confidence            39999999999999874

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.67  E-value=0.0026  Score=40.23  Aligned_cols=16  Identities=38%  Similarity=0.464  Sum_probs=14.4

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|+.|+|||||+..+.
T Consensus        30 ~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          30 SGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HSCCSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999874

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.0061  Score=38.83  Aligned_cols=18  Identities=17%  Similarity=0.231  Sum_probs=15.5

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|+||+|||+|+..++..
T Consensus        29 ~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          29 FGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHH
Confidence            399999999999988753

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.49  E-value=0.0067  Score=39.35  Aligned_cols=16  Identities=31%  Similarity=0.634  Sum_probs=14.4

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |.||||||||.+.|..
T Consensus        31 GlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          31 GLSASGKSTLAVELEH   46 (208)
T ss_dssp             CSTTSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999988864

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.36  E-value=0.0057  Score=39.44  Aligned_cols=16  Identities=25%  Similarity=0.434  Sum_probs=14.3

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |..||||||++..|.+
T Consensus         9 G~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           9 GLEGAGKTTARNVVVE   24 (210)
T ss_dssp             ECTTSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8999999999998764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.0072  Score=39.50  Aligned_cols=16  Identities=25%  Similarity=0.314  Sum_probs=14.5

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |+.||||||++..|.+
T Consensus         9 G~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           9 GNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             CSTTSSHHHHHTTTGG
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8999999999998865

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.25  E-value=0.0074  Score=41.88  Aligned_cols=19  Identities=16%  Similarity=0.146  Sum_probs=16.3

Q ss_pred             CCCCCCChhhhHhhhhccc
Q psy1873           1 MGYRSVGKSSLSIQFVDGQ   19 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~~   19 (157)
                      .|+.|+|||||++.++..-
T Consensus       172 ~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         172 CGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             EESTTSSHHHHHHHHGGGS
T ss_pred             EeeccccchHHHHHHhhhc
Confidence            3899999999999998643

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.20  E-value=0.0081  Score=40.41  Aligned_cols=17  Identities=24%  Similarity=0.356  Sum_probs=15.3

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++|+|||+|++.+..
T Consensus        47 ~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          47 YGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             BCCTTSSHHHHHHHHHH
T ss_pred             ECCCCCcchhHHHHHHH
Confidence            39999999999999875

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.83  E-value=0.0087  Score=38.98  Aligned_cols=18  Identities=28%  Similarity=0.266  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|+||+|||+|+..|...
T Consensus        40 ~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          40 FGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EESTTSSHHHHHHHHTTT
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            389999999999988643

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.49  E-value=0.0098  Score=40.38  Aligned_cols=15  Identities=27%  Similarity=0.350  Sum_probs=13.7

Q ss_pred             CCCCCCChhhhHhhh
Q psy1873           1 MGYRSVGKSSLSIQF   15 (157)
Q Consensus         1 vG~~~~GKssli~~~   15 (157)
                      +|+.|||||+++.++
T Consensus        30 vG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          30 VGPNGSGKSNIIDAI   44 (308)
T ss_dssp             ECCTTTCSTHHHHHH
T ss_pred             ECCCCCcHHHHHHHH
Confidence            699999999999876

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=93.47  E-value=0.0073  Score=41.83  Aligned_cols=16  Identities=31%  Similarity=0.445  Sum_probs=14.5

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      +|+||+|||+|++++.
T Consensus        34 ~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          34 FGDRGTGKSTAVRALA   49 (333)
T ss_dssp             ECCGGGCTTHHHHHHH
T ss_pred             ECCCCccHHHHHHHHH
Confidence            4999999999999885

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.36  E-value=0.012  Score=38.66  Aligned_cols=18  Identities=22%  Similarity=0.220  Sum_probs=15.6

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|+||+|||+|...|+..
T Consensus        42 ~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          42 FGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            389999999999998754

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.32  E-value=0.015  Score=39.54  Aligned_cols=15  Identities=47%  Similarity=0.470  Sum_probs=13.0

Q ss_pred             CCCCCChhhhHhhhh
Q psy1873           2 GYRSVGKSSLSIQFV   16 (157)
Q Consensus         2 G~~~~GKssli~~~~   16 (157)
                      |.+|||||||...+.
T Consensus        34 G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          34 GPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCTTSSHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            899999999987663

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.30  E-value=0.012  Score=38.59  Aligned_cols=16  Identities=31%  Similarity=0.430  Sum_probs=14.4

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |..||||||+++.|.+
T Consensus         9 G~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           9 GNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             ECTTSSHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHH
Confidence            8899999999999864

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.012  Score=37.99  Aligned_cols=16  Identities=38%  Similarity=0.551  Sum_probs=13.5

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |..||||||++..+.+
T Consensus        10 G~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_          10 GVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             ESTTSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8999999998877643

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.12  E-value=0.015  Score=40.86  Aligned_cols=17  Identities=24%  Similarity=0.444  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .||||+|||+++..+.+
T Consensus       160 ~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         160 KGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998864

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.05  E-value=0.016  Score=37.55  Aligned_cols=17  Identities=24%  Similarity=0.194  Sum_probs=15.4

Q ss_pred             CCCCCChhhhHhhhhcc
Q psy1873           2 GYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         2 G~~~~GKssli~~~~~~   18 (157)
                      |++|+|||.|++.+++.
T Consensus        43 G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          43 GSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             CSSSSSHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHH
Confidence            99999999999998753

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.04  E-value=0.014  Score=38.10  Aligned_cols=17  Identities=35%  Similarity=0.589  Sum_probs=15.2

Q ss_pred             CCCCCChhhhHhhhhcc
Q psy1873           2 GYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         2 G~~~~GKssli~~~~~~   18 (157)
                      |+||+|||+|+.++..+
T Consensus        33 G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          33 GATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             ECTTSSHHHHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHHHH
Confidence            89999999999998754

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=92.87  E-value=0.017  Score=36.38  Aligned_cols=16  Identities=25%  Similarity=0.349  Sum_probs=14.2

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |.+||||||+++.|..
T Consensus        10 G~~gSGKstva~~l~~   25 (191)
T d1uf9a_          10 GNIGSGKSTVAALLRS   25 (191)
T ss_dssp             ECTTSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8999999999988754

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=92.67  E-value=0.017  Score=41.71  Aligned_cols=16  Identities=25%  Similarity=0.546  Sum_probs=14.7

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      |||+|||||-|++++.
T Consensus        55 iGPTGvGKTlLAr~LA   70 (443)
T d1g41a_          55 IGPTGVGKTEIARRLA   70 (443)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6999999999999984

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=92.61  E-value=0.37  Score=29.72  Aligned_cols=55  Identities=13%  Similarity=0.103  Sum_probs=39.8

Q ss_pred             CChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873          77 TSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS  151 (157)
Q Consensus        77 ~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  151 (157)
                      +|+.+++.......+++....                .|++++|.......    ..++..+|++..++|++.+-
T Consensus         3 sd~~~l~~~v~~~~~~l~~Ak----------------rPvIi~G~g~~~~~----a~~~l~~lae~~~~Pv~tt~   57 (175)
T d1zpda1           3 SDEASLNAAVDETLKFIANRD----------------KVAVLVGSKLRAAG----AEEAAVKFTDALGGAVATMA   57 (175)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCS----------------CEEEEECTTTTTTT----CHHHHHHHHHHHCCCEEEEG
T ss_pred             CChHHHHHHHHHHHHHHHcCC----------------CEEEEECcCccccc----hHHHHHHHHHhhceeEEecc
Confidence            567777766555444444433                99999998887543    36789999999999988654

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.53  E-value=0.017  Score=37.40  Aligned_cols=16  Identities=19%  Similarity=0.295  Sum_probs=13.8

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |..||||||+++.|.+
T Consensus        10 G~DGsGKST~~~~L~~   25 (214)
T d1tmka_          10 GLDRTGKTTQCNILYK   25 (214)
T ss_dssp             ESTTSSHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHH
Confidence            8899999999988753

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=92.53  E-value=0.018  Score=39.61  Aligned_cols=15  Identities=33%  Similarity=0.381  Sum_probs=13.4

Q ss_pred             CCCCCChhhhHhhhh
Q psy1873           2 GYRSVGKSSLSIQFV   16 (157)
Q Consensus         2 G~~~~GKssli~~~~   16 (157)
                      |++||||||+.+.+.
T Consensus        87 G~sgSGKSTla~~L~  101 (308)
T d1sq5a_          87 GSVAVGKSTTARVLQ  101 (308)
T ss_dssp             ECTTSSHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHH
Confidence            899999999988874

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.43  E-value=0.024  Score=37.03  Aligned_cols=18  Identities=28%  Similarity=0.290  Sum_probs=15.7

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||+|...|+..
T Consensus        43 ~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          43 FGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             ECCTTCTHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            399999999999999753

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=92.30  E-value=0.02  Score=39.57  Aligned_cols=17  Identities=24%  Similarity=0.325  Sum_probs=15.2

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|+||+|||.|++.+..
T Consensus       129 ~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         129 TGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             ECSSSSCHHHHHHHHHH
T ss_pred             ECCCCccHHHHHHHHHH
Confidence            39999999999999864

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.26  E-value=0.02  Score=37.13  Aligned_cols=18  Identities=22%  Similarity=0.171  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||+|+..+.-+
T Consensus        40 ~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          40 AGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHH
Confidence            389999999999998743

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.26  E-value=0.024  Score=37.18  Aligned_cols=16  Identities=38%  Similarity=0.609  Sum_probs=14.4

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |++|+|||++++.+.+
T Consensus        41 Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          41 GTRGVGKTSIARLLAK   56 (239)
T ss_dssp             CSTTSSHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHH
Confidence            9999999999988764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.21  E-value=0.021  Score=39.34  Aligned_cols=17  Identities=29%  Similarity=0.559  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +||+|||||.|+..+.+
T Consensus        58 ~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          58 AGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCcchhHHHHHHHHh
Confidence            59999999999998854

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=92.18  E-value=0.03  Score=35.23  Aligned_cols=18  Identities=33%  Similarity=0.530  Sum_probs=15.6

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+||||+...++..
T Consensus        20 ~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          20 TGDSGVGKSETALELVQR   37 (176)
T ss_dssp             ECCTTSCHHHHHHHHHHT
T ss_pred             EeCCCCCHHHHHHHHHHc
Confidence            499999999999998754

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.11  E-value=0.016  Score=39.41  Aligned_cols=15  Identities=27%  Similarity=0.428  Sum_probs=10.8

Q ss_pred             CCCCCChhhhHhhhh
Q psy1873           2 GYRSVGKSSLSIQFV   16 (157)
Q Consensus         2 G~~~~GKssli~~~~   16 (157)
                      |++||||||+.++|.
T Consensus        11 G~SGSGKTTva~~l~   25 (288)
T d1a7ja_          11 GSSGAGTSTVKHTFD   25 (288)
T ss_dssp             SCC---CCTHHHHHH
T ss_pred             CCCCCcHHHHHHHHH
Confidence            899999999999875

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.71  E-value=0.032  Score=35.88  Aligned_cols=16  Identities=13%  Similarity=0.258  Sum_probs=14.4

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |++|+|||+++..+..
T Consensus        31 Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          31 ALPGMGDDALIYALSR   46 (207)
T ss_dssp             CCTTSCHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHH
Confidence            9999999999998764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=91.66  E-value=0.026  Score=36.32  Aligned_cols=15  Identities=47%  Similarity=0.751  Sum_probs=13.4

Q ss_pred             CCCCCChhhhHhhhh
Q psy1873           2 GYRSVGKSSLSIQFV   16 (157)
Q Consensus         2 G~~~~GKssli~~~~   16 (157)
                      |++|+|||+|+..++
T Consensus        33 G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          33 GTSGTGKTLFSIQFL   47 (242)
T ss_dssp             ESTTSSHHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHH
Confidence            899999999997765

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=91.47  E-value=0.032  Score=35.11  Aligned_cols=18  Identities=22%  Similarity=0.541  Sum_probs=15.6

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||++...|...
T Consensus        21 ~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          21 TGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EESSSSSHHHHHHHHHTT
T ss_pred             EcCCCCCHHHHHHHHHHc
Confidence            389999999999998764

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.30  E-value=0.031  Score=39.32  Aligned_cols=15  Identities=27%  Similarity=0.379  Sum_probs=13.9

Q ss_pred             CCCCCCChhhhHhhh
Q psy1873           1 MGYRSVGKSSLSIQF   15 (157)
Q Consensus         1 vG~~~~GKssli~~~   15 (157)
                      +|+.|+|||+++.++
T Consensus        31 ~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          31 IGPNGSGKSNMMDAI   45 (427)
T ss_dssp             ECSTTSSHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            599999999999987

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=91.16  E-value=0.048  Score=34.84  Aligned_cols=16  Identities=31%  Similarity=0.493  Sum_probs=14.2

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |..||||||+++.|..
T Consensus         9 G~igSGKStv~~~l~~   24 (205)
T d1jjva_           9 GGIGSGKTTIANLFTD   24 (205)
T ss_dssp             CSTTSCHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8999999999988754

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=91.04  E-value=0.045  Score=35.06  Aligned_cols=17  Identities=35%  Similarity=0.401  Sum_probs=14.7

Q ss_pred             CCCCCChhhhHhhhhcc
Q psy1873           2 GYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         2 G~~~~GKssli~~~~~~   18 (157)
                      |..||||||+++.|.+.
T Consensus        10 G~igSGKStv~~~l~~~   26 (208)
T d1vhta_          10 GGIGSGKSTVANAFADL   26 (208)
T ss_dssp             CCTTSCHHHHHHHHHHT
T ss_pred             CCCcCCHHHHHHHHHHC
Confidence            99999999999988643

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=91.00  E-value=0.042  Score=38.12  Aligned_cols=16  Identities=25%  Similarity=0.378  Sum_probs=14.6

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |+-||||||+++.|.+
T Consensus        13 G~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_          13 GVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             CSTTSSHHHHHHHHHS
T ss_pred             CCccCCHHHHHHHHHH
Confidence            8999999999998875

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.83  E-value=0.036  Score=37.30  Aligned_cols=17  Identities=29%  Similarity=0.356  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|..|+|||||+..+.+
T Consensus        50 ~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          50 HGRAGSGKSVIASQALS   66 (277)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998765

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.81  E-value=0.82  Score=28.93  Aligned_cols=77  Identities=14%  Similarity=0.085  Sum_probs=48.0

Q ss_pred             EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEE-EEE
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIV-LVG  120 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~-vv~  120 (157)
                      .+.+.++|+++...  ......+..+|.++++... +..++..+.+.+..+.+..                 .|++ +|.
T Consensus       111 ~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~~~-----------------~~~~giv~  170 (237)
T d1g3qa_         111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNP-EISCLTDTMKVGIVLKKAG-----------------LAILGFVL  170 (237)
T ss_dssp             GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHHHHTT-----------------CEEEEEEE
T ss_pred             cCCEEEEccccccc--ccchhhhhhhhcccccccc-cceecchhhHHHHHHhhhh-----------------hhhhhhhh
Confidence            46788899987643  2334456678999888765 4667777766554443221                 6655 889


Q ss_pred             eCCCCCCCceecHHHHHHH
Q psy1873         121 NKKDLHMERMISYDEGKRL  139 (157)
Q Consensus       121 nK~Dl~~~~~~~~~~~~~~  139 (157)
                      |+.+... ..+.....+++
T Consensus       171 N~~~~~~-~~~~~~~~~~~  188 (237)
T d1g3qa_         171 NRYGRSD-RDIPPEAAEDV  188 (237)
T ss_dssp             EEETSCT-TCCCHHHHHHH
T ss_pred             ccccccc-chhhhHHHHhh
Confidence            9998543 34444444443

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.62  E-value=0.15  Score=34.16  Aligned_cols=16  Identities=31%  Similarity=0.534  Sum_probs=14.2

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |++++|||+|+..++.
T Consensus        67 G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          67 GPESSGKTTVALHAVA   82 (269)
T ss_dssp             CSSSSSHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHH
Confidence            8999999999987764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=90.46  E-value=0.051  Score=37.62  Aligned_cols=16  Identities=25%  Similarity=0.432  Sum_probs=14.4

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |+-||||||+++.|.+
T Consensus        11 G~iGsGKTTl~~~La~   26 (329)
T d1e2ka_          11 GPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             SCTTSSHHHHHHHHTC
T ss_pred             CCcCCCHHHHHHHHHH
Confidence            8999999999998864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=90.44  E-value=0.042  Score=38.56  Aligned_cols=17  Identities=18%  Similarity=0.374  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +||.|||||-|..+|..
T Consensus        74 iGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          74 IGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             eCCCCccHHHHHHHHHh
Confidence            69999999999998853

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=90.41  E-value=0.047  Score=36.67  Aligned_cols=14  Identities=14%  Similarity=0.190  Sum_probs=11.1

Q ss_pred             CCCCCCChhhhH-hh
Q psy1873           1 MGYRSVGKSSLS-IQ   14 (157)
Q Consensus         1 vG~~~~GKssli-~~   14 (157)
                      +|++|+|||+.+ .+
T Consensus        20 ~g~aGTGKTt~l~~r   34 (306)
T d1uaaa1          20 LAGAGSGKTRVITNK   34 (306)
T ss_dssp             CCCTTSCHHHHHHHH
T ss_pred             EeeCCccHHHHHHHH
Confidence            599999999754 44

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=90.35  E-value=0.035  Score=38.53  Aligned_cols=16  Identities=25%  Similarity=0.563  Sum_probs=14.5

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |+-||||||+++.+.+
T Consensus        12 G~iGsGKSTl~~~L~~   27 (331)
T d1osna_          12 GAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             ESSSSCTTHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8899999999999865

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=90.19  E-value=0.048  Score=34.02  Aligned_cols=18  Identities=22%  Similarity=0.512  Sum_probs=15.5

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      .|++|+|||++.-.++..
T Consensus        21 ~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          21 TGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EESTTSSHHHHHHHHHHT
T ss_pred             EeCCCCCHHHHHHHHHHc
Confidence            389999999999888764

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=89.69  E-value=0.063  Score=35.69  Aligned_cols=15  Identities=27%  Similarity=0.235  Sum_probs=13.5

Q ss_pred             CCCCCChhhhHhhhh
Q psy1873           2 GYRSVGKSSLSIQFV   16 (157)
Q Consensus         2 G~~~~GKssli~~~~   16 (157)
                      |+||+|||+|+..+.
T Consensus        42 G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          42 SGSGMGKSTFVRQQA   56 (277)
T ss_dssp             CSTTSSHHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHH
Confidence            899999999988775

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=89.16  E-value=0.058  Score=35.75  Aligned_cols=16  Identities=31%  Similarity=0.453  Sum_probs=13.9

Q ss_pred             CCCCCCChhhhHhhhh
Q psy1873           1 MGYRSVGKSSLSIQFV   16 (157)
Q Consensus         1 vG~~~~GKssli~~~~   16 (157)
                      .|++|+|||+|+..+.
T Consensus        35 ~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          35 VSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EESTTSSHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            3899999999998875

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=88.47  E-value=0.079  Score=37.59  Aligned_cols=17  Identities=24%  Similarity=0.171  Sum_probs=15.6

Q ss_pred             CCCCCChhhhHhhhhcc
Q psy1873           2 GYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         2 G~~~~GKssli~~~~~~   18 (157)
                      |+.|+||||.++.++..
T Consensus       165 GpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         165 GPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             CSTTSCHHHHHHHHHHH
T ss_pred             cCCCCCccHHHHHHhhh
Confidence            99999999999999864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=88.25  E-value=0.061  Score=34.54  Aligned_cols=17  Identities=29%  Similarity=0.561  Sum_probs=15.1

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .||+++|||.|+..++.
T Consensus        59 ~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          59 CGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             ESCGGGCHHHHHHHHHH
T ss_pred             ECCCCccHHHHHHHHHH
Confidence            49999999999998875

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=87.95  E-value=0.086  Score=36.16  Aligned_cols=17  Identities=29%  Similarity=0.514  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      +|++|||||.+...+.+
T Consensus        59 ~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          59 LGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             BSCSSSSHHHHHHHHHH
T ss_pred             ECCCcchHHHHHHHHHH
Confidence            59999999999998764

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=87.94  E-value=0.099  Score=34.91  Aligned_cols=17  Identities=35%  Similarity=0.634  Sum_probs=14.9

Q ss_pred             CCCCCChhhhHhhhhcc
Q psy1873           2 GYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         2 G~~~~GKssli~~~~~~   18 (157)
                      |++++|||+|+-.++..
T Consensus        61 G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          61 GPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             CSTTSSHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHH
Confidence            99999999999888653

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=87.84  E-value=0.099  Score=36.53  Aligned_cols=14  Identities=21%  Similarity=0.366  Sum_probs=12.0

Q ss_pred             CCCCCChhhhHhhh
Q psy1873           2 GYRSVGKSSLSIQF   15 (157)
Q Consensus         2 G~~~~GKssli~~~   15 (157)
                      |+||+|||+++..+
T Consensus       170 G~pGTGKTt~i~~~  183 (359)
T d1w36d1         170 GGPGTGKTTTVAKL  183 (359)
T ss_dssp             CCTTSTHHHHHHHH
T ss_pred             cCCCCCceehHHHH
Confidence            99999999988554

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=86.05  E-value=0.099  Score=35.33  Aligned_cols=12  Identities=25%  Similarity=0.290  Sum_probs=9.9

Q ss_pred             CCCCCCChhhhH
Q psy1873           1 MGYRSVGKSSLS   12 (157)
Q Consensus         1 vG~~~~GKssli   12 (157)
                      .|.+|+||||.+
T Consensus        30 ~g~aGSGKTt~l   41 (318)
T d1pjra1          30 MAGAGSGKTRVL   41 (318)
T ss_dssp             EECTTSCHHHHH
T ss_pred             EecCCccHHHHH
Confidence            489999999754

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=85.34  E-value=0.16  Score=32.86  Aligned_cols=16  Identities=19%  Similarity=0.320  Sum_probs=14.3

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |..||||||..+.|.+
T Consensus         8 G~igSGKsTva~~l~e   23 (241)
T d1deka_           8 GVKRSGKDTTADFIMS   23 (241)
T ss_dssp             CCTTSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8999999999998854

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=85.02  E-value=0.12  Score=36.59  Aligned_cols=18  Identities=28%  Similarity=0.239  Sum_probs=14.9

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|.+|+|||+++..++.+
T Consensus        56 ~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          56 NGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             EeCCCCcHHHHHHHHHHH
Confidence            599999999998877643

>d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.52  E-value=2.3  Score=25.96  Aligned_cols=35  Identities=17%  Similarity=0.100  Sum_probs=27.8

Q ss_pred             CcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecc
Q psy1873         114 VPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA  152 (157)
Q Consensus       114 ~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  152 (157)
                      .|++++|.......    ..++..+|++.++++++.+-.
T Consensus        32 rPvii~G~g~~~~~----a~~~l~~lae~~~~Pv~tt~~   66 (179)
T d1pvda1          32 NPVILADACCSRHD----VKAETKKLIDLTQFPAFVTPM   66 (179)
T ss_dssp             SEEEEECGGGTTTS----THHHHHHHHHHHCCCEEECGG
T ss_pred             CCEEEEecccchhh----hHHHHHHHHHhhCceEEeccc
Confidence            99999997776433    367899999999999886653

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=83.77  E-value=0.12  Score=34.95  Aligned_cols=18  Identities=17%  Similarity=0.211  Sum_probs=15.4

Q ss_pred             CCCCCCChhhhHhhhhcc
Q psy1873           1 MGYRSVGKSSLSIQFVDG   18 (157)
Q Consensus         1 vG~~~~GKssli~~~~~~   18 (157)
                      +|++|+|||+|+..+..+
T Consensus        49 ~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          49 VAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EECSSSSHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHH
Confidence            489999999999888753

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=83.74  E-value=0.2  Score=33.38  Aligned_cols=17  Identities=18%  Similarity=0.407  Sum_probs=15.0

Q ss_pred             CCCCCCChhhhHhhhhc
Q psy1873           1 MGYRSVGKSSLSIQFVD   17 (157)
Q Consensus         1 vG~~~~GKssli~~~~~   17 (157)
                      .|++++|||+|++.+..
T Consensus       110 ~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         110 FGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            49999999999998864

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.73  E-value=4.1  Score=26.60  Aligned_cols=90  Identities=13%  Similarity=0.118  Sum_probs=51.2

Q ss_pred             EEEEEEEeCCCCccCcCchhh-hccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcE-EEE
Q psy1873          42 DYDLKLVDTAGQDEYSIFPAQ-YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPI-VLV  119 (157)
Q Consensus        42 ~~~~~i~D~~g~~~~~~~~~~-~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~-~vv  119 (157)
                      .+.+.++|+++.-........ ....++.++++ ...+..++..+.+.+..+........             .++ -+|
T Consensus       118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~-~~~~~~s~~~~~~~~~~i~~~~~~~~-------------~~~~gvv  183 (289)
T d2afhe1         118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIV-CSGEMMAMYAANNISKGIVKYANSGS-------------VRLGGLI  183 (289)
T ss_dssp             TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEE-ECSSHHHHHHHHHHHHHHHHHHTTSC-------------CEEEEEE
T ss_pred             cCCeEeeccCCccCHHHHHHHHHhhccceeecc-cchhHHHHHHHHHHHHHHHhhhhccc-------------cccccee
Confidence            366788998765433332222 22456666655 44556677766666665544333221             444 378


Q ss_pred             EeCCCCCCCceecHHHHHHHHHHhCCcEEE
Q psy1873         120 GNKKDLHMERMISYDEGKRLAESWKAGFVE  149 (157)
Q Consensus       120 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e  149 (157)
                      .|+.+....    .+....+++.++.+++.
T Consensus       184 ~n~~~~~~~----~~~~~~~~~~~g~~vl~  209 (289)
T d2afhe1         184 CNSRNTDRE----DELIIALANKLGTQMIH  209 (289)
T ss_dssp             EECCCCTTH----HHHHHHHHHHHTSCEEE
T ss_pred             ehhhcchhh----HHHHHHHHHHcCCeEEE
Confidence            899875332    33456677788876654

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=81.41  E-value=0.24  Score=33.09  Aligned_cols=16  Identities=38%  Similarity=0.571  Sum_probs=14.3

Q ss_pred             CCCCCChhhhHhhhhc
Q psy1873           2 GYRSVGKSSLSIQFVD   17 (157)
Q Consensus         2 G~~~~GKssli~~~~~   17 (157)
                      |++++|||+|+..++.
T Consensus        64 G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          64 GPESGGKTTLALAIVA   79 (268)
T ss_dssp             ESTTSSHHHHHHHHHH
T ss_pred             cCCccchHHHHHHHHH
Confidence            8999999999988864